RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1729
(170 letters)
>gnl|CDD|238686 cd01390, HMGB-UBF_HMG-box, HMGB-UBF_HMG-box, class II and III
members of the HMG-box superfamily of DNA-binding
proteins. These proteins bind the minor groove of DNA
in a non-sequence specific fashion and contain two or
more tandem HMG boxes. Class II members include
non-histone chromosomal proteins, HMG1 and HMG2, which
bind to bent or distorted DNA such as four-way DNA
junctions, synthetic DNA cruciforms, kinked
cisplatin-modified DNA, DNA bulges, cross-overs in
supercoiled DNA, and can cause looping of linear DNA.
Class III members include nucleolar and mitochondrial
transcription factors, UBF and mtTF1, which bind
four-way DNA junctions.
Length = 66
Score = 43.4 bits (103), Expect = 1e-06
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
VTK+LG +W +LS EKK Y ++AE DK+RY +E+K
Sbjct: 31 VTKILGEKWKELSEEEKKKYEEKAEKDKERYEKEMK 66
Score = 43.4 bits (103), Expect = 1e-06
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 87
VTK+LG +W +LS EKK Y ++AE DK+RY +E+K
Sbjct: 31 VTKILGEKWKELSEEEKKKYEEKAEKDKERYEKEMK 66
>gnl|CDD|238037 cd00084, HMG-box, High Mobility Group (HMG)-box is found in a
variety of eukaryotic chromosomal proteins and
transcription factors. HMGs bind to the minor groove of
DNA and have been classified by DNA binding
preferences. Two phylogenically distinct groups of
Class I proteins bind DNA in a sequence specific
fashion and contain a single HMG box. One group
(SOX-TCF) includes transcription factors, TCF-1, -3,
-4; and also SRY and LEF-1, which bind four-way DNA
junctions and duplex DNA targets. The second group
(MATA) includes fungal mating type gene products MC,
MATA1 and Ste11. Class II and III proteins (HMGB-UBF)
bind DNA in a non-sequence specific fashion and contain
two or more tandem HMG boxes. Class II members include
non-histone chromosomal proteins, HMG1 and HMG2, which
bind to bent or distorted DNA such as four-way DNA
junctions, synthetic DNA cruciforms, kinked
cisplatin-modified DNA, DNA bulges, cross-overs in
supercoiled DNA, and can cause looping of linear DNA.
Class III members include nucleolar and mitochondrial
transcription factors, UBF and mtTF1, which bind
four-way DNA junctions.
Length = 66
Score = 40.7 bits (96), Expect = 1e-05
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
++K+LG W LS EKK Y ++AE DK+RY +E+
Sbjct: 31 ISKILGEMWKSLSEEEKKKYEEKAEKDKERYEKEMP 66
Score = 40.7 bits (96), Expect = 1e-05
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 87
++K+LG W LS EKK Y ++AE DK+RY +E+
Sbjct: 31 ISKILGEMWKSLSEEEKKKYEEKAEKDKERYEKEMP 66
>gnl|CDD|197700 smart00398, HMG, high mobility group.
Length = 70
Score = 37.3 bits (87), Expect = 3e-04
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYR 90
++K LG W LS EK Y ++A+ DK+RY EE+ Y+
Sbjct: 32 ISKKLGERWKLLSEEEKAPYEEKAKKDKERYEEEMPEYK 70
Score = 35.8 bits (83), Expect = 0.001
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
++K LG W LS EK Y ++A+ DK+RY EE+
Sbjct: 32 ISKKLGERWKLLSEEEKAPYEEKAKKDKERYEEEMP 67
>gnl|CDD|189580 pfam00505, HMG_box, HMG (high mobility group) box.
Length = 69
Score = 35.3 bits (82), Expect = 0.001
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYR 90
++K+LG +W LS EKK Y ++AE +K RY + Y+
Sbjct: 31 ISKILGEKWKNLSEEEKKPYEEKAEKEKARYEKAYPAYK 69
Score = 33.4 bits (77), Expect = 0.008
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
++K+LG +W LS EKK Y ++AE +K RY +
Sbjct: 31 ISKILGEKWKNLSEEEKKPYEEKAEKEKARYEKAYP 66
>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type. This is a zinc-finger
domain with the CxxCx(12)Hx(6)H motif, found in multiple
copies in a wide range of proteins from plants to
metazoans. Some member proteins, particularly those from
plants, are annotated as being RNA-binding.
Length = 25
Score = 33.2 bits (77), Expect = 0.003
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 135 LYCRVCDQWFTTLHNKREHLNGRQH 159
YC +C+ FT+ + HL G++H
Sbjct: 1 FYCELCNVTFTSESQLKSHLRGKKH 25
>gnl|CDD|185511 PTZ00199, PTZ00199, high mobility group protein; Provisional.
Length = 94
Score = 34.4 bits (79), Expect = 0.006
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRK 91
V K++G W+KLS EK Y +A+ DK RY +E Y K
Sbjct: 54 AVGKMVGEAWNKLSEEEKAPYEKKAQEDKVRYEKEKAEYAK 94
Score = 30.6 bits (69), Expect = 0.14
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREE 49
V K++G W+KLS EK Y +A+ DK RY +E
Sbjct: 55 VGKMVGEAWNKLSEEEKAPYEKKAQEDKVRYEKE 88
>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding.
This domain family is found in archaea and eukaryotes,
and is approximately 30 amino acids in length. The
mammalian members of this group occur multiple times
along the protein, joined by flexible linkers, and are
referred to as JAZ - dsRNA-binding ZF protein -
zinc-fingers. The JAZ proteins are expressed in all
tissues tested and localise in the nucleus, particularly
the nucleolus. JAZ preferentially binds to
double-stranded (ds) RNA or RNA/DNA hybrids rather than
DNA. In addition to binding double-stranded RNA, these
zinc-fingers are required for nucleolar localisation.
Length = 27
Score = 29.9 bits (68), Expect = 0.052
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 134 ELYCRVCDQWFTTLHNKREHLNGRQH 159
+ YC CD++F + + HL ++H
Sbjct: 1 QFYCVACDKYFKSENALENHLKSKKH 26
>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger. Family of C2H2-type zinc
fingers, present in matrin, U1 small nuclear
ribonucleoprotein C and other RNA-binding proteins.
Length = 35
Score = 29.9 bits (68), Expect = 0.066
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 135 LYCRVCDQWFTTLHNKREHLNGRQHFQRFDRR 166
YC++C+ FT + HL G++H + +R
Sbjct: 4 FYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
>gnl|CDD|204115 pfam09011, DUF1898, Domain of unknown function (DUF1898). This
domain is predominantly found in Maelstrom homolog
proteins. It has no known function.
Length = 69
Score = 30.5 bits (69), Expect = 0.090
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREE 49
+KL +W +S EK+ Y ++A DKKRY E
Sbjct: 35 FSKLCSEKWKAMSEEEKEKYEEKAREDKKRYDRE 68
Score = 30.5 bits (69), Expect = 0.090
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREE 85
+KL +W +S EK+ Y ++A DKKRY E
Sbjct: 35 FSKLCSEKWKAMSEEEKEKYEEKAREDKKRYDRE 68
>gnl|CDD|227935 COG5648, NHP6B, Chromatin-associated proteins containing the HMG
domain [Chromatin structure and dynamics].
Length = 211
Score = 31.0 bits (70), Expect = 0.24
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAY 95
V KLL +W +L+ EK+ Y A D++RY+ E + Y K
Sbjct: 101 VGKLLSEKWKELTDEEKEPYYKEANSDRERYQREKEEYNKKLPN 144
>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component
Toc86/159, G and M domains. The long precursor of the
86K protein originally described is proposed to have
three domains. The N-terminal A-domain is acidic,
repetitive, weakly conserved, readily removed by
proteolysis during chloroplast isolation, and not
required for protein translocation. The other domains
are designated G (GTPase) and M (membrane anchor); this
family includes most of the G domain and all of M
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 763
Score = 30.7 bits (69), Expect = 0.41
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 20/73 (27%)
Query: 61 SKLSLPEKKVYLDRAE-----VDKKRYREELKVYRKSDAYQSYLRRKRVKSLQANGTEES 115
+KLS ++K YL+ + + KK++REE KR+K ++ G E
Sbjct: 422 AKLSKEQRKAYLEEYDYRVKLLQKKQWREE---------------LKRMKMMKKFGKEIG 466
Query: 116 DIATDATDEIDEE 128
++ ++E+DEE
Sbjct: 467 ELPDGYSEEVDEE 479
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and
metabolism].
Length = 541
Score = 30.3 bits (69), Expect = 0.55
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 94 AYQSYLRRKRVKSLQANGTEESDIATD--ATDEIDEEEEDNEELYCRVCDQW 143
Y+ Y + + L EE D+ T DE++E+E++ + + +V D W
Sbjct: 495 GYKLYKKTTKFVRL-----EEIDLDTGRREYDELEEQEDEEKSFFKKVLDFW 541
>gnl|CDD|222228 pfam13567, DUF4131, Domain of unknown function (DUF4131). This
domain is frequently found to the N-terminus of the
Competence domain, pfam03772.
Length = 173
Score = 29.3 bits (66), Expect = 0.61
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 18/93 (19%)
Query: 29 LPEKKVYL-----DRAEVDKKRYREELKVTKLLGNEWSKLSLPEK-KVYLDRAEVDKKRY 82
L K+V + EV R R L+V +LL +K + K VY+ + + K R
Sbjct: 70 LDGKEVTVEGVVASTPEVTGDRVRFVLEVERLLVGGDTKP-VSGKVLVYVRKDSLPKLRP 128
Query: 83 REEL----KVYRKSDA-------YQSYLRRKRV 104
+ + K+ Y+ YL R+ +
Sbjct: 129 GDRIRVTGKLKPPRPPRNPGGFDYRRYLARQGI 161
>gnl|CDD|227507 COG5180, PBP1, Protein interacting with poly(A)-binding protein
[RNA processing and modification].
Length = 654
Score = 28.9 bits (64), Expect = 1.6
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 59 EWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLR--RKRVKSLQANGTEESD 116
+W + + EK + + D++ Y E + + S +Y+S ++ R+ K ++ + T
Sbjct: 150 DWDQFAANEKLFGVK-SRFDEELYTE--VIDKSSPSYKSKVQEARRIAKEIELSATTNIH 206
Query: 117 IATDATDEIDEEEEDNEELYCRV 139
IA + D+ D E+LY V
Sbjct: 207 IAEERGLGNDDSGLDEEDLYSGV 229
>gnl|CDD|221775 pfam12794, MscS_TM, Mechanosensitive ion channel inner membrane
domain 1. The small mechanosensitive channel, MscS, is
a part of the turgor-driven solute efflux system that
protects bacteria from lysis in the event of osmotic
shock. The MscS protein alone is sufficient to form a
functional mechanosensitive channel gated directly by
tension in the lipid bilayer. The MscS proteins are
heptamers of three transmembrane subunits with seven
converging M3 domains, and this domain is one of the
inner membrane domains.
Length = 339
Score = 27.6 bits (62), Expect = 3.2
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 94 AYQSYLRRKRVKSLQANGTEESDIATDATDEIDEEEEDNEEL 135
AY+ + KR + L EE + + A + I+E E D E +
Sbjct: 259 AYER-AKAKRAEILAQRAEEEEESSEGAAETIEEPELDLETI 299
>gnl|CDD|218379 pfam05009, EBV-NA3, Epstein-Barr virus nuclear antigen 3 (EBNA-3).
This family contains EBNA-3A, -3B, and -3C which are
latent infection nuclear proteins important for
Epstein-Barr virus (EBV)-induced B-cell immortalisation
and the immune response to EBV infection.
Length = 254
Score = 27.4 bits (61), Expect = 3.3
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 91 KSDAYQSYLRRKRVKSLQANGTE-ESDIATDATDEIDEEEEDNE 133
S + R + L A T E D DAT E E ED+E
Sbjct: 185 TSQDITAAFLRGQALGLSALRTPGEPDD--DATVETSSESEDSE 226
>gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc [Energy metabolism, Pyruvate
dehydrogenase].
Length = 315
Score = 27.5 bits (62), Expect = 3.5
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 15/70 (21%)
Query: 78 DKKRYREELKVYRKSD---AYQSYLRRKRVKSLQANGTEESDIATDATDEIDE------- 127
K R +EE++ +RK D ++ L + + S + E +I + E++E
Sbjct: 245 AKYRSKEEVEEWRKRDPIEKLKARLIEQGIASEE----ELKEIDKEVRAEVEEAVEFAEN 300
Query: 128 -EEEDNEELY 136
E EELY
Sbjct: 301 SPEPPVEELY 310
>gnl|CDD|187693 cd07180, RNase_HII_Archaea_like, Archaeal ribonuclease HII.
Ribonuclease (RNase) H is classified into two families,
type I (prokaryotic RNase HI, eukaryotic RNase H1 and
viral RNase H) and type II (prokaryotic RNase HII and
HIII, archaeal RNase HII and eukaryotic RNase H2/HII).
RNase H endonucleolytically hydrolyzes an RNA strand
when it is annealed to a complementary DNA strand in the
presence of divalent cations, in DNA replication or
repair. Some archaeal RNase HII show broad divalent
cation specificity. It is proposed that three of the
four acidic residues at the active site are involved in
metal binding and the fourth one involved in the
catalytic process in archaea. Most archaeal genomes
contain multiple RNase H genes. Despite a lack of
evidence for homology from sequence comparisons, type I
and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. It appears that type I and type II RNases H
also have overlapping functions in cells, as
over-expression of Escherichia coli RNase HII can
complement an RNase HI deletion phenotype in E. coli.
Length = 204
Score = 26.8 bits (60), Expect = 4.5
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 26/108 (24%)
Query: 8 MISTTKLLVTKLLGNEWSKLSLPEKKVYLDR----------------AEVDKKRYREEL- 50
I L + LG + SK P+K+ L E+D++R R L
Sbjct: 21 AIDEEDLKKLEELGVKDSKKLTPKKREELFNEILKVADDVVIVVVSPEEIDERRERGNLN 80
Query: 51 -----KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSD 93
+L+ ++L L + VY+D +V+++R+ E L+ +
Sbjct: 81 ELEVEAFAELI----NRLKLKPEIVYVDACDVNEERFAERLRERLNTG 124
>gnl|CDD|238684 cd01388, SOX-TCF_HMG-box, SOX-TCF_HMG-box, class I member of the
HMG-box superfamily of DNA-binding proteins. These
proteins contain a single HMG box, and bind the minor
groove of DNA in a highly sequence-specific manner.
Members include SRY and its homologs in insects and
vertebrates, and transcription factor-like proteins,
TCF-1, -3, -4, and LEF-1. They appear to bind the minor
groove of the A/T C A A A G/C-motif.
Length = 72
Score = 25.7 bits (57), Expect = 4.8
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREE 49
++K+LG+ W LS EK+ Y + A+ K+ + +
Sbjct: 32 ISKILGDRWKALSNEEKQPYYEEAKKLKELHMKL 65
Score = 25.7 bits (57), Expect = 4.8
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREE 85
++K+LG+ W LS EK+ Y + A+ K+ + +
Sbjct: 32 ISKILGDRWKALSNEEKQPYYEEAKKLKELHMKL 65
>gnl|CDD|109884 pfam00846, Hanta_nucleocap, Hantavirus nucleocapsid protein.
Length = 428
Score = 27.2 bits (60), Expect = 4.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 85 ELKVYRKSDAYQSYLRRKRVKSLQ 108
E K+ +KS YQSYLRR + +Q
Sbjct: 351 EEKLKKKSAFYQSYLRRTQSMGIQ 374
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 24.3 bits (53), Expect = 5.3
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 137 CRVCDQWFTTLHNKREHLNGRQH 159
C C + F + REH+ R H
Sbjct: 3 CPECGKVFKSKSALREHM--RTH 23
>gnl|CDD|132784 cd06874, PX_KIF16B_SNX23, The phosphoinositide binding Phox
Homology domain of KIF16B kinesin or Sorting Nexin 23.
The PX domain is a phosphoinositide (PI) binding module
present in many proteins with diverse functions such as
cell signaling, vesicular trafficking, protein sorting,
and lipid modification, among others. KIF16B, also
called sorting nexin 23 (SNX23), is a family-3 kinesin
which harbors an N-terminal kinesin motor domain
containing ATP and microtubule binding sites, a
ForkHead Associated (FHA) domain, and a C-terminal PX
domain. The PX domain of KIF16B binds to
phosphatidylinositol-3-phosphate (PI3P) in early
endosomes and plays a role in the transport of early
endosomes to the plus end of microtubules. By
regulating early endosome plus end motility, KIF16B
modulates the balance between recycling and degradation
of receptors. SNXs make up the largest group among PX
domain containing proteins. They are involved in
regulating membrane traffic and protein sorting in the
endosomal system. The PX domain of SNXs binds PIs and
targets the protein to PI-enriched membranes. SNXs
differ from each other in PI-binding specificity and
affinity, and the presence of other protein-protein
interaction domains, which help determine subcellular
localization and specific function in the endocytic
pathway.
Length = 127
Score = 25.8 bits (57), Expect = 7.6
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 45 RYREELKVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKS 92
R+RE K KL E + L P KK++ +++E K R +L+ Y ++
Sbjct: 40 RFRELHKTMKLKYPEVAALEFPPKKLFGNKSERVAKERRRQLETYLRN 87
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 26.6 bits (59), Expect = 8.1
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 8/48 (16%)
Query: 102 KRVKSLQANGTEESDIATDATDEIDEEEED-------NEELYCRVCDQ 142
KRV S E +I T+ T + +E N L C VCD+
Sbjct: 55 KRVYSCNTKAKEGMNILTN-TPNLMDERNAIMQTYDVNHPLECGVCDK 101
>gnl|CDD|201356 pfam00628, PHD, PHD-finger. PHD folds into an interleaved type of
Zn-finger chelating 2 Zn ions in a similar manner to
that of the RING and FYVE domains. Several PHD fingers
have been identified as binding modules of methylated
histone H3.
Length = 51
Score = 24.4 bits (53), Expect = 8.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 127 EEEEDNEELYCRVCDQWF 144
+ ++D E L C CD+WF
Sbjct: 7 KVDDDGELLLCDGCDRWF 24
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 23.8 bits (51), Expect = 8.8
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 136 YCRVCDQWFTTLHNKREHLN 155
C +C + F++ + HL
Sbjct: 2 KCPLCGKSFSSKDALKRHLR 21
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.131 0.376
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,663,598
Number of extensions: 799252
Number of successful extensions: 974
Number of sequences better than 10.0: 1
Number of HSP's gapped: 956
Number of HSP's successfully gapped: 94
Length of query: 170
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 80
Effective length of database: 6,945,742
Effective search space: 555659360
Effective search space used: 555659360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (24.9 bits)