RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1729
(170 letters)
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 45.3 bits (107), Expect = 1e-07
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVKSLQ 108
+G+ W ++S +K+ Y AE +++Y+ L ++ KS + Q K S +
Sbjct: 37 RMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNK 93
Score = 37.9 bits (88), Expect = 7e-05
Identities = 10/54 (18%), Positives = 24/54 (44%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVTKLLGNEWSKLSLPEKK 69
+G+ W ++S +K+ Y AE +++Y+ L + + + + E
Sbjct: 37 RMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYI 90
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 42.2 bits (99), Expect = 1e-06
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 94
+V K LG +W L+ EK+ Y +A+ DKKRY E ++Y + A
Sbjct: 50 QVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYNATLA 93
Score = 35.6 bits (82), Expect = 4e-04
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
V K LG +W L+ EK+ Y +A+ DKKRY E +
Sbjct: 51 VGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKE 86
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 41.5 bits (97), Expect = 4e-06
Identities = 14/52 (26%), Positives = 20/52 (38%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKR 103
L +W LS EK Y + + KK Y EL + +S + R
Sbjct: 44 RMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLG 95
Score = 36.1 bits (83), Expect = 4e-04
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
L +W LS EK Y + + KK Y EL
Sbjct: 44 RMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELL 79
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 40.2 bits (94), Expect = 7e-06
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVK 105
+ ++LG W LS E+ Y + A +++ + + + D Y +RKR K
Sbjct: 33 INQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 86
Score = 31.0 bits (70), Expect = 0.018
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREE 49
+ ++LG W LS E+ Y + A +++ + +
Sbjct: 33 INQILGRRWHALSREEQAKYYELARKERQLHMQL 66
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1
{Hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 38.7 bits (90), Expect = 2e-05
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRK 91
V K LG W+ + +K+ Y +A K++Y +++ YR
Sbjct: 33 VAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 72
Score = 34.8 bits (80), Expect = 6e-04
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
V K LG W+ + +K+ Y +A K++Y +++
Sbjct: 33 VAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIA 68
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 38.5 bits (90), Expect = 2e-05
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 120 DATDEIDEEEEDNEELYCRVCDQWFTTLHNKREHLNGRQHFQR 162
D E D + C C ++F N + H + H +R
Sbjct: 1 DPNAEFDPDLPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKR 43
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 36.7 bits (85), Expect = 2e-04
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 102
++K LG +W L+ EK + A+ + +RE+ Y+ ++ + K
Sbjct: 35 ISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAKMLPK 85
Score = 32.5 bits (74), Expect = 0.005
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVTK 54
++K LG +W L+ EK + A+ + +RE+ K
Sbjct: 35 ISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYK 73
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId:
7227]}
Length = 73
Score = 36.3 bits (84), Expect = 2e-04
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKS 92
V K G W ++ +K + +A K Y +K + +
Sbjct: 34 VAKRGGELWR--AMKDKSEWEAKAAKAKDDYDRAVKEFEAN 72
Score = 30.9 bits (70), Expect = 0.013
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
V K G W ++ +K + +A K Y +K
Sbjct: 34 VAKRGGELWR--AMKDKSEWEAKAAKAKDDYDRAVK 67
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 35.6 bits (82), Expect = 3e-04
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 51 KVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 89
+ +K W +S EK + D A+ DK RY E+K Y
Sbjct: 33 EFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71
Score = 33.3 bits (76), Expect = 0.002
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
+K W +S EK + D A+ DK RY E+K
Sbjct: 34 FSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK 69
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 35.3 bits (81), Expect = 5e-04
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRK 102
+TK+L ++ +L +K Y+ + +K+ + L +R+ +K
Sbjct: 41 LTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPDLIQNAKK 91
Score = 31.1 bits (70), Expect = 0.015
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELK 51
+TK+L ++ +L +K Y+ + +K+ + L
Sbjct: 41 LTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLA 76
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 34.9 bits (80), Expect = 6e-04
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVY 89
+T+LL W+ LS +K Y R K + +
Sbjct: 51 LTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSGPS 88
Score = 34.6 bits (79), Expect = 0.001
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREE 49
+T+LL W+ LS +K Y R K + +
Sbjct: 51 LTRLLARMWNDLSEKKKAKYKAREAALKAQSERK 84
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 34.8 bits (80), Expect = 7e-04
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDAYQSYLRRKRVKS 106
++K LG EW LS EK+ ++D A+ + + +E Y+ Y R++ K+
Sbjct: 33 ISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYK-------YRPRRKTKT 80
Score = 30.2 bits (68), Expect = 0.033
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREEL 50
++K LG EW LS EK+ ++D A+ + + +E
Sbjct: 33 ISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEH 67
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 34.4 bits (79), Expect = 7e-04
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 16 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREE 49
++K+LG+ W ++ EK+ Y + K++ E+
Sbjct: 33 ISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEK 66
Score = 34.4 bits (79), Expect = 7e-04
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 52 VTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREE 85
++K+LG+ W ++ EK+ Y + K++ E+
Sbjct: 33 ISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEK 66
>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ)
{African clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 55
Score = 30.7 bits (69), Expect = 0.011
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 126 DEEEEDNEELYCRVCDQWFTTLHNKREHLNGRQHFQRFDRR 166
+ + ++ C VC+ F++ H G+ H + R
Sbjct: 13 EISDGEDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLR 53
>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo
sapiens) [TaxId: 9606]}
Length = 61
Score = 28.2 bits (63), Expect = 0.10
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 136 YCRVCDQWFT--TLHNKREHLNGRQH 159
YC CD + T + ++ H +GR+H
Sbjct: 5 YCDYCDTYLTHDSPSVRKTHCSGRKH 30
>d1izma_ a.199.1.1 (A:) Hypothetical protein HI0817 {Haemophilus
influenzae [TaxId: 727]}
Length = 170
Score = 26.0 bits (57), Expect = 1.9
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 113 EESDIATDATDEIDEEEEDNEEL--YCRVCDQW-FTTLH 148
+ + D D +E E EE+ Y R ++ +
Sbjct: 132 DICQLGYDEDDNEEELAEALEEIIEYVRTIAMLFYSHFN 170
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 26.1 bits (57), Expect = 2.3
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 68 KKVYLDRAEVDKKRYREELKVYRKSDA-YQS-YLRRKRVKSLQANGTEESDIATDATDEI 125
K + + EV+K+ E ++ K Y+ + +R R+ S Q E E
Sbjct: 31 KTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVES 90
Query: 126 DEEEEDNEE 134
E E +
Sbjct: 91 LNETELLVD 99
>d1l8ya_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 24.7 bits (53), Expect = 2.9
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 35 YLDRAEVDKKRYREELKVTKLLGNEWSKLSLPEKKVYLDRAEVDKKRYREELKVYRKSDA 94
YL R + D+ + + +++T W+ + EK +++ +A D+KRY EL R A
Sbjct: 22 YLARFKNDRVKALKAMEMT------WNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPA 75
Query: 95 YQSYLRRKRVK 105
+ K+++
Sbjct: 76 ATN--SSKKLE 84
>d2oz4a2 b.1.1.4 (A:186-282) Intercellular adhesion molecule-1,
ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 97
Score = 24.4 bits (53), Expect = 3.8
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 105 KSLQANGTEESD-IATDATDEIDEEEEDNEELYCRV 139
+ L T +D + A+ + E+E + L C V
Sbjct: 45 QRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAV 80
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 121
Score = 24.0 bits (52), Expect = 6.6
Identities = 7/37 (18%), Positives = 10/37 (27%)
Query: 124 EIDEEEEDNEELYCRVCDQWFTTLHNKREHLNGRQHF 160
E + C CD+ F + H F
Sbjct: 5 SSGEPAHGRQHTPCLFCDRLFASAEETFSHCKLEHQF 41
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.376
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 652,136
Number of extensions: 30183
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 43
Length of query: 170
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,322,926
Effective search space: 120386266
Effective search space used: 120386266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.3 bits)