Query psy17297
Match_columns 456
No_of_seqs 177 out of 1347
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 18:21:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17297.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17297hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 4E-132 9E-137 956.2 31.8 434 1-434 1-438 (443)
2 PLN00221 tubulin alpha chain; 100.0 2E-112 5E-117 881.3 32.8 435 1-435 1-446 (450)
3 PTZ00335 tubulin alpha chain; 100.0 4E-111 9E-116 871.5 32.9 431 1-431 1-442 (448)
4 PTZ00010 tubulin beta chain; P 100.0 3E-110 6E-115 866.6 33.2 432 1-432 1-433 (445)
5 PLN00220 tubulin beta chain; P 100.0 7E-109 2E-113 857.7 33.1 428 1-428 1-429 (447)
6 PLN00222 tubulin gamma chain; 100.0 2E-107 4E-112 844.4 32.6 430 1-431 2-448 (454)
7 cd02188 gamma_tubulin Gamma-tu 100.0 2E-107 5E-112 839.9 30.5 419 2-421 1-431 (431)
8 cd02187 beta_tubulin The tubul 100.0 8E-107 2E-111 837.7 32.8 423 2-424 1-424 (425)
9 cd02186 alpha_tubulin The tubu 100.0 6E-107 1E-111 839.6 30.7 423 2-424 1-434 (434)
10 PTZ00387 epsilon tubulin; Prov 100.0 5E-106 1E-110 834.2 32.6 416 1-427 1-452 (465)
11 KOG1374|consensus 100.0 1E-100 3E-105 739.0 27.3 428 1-429 2-444 (448)
12 cd02189 delta_tubulin The tubu 100.0 1.1E-98 2E-103 780.6 33.1 409 4-422 2-445 (446)
13 cd02190 epsilon_tubulin The tu 100.0 7.4E-99 2E-103 767.0 28.6 379 2-424 1-379 (379)
14 cd06059 Tubulin The tubulin su 100.0 5.7E-91 1.2E-95 713.1 29.8 381 3-423 1-382 (382)
15 KOG1376|consensus 100.0 6.1E-88 1.3E-92 649.2 14.8 403 1-418 1-406 (407)
16 KOG1375|consensus 100.0 3.6E-68 7.8E-73 514.9 14.1 347 41-427 5-352 (369)
17 cd00286 Tubulin_FtsZ Tubulin/F 100.0 3.4E-65 7.3E-70 513.6 25.2 327 3-370 1-328 (328)
18 cd06060 misato Human Misato sh 100.0 8.5E-52 1.8E-56 429.5 28.9 406 2-423 1-493 (493)
19 PF00091 Tubulin: Tubulin/FtsZ 100.0 1E-50 2.2E-55 385.0 11.3 214 3-222 1-215 (216)
20 smart00864 Tubulin Tubulin/Fts 100.0 4.9E-37 1.1E-41 286.1 9.0 184 50-243 4-192 (192)
21 KOG2530|consensus 100.0 3.8E-34 8.2E-39 283.3 12.8 238 1-254 1-324 (483)
22 cd02202 FtsZ_type2 FtsZ is a G 100.0 1.8E-31 4E-36 269.2 14.6 226 1-269 1-233 (349)
23 cd02191 FtsZ FtsZ is a GTPase 99.9 1.2E-26 2.6E-31 230.0 14.8 207 1-257 1-207 (303)
24 TIGR00065 ftsZ cell division p 99.9 2.2E-25 4.8E-30 224.3 13.0 205 4-257 20-224 (349)
25 cd02201 FtsZ_type1 FtsZ is a G 99.9 1E-24 2.2E-29 217.0 12.7 207 4-258 3-209 (304)
26 PF03953 Tubulin_C: Tubulin C- 99.9 5.5E-24 1.2E-28 184.9 10.5 123 260-382 1-126 (126)
27 PRK13018 cell division protein 99.9 3.6E-23 7.8E-28 209.1 14.3 205 4-257 31-235 (378)
28 PF14881 Tubulin_3: Tubulin do 99.9 6E-23 1.3E-27 188.2 11.8 149 81-241 17-180 (180)
29 PRK09330 cell division protein 99.8 6.1E-21 1.3E-25 193.1 12.2 206 4-257 16-221 (384)
30 PF10644 Misat_Tub_SegII: Misa 99.5 3.8E-15 8.3E-20 127.0 4.1 67 2-74 1-72 (115)
31 COG0206 FtsZ Cell division GTP 99.3 1.3E-11 2.9E-16 122.8 12.3 147 103-258 73-219 (338)
32 smart00865 Tubulin_C Tubulin/F 98.4 1.6E-07 3.4E-12 80.0 3.2 114 245-381 1-119 (120)
33 PF13809 Tubulin_2: Tubulin li 97.2 0.0086 1.9E-07 61.0 14.5 61 132-192 150-218 (345)
34 PF06908 DUF1273: Protein of u 68.4 21 0.00046 32.7 7.3 84 111-204 27-111 (177)
35 PF03610 EIIA-man: PTS system 66.4 8.8 0.00019 32.3 4.1 34 110-143 38-71 (116)
36 PRK14484 phosphotransferase ma 65.7 6 0.00013 34.1 2.9 42 112-157 41-83 (124)
37 PF12953 DUF3842: Domain of un 58.2 11 0.00024 32.6 3.2 29 140-168 6-35 (131)
38 TIGR00824 EIIA-man PTS system, 57.6 42 0.00091 28.3 6.7 32 112-143 41-72 (116)
39 cd00006 PTS_IIA_man PTS_IIA, P 51.9 42 0.00091 28.4 5.9 32 111-142 39-70 (122)
40 cd00741 Lipase Lipase. Lipase 47.1 37 0.00081 29.6 5.0 61 102-166 1-61 (153)
41 PLN02847 triacylglycerol lipas 43.5 30 0.00065 37.7 4.3 62 102-167 224-287 (633)
42 TIGR02364 dha_pts dihydroxyace 40.5 27 0.00058 30.1 2.9 41 112-155 41-83 (125)
43 PF00710 Asparaginase: Asparag 36.8 1.5E+02 0.0032 29.7 8.0 92 107-204 54-145 (313)
44 COG1528 Ftn Ferritin-like prot 35.0 26 0.00057 31.7 2.0 48 373-426 97-146 (167)
45 PRK09461 ansA cytoplasmic aspa 34.9 1.4E+02 0.0031 30.2 7.6 94 107-207 63-156 (335)
46 cd00519 Lipase_3 Lipase (class 34.8 47 0.001 31.2 3.9 59 97-159 96-154 (229)
47 COG0159 TrpA Tryptophan syntha 32.9 1.4E+02 0.003 29.3 6.7 76 117-212 161-242 (265)
48 PRK13660 hypothetical protein; 32.5 2.8E+02 0.006 25.6 8.3 108 111-237 27-135 (182)
49 PF02353 CMAS: Mycolic acid cy 30.2 68 0.0015 31.5 4.2 65 97-168 28-93 (273)
50 cd00411 Asparaginase Asparagin 30.2 2E+02 0.0043 29.0 7.6 92 107-205 60-153 (323)
51 KOG3178|consensus 29.4 1E+02 0.0022 31.4 5.2 41 121-166 167-207 (342)
52 PF09370 TIM-br_sig_trns: TIM- 28.9 32 0.00068 33.6 1.6 32 114-153 2-33 (268)
53 PRK15088 PTS system mannose-sp 28.5 1.6E+02 0.0035 29.7 6.6 33 111-143 41-73 (322)
54 PF01764 Lipase_3: Lipase (cla 28.3 31 0.00067 29.3 1.3 56 101-160 35-91 (140)
55 PF12210 Hrs_helical: Hepatocy 24.7 92 0.002 25.5 3.3 53 367-424 28-89 (96)
56 PF04695 Pex14_N: Peroxisomal 24.7 30 0.00064 30.3 0.5 28 388-418 24-51 (136)
57 PF01713 Smr: Smr domain; Int 24.1 2.5E+02 0.0055 21.7 5.8 53 113-168 9-67 (83)
58 COG3105 Uncharacterized protei 24.0 82 0.0018 27.3 3.0 25 404-428 58-82 (138)
59 COG0572 Udk Uridine kinase [Nu 23.1 84 0.0018 29.9 3.2 27 134-161 9-35 (218)
60 PF11340 DUF3142: Protein of u 22.5 5.8E+02 0.013 23.5 8.4 81 108-201 22-105 (181)
61 PRK15414 phosphomannomutase Cp 22.2 6E+02 0.013 26.7 9.9 94 111-205 151-248 (456)
62 COG2893 ManX Phosphotransferas 21.9 2.6E+02 0.0057 24.6 6.0 62 98-164 29-90 (143)
63 TIGR02153 gatD_arch glutamyl-t 21.6 3.6E+02 0.0079 28.1 7.9 91 108-204 121-211 (404)
64 PF13508 Acetyltransf_7: Acety 21.6 98 0.0021 23.3 2.9 22 144-165 41-62 (79)
65 TIGR00262 trpA tryptophan synt 21.5 2.6E+02 0.0056 27.1 6.4 74 117-209 154-233 (256)
66 PTZ00489 glutamate 5-kinase; P 21.2 4.1E+02 0.0089 25.9 7.8 47 154-202 87-133 (264)
67 smart00870 Asparaginase Aspara 21.0 3.6E+02 0.0078 27.1 7.6 95 108-207 58-154 (323)
68 TIGR01732 tiny_TM_bacill conse 20.8 64 0.0014 19.8 1.2 13 139-151 1-13 (26)
69 CHL00200 trpA tryptophan synth 20.7 3E+02 0.0066 26.8 6.7 73 116-208 157-236 (263)
70 TIGR00519 asnASE_I L-asparagin 20.7 2.9E+02 0.0064 27.9 6.9 95 107-208 59-158 (336)
71 cd00598 GH18_chitinase-like Th 20.2 3.9E+02 0.0084 24.2 7.2 88 109-204 86-177 (210)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=4.1e-132 Score=956.23 Aligned_cols=434 Identities=51% Similarity=0.946 Sum_probs=425.2
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcchhccccccccccC-CCcccceeEEeCCCCCeeccccccC
Q psy17297 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRSGP 79 (456)
Q Consensus 1 M~EiItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~-~~~~~pR~l~vD~e~~~i~~i~~~~ 79 (456)
|||||+||+||||||||.+||+++|.||+|+++|.+.+..+...++.++||+|+ .++|+||||+||+||+||+.+++++
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~ 80 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGP 80 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCc
Confidence 999999999999999999999999999999999998877777778999999999 8999999999999999999999999
Q ss_pred CCcccCCCceeeccCCcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCC
Q psy17297 80 YGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYP 159 (456)
Q Consensus 80 ~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp 159 (456)
|+.+|+|+|++.+++|+|||||+|+|+.|+++.|+++|+|||++|.||.||||+++||+|||||||+|+.|+|.|++|||
T Consensus 81 y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eyp 160 (443)
T COG5023 81 YGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYP 160 (443)
T ss_pred cccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCccc
Q psy17297 160 DRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 239 (456)
Q Consensus 160 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~~~ 239 (456)
||.+.+|+|+|.++.++++|||||++|+++.|.|+||+++++||++|+++|.+.+++++|+|.++|++||++++++|.++
T Consensus 161 kK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTtsl 240 (443)
T COG5023 161 KKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSL 240 (443)
T ss_pred hhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhhee
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhHHhhhhcccccCCcccccccCccCcCCcccccccCCHHHHHHhhhccCccccccCCCCCceeeeeeccccc
Q psy17297 240 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVACDPRHGKYLTVATIFRGE 319 (456)
Q Consensus 240 r~~~~~n~~l~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 319 (456)
||||++|.||++|.+||+|||++||+.++|+|+++..+..+++.|+.++++++|+++|+|.+|+|+.|+|++++.++||+
T Consensus 241 RfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~rG~ 320 (443)
T COG5023 241 RFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFRGD 320 (443)
T ss_pred ecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhhhccCCCCceeeeccCceeeeeecCCC---CCCceeEEEeecCcccHHHHHHHHHHHhhccccccchhh
Q psy17297 320 LSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAP---KGFKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHW 396 (456)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~p---~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~krAflH~ 396 (456)
+.++++.+.+.+++.|++.+|++|+|+++++++|..+| .+.+.++++|+|+|+|++.|+++.++|++||+|||||||
T Consensus 321 v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlhw 400 (443)
T COG5023 321 VDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHW 400 (443)
T ss_pred CCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcccccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999 678899999999999999999999999999999999999
Q ss_pred hccCCCChhhHHHHHHHHHHHHHHHHHHhhcCcccccc
Q psy17297 397 YTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVE 434 (456)
Q Consensus 397 Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~~~~~~ 434 (456)
|.++||||+||.||++++++|.++|++++++.++++.|
T Consensus 401 Y~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~~~ 438 (443)
T COG5023 401 YVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEE 438 (443)
T ss_pred HhhccCcccchhhHHHHHHHHHHHHHHhccccccchhh
Confidence 99999999999999999999999999999998866554
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=2.3e-112 Score=881.34 Aligned_cols=435 Identities=39% Similarity=0.751 Sum_probs=411.0
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcc--hhccccccccccC-CCcccceeEEeCCCCCeeccccc
Q psy17297 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSD--LQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRS 77 (456)
Q Consensus 1 M~EiItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~F~e~-~~~~~pR~l~vD~e~~~i~~i~~ 77 (456)
||||||||+||||||||.+||+++|+||+++++|....... ...++.++||+|+ +++|+||||+||+||++|+.++.
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 99999999999999999999999999999998886543321 2345678999999 89999999999999999999999
Q ss_pred cCCCcccCCCceeeccCCcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhh
Q psy17297 78 GPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREE 157 (456)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~de 157 (456)
++++++|+|++++.+++|+|||||+|||+.|+++.|+++|+||+++|+||+||||+++||++||||||+|++|+|.|+|+
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred CccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCc
Q psy17297 158 YPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITT 237 (456)
Q Consensus 158 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~ 237 (456)
||++++.+++|+|++..++++++|||++|+|++|.+++|++++|||++|+++|.+.++++.|+|.++|.|||++|+++|+
T Consensus 161 y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~ 240 (450)
T PLN00221 161 YGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240 (450)
T ss_pred cccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccc
Confidence 99999999999999767889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcchhHHhhhhcccccCCcccccccCccCcCCcccccccCCHHHHHHhhhccCccccccCCCCCceeeeeeccc
Q psy17297 238 CLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVACDPRHGKYLTVATIFR 317 (456)
Q Consensus 238 ~~r~~~~~n~~l~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 317 (456)
++||||++|.|++++++||||||++||++++++|+++.....+++++|.++++++|+++++++.++|+.|+|+|+++++|
T Consensus 241 s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~kyla~~~~~R 320 (450)
T PLN00221 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYR 320 (450)
T ss_pred cccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCCCcchHHHHHHHHc
Confidence 99999999999999999999999999999999999987777788899999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHhhhccCCCCceeeeccCceeeeeecCCCC--------CCceeEEEeecCcccHHHHHHHHHHHhhccc
Q psy17297 318 GELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPK--------GFKMSGTFIGNTTAIQGLFQRIMDQFCSMFR 389 (456)
Q Consensus 318 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~p~--------~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~ 389 (456)
|++.+.++.+.+.+++.++++.|++|+|+++++++|..+|. +.++++++++|+|+|..+|+++.++|++||+
T Consensus 321 G~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~~~~~~~~s~~~l~NstsI~~~f~~i~~~f~~mf~ 400 (450)
T PLN00221 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYA 400 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCccccccceeEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888889999999999999999988864 3458899999999999999999999999999
Q ss_pred cccchhhhccCCCChhhHHHHHHHHHHHHHHHHHHhhcCccccccc
Q psy17297 390 RKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEI 435 (456)
Q Consensus 390 krAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~~~~~~~ 435 (456)
||||||||+++||||+||.||+++|++|+++|+++.++..++++|+
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~~~~~~ 446 (450)
T PLN00221 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEGDE 446 (450)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9999999999999999999999999999999999987776655443
No 3
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=4.3e-111 Score=871.47 Aligned_cols=431 Identities=39% Similarity=0.780 Sum_probs=408.3
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcc--hhccccccccccC-CCcccceeEEeCCCCCeeccccc
Q psy17297 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSD--LQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRS 77 (456)
Q Consensus 1 M~EiItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~F~e~-~~~~~pR~l~vD~e~~~i~~i~~ 77 (456)
|||||+||+||||||||.+||+++++||+++++|.+..... ...++.++||+|+ +++|+||||+||+||++|++++.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 99999999999999999999999999999998887643221 2345678999999 88999999999999999999999
Q ss_pred cCCCcccCCCceeeccCCcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhh
Q psy17297 78 GPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREE 157 (456)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~de 157 (456)
++++.+|++++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~ 160 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCc
Q psy17297 158 YPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITT 237 (456)
Q Consensus 158 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~ 237 (456)
||++++++++|+|+...+++++++||++|+|++|.++||+++++||++|+++|.+.+++..|+|.++|++||++|+++|+
T Consensus 161 yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~ 240 (448)
T PTZ00335 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240 (448)
T ss_pred ccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhccccc
Confidence 99999999999999667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcchhHHhhhhcccccCCcccccccCccCcCCcccccccCCHHHHHHhhhccCccccccCCCCCceeeeeeccc
Q psy17297 238 CLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVACDPRHGKYLTVATIFR 317 (456)
Q Consensus 238 ~~r~~~~~n~~l~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 317 (456)
++||||+++.|++++++||||||++||++++++|+.+.....++.++|.++++++|+++++++.++|+.|+|+++++++|
T Consensus 241 ~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ls~~~~~R 320 (448)
T PTZ00335 241 SLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACCLMYR 320 (448)
T ss_pred ccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCCCccchHHHHHHHc
Confidence 99999999999999999999999999999999999987777788999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHhhhccCCCCceeeeccCceeeeeecCCCC--------CCceeEEEeecCcccHHHHHHHHHHHhhccc
Q psy17297 318 GELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPK--------GFKMSGTFIGNTTAIQGLFQRIMDQFCSMFR 389 (456)
Q Consensus 318 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~p~--------~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~ 389 (456)
|+..+.++.+.+.+++.++.+.|++|+|+++++++|+.+|. +..+++++++|+|+|..+|++++++|++||+
T Consensus 321 G~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lsNstsI~~~f~~i~~~f~~mf~ 400 (448)
T PTZ00335 321 GDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYA 400 (448)
T ss_pred CCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCCccccccceEEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988899999999999999999988774 3568899999999999999999999999999
Q ss_pred cccchhhhccCCCChhhHHHHHHHHHHHHHHHHHHhhcCccc
Q psy17297 390 RKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIED 431 (456)
Q Consensus 390 krAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~~~ 431 (456)
||||||||+++||||+||.||+++|++|+++|+++.++..++
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~~ 442 (448)
T PTZ00335 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADE 442 (448)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 999999999999999999999999999999999997665444
No 4
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=2.6e-110 Score=866.58 Aligned_cols=432 Identities=70% Similarity=1.238 Sum_probs=413.0
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcchhccccccccccC-CCcccceeEEeCCCCCeeccccccC
Q psy17297 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRSGP 79 (456)
Q Consensus 1 M~EiItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~-~~~~~pR~l~vD~e~~~i~~i~~~~ 79 (456)
|||||+||+||||||||.+||+++++||+++++|.+....+...++.++||+|+ .++|+||+|+||+||++|+.++.++
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 80 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGP 80 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccc
Confidence 999999999999999999999999999999988876543333335678999998 8999999999999999999999888
Q ss_pred CCcccCCCceeeccCCcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCC
Q psy17297 80 YGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYP 159 (456)
Q Consensus 80 ~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp 159 (456)
++.+|+|++++.+++|+|||||+|||+.|+++.++++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||
T Consensus 81 ~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~ 160 (445)
T PTZ00010 81 YGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYP 160 (445)
T ss_pred hhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCccc
Q psy17297 160 DRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 239 (456)
Q Consensus 160 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~~~ 239 (456)
++.+.+++|+|++..+++++++||++|++++|.+++|++++|||++|+++|.+.++++.|+|.++|+|||++|+++|+++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~~~ 240 (445)
T PTZ00010 161 DRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTCCL 240 (445)
T ss_pred ccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhccccccce
Confidence 99999999999976789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhHHhhhhcccccCCcccccccCccCcCCcccccccCCHHHHHHhhhccCccccccCCCCCceeeeeeccccc
Q psy17297 240 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVACDPRHGKYLTVATIFRGE 319 (456)
Q Consensus 240 r~~~~~n~~l~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 319 (456)
||||.+|.|++++++||||||++||++++++|+++.....+..+++.+|++++|++++++..++|++|+|+|+++++||+
T Consensus 241 Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la~~~~~RG~ 320 (445)
T PTZ00010 241 RFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGR 320 (445)
T ss_pred ecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHHHHHHHcCC
Confidence 99999999999999999999999999999999998777778899999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhhhccCCCCceeeeccCceeeeeecCCCCCCceeEEEeecCcccHHHHHHHHHHHhhccccccchhhhcc
Q psy17297 320 LSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPKGFKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTV 399 (456)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~p~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~krAflH~Y~~ 399 (456)
+.++++.+.+.+++.++++.|++|+|+++++++|+++|.+.++++++++|+|+|..+|+++.++|++||+||||||||++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~lsNstsi~~~~~~i~~~f~~m~~rrAflh~Y~~ 400 (445)
T PTZ00010 321 MSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSVTFIGNSTAIQEMFRRVGEQFTAMFRRKAFLHWYTG 400 (445)
T ss_pred CCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCcCccceEEEecCCcHHHHHHHHHHHHHHHHHhcCchhhhhhc
Confidence 99999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHhhcCcccc
Q psy17297 400 EGMDEFEFHEAGANVEDLICEYQQYQEASIEDT 432 (456)
Q Consensus 400 ~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~~~~ 432 (456)
+||||+||.||+++|++|+++|+++.+..++.+
T Consensus 401 eGmee~ef~EA~~~l~~li~~Y~~~~~~~~~~~ 433 (445)
T PTZ00010 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATVEEE 433 (445)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 999999999999999999999999987775544
No 5
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=7.4e-109 Score=857.73 Aligned_cols=428 Identities=69% Similarity=1.228 Sum_probs=409.6
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcchhccccccccccC-CCcccceeEEeCCCCCeeccccccC
Q psy17297 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRSGP 79 (456)
Q Consensus 1 M~EiItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~-~~~~~pR~l~vD~e~~~i~~i~~~~ 79 (456)
|||||+||+||||||||.+||+++++||++++++.+....+...+++++||+|. +++|+||+|+||+||++|+.++.++
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~ 80 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP 80 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcCc
Confidence 999999999999999999999999999999988876544443345678999998 8999999999999999999999999
Q ss_pred CCcccCCCceeeccCCcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCC
Q psy17297 80 YGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYP 159 (456)
Q Consensus 80 ~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp 159 (456)
++.+|++++++.+++|+|||||+|||+.|+++.|.++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||
T Consensus 81 ~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~ 160 (447)
T PLN00220 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (447)
T ss_pred cccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhcc
Confidence 98999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCccc
Q psy17297 160 DRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 239 (456)
Q Consensus 160 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~~~ 239 (456)
++.+++++|+|++..+++++++||++|+|++|.+++|+++++||++|+++|.+.+++..++|.++|.+||+.|+++|+++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~sl 240 (447)
T PLN00220 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240 (447)
T ss_pred ccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccchhh
Confidence 99999999999977889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhHHhhhhcccccCCcccccccCccCcCCcccccccCCHHHHHHhhhccCccccccCCCCCceeeeeeccccc
Q psy17297 240 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVACDPRHGKYLTVATIFRGE 319 (456)
Q Consensus 240 r~~~~~n~~l~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~ 319 (456)
||||.++.++++++++|||||++||+.++++|+.+.....++++++.++++++++++++++.+++.+|+|+++++++||+
T Consensus 241 RFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la~~~~~RG~ 320 (447)
T PLN00220 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320 (447)
T ss_pred ccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHHHHHHHcCC
Confidence 99999999999999999999999999999999998776778899999999999999999998999999999999999999
Q ss_pred CChHHHHHHHhhhccCCCCceeeeccCceeeeeecCCCCCCceeEEEeecCcccHHHHHHHHHHHhhccccccchhhhcc
Q psy17297 320 LSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPKGFKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTV 399 (456)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~p~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~krAflH~Y~~ 399 (456)
+.+.++.+.+.+++.++.++|++|+|+++++++|+++|.+.++++++|+|+|+|..+|+++.++|++||+||||||||++
T Consensus 321 ~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~rkAflh~Y~~ 400 (447)
T PLN00220 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG 400 (447)
T ss_pred CCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCCCcceeeEEecCchHHHHHHHHHHHHHHHHHhcCcchhhhcc
Confidence 99999999999988888899999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHhhcC
Q psy17297 400 EGMDEFEFHEAGANVEDLICEYQQYQEAS 428 (456)
Q Consensus 400 ~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~ 428 (456)
+||||+||.||+++|++|+++|+++....
T Consensus 401 ~Gmee~ef~ea~~~l~~li~~Y~~~~~~~ 429 (447)
T PLN00220 401 EGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 (447)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999887653
No 6
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=2e-107 Score=844.42 Aligned_cols=430 Identities=35% Similarity=0.671 Sum_probs=402.1
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcchhccccccccccC-CCcccceeEEeCCCCCeeccccccC
Q psy17297 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRSGP 79 (456)
Q Consensus 1 M~EiItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~-~~~~~pR~l~vD~e~~~i~~i~~~~ 79 (456)
|||||+||+||||||||.+||+++++||+++++|.+..+.+...++.++||+|+ .++|+||||+||+||++|++++.++
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 81 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSE 81 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccCc
Confidence 699999999999999999999999999999988876543333346778999998 8999999999999999999999888
Q ss_pred CCcccCCCceeeccC--CcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhh
Q psy17297 80 YGKMFRPDNFLHGQS--GAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREE 157 (456)
Q Consensus 80 ~~~~~~~~~~~~~~~--~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~de 157 (456)
++.+|+|++++.+++ |+|||||+||+ .|++..|+++|+||+++|.||++|||+++||++||||||+|++|+|.|+|+
T Consensus 82 ~~~lf~~~~~~~~~~~~gagnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~ 160 (454)
T PLN00222 82 YRNLYNHENIFVSDHGGGAGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDR 160 (454)
T ss_pred cccccCccceeecccCCCcccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhh
Confidence 889999999999986 69999999965 799999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeEEEEEecCC-CCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCC
Q psy17297 158 YPDRMINAFSVVPSP-KVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGIT 236 (456)
Q Consensus 158 yp~~~i~~~~v~P~~-~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t 236 (456)
||++++++++|+|++ ..+++++++||++|+|++|.+++|+++++||++|+++|.+.++++.|+|.+||+|||++|+++|
T Consensus 161 y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~~T 240 (454)
T PLN00222 161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSAST 240 (454)
T ss_pred cCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCCcc
Confidence 999999999999985 3578999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcchhHHhhhhcccccCCcccccccCccCcCCc-ccccccCCHHHHHHhhhccCccccccCCCC-----Ccee
Q psy17297 237 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPS-LIDYKAMSIGELTQELFDAKNMMVACDPRH-----GKYL 310 (456)
Q Consensus 237 ~~~r~~~~~n~~l~~l~~~L~P~p~~~fl~~s~~P~~~~~-~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~-----~~~l 310 (456)
+++||||.+|.|++++++||||||++||++++++|+.... ...++..++.++++++|++++++..++|+. |+|+
T Consensus 241 ~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~~~~~~k~l 320 (454)
T PLN00222 241 TTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYI 320 (454)
T ss_pred cccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeecCCccccccccchH
Confidence 9999999999999999999999999999999999997652 345677899999999999999999898887 9999
Q ss_pred eeeecccccCChHHHHHHHhhhccCCCCceeeeccCceeeeeecCCCC---CCceeEEEeecCcccHHHHHHHHHHHhhc
Q psy17297 311 TVATIFRGELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPK---GFKMSGTFIGNTTAIQGLFQRIMDQFCSM 387 (456)
Q Consensus 311 s~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~p~---~~~~s~~~l~Nst~i~~~l~~l~~~~~~m 387 (456)
|+++++||++.+.++.+.+.+++.++++.|++|+|+++++++|.++|. +.+.++++|+|+|+|..+|+++.++|++|
T Consensus 321 a~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~~f~~m 400 (454)
T PLN00222 321 SILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLANHTSIRHLFSKCLSQYDKL 400 (454)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888999999999999999999884 56789999999999999999999999999
Q ss_pred cccccchhhhccCCCC----hhhHHHHHHHHHHHHHHHHHHhhcCccc
Q psy17297 388 FRRKAFLHWYTVEGMD----EFEFHEAGANVEDLICEYQQYQEASIED 431 (456)
Q Consensus 388 ~~krAflH~Y~~~Gme----e~eF~Ea~~~l~~l~~~Y~~~~~~~~~~ 431 (456)
|+||||||||+++||+ |+||.||+++|++|+++|+++....+.+
T Consensus 401 f~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~~~~~~~y~~ 448 (454)
T PLN00222 401 RKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACESPDYIK 448 (454)
T ss_pred HhhCccceeecCCCcccCcchhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999993 8999999999999999999987666543
No 7
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=2.3e-107 Score=839.88 Aligned_cols=419 Identities=38% Similarity=0.728 Sum_probs=397.3
Q ss_pred EeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcchhccccccccccC-CCcccceeEEeCCCCCeeccccccCC
Q psy17297 2 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRSGPY 80 (456)
Q Consensus 2 ~EiItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~-~~~~~pR~l~vD~e~~~i~~i~~~~~ 80 (456)
||||+||+||||||||.+||+++++||+++++|...++.+...++.++||+|. +++|+||||+||+||++|++++.+++
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~ 80 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEY 80 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCcc
Confidence 79999999999999999999999999999988876544333456778999998 89999999999999999999999888
Q ss_pred CcccCCCceeeccC--CcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhC
Q psy17297 81 GKMFRPDNFLHGQS--GAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEY 158 (456)
Q Consensus 81 ~~~~~~~~~~~~~~--~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~dey 158 (456)
+.+|+|++++.+++ |+|||||+||+ .|++..|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+|
T Consensus 81 ~~lf~~~~~~~~~~~~gagnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y 159 (431)
T cd02188 81 RNLYNPENIFLSKHGGGAGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRY 159 (431)
T ss_pred ccccCccceEeeccCCCccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHc
Confidence 89999999999987 99999999965 7999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeEEEEEecCCCC-CCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCc
Q psy17297 159 PDRMINAFSVVPSPKV-SDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITT 237 (456)
Q Consensus 159 p~~~i~~~~v~P~~~~-~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~ 237 (456)
|++.+++++|+|++.. +++++++||++|+|++|.+++|+++++||++|+++|.+.++++.|+|.++|++||++|+++|+
T Consensus 160 ~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~t~ 239 (431)
T cd02188 160 PKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSASTT 239 (431)
T ss_pred CcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCccc
Confidence 9999999999998543 588999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcchhHHhhhhcccccCCcccccccCccCcCCc-ccccccCCHHHHHHhhhccCccccccCC-CCCceeeeeec
Q psy17297 238 CLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPS-LIDYKAMSIGELTQELFDAKNMMVACDP-RHGKYLTVATI 315 (456)
Q Consensus 238 ~~r~~~~~n~~l~~l~~~L~P~p~~~fl~~s~~P~~~~~-~~~~~~~t~~~l~~~~~~~~~~~~~~~~-~~~~~ls~~~~ 315 (456)
++||||.+|.|++++++||||||++||++++++|+.+.. ...+...+|.++++++|+++++|+.+++ ++|+|+|++++
T Consensus 240 ~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~k~la~~~~ 319 (431)
T cd02188 240 TLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGCYISILNI 319 (431)
T ss_pred ceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccchhHHHHHH
Confidence 999999999999999999999999999999999999877 5777889999999999999999999999 89999999999
Q ss_pred ccccCChHHHHHHHhhhccCCCCceeeeccCceeeeeecCCCC---CCceeEEEeecCcccHHHHHHHHHHHhhcccccc
Q psy17297 316 FRGELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPK---GFKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKA 392 (456)
Q Consensus 316 ~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~p~---~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~krA 392 (456)
+||++.++++.+.+.+++.+..+.|++|+|+++++++|+++|. +.+.++++++|+|+|.++|+++.++|++||+|||
T Consensus 320 ~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~kf~~mf~krA 399 (431)
T cd02188 320 IQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYVPTAHRVSGLMLANHTSIASLFERILKQFDKLRKRRA 399 (431)
T ss_pred HcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCccCCCCceeEEEecCChHHHHHHHHHHHHHHHHHhhCc
Confidence 9999999999999999988888889999999999999999885 4678999999999999999999999999999999
Q ss_pred chhhhccCCCC---hhhHHHHHHHHHHHHHHH
Q psy17297 393 FLHWYTVEGMD---EFEFHEAGANVEDLICEY 421 (456)
Q Consensus 393 flH~Y~~~Gme---e~eF~Ea~~~l~~l~~~Y 421 (456)
|||||+++||| |+||.||+++|++|+++|
T Consensus 400 flH~Y~~eGme~~~e~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 400 FLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431 (431)
T ss_pred hhhhccCcCccccchhHHHHHHHHHHHHHHhC
Confidence 99999999999 999999999999999998
No 8
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=7.7e-107 Score=837.67 Aligned_cols=423 Identities=74% Similarity=1.277 Sum_probs=404.0
Q ss_pred EeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcchhccccccccccC-CCcccceeEEeCCCCCeeccccccCC
Q psy17297 2 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRSGPY 80 (456)
Q Consensus 2 ~EiItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~-~~~~~pR~l~vD~e~~~i~~i~~~~~ 80 (456)
||||+||+||||||||.+||+++++||++++++.+....+...+..++||+|. +++|+||+|+||+||++++.++.+++
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~ 80 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPF 80 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcCcc
Confidence 79999999999999999999999999999888766433333335678999998 89999999999999999999988888
Q ss_pred CcccCCCceeeccCCcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCC
Q psy17297 81 GKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPD 160 (456)
Q Consensus 81 ~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~ 160 (456)
+.+|++++++.+++|+|||||+||++.|++++|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||+
T Consensus 81 ~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~ 160 (425)
T cd02187 81 GQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPD 160 (425)
T ss_pred cceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCcccc
Q psy17297 161 RMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLR 240 (456)
Q Consensus 161 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~~~r 240 (456)
+.+++++|+|+...+++++++||++|+|++|.+++|++++|||++|+++|.+.+++..++|.++|++||++|+++|+++|
T Consensus 161 ~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s~R 240 (425)
T cd02187 161 RIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLR 240 (425)
T ss_pred cceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhccccccceeee
Confidence 99999999998666799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhHHhhhhcccccCCcccccccCccCcCCcccccccCCHHHHHHhhhccCccccccCCCCCceeeeeecccccC
Q psy17297 241 FPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVACDPRHGKYLTVATIFRGEL 320 (456)
Q Consensus 241 ~~~~~n~~l~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~ 320 (456)
|||.+|.|++++++||||||++||++++++|+++.....+..+++.+|++++|++++++..++|++|+|+|+++++||++
T Consensus 241 fpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~ 320 (425)
T cd02187 241 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTAAAIFRGRV 320 (425)
T ss_pred cCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999987777788899999999999999999889999999999999999999
Q ss_pred ChHHHHHHHhhhccCCCCceeeeccCceeeeeecCCCCCCceeEEEeecCcccHHHHHHHHHHHhhccccccchhhhccC
Q psy17297 321 SVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPKGFKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVE 400 (456)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~p~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~krAflH~Y~~~ 400 (456)
.+.++.+.+.+++.+..+.|++|+|+++++.+|+++|.+.++++++|+|+|+|..+|++++++|++||+||||||||+++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~kkAflh~Y~~~ 400 (425)
T cd02187 321 SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGE 400 (425)
T ss_pred CHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCCCcceeEEEecCCcHHHHHHHHHHHHHHHHHhcCcchhhhhcc
Confidence 99999999999988889999999999999999999999899999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHH
Q psy17297 401 GMDEFEFHEAGANVEDLICEYQQY 424 (456)
Q Consensus 401 Gmee~eF~Ea~~~l~~l~~~Y~~~ 424 (456)
||||+||.||+++|++|+++|+++
T Consensus 401 G~ee~ef~Ea~~~l~~li~~Y~~~ 424 (425)
T cd02187 401 GMDEMEFTEAESNMNDLVSEYQQY 424 (425)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999976
No 9
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=6.4e-107 Score=839.59 Aligned_cols=423 Identities=39% Similarity=0.773 Sum_probs=401.8
Q ss_pred EeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcc--hhccccccccccC-CCcccceeEEeCCCCCeecccccc
Q psy17297 2 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSD--LQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRSG 78 (456)
Q Consensus 2 ~EiItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~F~e~-~~~~~pR~l~vD~e~~~i~~i~~~ 78 (456)
||||+||+||||||||.+||+++++||+++++|.+.++.. ...+..++||+|+ +++|+||||+||+||++|++++.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 7999999999999999999999999999998887644322 2345778999998 899999999999999999999988
Q ss_pred CCCcccCCCceeeccCCcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhC
Q psy17297 79 PYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEY 158 (456)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~dey 158 (456)
+++.+|++++++.+++|+|||||+||++.|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+|
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCcc
Q psy17297 159 PDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTC 238 (456)
Q Consensus 159 p~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~~ 238 (456)
|++++++++|+|+...+++++++||++|+|++|.+++|+++++||++|+++|++.++++.++|+++|++||++|+++|++
T Consensus 161 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~ 240 (434)
T cd02186 161 GKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240 (434)
T ss_pred CccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccc
Confidence 99999999999996667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchhHHhhhhcccccCCcccccccCccCcCCcccccccCCHHHHHHhhhccCccccccCCCCCceeeeeecccc
Q psy17297 239 LRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVACDPRHGKYLTVATIFRG 318 (456)
Q Consensus 239 ~r~~~~~n~~l~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG 318 (456)
+||||.++.|+++++++|||||++||++++++|+++.....++.++|.+|++++|+++++|+.++++.|+|+++++++||
T Consensus 241 ~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~la~~~~~RG 320 (434)
T cd02186 241 LRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRG 320 (434)
T ss_pred eecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHHHHHHHHcC
Confidence 99999999999999999999999999999999999877777888999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHhhhccCCCCceeeeccCceeeeeecCCCC--------CCceeEEEeecCcccHHHHHHHHHHHhhcccc
Q psy17297 319 ELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPK--------GFKMSGTFIGNTTAIQGLFQRIMDQFCSMFRR 390 (456)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~p~--------~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~k 390 (456)
++.++++.+.+.+++.++.+.|++|+|+++++.+|+.+|. +.++++++++|+|+|..+|+++.++|++||+|
T Consensus 321 ~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~f~~i~~~f~~mf~r 400 (434)
T cd02186 321 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSK 400 (434)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCCccccccceEEEEecCchHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999888889999999999999999998774 34579999999999999999999999999999
Q ss_pred ccchhhhccCCCChhhHHHHHHHHHHHHHHHHHH
Q psy17297 391 KAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQY 424 (456)
Q Consensus 391 rAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~ 424 (456)
|||||||+++||||+||.||+++|++|+++|+++
T Consensus 401 kAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~ 434 (434)
T cd02186 401 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 434 (434)
T ss_pred cchhhhhcCcCCchHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999863
No 10
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=5.3e-106 Score=834.24 Aligned_cols=416 Identities=35% Similarity=0.669 Sum_probs=393.2
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcC-CCCCCCCCCCcchhccccccccccC------CC--cccceeEEeCCCCCe
Q psy17297 1 MREIVHIQVGQCGNQTGVKFWEEISQEHG-LNEMGRYEGTSDLQLERIQVYYNEA------QG--GYIPRAILVDLEPGT 71 (456)
Q Consensus 1 M~EiItiq~Gq~gnqiG~~~w~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~F~e~------~~--~~~pR~l~vD~e~~~ 71 (456)
|||||+||+||||||||.+||+++|+||+ +++++.+ .+++++||++. .+ +|+||||+||+||++
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~-------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~v 73 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY-------DDARDSFFENVSENVNRPGKENLKARAVLVDMEEGV 73 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc-------cccccceecccccccccCCCccccCcccccCCCccH
Confidence 99999999999999999999999999999 6766654 24668999853 23 499999999999999
Q ss_pred eccccccCCCcccCCCceeeccCCcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHH
Q psy17297 72 MDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLL 151 (456)
Q Consensus 72 i~~i~~~~~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~ll 151 (456)
|++++.++++.+|++++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+
T Consensus 74 i~~i~~~~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~ll 153 (465)
T PTZ00387 74 LNQILKSPLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRIL 153 (465)
T ss_pred HHHhhcCCcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHH
Confidence 99999988889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCeeeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCC-------------
Q psy17297 152 TKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNS------------- 218 (456)
Q Consensus 152 e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~------------- 218 (456)
|.|+|+||++.+++++|||+ ..++++++|||++|+|++|.++||+++++||++|+++|.+.+++..
T Consensus 154 e~l~d~y~~~~~~~~~V~P~-~~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~~~ 232 (465)
T PTZ00387 154 GMLEDEFPHVFRFCPVVFPS-AVDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGPQ 232 (465)
T ss_pred HHHHHhcccCceeeeEecCC-CCCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCcccccccccccccccc
Confidence 99999999999999999998 5688999999999999999999999999999999999988877663
Q ss_pred --------------CCcccccHHHHHhhccCCccccCCCCcchhHHhhhhcccccCCcccccccCccCcCCcccccccCC
Q psy17297 219 --------------PSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMS 284 (456)
Q Consensus 219 --------------~~~~~~N~via~~i~~~t~~~r~~~~~n~~l~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t 284 (456)
++|.++|.+||++|+++|+++||||.+|.|++++.+||||||++||++++++|+.+.....+...+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~~~~~s 312 (465)
T PTZ00387 233 PHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVGPRR 312 (465)
T ss_pred ccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhcccccCC
Confidence 789999999999999999999999999999999999999999999999999999887777778899
Q ss_pred HHHHHHhhhccCccccccCCCCCceeeeeecccccCChHHHHHHHhhhccCCCCceeeeccCceeeeeecCCCCCCceeE
Q psy17297 285 IGELTQELFDAKNMMVACDPRHGKYLTVATIFRGELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPKGFKMSG 364 (456)
Q Consensus 285 ~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~p~~~~~s~ 364 (456)
|.+|++++|+++++|+.+++..|+|+|+++++||+..+.++.+.+.+++. .+.|++|+|+++++++|+++|.+.++++
T Consensus 313 ~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk~--~~~f~~W~p~~~~~~~~~~~~~~~~~s~ 390 (465)
T PTZ00387 313 LDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLKE--QLNMIYWNEDGFKTGLCNVSPLGQPYSL 390 (465)
T ss_pred HHHHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHhc--cccccccCCCceEEEeeccCCCCCceeE
Confidence 99999999999999999999999999999999999889999999888864 4899999999999999999999999999
Q ss_pred EEeecCcccHHHHHHHHHHHhhccccccchhhhccCCCChhhHHHHHHHHHHHHHHHHHHhhc
Q psy17297 365 TFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEA 427 (456)
Q Consensus 365 ~~l~Nst~i~~~l~~l~~~~~~m~~krAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~ 427 (456)
++++|+|+|..+|++++++|++||+||||||||+ +|||++||.||+++|++|+++|+++...
T Consensus 391 ~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~-egmee~eF~ea~~~l~~li~~Y~~~~~~ 452 (465)
T PTZ00387 391 LCLANNCCIRNKFESMLERFNKLYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYLQTA 452 (465)
T ss_pred EEecCChHHHHHHHHHHHHHHHHHhhcchHHhhh-cccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999 8999999999999999999999999733
No 11
>KOG1374|consensus
Probab=100.00 E-value=1.2e-100 Score=739.01 Aligned_cols=428 Identities=36% Similarity=0.708 Sum_probs=401.2
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcchhccccccccccC-CCcccceeEEeCCCCCeeccccccC
Q psy17297 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRSGP 79 (456)
Q Consensus 1 M~EiItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~-~~~~~pR~l~vD~e~~~i~~i~~~~ 79 (456)
||||||||+||||||||.+||+.+|.||+|.++|...+..+...++.++||++. ++.|+||||+||+||+||+.+.+++
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~~ 81 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSSP 81 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhCccccccceeeccCCccccceeeeccchHHHhccccch
Confidence 689999999999999999999999999999999997766666778889999999 8999999999999999999999999
Q ss_pred CCcccCCCceeec--cCCcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhh
Q psy17297 80 YGKMFRPDNFLHG--QSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREE 157 (456)
Q Consensus 80 ~~~~~~~~~~~~~--~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~de 157 (456)
++.+|+++|+... +.|+|||||.||. .|++..|+|+|.|+|++|.||+|.||+++||++||||||+||.|+|.|+|+
T Consensus 82 ~s~l~n~eni~~s~~ggGAGNNWA~GY~-~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~dr 160 (448)
T KOG1374|consen 82 YSGLYNPENIFLSDHGGGAGNNWASGYS-QGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDR 160 (448)
T ss_pred hhcccCccceEEecCCCCcccccccccc-cchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHh
Confidence 9999999998764 5689999999976 599999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeEEEEEecCC-CCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCC
Q psy17297 158 YPDRMINAFSVVPSP-KVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGIT 236 (456)
Q Consensus 158 yp~~~i~~~~v~P~~-~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t 236 (456)
||||.+.+++|||.. ..+|++|||||++|+|++|.+.+|+++++||.+|.++|.+.+.+++|+|.++|.+||..|++.|
T Consensus 161 ypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~st 240 (448)
T KOG1374|consen 161 YPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSAST 240 (448)
T ss_pred chhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999983 4789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcchhHHhhhhcccccCCcccccccCccCcCCccccc--ccCCHHHHHHhhhccCccccccCC---CCCceee
Q psy17297 237 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDY--KAMSIGELTQELFDAKNMMVACDP---RHGKYLT 311 (456)
Q Consensus 237 ~~~r~~~~~n~~l~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~--~~~t~~~l~~~~~~~~~~~~~~~~---~~~~~ls 311 (456)
.++||||+++.++..+...|+|+|.+||+.+++.|+++...... +..++.+.+++++.++++|....+ ....|++
T Consensus 241 ~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~~s 320 (448)
T KOG1374|consen 241 TTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCYIS 320 (448)
T ss_pred ccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhccccccCCcchHh
Confidence 99999999999999999999999999999999999998765544 778899999999999999988755 3346889
Q ss_pred eeecccccCChHHHHHHHhhhccCCCCceeeeccCceeeeeecCCCC---CCceeEEEeecCcccHHHHHHHHHHHhhcc
Q psy17297 312 VATIFRGELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPK---GFKMSGTFIGNTTAIQGLFQRIMDQFCSMF 388 (456)
Q Consensus 312 ~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~p~---~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~ 388 (456)
...++.|.+.+.++...+.+++.++...|..|.|.++.+.+....|+ .++.|+.+|+|+|+|...|++++.+||+|+
T Consensus 321 i~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~~~vSglml~N~t~i~~lfe~~~~qydklr 400 (448)
T KOG1374|consen 321 ILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRAHRVSGLMLANSTSIVSLFERILGQYDKLR 400 (448)
T ss_pred HHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccccceeeeeeccchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988776665 577899999999999999999999999999
Q ss_pred ccccchhhhccCCCChh---hHHHHHHHHHHHHHHHHHHhhcCc
Q psy17297 389 RRKAFLHWYTVEGMDEF---EFHEAGANVEDLICEYQQYQEASI 429 (456)
Q Consensus 389 ~krAflH~Y~~~Gmee~---eF~Ea~~~l~~l~~~Y~~~~~~~~ 429 (456)
+||||+|.|.++||+++ ||.|+++.+++++++|..+....+
T Consensus 401 k~~AFld~y~k~~if~~~~~efdesr~ivq~lv~eY~a~~~~~Y 444 (448)
T KOG1374|consen 401 KKRAFLDQYRKFDIFEDDLDEFDESREIVQQLVDEYHAAEQPDY 444 (448)
T ss_pred HHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 99999999999999999 999999999999999998866544
No 12
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=1.1e-98 Score=780.59 Aligned_cols=409 Identities=28% Similarity=0.537 Sum_probs=377.4
Q ss_pred EEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcchhccccccccccC-CCcccceeEEeCCCCCeeccccccCC--
Q psy17297 4 IVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRSGPY-- 80 (456)
Q Consensus 4 iItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~-~~~~~pR~l~vD~e~~~i~~i~~~~~-- 80 (456)
||+||+||||||||.+||+++++||++++++.+. ...+..++||.|. +++|+||+|+||+||++|++++.+..
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~----~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~~ 77 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK----YERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGG 77 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc----ccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCCc
Confidence 8999999999999999999999999998776543 2245678999998 89999999999999999999988653
Q ss_pred CcccCCCceeeccCCcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCC
Q psy17297 81 GKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPD 160 (456)
Q Consensus 81 ~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~ 160 (456)
+++|++++++.+++|+|||||+|||+.|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||+
T Consensus 78 ~~~f~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~ 157 (446)
T cd02189 78 TWKYDKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPE 157 (446)
T ss_pred ccccCchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCcccc
Q psy17297 161 RMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLR 240 (456)
Q Consensus 161 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~~~r 240 (456)
+++++++|+|+. .+++++|+||++|+|++|.+++|+++++||++|.++|.+.++++.++|.++|++||++|+++|+|.|
T Consensus 158 ~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~~r 236 (446)
T cd02189 158 SLLLNIVVWPYT-TGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQPSL 236 (446)
T ss_pred cceeeeeccCCC-CCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhHhh
Confidence 999999999984 7899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-C-------CCcchhHHhhhhcccccCCcccccccCccCcCCcccccccCCHHHHHHhhh---ccCccccc--------
Q psy17297 241 F-P-------GQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELF---DAKNMMVA-------- 301 (456)
Q Consensus 241 ~-~-------~~~n~~l~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~---~~~~~~~~-------- 301 (456)
+ + |..+.++++++++|||||++||++++++|+++.....++..+|.+++++++ .+++.+..
T Consensus 237 ~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~~~~ 316 (446)
T cd02189 237 DSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWTVRP 316 (446)
T ss_pred ccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhhcccccccccccccccc
Confidence 7 5 336899999999999999999999999999988777888999999999876 46665544
Q ss_pred -----------cCCCCCceeeeeecccccCChHHHHHHHhhhccCCCCceeeeccCceeeeeecCCCC--CCceeEEEee
Q psy17297 302 -----------CDPRHGKYLTVATIFRGELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPK--GFKMSGTFIG 368 (456)
Q Consensus 302 -----------~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~p~--~~~~s~~~l~ 368 (456)
+++..++|+++++++||+....++...+ ++.+.|++|+|+++++.+|..+|. +.++++++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~-----~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~s~~~l~ 391 (446)
T cd02189 317 EGSAASLLSGNKSTHFNKSLANLLILRGKDVTSADERKF-----RDPLLYVNWSPSPVRFSISSHKRSFSKYEKSVTLVS 391 (446)
T ss_pred ccccccccccccCCcccceeeeeeeeeCCCchHHHHHHH-----hccCcCCCcCCCCEeeeecCCCCCcCCcceeEEEEe
Confidence 4567899999999999997777766543 356889999999999999988875 4789999999
Q ss_pred cCcccHHHHHHHHHHHhhccccccchhhhccCCCChhhHHHHHHHHHHHHHHHH
Q psy17297 369 NTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQ 422 (456)
Q Consensus 369 Nst~i~~~l~~l~~~~~~m~~krAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~ 422 (456)
|+|+|..+|++++++|++||+||||||||+++||||+||.||+++|++|+++|+
T Consensus 392 Nst~i~~~l~~i~~~f~~mf~~rAflH~Y~~~Gmee~ef~eA~~~l~~li~~Y~ 445 (446)
T cd02189 392 NSQTIIDPLDNILEKAWNMFASGAYLHQYEKYGLEEEDFLDAFATLEQIIASYK 445 (446)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCcchhhhhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999996
No 13
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=7.4e-99 Score=766.95 Aligned_cols=379 Identities=37% Similarity=0.716 Sum_probs=365.2
Q ss_pred EeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcchhccccccccccCCCcccceeEEeCCCCCeeccccccCCC
Q psy17297 2 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYG 81 (456)
Q Consensus 2 ~EiItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~pR~l~vD~e~~~i~~i~~~~~~ 81 (456)
||||+||+||||||||.+||+++++|| |+||+|+||+||++|++++.++++
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh-----------------------------~~pR~v~iD~e~~~i~~i~~~~~~ 51 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH-----------------------------LKARAVLIDMEEGVVNEILKGPLR 51 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh-----------------------------cCCcceeccCChhHHHHHhcCccc
Confidence 799999999999999999999999997 479999999999999999998888
Q ss_pred cccCCCceeeccCCcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCCe
Q psy17297 82 KMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDR 161 (456)
Q Consensus 82 ~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~~ 161 (456)
++|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||++
T Consensus 52 ~~~~~~~~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~ 131 (379)
T cd02190 52 DLFDETQLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEV 131 (379)
T ss_pred cccCcccccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCccccC
Q psy17297 162 MINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRF 241 (456)
Q Consensus 162 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~~~r~ 241 (456)
.+++++|+|+. .++++++|||++|+|++|.+++|+++++||++|. +|.++|++||++|+++|+++||
T Consensus 132 ~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~~~~~N~~ia~~i~~~t~~~rf 198 (379)
T cd02190 132 YRFVTSVYPSA-DDDVITSPYNSVLALRELIEHADCVLPIENQALV------------PFDAMNSIVANLLLNLTSSMRF 198 (379)
T ss_pred ceEEEeecCCC-CCCceecccHHHHHHHHHHHhCCeeEEeccHHHH------------HHHHHHHHHHhhhcCccceeec
Confidence 99999999995 5888999999999999999999999999999996 7999999999999999999999
Q ss_pred CCCcchhHHhhhhcccccCCcccccccCccCcCCcccccccCCHHHHHHhhhccCccccccCCCCCceeeeeecccccCC
Q psy17297 242 PGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVACDPRHGKYLTVATIFRGELS 321 (456)
Q Consensus 242 ~~~~n~~l~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~ 321 (456)
||.+|.|++++.++|||||++||++++++|+++.....+...++.++++++++++++|+.+++..|+|+++++++||+..
T Consensus 199 ~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG~~~ 278 (379)
T cd02190 199 EGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRGNVS 278 (379)
T ss_pred ccccccchhhhccccccCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999877667788999999999999999999899999999999999999999
Q ss_pred hHHHHHHHhhhccCCCCceeeeccCceeeeeecCCCCCCceeEEEeecCcccHHHHHHHHHHHhhccccccchhhhccCC
Q psy17297 322 VKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPKGFKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEG 401 (456)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~p~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~krAflH~Y~~~G 401 (456)
+.++.+.+.+++.+ ..|++|+|+++++++|+++|.+.++++++++|+|+|..+|++++++|++||+||||||||+++|
T Consensus 279 ~~ei~~~~~~l~~~--~~fv~W~p~~~~~~~~~~~~~~~~~s~~~lsNsTsI~~~f~~i~~~f~~mf~krAflh~Y~~eG 356 (379)
T cd02190 279 VSDLRRNIERLKPK--LKFVKWNQEGWKIGLCSVPPVGHSYSLLCLANNTCIKGTFTELKERFMKLYKRKAHLHHYTQVG 356 (379)
T ss_pred HHHHHHHHHHHhcc--CcCcCcCCCcEEEeecccCCCCcceeEEEecCccHHHHHHHHHHHHHHHHHhcccchhhhhCCC
Confidence 99999998888765 7899999999999999999988899999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHH
Q psy17297 402 MDEFEFHEAGANVEDLICEYQQY 424 (456)
Q Consensus 402 mee~eF~Ea~~~l~~l~~~Y~~~ 424 (456)
|||+||.||+++|++++++|+++
T Consensus 357 ~ee~ef~ea~~~l~~li~~Y~~l 379 (379)
T cd02190 357 MEQGDFTEALESISNLIDEYDYL 379 (379)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999864
No 14
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=5.7e-91 Score=713.11 Aligned_cols=381 Identities=49% Similarity=0.910 Sum_probs=364.3
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcchhccccccccccCCCcccceeEEeCCCCCeeccccccCCCc
Q psy17297 3 EIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGK 82 (456)
Q Consensus 3 EiItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~pR~l~vD~e~~~i~~i~~~~~~~ 82 (456)
|||+||+||||||||.+||+++ |+||+||++++.++.++.+.
T Consensus 1 eii~i~vGq~G~qig~~~w~~~--------------------------------------i~iD~e~~~i~~i~~~~~~~ 42 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL--------------------------------------ILVDLDPRVINEILQGQLSK 42 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH--------------------------------------HcccCCcchhhhhhcccccc
Confidence 8999999999999999999965 89999999999999888888
Q ss_pred ccCCCceeeccCCcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCCee
Q psy17297 83 MFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRM 162 (456)
Q Consensus 83 ~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~~~ 162 (456)
+|++++++.+++|+||||++||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++++|.|+|+||++.
T Consensus 43 ~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~ 122 (382)
T cd06059 43 LFDPNQLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKIL 122 (382)
T ss_pred cCCcccEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCccccCC
Q psy17297 163 INAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFP 242 (456)
Q Consensus 163 i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~~~r~~ 242 (456)
+++++|+|+...+++++++||++|+|++|.++||++++++|++|.++|.+.+.+..++|+++|++||++|+++|.++|+|
T Consensus 123 i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~r~~ 202 (382)
T cd06059 123 INTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLRFP 202 (382)
T ss_pred eEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhcccccccccC
Confidence 99999999965556899999999999999999999999999999999999888889999999999999999999999999
Q ss_pred CCcchhHHhhhhcccccCCcccccccCccCcCCcccccccCCHHHHHHhhhccCccccccCCCCCceeeeeecccccCCh
Q psy17297 243 GQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVACDPRHGKYLTVATIFRGELSV 322 (456)
Q Consensus 243 ~~~n~~l~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~ 322 (456)
|.+|.|+++++++|||||++||++++++|+++.....+...++.+++++++.+++++..++++.++|+++++++||+...
T Consensus 203 g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~~~ 282 (382)
T cd06059 203 GYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALIFRGDVFQ 282 (382)
T ss_pred CCcCCCHHHHhhhcCCCCCceeccccccccccchhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHHHHHhCCCCH
Confidence 99999999999999999999999999999998766667888999999999999999999999999999999999999989
Q ss_pred HHHHHHHhhhccCCCCceeeeccCceeeeeecCCCC-CCceeEEEeecCcccHHHHHHHHHHHhhccccccchhhhccCC
Q psy17297 323 KEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPK-GFKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEG 401 (456)
Q Consensus 323 ~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~p~-~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~krAflH~Y~~~G 401 (456)
.++.+.+.+++.+.... +|+|+++++.+|+++|. +.++++++++|+|+|..+|++++++|++||+||||||||+++|
T Consensus 283 ~~v~~~~~~~~~~~~~~--~w~p~~~~~~~~~~~~~~~~~~s~~~l~Nstsi~~~l~~i~~~f~~m~~~rAflh~Y~~~G 360 (382)
T cd06059 283 SEIQEAINKLKNKLNIQ--SWIPDGFKVSNCKKPPRAELGKSALFLSNSTSIGESLERLIEKFDKLYKRKAFLHWYLGEG 360 (382)
T ss_pred HHHHHHHHHHHHhcccc--cCCCCcEEEEecCCCCCcCcceeEEEecCchHHHHHHHHHHHHHHHHHhhCcchhhhcCcC
Confidence 99999888887665444 89999999999999998 8899999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHH
Q psy17297 402 MDEFEFHEAGANVEDLICEYQQ 423 (456)
Q Consensus 402 mee~eF~Ea~~~l~~l~~~Y~~ 423 (456)
|||+||.||+++|++++++|++
T Consensus 361 ~ee~ef~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 361 MDEMEFTEAESSLEDLIQSYQE 382 (382)
T ss_pred CchHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999973
No 15
>KOG1376|consensus
Probab=100.00 E-value=6.1e-88 Score=649.19 Aligned_cols=403 Identities=40% Similarity=0.755 Sum_probs=381.1
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcch--hccccccccccC-CCcccceeEEeCCCCCeeccccc
Q psy17297 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDL--QLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRS 77 (456)
Q Consensus 1 M~EiItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~F~e~-~~~~~pR~l~vD~e~~~i~~i~~ 77 (456)
|||||.|++||+|.|||++.|+++|.||++.+++..+.+.+. ..+.+++||.++ .++++||+++||+||. ||+++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 999999999999999999999999999999999998764432 244678999998 8999999999999999 999999
Q ss_pred cCCCcccCCCceeeccCCcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhh
Q psy17297 78 GPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREE 157 (456)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~de 157 (456)
|+|+.+|||++++.|+++++||+|||+|+.|+|.+|..+++||+.++.|..||||.+|||+|||||||+++.++|.+..+
T Consensus 80 G~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~ 159 (407)
T KOG1376|consen 80 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVD 159 (407)
T ss_pred cchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCc
Q psy17297 158 YPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITT 237 (456)
Q Consensus 158 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~ 237 (456)
|+|+..+.|++||.+..+..+++|||++|+.+...+++|+.+++||++++++|++++.+++|.|.++|++|+++++++|.
T Consensus 160 ~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsita 239 (407)
T KOG1376|consen 160 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239 (407)
T ss_pred hhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhccccc
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcchhHHhhhhcccccCCcccccccCccCcCCcccccccCCHHHHHHhhhccCccccccCCCCCceeeeeeccc
Q psy17297 238 CLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVACDPRHGKYLTVATIFR 317 (456)
Q Consensus 238 ~~r~~~~~n~~l~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R 317 (456)
++||.|.+|.||.+|++||+||| + ++|+.+..+..+++.++.+++.+.|.+.++|++|||++|+|+++++++|
T Consensus 240 Slrf~g~lnvdl~efqTnlVpyp----l---yap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP~~gkyma~cllyr 312 (407)
T KOG1376|consen 240 SLRFDGALNVDLTEFQTNLVPYP----L---YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 312 (407)
T ss_pred ccccCCcccccHHHHHhhCCCCc----c---cccchhhcccchhhhhHHhhccccccccccccccCCccchHHHHHHhcc
Confidence 99999999999999999999999 2 8999998888889999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHhhhccCCCCceeeeccCceeeeeecCCCCCCceeEEEeecCcccHHHHHHHHHHHhhccccccchhhh
Q psy17297 318 GELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPKGFKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWY 397 (456)
Q Consensus 318 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~p~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~krAflH~Y 397 (456)
|++.|+++...+..+|.+++++|++-.-.+ -.-.+..+++|+|+|+|+|++.+.++.++|+.||.||||||||
T Consensus 313 gdvvP~~v~~A~a~ikt~rt~qfvd~~v~g-------g~lakv~Ravcmlsnttai~eawarld~kfdLmyakrafVhwy 385 (407)
T KOG1376|consen 313 GDVVPKDVNAAIATIKTKRTIQFVDTVVPG-------GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 385 (407)
T ss_pred CCcCcccchHHHHhhhhccccccceeeccC-------cchhhhceeeEecCCCcHHHHHHhhcchhhhhhhcchheeeec
Confidence 999999999999999999999998722110 0112567899999999999999999999999999999999999
Q ss_pred ccCCCChhhHHHHHHHHHHHH
Q psy17297 398 TVEGMDEFEFHEAGANVEDLI 418 (456)
Q Consensus 398 ~~~Gmee~eF~Ea~~~l~~l~ 418 (456)
.++||||+||.||+++|..|.
T Consensus 386 vgegmeegef~ea~ed~a~le 406 (407)
T KOG1376|consen 386 VGEGMEEGEFSEAREDLAALE 406 (407)
T ss_pred cCCCccccchhhhhhhHHhhc
Confidence 999999999999999998875
No 16
>KOG1375|consensus
Probab=100.00 E-value=3.6e-68 Score=514.92 Aligned_cols=347 Identities=74% Similarity=1.276 Sum_probs=330.3
Q ss_pred chhccccccccccC-CCcccceeEEeCCCCCeeccccccCCCcccCCCceeeccCCcccccCccccccchhhHHHHHHHH
Q psy17297 41 DLQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 119 (456)
Q Consensus 41 ~~~~~~~~~~F~e~-~~~~~pR~l~vD~e~~~i~~i~~~~~~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~i 119 (456)
+.+..+++++|.+. .++|+||+|++|++|++++.++.+++..+|+|++ +++| .|+|+.|.++.|.
T Consensus 5 ~~q~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds----- 70 (369)
T KOG1375|consen 5 DLQLERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS----- 70 (369)
T ss_pred cceeeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc-----
Confidence 34567889999999 7899999999999999999999999999999999 4444 8999999998877
Q ss_pred HHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCCeeeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeE
Q psy17297 120 RREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETF 199 (456)
Q Consensus 120 r~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i 199 (456)
.||++||||++||++||||||+|++++..++++||.+.+.++++.|++. ++++++|||+.|++..|.+++|.++
T Consensus 71 -----~~dclqgfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~ 144 (369)
T KOG1375|consen 71 -----SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETF 144 (369)
T ss_pred -----ccchhhcceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCccc
Confidence 8999999999999999999999999999999999999999999999965 9999999999999999999999999
Q ss_pred EecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCccccCCCCcchhHHhhhhcccccCCcccccccCccCcCCcccc
Q psy17297 200 CIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLID 279 (456)
Q Consensus 200 ~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~~~r~~~~~n~~l~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~ 279 (456)
++||++|+++|.+.+.+..++ ++|..+||||++|.|++++..|++|+|++||+.++++|+......+
T Consensus 145 cidNeal~dic~~~lkl~~~~-------------g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q 211 (369)
T KOG1375|consen 145 CIDNEALYDICFRTLKLKTPS-------------GVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQ 211 (369)
T ss_pred ccccHHHHHHHhhhhcccCCC-------------CceeecccccccchhhhhhhhccCCCcchhhccccccccccccccc
Confidence 999999999999999988877 8899999999999999999999999999999999999999999999
Q ss_pred cccCCHHHHHHhhhccCccccccCCCCCceeeeeecccccCChHHHHHHHhhhccCCCCceeeeccCceeeeeecCCCCC
Q psy17297 280 YKAMSIGELTQELFDAKNMMVACDPRHGKYLTVATIFRGELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPKG 359 (456)
Q Consensus 280 ~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~p~~ 359 (456)
+..++++++++|+|+.++++..++ |++++.++|| ..+++++.+..++.+.+.+|++|+|+++++.+|.+||..
T Consensus 212 ~~a~tv~eltqq~fdaknmm~a~d-----yLt~a~~~rG--smkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~g 284 (369)
T KOG1375|consen 212 YRALTVPELTQQMFDAKNMMTACD-----YLTVAAMFRG--SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGG 284 (369)
T ss_pred cccccccccccccccCcchhhhhh-----hhhhHHHhcc--chhhhHHHhhhccccCcchhhhhcccccceeeccCCCcc
Confidence 999999999999999999999887 9999999999 778999999999999999999999999999999999999
Q ss_pred CceeEEEeecCcccHHHHHHHHHHHhhccccccchhhhccCCCChhhHHHHHHHHHHHHHHHHHHhhc
Q psy17297 360 FKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEA 427 (456)
Q Consensus 360 ~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~krAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~ 427 (456)
...+.+.++|+++|.+.|+++.++|..||+||||||||.++||+|+||+||..++++++.+|+.+..+
T Consensus 285 lkms~tf~~n~taiqelf~~i~eqftamfrrkAflhwy~~egMde~EFtEAes~~ndLi~eyqQy~~~ 352 (369)
T KOG1375|consen 285 LKMSSTFIGNNTAIQELFRCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQQD 352 (369)
T ss_pred ccccccccccchhHHHHHHHhhhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999433
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=3.4e-65 Score=513.59 Aligned_cols=327 Identities=45% Similarity=0.832 Sum_probs=305.2
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcchhccccccccccCCCcccceeEEeCCCCCeeccccccCCCc
Q psy17297 3 EIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGK 82 (456)
Q Consensus 3 EiItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~pR~l~vD~e~~~i~~i~~~~~~~ 82 (456)
|||+||+||||||||++||+.. |+||+|+++++.++.++.+.
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~--------------------------------------v~idtd~~~l~~~~~~~~~~ 42 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL--------------------------------------VLVDTEPGVIDETLSGPYRL 42 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh--------------------------------------heecCCHHHHHHHhCccccc
Confidence 8999999999999999999853 99999999999998887777
Q ss_pred ccCCCceeeccCCcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCCee
Q psy17297 83 MFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRM 162 (456)
Q Consensus 83 ~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~~~ 162 (456)
+|++.+.+.+++|+||||++||+..|++..|+++|+||+++|+||++|||+++||++||||||+|++++|.|||+||+++
T Consensus 43 ~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~~ 122 (328)
T cd00286 43 LFCIGQLITHGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRL 122 (328)
T ss_pred ccCccceeecCCCCCCCcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCccccCC
Q psy17297 163 INAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFP 242 (456)
Q Consensus 163 i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~~~r~~ 242 (456)
+++++|+|+...+ +++++||++|++++|.+++|+++++||++|.++|.+.+++..++|.++|++||++|+++|.++|+|
T Consensus 123 ~~~~~v~P~~~~~-~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~ 201 (328)
T cd00286 123 KITFSILPGPDEG-VIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLRFD 201 (328)
T ss_pred eeEEEecCCCCCc-chhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhccccccccccC
Confidence 9999999985433 689999999999999999999999999999999998888888999999999999999999999999
Q ss_pred CCcchhHHhhhhcccccCCcccccccCccCcCCcccccccCCHHHHHHhhhccCccccccCCCCCceeeeeecccccCCh
Q psy17297 243 GQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVACDPRHGKYLTVATIFRGELSV 322 (456)
Q Consensus 243 ~~~n~~l~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~ 322 (456)
|.+|.|++++.++|+|+|++||++++++|+.......+...++.+++++++++++++..+++..++++++.+++||+...
T Consensus 202 g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rG~~~~ 281 (328)
T cd00286 202 GSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRGPVSP 281 (328)
T ss_pred ccccchHHHHhhhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCeeeccCCCccchHHHHHHHhCCCCh
Confidence 99999999999999999999999999999987665566778999999999999999988888899999999999999988
Q ss_pred HHHHHHHhhhccCCCCceeeeccCceeeeeecCCCC-CCceeEEEeecC
Q psy17297 323 KEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPK-GFKMSGTFIGNT 370 (456)
Q Consensus 323 ~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~p~-~~~~s~~~l~Ns 370 (456)
.++.+.+..++.+..+. +|+|+++++++|..+|. +...++++++|+
T Consensus 282 ~~v~~~~~~l~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~~~~l~Ns 328 (328)
T cd00286 282 SEVREGIARVAPRTSHL--SWSPPGIKVGVSPTPPASEHKVSALLLSNS 328 (328)
T ss_pred HHHHHHHHHHHHhCCcC--CcCCCCEeEeecCCCCCCCcCeEEEEeccC
Confidence 99988888887665544 89999999999999887 778999999986
No 18
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=8.5e-52 Score=429.51 Aligned_cols=406 Identities=18% Similarity=0.214 Sum_probs=294.7
Q ss_pred EeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcchhccccccccccC-----CCcccceeEEeCCCCCeecccc
Q psy17297 2 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-----QGGYIPRAILVDLEPGTMDAVR 76 (456)
Q Consensus 2 ~EiItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~-----~~~~~pR~l~vD~e~~~i~~i~ 76 (456)
|||||||+||++|+||+||||.|...+.+.+++. ....+++++||++ ..+|+||+|++|+++++...-+
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~------~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl~~ 74 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDSP------ASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHLPE 74 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcCCCCCCc------cccCCCceeeeccccCCCceeEcCcEEEEecCCccccccc
Confidence 7999999999999999999999966665444331 2346789999997 4699999999999999865433
Q ss_pred ccCC----------------CcccCCCceeecc-----CCcccccCccccc---cchhhHHHHHHHHHHHHhhcCCCCce
Q psy17297 77 SGPY----------------GKMFRPDNFLHGQ-----SGAANNWAKGHYT---EGVELVDAVMDLTRREAENCDCMQGF 132 (456)
Q Consensus 77 ~~~~----------------~~~~~~~~~~~~~-----~~~gnnwa~G~~~---~g~~~~e~~~d~ir~~~E~cD~lqGf 132 (456)
.+.. +-.|||++++.-. .+.+++|+.|+-. .+.+..|+++|+||+++|+||++|||
T Consensus 75 ~~~l~~~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGF 154 (493)
T cd06060 75 EGSLKVYNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGF 154 (493)
T ss_pred ccCcCCcccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccccE
Confidence 2221 2348999887642 3556677776532 35678899999999999999999999
Q ss_pred eEEecCCCCccccchHHHHHHHHhhCCCeeeEEEEEecCCCC----CCccchhhHHHHHHHHHhhcCceeEEecchhh-H
Q psy17297 133 QVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKV----SDTVVEPYNAILSLSHLIETSDETFCIDNEAL-Y 207 (456)
Q Consensus 133 ~i~~sl~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~----~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l-~ 207 (456)
|+++|++||| ||+|+.++|.|+||||++.+++++++|.+.. .+.++++||++|++++|.++||+++|+.-... +
T Consensus 155 qi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~~w 233 (493)
T cd06060 155 QVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLW 233 (493)
T ss_pred EEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccccc
Confidence 9999999999 7999999999999999999999999997432 25789999999999999999999999964432 1
Q ss_pred hhh-----hhccCCCCCCcccccHHHHHhhccCCccccCCCCcchhHHhhhhcccccCCcccccccCc-cCcCCcccccc
Q psy17297 208 DIC-----VRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNA-PLVSPSLIDYK 281 (456)
Q Consensus 208 ~~~-----~~~~~~~~~~~~~~N~via~~i~~~t~~~r~~~~~n~~l~~l~~~L~P~p~~~fl~~s~~-P~~~~~~~~~~ 281 (456)
... ...+.++..+..+..+++|.+|+++|.|+|..+.. .+|.+|+.+|.+..+ |++..+.+ |+-.. .
T Consensus 234 ~~~~~p~~~~~l~~d~~~~~htSAllA~aldT~TLp~Rl~~~~-~~m~~l~~~l~~~gR-ki~~~~~a~P~p~~-----~ 306 (493)
T cd06060 234 RKPGPPRTFPYLNYDAELPYHTSALLATALDTLTLPYRLKSSP-SSLSGLCDDLSFSGR-KVVAAGLALPFPMV-----G 306 (493)
T ss_pred cCCCCCCCCcccccCCCCchHHHHHHHHHHhhccccceeccCC-ccHHHHHHHhhhccc-hhhhhccCCCCCCC-----C
Confidence 111 11223444567777899999999999999998765 568999999987554 66665544 76442 2
Q ss_pred cCCHHHHHHhhhcc--CccccccCCCCCceeeeeecccccCCh----------------------HHHHHHHhhhccCCC
Q psy17297 282 AMSIGELTQELFDA--KNMMVACDPRHGKYLTVATIFRGELSV----------------------KEIDDHIVNIHNNNL 337 (456)
Q Consensus 282 ~~t~~~l~~~~~~~--~~~~~~~~~~~~~~ls~~~~~RG~~~~----------------------~~~~~~~~~~~~~~~ 337 (456)
..++.+++.++-.. ..++.+-.+...+++++++++||.... .++.+.+.+...+.+
T Consensus 307 ~~~l~d~L~~~~~~~~~~~l~p~~~~~~~~~~qsv~~rG~~~~~~~~~~~~~~~~~~~~~~c~s~~~~l~~y~~~~~~~s 386 (493)
T cd06060 307 GQDLIDFLDQSDGAVPWLQLTPGCQIGTRCVIQSVVLRGIPEERLKRRLLAGDQARSPAYACSSVEEMLQLYLQCQYPGS 386 (493)
T ss_pred CCcHHHHHHhcCCCCCccccCCCCccCceeeeeeehhcCCChhhccccccccccccccchhcCCHHHHHHHHHHhccCCc
Confidence 34677777765321 123322113356899999999996521 112222222222222
Q ss_pred CceeeeccCceeee------ee-cCCCC-----------C---Cc--eeEEEeecCcccHHHHHHHHHHHhhccccccch
Q psy17297 338 PYYVEWIPNNIKTA------LC-DIAPK-----------G---FK--MSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFL 394 (456)
Q Consensus 338 ~~f~~w~p~~~~~~------~~-~~~p~-----------~---~~--~s~~~l~Nst~i~~~l~~l~~~~~~m~~krAfl 394 (456)
.....-.+.|+++. .. ++... . .. ..++.|+|++++...|+.++.++.++--+| +
T Consensus 387 ~~~~~~~~~p~~~~~PfP~if~~~v~~~G~~~~~~~~~~~~~~V~s~p~~a~l~ss~~l~~~l~~l~~~~~kl~~~r--~ 464 (493)
T cd06060 387 MSALSVLPLPLKIRVPFPYIFNPNISADGFVLDNSSRGSAGADVESIPVLAALQSSPSLGEMLESLHRQLSKLDLRR--K 464 (493)
T ss_pred chhheecCCCCCCCCCCchhhccccCCCccccCCCcccccccceeechhhhhhcCchHHHHHHHHHHHHHHhhhhHh--h
Confidence 11111112222211 00 00000 0 11 245778999999999999999999999999 9
Q ss_pred hhhccCCCChhhHHHHHHHHHHHHHHHHH
Q psy17297 395 HWYTVEGMDEFEFHEAGANVEDLICEYQQ 423 (456)
Q Consensus 395 H~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~ 423 (456)
|.|...|+|+|||.|+.+.|.+++++|++
T Consensus 465 ~~~~~~g~e~de~~e~le~L~~~~~~Y~~ 493 (493)
T cd06060 465 ASFFESGLEEDEYKELLEQLLDLAECYED 493 (493)
T ss_pred hcccccccCHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999963
No 19
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=1e-50 Score=385.05 Aligned_cols=214 Identities=46% Similarity=0.894 Sum_probs=199.7
Q ss_pred eEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcchhccccccccccC-CCcccceeEEeCCCCCeeccccccCCC
Q psy17297 3 EIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-QGGYIPRAILVDLEPGTMDAVRSGPYG 81 (456)
Q Consensus 3 EiItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~-~~~~~pR~l~vD~e~~~i~~i~~~~~~ 81 (456)
|||+||+||||||||.+||++++.||+++++. .......+.++||++. .++|+||+|+||+|+++++.++.++.+
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~----~~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~ 76 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDS----KSQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKR 76 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTS----SSSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEET
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhcccccc----ccccccccccceeeeccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999998762 1223456678999998 889999999999999999999888777
Q ss_pred cccCCCceeeccCCcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCCe
Q psy17297 82 KMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDR 161 (456)
Q Consensus 82 ~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~~ 161 (456)
.+|.+++++.+++|+||||++||+..|+++.++++|+||+++|+||.+|||+++||+|||||||+++.|++.||++||++
T Consensus 77 ~l~~~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~ 156 (216)
T PF00091_consen 77 SLFDPNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKK 156 (216)
T ss_dssp TESCGGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTS
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhcccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcc
Q psy17297 162 MINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYR 222 (456)
Q Consensus 162 ~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~ 222 (456)
++++++|+|+ .. +.++++||++++|++|.+++|+++++||++|.++|.+.++++.|+|.
T Consensus 157 ~~~~~~ilP~-~~-e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~ 215 (216)
T PF00091_consen 157 PIISFSILPF-SS-EGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFN 215 (216)
T ss_dssp EEEEEEEE-C-GG-GSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHH
T ss_pred ceeecccccc-cc-ccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcC
Confidence 9999999998 44 89999999999999999999999999999999999999999888775
No 20
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=100.00 E-value=4.9e-37 Score=286.07 Aligned_cols=184 Identities=40% Similarity=0.703 Sum_probs=170.8
Q ss_pred ccccCCCcccceeEEeCCCCCeeccccccCCCcccCCCceeeccCCcccccCccccc-----cchhhHHHHHHHHHHHHh
Q psy17297 50 YYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYT-----EGVELVDAVMDLTRREAE 124 (456)
Q Consensus 50 ~F~e~~~~~~pR~l~vD~e~~~i~~i~~~~~~~~~~~~~~~~~~~~~gnnwa~G~~~-----~g~~~~e~~~d~ir~~~E 124 (456)
+|.+ +++.||+|++|+++++++.+..++.+..|++++.+.++.++||||++||+. .|+++.++++|+||+++|
T Consensus 4 ~~g~--g~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~~le 81 (192)
T smart00864 4 VFGV--GGYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIREELE 81 (192)
T ss_pred EEEe--CCchhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHHHhc
Confidence 4554 578999999999999999888777777899988889999999999999998 899999999999999999
Q ss_pred hcCCCCceeEEecCCCCccccchHHHHHHHHhhCCCeeeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEecch
Q psy17297 125 NCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNE 204 (456)
Q Consensus 125 ~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~ 204 (456)
+| ++|+++||++||||||+|+.+++.++ +||+.. ++++++|+ ..|..+++||++++|++|.+++|.++++||+
T Consensus 82 ~~---d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~--~~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~ 154 (192)
T smart00864 82 GA---DGVFITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF--VFEGVVRPYNAELGLEELREHVDSLIVIDND 154 (192)
T ss_pred CC---CEEEEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE--eecchhHHHHHHHHHHHHHHhCCEEEEEEhH
Confidence 99 99999999999999999999999999 999877 99999994 5788999999999999999999999999999
Q ss_pred hhHhhhhhccCCCCCCcccccHHHHHhhccCCccccCCC
Q psy17297 205 ALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPG 243 (456)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~~~r~~~ 243 (456)
+|.++|.+.+.+ .++|.++|.+||++|+++|.++||||
T Consensus 155 ~l~~~~~~~~~~-~~~~~~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 155 ALLDICGRNLPI-RPAFKDANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred HHHHHHhccCCc-hHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999877765 77999999999999999999999986
No 21
>KOG2530|consensus
Probab=100.00 E-value=3.8e-34 Score=283.27 Aligned_cols=238 Identities=26% Similarity=0.351 Sum_probs=175.0
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcchhcccc-ccccccC-----CCcccceeEEeCCCCCeecc
Q psy17297 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERI-QVYYNEA-----QGGYIPRAILVDLEPGTMDA 74 (456)
Q Consensus 1 M~EiItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~-~~~F~e~-----~~~~~pR~l~vD~e~~~i~~ 74 (456)
||||+|||+|+++|++|+||||+|..-.++.++...+. ..... +|+||.+ ..+|+||+|++|+++.+...
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~~~----~~~~~ndvlyr~g~~~~~~~tytPRl~l~Dl~g~~g~~ 76 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEEPP----GELCPNDVLYRTGRTDHGQITYTPRLLLVDLKGELGTL 76 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcccCCh----hhcCcchhhhhccccccCceeeccceeEEecCcccccc
Confidence 99999999999999999999999977777765543321 11222 8999998 46999999999999987422
Q ss_pred ccccC------------C-------------------------------------------------------CcccCCC
Q psy17297 75 VRSGP------------Y-------------------------------------------------------GKMFRPD 87 (456)
Q Consensus 75 i~~~~------------~-------------------------------------------------------~~~~~~~ 87 (456)
.-.+. + +..|||+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yHp~ 156 (483)
T KOG2530|consen 77 KYQGELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYHPR 156 (483)
T ss_pred ccchhhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcCcc
Confidence 10000 0 1124444
Q ss_pred ceeecc-----CCcccccCccccccch-hhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCCe
Q psy17297 88 NFLHGQ-----SGAANNWAKGHYTEGV-ELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDR 161 (456)
Q Consensus 88 ~~~~~~-----~~~gnnwa~G~~~~g~-~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~~ 161 (456)
.+.--+ .++-++|..|+-..-+ .+.+++.|+||++||+||.+|||+++.++.+||| |+++.++|.|+|||+++
T Consensus 157 tl~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys~~ 235 (483)
T KOG2530|consen 157 TLNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYSKK 235 (483)
T ss_pred ccccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhcCC
Confidence 433221 1223444444432222 3578999999999999999999999999999997 99999999999999999
Q ss_pred eeEEEEEecCCC-CCCccc------hhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhcc
Q psy17297 162 MINAFSVVPSPK-VSDTVV------EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCG 234 (456)
Q Consensus 162 ~i~~~~v~P~~~-~~~~~~------~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~ 234 (456)
.+++++..|.+. .++... ...|.+|++.+|.+.|++++|+.--. .++ ...+..+++|.+|++
T Consensus 236 ~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~-------~~~----~~~~tsA~~a~~~ds 304 (483)
T KOG2530|consen 236 AVFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTAS-------GLG----DLWETSAKLARAFDS 304 (483)
T ss_pred ceeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeecccccc-------ccc----cHHHHHHHHHhhccc
Confidence 999999998532 222211 25689999999999999999984221 111 345677999999999
Q ss_pred CCccccCCCCcchhHHhhhh
Q psy17297 235 ITTCLRFPGQLNADLRKLAV 254 (456)
Q Consensus 235 ~t~~~r~~~~~n~~l~~l~~ 254 (456)
+|.|+|..++.|..+.+.++
T Consensus 305 ~tlptr~~ssS~~~~~d~ls 324 (483)
T KOG2530|consen 305 ITLPTRLISSSNLRQRDTLS 324 (483)
T ss_pred ccccceecchhHHHHHHHHH
Confidence 99999999886665555554
No 22
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.97 E-value=1.8e-31 Score=269.20 Aligned_cols=226 Identities=22% Similarity=0.276 Sum_probs=188.6
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcchhccccccccccCCCcccceeEEeCCCCCeeccccccCC
Q psy17297 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPY 80 (456)
Q Consensus 1 M~EiItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~pR~l~vD~e~~~i~~i~~~~~ 80 (456)
|+ |..|.+|+||+.|-+++++.- .. + ..+|+||+|+||+++..++.++.
T Consensus 1 m~-i~viGvGg~G~niv~~l~~~~-----~~--~--------------------~~~~~~~~iavntD~~~L~~l~~--- 49 (349)
T cd02202 1 MR-VLIIGVGQAGGRIVDALNRHD-----KR--S--------------------GFGYCVGALAINTAKNDLKGLKH--- 49 (349)
T ss_pred CE-EEEEEeCCcHHHHHHHHHHhC-----CC--c--------------------CCccceeEEEEECCHHHHHhhhc---
Confidence 66 889999999999999987631 00 0 12578999999999998877654
Q ss_pred CcccCCCceeeccCCcccccCccccccchhhHHHHHHHHHHHHhhcCC--CCceeEEecCCCCccccchHHHHHHHHhhC
Q psy17297 81 GKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDC--MQGFQVTHSLGGGTGSGMGTLLLTKIREEY 158 (456)
Q Consensus 81 ~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~--lqGf~i~~sl~GGtGSG~gs~lle~l~dey 158 (456)
...++.++.+++.+.+..+.|.+..|+++.++..|.||+++|.||. +|+|++++|++||||||+++.+++.++++|
T Consensus 50 --~~~~~ki~~g~~~t~G~GaG~~~~~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~lke~~ 127 (349)
T cd02202 50 --IPAEDRILIGQSEVKGHGVGADRELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELKERY 127 (349)
T ss_pred --CCCCCEEEecCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHHHHHHhC
Confidence 2357777777653322233333355789999999999999999997 999999999999999999999999999999
Q ss_pred CCeeeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCcc
Q psy17297 159 PDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTC 238 (456)
Q Consensus 159 p~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~~ 238 (456)
| +++++++++|+. .+..+++||++++|++|.+++|.+++|||++|+++|.. + .+.|.++|++||+.|+.++.+
T Consensus 128 ~-~~~~~iv~~P~~--~eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~---~-~~~f~~~N~~Ia~~i~~l~~~ 200 (349)
T cd02202 128 E-EPVYALGVLPAR--EEGERYSANAARSLDALSEEADAIILFDNDAWKRKGES---V-EEAYDRINEEIARRIGLLLRA 200 (349)
T ss_pred C-ccEEEEEEecCC--CCCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccc---h-HHHHHHHHHHHHHHHHHHHHh
Confidence 9 899999999984 34589999999999999999999999999999998642 2 379999999999999999999
Q ss_pred ccC-----CCCcchhHHhhhhcccccCCcccccccC
Q psy17297 239 LRF-----PGQLNADLRKLAVNMVPFPRLHFFMSGN 269 (456)
Q Consensus 239 ~r~-----~~~~n~~l~~l~~~L~P~p~~~fl~~s~ 269 (456)
.|+ ||.+|.|++++.++|.+. .+.+..+
T Consensus 201 ~r~~~~~~~g~invD~~dv~~~L~~~---G~~~iG~ 233 (349)
T cd02202 201 GEANAGDSVGESVLDASEVINTLSGG---GFATIGY 233 (349)
T ss_pred hhcccCCCCCeEeccHHHHHHHhccC---CeEEEEE
Confidence 999 999999999999999764 4444444
No 23
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.94 E-value=1.2e-26 Score=229.96 Aligned_cols=207 Identities=20% Similarity=0.268 Sum_probs=167.5
Q ss_pred CEeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcchhccccccccccCCCcccceeEEeCCCCCeeccccccCC
Q psy17297 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPY 80 (456)
Q Consensus 1 M~EiItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~pR~l~vD~e~~~i~~i~~~~~ 80 (456)
|+ |..|.+|+||+.+-+++++. ++ .-.+.+++|++....+.+.. +.
T Consensus 1 ~~-i~viGvGg~G~n~v~~~~~~-----~~---------------------------~~~~~iainTd~~~L~~~~a-~~ 46 (303)
T cd02191 1 AK-IAVIGFGGAGGNIVDKFLEY-----DK---------------------------EGRSAVAVNTDAQDLLGLEA-EN 46 (303)
T ss_pred CE-EEEEEECchHHHHHHHHHHc-----CC---------------------------CCccEEEEECcHHHHhcCCC-Cc
Confidence 44 78899999999999988752 10 01456899988876655432 11
Q ss_pred CcccCCCceeeccCCcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCC
Q psy17297 81 GKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPD 160 (456)
Q Consensus 81 ~~~~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~ 160 (456)
+-++.++ .+...|+|+||+. |++..++++|+||+.+|.||. |++++++|||||||+++.+++.+++.|+
T Consensus 47 ki~iG~~--~t~g~GaG~~~~~-----G~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~~- 115 (303)
T cd02191 47 RVLIGQA--RTKGLGAGANPEL-----GAEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIGT- 115 (303)
T ss_pred EEecCCc--cccCCCCCCCHHH-----HHHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhCC-
Confidence 1111111 1345689999875 468899999999999999994 8999999999999999999999999996
Q ss_pred eeeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCcccc
Q psy17297 161 RMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLR 240 (456)
Q Consensus 161 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~~~r 240 (456)
..++++++| ...|..+++||+.++|++|.+++|.++++||++|.++|.+ +.+. ..|..+|.+||+.+.++|..+|
T Consensus 116 -~~~~vvt~P--f~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~~-~af~~~N~~ia~~i~~it~~i~ 190 (303)
T cd02191 116 -LTVAVVTLP--FSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK-ASLE-GAFDHADEVLVRAVGGLFGAIE 190 (303)
T ss_pred -CEEEEEeCC--cccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc-CChH-HHHHHHHHHHHHHHHHHHHhhc
Confidence 444444445 4567789999999999999999999999999999999976 7764 4999999999999999999999
Q ss_pred CCCCcchhHHhhhhccc
Q psy17297 241 FPGQLNADLRKLAVNMV 257 (456)
Q Consensus 241 ~~~~~n~~l~~l~~~L~ 257 (456)
+||.+|.|++++.+.|-
T Consensus 191 ~~g~invD~~dv~~~l~ 207 (303)
T cd02191 191 IEGEINVDFADVKNVMD 207 (303)
T ss_pred cCCcccCCHHHHHHHhc
Confidence 99999999999987663
No 24
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.92 E-value=2.2e-25 Score=224.33 Aligned_cols=205 Identities=23% Similarity=0.320 Sum_probs=162.5
Q ss_pred EEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcchhccccccccccCCCcccceeEEeCCCCCeeccccccCCCcc
Q psy17297 4 IVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKM 83 (456)
Q Consensus 4 iItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~pR~l~vD~e~~~i~~i~~~~~~~~ 83 (456)
|..|.+|+||+.+-+.+++. ++ .....+.+|++...++.+.. +.+-+
T Consensus 20 i~viGvGg~G~n~v~~l~~~-----~~---------------------------~~~~~iainTD~~~L~~~~a-~~ki~ 66 (349)
T TIGR00065 20 IKVIGVGGGGNNTVNRMLEE-----GV---------------------------EGVEFIAINTDAQHLKTTKA-DKKIL 66 (349)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CC---------------------------CceEEEEEECCHHHHhcCCC-CeEEE
Confidence 77899999999999888653 10 01455888887765544332 11111
Q ss_pred cCCCceeeccCCcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCCeee
Q psy17297 84 FRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMI 163 (456)
Q Consensus 84 ~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~~~i 163 (456)
+.++ .+...|+|++|+. |+++.++.+|+||+.+|.||.+ ++++|+|||||||+++.+++.++ +|+ ..+
T Consensus 67 iG~~--~t~G~GaG~~~~~-----G~~~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia~~ak-e~~-~l~ 134 (349)
T TIGR00065 67 IGKK--LTRGLGAGGNPEI-----GRKAAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVAKIAK-ELG-ALT 134 (349)
T ss_pred cCCC--CCCCCCCCCCHHH-----HHHHHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHHHHHH-HcC-CCE
Confidence 1111 1234578888875 6899999999999999999996 99999999999999886666655 565 455
Q ss_pred EEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCccccCCC
Q psy17297 164 NAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPG 243 (456)
Q Consensus 164 ~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~~~r~~~ 243 (456)
+++.++|+ ..|..+++||+.++|.+|.+++|+++++||++|.++|.+ +.+.. .|..+|.+||+++.++|.++|+||
T Consensus 135 vaivt~Pf--~~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i~~-af~~~N~iia~~i~~it~~ir~~g 210 (349)
T TIGR00065 135 VAVVTKPF--KFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPLND-AFKVADDVLVRAVKGISELITKPG 210 (349)
T ss_pred EEEEeCCc--cccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCHHH-HHHHHHHHHHHHHHhHHHhhccCC
Confidence 55556665 567789999999999999999999999999999999977 77644 999999999999999999999999
Q ss_pred CcchhHHhhhhccc
Q psy17297 244 QLNADLRKLAVNMV 257 (456)
Q Consensus 244 ~~n~~l~~l~~~L~ 257 (456)
.+|.|+.++.+-|-
T Consensus 211 ~iNvDf~dv~~vl~ 224 (349)
T TIGR00065 211 LINIDFADVRAVMS 224 (349)
T ss_pred cCcCCHHHHHHHHh
Confidence 99999999987653
No 25
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.92 E-value=1e-24 Score=216.97 Aligned_cols=207 Identities=20% Similarity=0.293 Sum_probs=166.0
Q ss_pred EEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcchhccccccccccCCCcccceeEEeCCCCCeeccccccCCCcc
Q psy17297 4 IVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKM 83 (456)
Q Consensus 4 iItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~pR~l~vD~e~~~i~~i~~~~~~~~ 83 (456)
|..|.+|+||+.+-+.+++. ++. -...+.+|++...++.+.. +.+-+
T Consensus 3 i~viGvGg~G~n~v~~l~~~-----~~~---------------------------~~~~~a~ntD~~~L~~~~~-~~k~~ 49 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIES-----GLE---------------------------GVEFIAANTDAQALAKSKA-PNKIQ 49 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CCC---------------------------CceEEEEECCHHHHhcCCC-CcEEE
Confidence 67899999999999888752 100 1345888888776555432 11222
Q ss_pred cCCCceeeccCCcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCCeee
Q psy17297 84 FRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMI 163 (456)
Q Consensus 84 ~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~~~i 163 (456)
+.++ .+...|+|++|+.| ++..++.+|+||+.+|.||.+ +|++|+|||||||+++.+++..+ +|+. .+
T Consensus 50 ig~~--~t~g~Gag~~~~~g-----~~~a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~~a~-e~g~-~~ 117 (304)
T cd02201 50 LGKE--LTRGLGAGGDPEVG-----RKAAEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAKIAK-EMGA-LT 117 (304)
T ss_pred cCCC--CCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHHHHH-HcCC-CE
Confidence 2221 23456889998865 577889999999999999985 99999999999999999776655 5653 56
Q ss_pred EEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCccccCCC
Q psy17297 164 NAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPG 243 (456)
Q Consensus 164 ~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~~~r~~~ 243 (456)
+++.++|+ ..|..+++||+.++++.|.+++|.++++||++|.++|.+.+.+.. .|..+|.+|++++.++|.++|+||
T Consensus 118 ~~vvt~Pf--~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~-af~~~n~~ia~~i~~it~~~~~~g 194 (304)
T cd02201 118 VAVVTKPF--SFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLE-AFKLADDVLAQAVKGISDLITKPG 194 (304)
T ss_pred EEEEeCCc--cccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHHhccCc
Confidence 66666665 456779999999999999999999999999999999977777765 899999999999999999999999
Q ss_pred CcchhHHhhhhcccc
Q psy17297 244 QLNADLRKLAVNMVP 258 (456)
Q Consensus 244 ~~n~~l~~l~~~L~P 258 (456)
.+|.|++++.+.|-.
T Consensus 195 ~invD~~dv~~vl~~ 209 (304)
T cd02201 195 LINLDFADVKTVMKN 209 (304)
T ss_pred cccCCHHHHHHHhcc
Confidence 999999999887753
No 26
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.90 E-value=5.5e-24 Score=184.91 Aligned_cols=123 Identities=46% Similarity=0.877 Sum_probs=112.2
Q ss_pred CCcccccccCccCcCCcccccccCCHHHHHHhhhccCccccccCCCCCceeeeeecccccCChHHHHHHHhhhccCCCCc
Q psy17297 260 PRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVACDPRHGKYLTVATIFRGELSVKEIDDHIVNIHNNNLPY 339 (456)
Q Consensus 260 p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~~~~~~~~~~~~~~~~~~ 339 (456)
|++||++++++|+.......++..++.+|++++|+++++|+++++.+|+|||+++++||++.++|+.+.+.+++.+..++
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~ 80 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQ 80 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTS
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhccccc
Confidence 89999999999999988888899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCceeeeeecCCCCCCcee---EEEeecCcccHHHHHHHHH
Q psy17297 340 YVEWIPNNIKTALCDIAPKGFKMS---GTFIGNTTAIQGLFQRIMD 382 (456)
Q Consensus 340 f~~w~p~~~~~~~~~~~p~~~~~s---~~~l~Nst~i~~~l~~l~~ 382 (456)
|++|+|+++++++|+++|.....+ +++|+|+|+|.+.|+++.+
T Consensus 81 Fv~W~p~~~kv~~~~~~p~~~~~s~~s~~~LsNsTaI~~~f~~i~~ 126 (126)
T PF03953_consen 81 FVDWIPTGFKVGICKVPPYGQPNSDRSGLMLSNSTAIAEVFSRISH 126 (126)
T ss_dssp B-SSSTTCEEEEEESS-STSTTTSSEEEEEEEEEGGGHHHHHHHHH
T ss_pred eeeecCchhhcccccCCCcccCCCcceEEEeCChHHHHHHHHHhcC
Confidence 999999999999999999866655 9999999999999999874
No 27
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.90 E-value=3.6e-23 Score=209.12 Aligned_cols=205 Identities=21% Similarity=0.328 Sum_probs=163.9
Q ss_pred EEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcchhccccccccccCCCcccceeEEeCCCCCeeccccccCCCcc
Q psy17297 4 IVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKM 83 (456)
Q Consensus 4 iItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~pR~l~vD~e~~~i~~i~~~~~~~~ 83 (456)
|..|.+|+||+.+-+++++. ++. -...|.++++...+..+... .+-+
T Consensus 31 I~ViGvGGaG~N~v~~m~~~-----~~~---------------------------~v~~iaiNTD~q~L~~~~a~-~ki~ 77 (378)
T PRK13018 31 IVVVGCGGAGNNTINRLYEI-----GIE---------------------------GAETIAINTDAQHLAMIKAD-KKIL 77 (378)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CCC---------------------------CceEEEEECCHHHHhcCCCC-cEEe
Confidence 77899999999999988752 110 03458888887655443221 1111
Q ss_pred cCCCceeeccCCcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCCeee
Q psy17297 84 FRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMI 163 (456)
Q Consensus 84 ~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~~~i 163 (456)
+.++ ++...|+|++|..| ++..++.+|.||+.+|.||. |+|++++|||||||+++.+++.+++ ++ ..+
T Consensus 78 iG~~--~t~G~GaG~dp~~G-----~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake-~g-~lt 145 (378)
T PRK13018 78 IGKS--LTRGLGAGGDPEVG-----RKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKE-QG-ALV 145 (378)
T ss_pred cCCc--cCCCCCCCCChHHH-----HHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHH-cC-CCe
Confidence 1111 23345788886654 56788889999999999998 8999999999999999999999997 54 456
Q ss_pred EEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCccccCCC
Q psy17297 164 NAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPG 243 (456)
Q Consensus 164 ~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~~~r~~~ 243 (456)
+++++.|+. .+...+..|+.++|.+|.+++|.++++||++|.++| +.+.+.. .|..+|.+|++.+.++|.++|+||
T Consensus 146 v~vVt~Pf~--~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~~-af~~~N~iIa~~I~~It~~i~~~G 221 (378)
T PRK13018 146 VGVVTKPFK--FEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIAD-AFSVADEVIAETVKGITETITKPS 221 (378)
T ss_pred EEEEEcCcc--cccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHHH-HHHHHHHHHHHHHHhhhhhcccCC
Confidence 788899983 456788999999999999999999999999999999 7676654 899999999999999999999999
Q ss_pred CcchhHHhhhhccc
Q psy17297 244 QLNADLRKLAVNMV 257 (456)
Q Consensus 244 ~~n~~l~~l~~~L~ 257 (456)
.+|.|++++.+-|-
T Consensus 222 ~iN~Df~dv~~vl~ 235 (378)
T PRK13018 222 LINLDFADVKSVMK 235 (378)
T ss_pred ceecCHHHHHHHhc
Confidence 99999999987664
No 28
>PF14881 Tubulin_3: Tubulin domain
Probab=99.89 E-value=6e-23 Score=188.19 Aligned_cols=149 Identities=24% Similarity=0.333 Sum_probs=110.8
Q ss_pred CcccCCCceeeccCC-------cccccCccccccch-hhHHHHHHH-HHHHHhhcCCCCceeEEecCCCCccccchHHHH
Q psy17297 81 GKMFRPDNFLHGQSG-------AANNWAKGHYTEGV-ELVDAVMDL-TRREAENCDCMQGFQVTHSLGGGTGSGMGTLLL 151 (456)
Q Consensus 81 ~~~~~~~~~~~~~~~-------~gnnwa~G~~~~g~-~~~e~~~d~-ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~ll 151 (456)
+-+|||+++..-++. ...+|..|.-.... +..+++.|+ ||+++|+||++||||++.++.+||| |+++.++
T Consensus 17 r~~yhPrSl~~l~~~~~~~~~~~Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gfas~~L 95 (180)
T PF14881_consen 17 RVHYHPRSLNQLNDYEHNSPNMPFDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GFASSLL 95 (180)
T ss_pred cceeCCCceEEcCccccCCCCCCcccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchH-hHHHHHH
Confidence 345677766554332 23445555332222 233466665 9999999999999999999999997 9999999
Q ss_pred HHHHhhCCCeee-EEEEEecCCCCCC-----ccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCccccc
Q psy17297 152 TKIREEYPDRMI-NAFSVVPSPKVSD-----TVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLN 225 (456)
Q Consensus 152 e~l~deyp~~~i-~~~~v~P~~~~~~-----~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N 225 (456)
|+|||||||+++ +.+++.+...... ...+.+|.++++..|.++|++++|+.... +..+..|..
T Consensus 96 e~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~~~-----------d~~s~~htS 164 (180)
T PF14881_consen 96 EHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKALSLSELSEQSSLFVPLSTLS-----------DASSNWHTS 164 (180)
T ss_pred HHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEecCCCC-----------cCCCcHHHH
Confidence 999999999996 6666655422111 12456899999999999999999996200 234667999
Q ss_pred HHHHHhhccCCccccC
Q psy17297 226 HLVSATMCGITTCLRF 241 (456)
Q Consensus 226 ~via~~i~~~t~~~r~ 241 (456)
+++|.+|.++|.|+|+
T Consensus 165 ai~A~aidT~TLp~RL 180 (180)
T PF14881_consen 165 AILAAAIDTITLPYRL 180 (180)
T ss_pred HHHHHHHHhccccCCC
Confidence 9999999999999995
No 29
>PRK09330 cell division protein FtsZ; Validated
Probab=99.84 E-value=6.1e-21 Score=193.12 Aligned_cols=206 Identities=22% Similarity=0.307 Sum_probs=160.9
Q ss_pred EEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcchhccccccccccCCCcccceeEEeCCCCCeeccccccCCCcc
Q psy17297 4 IVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGPYGKM 83 (456)
Q Consensus 4 iItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~pR~l~vD~e~~~i~~i~~~~~~~~ 83 (456)
|..|.+|+||+.+=+++++. ++. . ...+.++++...+..+... .+-+
T Consensus 16 IkViGvGG~G~Nav~~m~~~-----~~~----------------~-----------v~fia~NTD~q~L~~~~a~-~ki~ 62 (384)
T PRK09330 16 IKVIGVGGGGGNAVNRMIEE-----GIQ----------------G-----------VEFIAANTDAQALLKSKAP-VKIQ 62 (384)
T ss_pred EEEEEECCcHHHHHHHHHHc-----CCC----------------C-----------ceEEEEeCcHHHHhcCCCC-eEEE
Confidence 77899999999999888652 110 0 2348888876654433221 1111
Q ss_pred cCCCceeeccCCcccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCCeee
Q psy17297 84 FRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMI 163 (456)
Q Consensus 84 ~~~~~~~~~~~~~gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~~~i 163 (456)
+.++ ++...|+|++|. .|++..++..|.||+.+|.||.+ +|++++|||||||.++. +..+..+|+ +
T Consensus 63 lG~~--~t~GlGaG~~pe-----~G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaapv-IA~iake~g---~ 128 (384)
T PRK09330 63 LGEK--LTRGLGAGANPE-----VGRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAPV-VAEIAKELG---I 128 (384)
T ss_pred cCCc--ccccCCCCCCHH-----HHHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHHH-HHHHHHHcC---C
Confidence 1111 233457888877 56889999999999999999988 99999999999999994 556666776 4
Q ss_pred EEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCccccCCC
Q psy17297 164 NAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPG 243 (456)
Q Consensus 164 ~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~~~r~~~ 243 (456)
++++|+|.|...|..+++||+.++|..|.+++|.+|+++|++|.+++.+.+.+.. .|..+|.+|++.+.+++..+++||
T Consensus 129 ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~~-Af~~ad~vL~~~v~~It~~i~~pG 207 (384)
T PRK09330 129 LTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLLD-AFKAADDVLRQAVQGITDLITKPG 207 (384)
T ss_pred cEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCHHH-HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4555555445678889999999999999999999999999999999877666655 899999999999999999999999
Q ss_pred CcchhHHhhhhccc
Q psy17297 244 QLNADLRKLAVNMV 257 (456)
Q Consensus 244 ~~n~~l~~l~~~L~ 257 (456)
.+|.|+.++.+-|-
T Consensus 208 ~iNvDfaDvk~vm~ 221 (384)
T PRK09330 208 LINLDFADVKTVMS 221 (384)
T ss_pred cccCCHHHHHHHHh
Confidence 99999999877654
No 30
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=99.54 E-value=3.8e-15 Score=126.99 Aligned_cols=67 Identities=30% Similarity=0.427 Sum_probs=53.0
Q ss_pred EeEEEEecCchhhHHHHHHHHHHHHHcCCCCCCCCCCCcchhccccccccccC-----CCcccceeEEeCCCCCeecc
Q psy17297 2 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEA-----QGGYIPRAILVDLEPGTMDA 74 (456)
Q Consensus 2 ~EiItiq~Gq~gnqiG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~F~e~-----~~~~~pR~l~vD~e~~~i~~ 74 (456)
|||||||+|+.+|+||+||||+| |..+..+.. ......+++++||++ ..+|+||+|++|+++++...
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~Q--e~~~~y~~~----~~~~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~lGsL 72 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNIQ--ESYLPYDPD----EKPSEIDHDVLFREGITLSGTVTYTPRLLLFDLKGGLGSL 72 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhhh--hcccccCcc----ccCcccCCceEEecccCcCCCeeECCcEEEEecCCCcCcc
Confidence 79999999999999999999988 655432221 111345789999998 46999999999999997644
No 31
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=99.31 E-value=1.3e-11 Score=122.84 Aligned_cols=147 Identities=20% Similarity=0.273 Sum_probs=124.6
Q ss_pred cccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCCeeeEEEEEecCCCCCCccchhh
Q psy17297 103 GHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPY 182 (456)
Q Consensus 103 G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~y 182 (456)
+....|++..++..+.|+..++..| -++++.++|||||+|.++.+++.+++ ...+.++++++|+. .|.....-
T Consensus 73 a~P~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf~--~EG~~r~~ 145 (338)
T COG0206 73 ANPEVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPFS--FEGSPRME 145 (338)
T ss_pred CCcHHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecch--hcCchHHH
Confidence 3367889999999999999988887 46889999999999999999999998 37788899999983 45556778
Q ss_pred HHHHHHHHHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCccccCCCCcchhHHhhhhcccc
Q psy17297 183 NAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVP 258 (456)
Q Consensus 183 N~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~~~r~~~~~n~~l~~l~~~L~P 258 (456)
|+.-++..|.+++|.+|+++|+.|.+... ...+ ...|...|.++++.+.+++..+--||.+|.|+.++.+-+..
T Consensus 146 ~A~~gi~~L~~~~DtlIvi~Ndkll~~~~-~~~~-~~Af~~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~vm~~ 219 (338)
T COG0206 146 NAEEGIEELREVVDTLIVIPNDKLLKGKD-KTPI-AEAFNEADDVLGNAVKGITELITKPGLVNVDFADVRTVMKG 219 (338)
T ss_pred HHHHHHHHHHHhCCcEEEEecHHHHhccC-cccH-HHHHHHHHHHHHHHHHHHHHHhccCceEeecHHHHHHHHhc
Confidence 99999999999999999999999987653 2221 23678889999999999998888999999999999887665
No 32
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=98.41 E-value=1.6e-07 Score=80.02 Aligned_cols=114 Identities=24% Similarity=0.367 Sum_probs=86.3
Q ss_pred cchhHHhhhhcccccCCcccccccCccCcCCcccccccCCHHHHHH--hhhccCccccccCCCCCceeeeeecccccCCh
Q psy17297 245 LNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQ--ELFDAKNMMVACDPRHGKYLTVATIFRGELSV 322 (456)
Q Consensus 245 ~n~~l~~l~~~L~P~p~~~fl~~s~~P~~~~~~~~~~~~t~~~l~~--~~~~~~~~~~~~~~~~~~~ls~~~~~RG~~~~ 322 (456)
+|.|++++.++|+|+| |+.++++|.... .+..+..+++. .++++++++..+++.. |+++.. +...
T Consensus 1 in~D~~dl~~~L~p~~---~~~~~~~~~~~~----~~~~~a~~~~~~~~l~~~~~~~~a~~~~~--~l~~~~----~~~~ 67 (120)
T smart00865 1 INVDFADVKTVMVPMG---FAMMGIGPASGE----NRALEAAELAISSPLLEPSNIMGAKGVLV--NITGGP----DLTL 67 (120)
T ss_pred CCCchHHHHHhccCCC---eEEEEEEEecCC----ChHHHHHHHHHhCcccCCcchhhcCceEE--EEEcCC----CCCH
Confidence 4789999999999999 889999998752 34456677777 7888877776655443 666654 6778
Q ss_pred HHHHHHHhhhccCCC-Cceeeecc-CceeeeeecCCCCCCceeEEEeec-CcccHHHHHHHH
Q psy17297 323 KEIDDHIVNIHNNNL-PYYVEWIP-NNIKTALCDIAPKGFKMSGTFIGN-TTAIQGLFQRIM 381 (456)
Q Consensus 323 ~~~~~~~~~~~~~~~-~~f~~w~p-~~~~~~~~~~~p~~~~~s~~~l~N-st~i~~~l~~l~ 381 (456)
.++.+.+..++.+.. ..|+.|.| ..+++. .+.++++| +|+|...|+++.
T Consensus 68 ~ev~~~~~~i~~~~~~~~~v~w~~~~~~~~~----------~~~~~i~ni~t~i~~~~~~~~ 119 (120)
T smart00865 68 KEVNEAMERIREKADPDAFIIWGPVIDEELG----------GDEIRVTVIATGIGSAFKRLS 119 (120)
T ss_pred HHHHHHHHHHHHhcCCCceEEEccccCCcCC----------CCcEEEEEEecccCccccccC
Confidence 899999988877655 78999998 444321 45788999 999999987753
No 33
>PF13809 Tubulin_2: Tubulin like
Probab=97.18 E-value=0.0086 Score=60.96 Aligned_cols=61 Identities=33% Similarity=0.272 Sum_probs=42.5
Q ss_pred eeEEecCCCCccccchHHHHHHHHhhC-----CCeeeEEEEEecCCCCCC---ccchhhHHHHHHHHHh
Q psy17297 132 FQVTHSLGGGTGSGMGTLLLTKIREEY-----PDRMINAFSVVPSPKVSD---TVVEPYNAILSLSHLI 192 (456)
Q Consensus 132 f~i~~sl~GGtGSG~gs~lle~l~dey-----p~~~i~~~~v~P~~~~~~---~~~~~yN~~lsl~~l~ 192 (456)
+.|++|++||||||+---++-.||+.+ ....+..+.++|....+. .....-|+.=+|.+|.
T Consensus 150 V~Vv~SlaGGTGSG~~lDia~~lr~~~~~~~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~ 218 (345)
T PF13809_consen 150 VFVVGSLAGGTGSGMFLDIAYLLRDILKQPGQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELD 218 (345)
T ss_pred EEEEEecCCccchhHHHHHHHHHHHHhhcccCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHH
Confidence 678999999999999888888888866 345688889999722111 1233346655555554
No 34
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=68.36 E-value=21 Score=32.73 Aligned_cols=84 Identities=13% Similarity=0.175 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCcee-EEecCCCCccccchHHHHHHHHhhCCCeeeEEEEEecCCCCCCccchhhHHHHHHH
Q psy17297 111 LVDAVMDLTRREAENCDCMQGFQ-VTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLS 189 (456)
Q Consensus 111 ~~e~~~d~ir~~~E~cD~lqGf~-i~~sl~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~ 189 (456)
+...+.+.|+.++|+ |+. ++.+.+-|+- -.++.++-.|+.+||...+ .+++|+...+..- +-..-.-+.
T Consensus 27 ik~~L~~~i~~lie~-----G~~~fi~GgalG~D-~waae~vl~LK~~yp~ikL--~~v~Pf~~q~~~W--~~~~q~~y~ 96 (177)
T PF06908_consen 27 IKKALKKQIIELIEE-----GVRWFITGGALGVD-LWAAEVVLELKKEYPEIKL--ALVLPFENQGNNW--NEANQERYQ 96 (177)
T ss_dssp HHHHHHHHHHHHHTT-----T--EEEE---TTHH-HHHHHHHHTTTTT-TT-EE--EEEESSB-TTTTS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-----CCCEEEECCcccHH-HHHHHHHHHHHhhhhheEE--EEEEcccchhhcC--CHHHHHHHH
Confidence 445566667777774 433 3334444432 3467778889999996433 5678985444321 113444567
Q ss_pred HHhhcCceeEEecch
Q psy17297 190 HLIETSDETFCIDNE 204 (456)
Q Consensus 190 ~l~e~sd~~i~~~N~ 204 (456)
.|.+.||-++++..+
T Consensus 97 ~il~~aD~v~~vs~~ 111 (177)
T PF06908_consen 97 SILEQADFVVVVSER 111 (177)
T ss_dssp HHHHH-SEEEESSSS
T ss_pred HHHHhCCEEEEccCC
Confidence 777888888888654
No 35
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=66.44 E-value=8.8 Score=32.27 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHhhcCCCCceeEEecCCCCcc
Q psy17297 110 ELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTG 143 (456)
Q Consensus 110 ~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtG 143 (456)
+-.+++.+++++.+++.+.-+|+.++.++.|||-
T Consensus 38 ~~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 38 ESIEDFEEKLEEAIEELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp SCHHHHHHHHHHHHHHCCTTSEEEEEESSTTSHH
T ss_pred CCHHHHHHHHHHHHHhccCCCcEEEEeeCCCCcc
Confidence 3456778889999999999999999999999863
No 36
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=65.67 E-value=6 Score=34.15 Aligned_cols=42 Identities=17% Similarity=0.314 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHH-HHHHHHhh
Q psy17297 112 VDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTL-LLTKIREE 157 (456)
Q Consensus 112 ~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~-lle~l~de 157 (456)
.+...++|+..++++|. +|..++.++ ||| =+-.. .+|.+.++
T Consensus 41 ~gt~~~~i~~ai~~~~~-dGVlVltDL-Gss--p~n~~~a~e~~~~~ 83 (124)
T PRK14484 41 IGTSFDQIQEAIEKNES-DGVLIFFDL-GSA--EMNAEMAIEMLDGE 83 (124)
T ss_pred ccchHHHHHHHHHhcCc-CCeEEEEeC-CCh--HHHHHHHHHhcCCC
Confidence 44567889999999999 999999999 775 34333 34444434
No 37
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=58.17 E-value=11 Score=32.59 Aligned_cols=29 Identities=34% Similarity=0.692 Sum_probs=22.9
Q ss_pred CCccccchHHHHHHHHhhCCC-eeeEEEEE
Q psy17297 140 GGTGSGMGTLLLTKIREEYPD-RMINAFSV 168 (456)
Q Consensus 140 GGtGSG~gs~lle~l~deyp~-~~i~~~~v 168 (456)
+|-|.|+|..+++.||.++|. ..+++...
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~~~eI~AlGT 35 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPEEVEIIALGT 35 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCCCcEEEEEeh
Confidence 345668999999999999998 66766653
No 38
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=57.64 E-value=42 Score=28.32 Aligned_cols=32 Identities=9% Similarity=0.124 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhcCCCCceeEEecCCCCcc
Q psy17297 112 VDAVMDLTRREAENCDCMQGFQVTHSLGGGTG 143 (456)
Q Consensus 112 ~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtG 143 (456)
.+++.++++..+++.+.=+|+.++.++-|||=
T Consensus 41 ~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp 72 (116)
T TIGR00824 41 AETLQEKYNAALADLDTEEEVLFLVDIFGGSP 72 (116)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 56788888888888877789999999999973
No 39
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=51.93 E-value=42 Score=28.42 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCceeEEecCCCCc
Q psy17297 111 LVDAVMDLTRREAENCDCMQGFQVTHSLGGGT 142 (456)
Q Consensus 111 ~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGt 142 (456)
-.+++.+++++.+++.+.-+|+.++.++-|||
T Consensus 39 ~~~~~~~~i~~~i~~~~~~~~viil~Dl~GGS 70 (122)
T cd00006 39 SPDDLLEKIKAALAELDSGEGVLILTDLFGGS 70 (122)
T ss_pred CHHHHHHHHHHHHHHhCCCCcEEEEEeCCCCC
Confidence 35567788888888888889999999999987
No 40
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=47.08 E-value=37 Score=29.61 Aligned_cols=61 Identities=23% Similarity=0.329 Sum_probs=38.5
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCCeeeEEE
Q psy17297 102 KGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAF 166 (456)
Q Consensus 102 ~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~~~i~~~ 166 (456)
+|++.....+...+...+++...++..-+=+.+=||+||+. +..+...++...+...+-.+
T Consensus 1 ~Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~l----A~l~a~~~~~~~~~~~~~~~ 61 (153)
T cd00741 1 KGFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGAL----AGLAGLDLRGRGLGRLVRVY 61 (153)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHH----HHHHHHHHHhccCCCceEEE
Confidence 35666667777777777877777666666667778997754 45555556655333333333
No 41
>PLN02847 triacylglycerol lipase
Probab=43.52 E-value=30 Score=37.69 Aligned_cols=62 Identities=24% Similarity=0.276 Sum_probs=41.2
Q ss_pred ccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHh--hCCCeeeEEEE
Q psy17297 102 KGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIRE--EYPDRMINAFS 167 (456)
Q Consensus 102 ~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~d--eyp~~~i~~~~ 167 (456)
+|++...+.+.+.+...|++.++++...+=+.+=||||||+ ++.+.-.|+. ++++...++|+
T Consensus 224 ~Gml~AArwI~~~i~~~L~kal~~~PdYkLVITGHSLGGGV----AALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 224 CGMVAAARWIAKLSTPCLLKALDEYPDFKIKIVGHSLGGGT----AALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEeccChHHHH----HHHHHHHHhcCCCCCCceEEEec
Confidence 45555556677778888899999987766566778998866 3444555564 45555444444
No 42
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=40.52 E-value=27 Score=30.10 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhcCC-CCceeEEecCCCCccccchH-HHHHHHH
Q psy17297 112 VDAVMDLTRREAENCDC-MQGFQVTHSLGGGTGSGMGT-LLLTKIR 155 (456)
Q Consensus 112 ~e~~~d~ir~~~E~cD~-lqGf~i~~sl~GGtGSG~gs-~lle~l~ 155 (456)
.+.+.++|++.+|+++. =+|+.++.++ ||+ =+.+ ..++.+.
T Consensus 41 ~gt~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs--~~n~e~a~~~l~ 83 (125)
T TIGR02364 41 LGTSPDKIIEAIEKADNEADGVLIFYDL-GSA--VMNAEMAVELLE 83 (125)
T ss_pred ccchHHHHHHHHHHhcCCCCCEEEEEcC-CCc--HhHHHHHHHHhc
Confidence 44566788899999966 8999999999 764 2322 3455554
No 43
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=36.82 E-value=1.5e+02 Score=29.73 Aligned_cols=92 Identities=8% Similarity=0.028 Sum_probs=48.5
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCCeeeEEEEEecCCCCCCccchhhHHHH
Q psy17297 107 EGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAIL 186 (456)
Q Consensus 107 ~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~l 186 (456)
...+.+..+.+.|++.+++ .+||.|+|+..- --.++.++..+-+..+|-.+++=+..|....+.......-.++
T Consensus 54 ~t~~~~~~la~~i~~~~~~---~~GvVVtHGTDT---me~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av 127 (313)
T PF00710_consen 54 MTPEDWLELARAIQAALDD---YDGVVVTHGTDT---MEETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAV 127 (313)
T ss_dssp --HHHHHHHHHHHHHHHTT---CSEEEEE--STT---HHHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh---cCeEEEecCchH---HHHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHH
Confidence 3456666777777777744 899999996532 1345566666655555556666678887443333334333334
Q ss_pred HHHHHhhcCceeEEecch
Q psy17297 187 SLSHLIETSDETFCIDNE 204 (456)
Q Consensus 187 sl~~l~e~sd~~i~~~N~ 204 (456)
.+..-.+..-..++|++.
T Consensus 128 ~~A~~~~~~GV~v~f~~~ 145 (313)
T PF00710_consen 128 RVAASPAGPGVLVVFNGR 145 (313)
T ss_dssp HHHHSGGTSSEEEEETTE
T ss_pred HHHhcccCCceEEEeCCC
Confidence 444433455566666555
No 44
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=35.02 E-value=26 Score=31.75 Aligned_cols=48 Identities=10% Similarity=0.274 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHhh--ccccccchhhhccCCCChhhHHHHHHHHHHHHHHHHHHhh
Q psy17297 373 IQGLFQRIMDQFCS--MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQE 426 (456)
Q Consensus 373 i~~~l~~l~~~~~~--m~~krAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~ 426 (456)
|...+.+|.+-+.. =|..-.||+||+.|+.||+. .+.+|++-++-++.
T Consensus 97 vt~~I~~L~~~a~~~kD~~T~nFLqWfv~EQ~eEe~------l~~~I~d~~~~ag~ 146 (167)
T COG1528 97 VTSSINELAEVAREEKDYATFNFLQWFVAEQVEEEK------LFKTILDKLELAGN 146 (167)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHcCC
Confidence 34444455444433 46678899999999987765 34455555544443
No 45
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=34.94 E-value=1.4e+02 Score=30.17 Aligned_cols=94 Identities=17% Similarity=0.145 Sum_probs=54.9
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCCeeeEEEEEecCCCCCCccchhhHHHH
Q psy17297 107 EGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAIL 186 (456)
Q Consensus 107 ~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~l 186 (456)
...+.+..+.+.|+..+ +..+||.|+|+.+ | --.++.+++.+-...+|-.+++=+-.|....+......+..++
T Consensus 63 mt~~~w~~la~~I~~~~---~~~dG~VVtHGTD--T-meeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 63 MTPEDWQHIADDIKANY---DDYDGFVILHGTD--T-MAYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred CCHHHHHHHHHHHHHHh---ccCCeEEEeeccc--h-HHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 34556667777777655 5689999999653 2 2456777776555445555666667786444444445555555
Q ss_pred HHHHHhhcCceeEEecchhhH
Q psy17297 187 SLSHLIETSDETFCIDNEALY 207 (456)
Q Consensus 187 sl~~l~e~sd~~i~~~N~~l~ 207 (456)
.+..-...+-..++| |+.++
T Consensus 137 ~~A~~~~~~GV~V~f-~~~i~ 156 (335)
T PRK09461 137 YVAANYPINEVTLFF-NNKLF 156 (335)
T ss_pred HHHcCCCCCeEEEEE-CCEee
Confidence 554432334455555 44443
No 46
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=34.84 E-value=47 Score=31.20 Aligned_cols=59 Identities=22% Similarity=0.309 Sum_probs=40.2
Q ss_pred ccccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCC
Q psy17297 97 ANNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYP 159 (456)
Q Consensus 97 gnnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp 159 (456)
+....+|++.....+.+.+...++..++++...+=+..=|||||| +++.+.-.|+..++
T Consensus 96 ~~~vh~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGa----iA~l~a~~l~~~~~ 154 (229)
T cd00519 96 GGKVHSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGA----LASLLALDLRLRGP 154 (229)
T ss_pred CcEEcHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHH----HHHHHHHHHHhhCC
Confidence 334456777666777788888888888887666556667799775 55666666666643
No 47
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=32.91 E-value=1.4e+02 Score=29.32 Aligned_cols=76 Identities=21% Similarity=0.237 Sum_probs=51.3
Q ss_pred HHHHHHHhhcCCCCceeEEecCCCCccccch-----HHHHHHHHhhCCCee-eEEEEEecCCCCCCccchhhHHHHHHHH
Q psy17297 117 DLTRREAENCDCMQGFQVTHSLGGGTGSGMG-----TLLLTKIREEYPDRM-INAFSVVPSPKVSDTVVEPYNAILSLSH 190 (456)
Q Consensus 117 d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~g-----s~lle~l~deyp~~~-i~~~~v~P~~~~~~~~~~~yN~~lsl~~ 190 (456)
++|++.+|.+ +||.-+.|..|-||+-.. ..+++++|.-- ++| ...|+|-- . =....
T Consensus 161 ~rl~~i~~~a---~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGFGIs~----~----------e~~~~ 222 (265)
T COG0159 161 ERLKKIAEAA---SGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT-DVPVLVGFGISS----P----------EQAAQ 222 (265)
T ss_pred HHHHHHHHhC---CCcEEEEecccccCCCcccchhHHHHHHHHHHhc-CCCeEEecCcCC----H----------HHHHH
Confidence 5677777766 899999999999998554 55777888755 444 34454421 1 14556
Q ss_pred HhhcCceeEEecchhhHhhhhh
Q psy17297 191 LIETSDETFCIDNEALYDICVR 212 (456)
Q Consensus 191 l~e~sd~~i~~~N~~l~~~~~~ 212 (456)
+.+.||++|+= .++.++..+
T Consensus 223 v~~~ADGVIVG--SAiV~~i~~ 242 (265)
T COG0159 223 VAEAADGVIVG--SAIVKIIEE 242 (265)
T ss_pred HHHhCCeEEEc--HHHHHHHHh
Confidence 67789999984 466555544
No 48
>PRK13660 hypothetical protein; Provisional
Probab=32.52 E-value=2.8e+02 Score=25.59 Aligned_cols=108 Identities=16% Similarity=0.242 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHhhcCCCCceeEEecCCCCcccc-chHHHHHHHHhhCCCeeeEEEEEecCCCCCCccchhhHHHHHHH
Q psy17297 111 LVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSG-MGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLS 189 (456)
Q Consensus 111 ~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG-~gs~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~ 189 (456)
+...+.+.|+.++|+ |+.-+ =.||..|-- .++.++-.||.+||..-+ .+++|+...++.=- -..---+.
T Consensus 27 IK~aL~~~l~~~~e~-----G~~wf-i~ggalG~d~wAaEvvl~LK~~yp~lkL--~~~~PF~~q~~~W~--e~~q~~y~ 96 (182)
T PRK13660 27 IKKAIKRKLIALLEE-----GLEWV-IISGQLGVELWAAEVVLELKEEYPDLKL--AVITPFEEHGENWN--EANQEKLA 96 (182)
T ss_pred HHHHHHHHHHHHHHC-----CCCEE-EECCcchHHHHHHHHHHHHHhhCCCeEE--EEEeCccchhhcCC--HHHHHHHH
Confidence 334555666666663 43211 122333222 266788889999996543 34678744333211 12233455
Q ss_pred HHhhcCceeEEecchhhHhhhhhccCCCCCCcccccHHHHHhhccCCc
Q psy17297 190 HLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITT 237 (456)
Q Consensus 190 ~l~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~via~~i~~~t~ 237 (456)
.+.+.||-++.+....- -.+..|..-|+.+...-+.+.+
T Consensus 97 ~i~~~aD~v~~vs~~~y---------~~p~q~~~rn~fmv~~sd~~i~ 135 (182)
T PRK13660 97 NILKQADFVKSISKRPY---------ESPAQFRQYNQFMLEHTDGALL 135 (182)
T ss_pred HHHHhCCEEEEecCCCC---------CChHHHHHHHHHHHHccCeEEE
Confidence 66778898888743211 0011355566666665554443
No 49
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=30.23 E-value=68 Score=31.47 Aligned_cols=65 Identities=15% Similarity=0.280 Sum_probs=30.7
Q ss_pred ccccCccccccchhhHHHHH-HHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCCeeeEEEEE
Q psy17297 97 ANNWAKGHYTEGVELVDAVM-DLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSV 168 (456)
Q Consensus 97 gnnwa~G~~~~g~~~~e~~~-d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~~~i~~~~v 168 (456)
.-.++-|||..+.+-+++.. .++...+|+++-=.| .=+-++|.||| |+.-.+ ...| +..+..+.+
T Consensus 28 ~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G-~~vLDiGcGwG-~~~~~~----a~~~-g~~v~gitl 93 (273)
T PF02353_consen 28 TMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPG-DRVLDIGCGWG-GLAIYA----AERY-GCHVTGITL 93 (273)
T ss_dssp T---S----SSTT--HHHHHHHHHHHHHTTTT--TT--EEEEES-TTS-HHHHHH----HHHH---EEEEEES
T ss_pred CCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCC-CEEEEeCCCcc-HHHHHH----HHHc-CcEEEEEEC
Confidence 34566777777766455444 448888888875555 45668888887 555444 4446 344444443
No 50
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=30.21 E-value=2e+02 Score=29.00 Aligned_cols=92 Identities=13% Similarity=0.059 Sum_probs=55.3
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCCeeeEEEEEecCCCCCCccchhhHHHH
Q psy17297 107 EGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAIL 186 (456)
Q Consensus 107 ~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~l 186 (456)
...+.+..+.+.|++.+++ .+||.|+|+.+ | --.++..+..+-+. +|-.+++=+-.|....+.........++
T Consensus 60 ~t~~~w~~l~~~I~~~~~~---~dGiVVtHGTD--T-meeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al 132 (323)
T cd00411 60 MTDEDWLKIAKDINELYDS---YDGFVITHGTD--T-MEETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAV 132 (323)
T ss_pred CCHHHHHHHHHHHHHHHHh---cCcEEEEcCcc--c-HHHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 3456667777778777663 79999999642 2 23456666655444 5555666667786444444455555555
Q ss_pred HHHHHhh--cCceeEEecchh
Q psy17297 187 SLSHLIE--TSDETFCIDNEA 205 (456)
Q Consensus 187 sl~~l~e--~sd~~i~~~N~~ 205 (456)
.+....+ .....|+|++.-
T Consensus 133 ~~A~~~~~~~~gV~V~f~~~i 153 (323)
T cd00411 133 YVAANYDSRGRGVLVVFNDRI 153 (323)
T ss_pred HHHcCcccCCCeEEEEECCEE
Confidence 5554333 445677775543
No 51
>KOG3178|consensus
Probab=29.37 E-value=1e+02 Score=31.39 Aligned_cols=41 Identities=27% Similarity=0.451 Sum_probs=29.9
Q ss_pred HHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCCeeeEEE
Q psy17297 121 REAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAF 166 (456)
Q Consensus 121 ~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~~~i~~~ 166 (456)
+.++.+..+.|+....+.|||+| ..+=..++ .||+.-.++|
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG----~v~k~ll~-~fp~ik~inf 207 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGIG----RVLKNLLS-KYPHIKGINF 207 (342)
T ss_pred hhhhhhcccccCceEEEcCCcHh----HHHHHHHH-hCCCCceeec
Confidence 45777878888999999998776 44444455 8998766555
No 52
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=28.90 E-value=32 Score=33.65 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHH
Q psy17297 114 AVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTK 153 (456)
Q Consensus 114 ~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~ 153 (456)
+++++||+.+++-..+ +++|.|+|+.++..|.
T Consensus 2 eil~~l~~~i~~~~pI--------ig~gaGtGlsAk~ae~ 33 (268)
T PF09370_consen 2 EILDRLRAQIKAGKPI--------IGAGAGTGLSAKCAEK 33 (268)
T ss_dssp HHHHHHHHHHHTT--E--------EEEEESSHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCce--------EEEeeccchhhHHHHh
Confidence 6788999999977665 5678889999888765
No 53
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=28.53 E-value=1.6e+02 Score=29.71 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHhhcCCCCceeEEecCCCCcc
Q psy17297 111 LVDAVMDLTRREAENCDCMQGFQVTHSLGGGTG 143 (456)
Q Consensus 111 ~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtG 143 (456)
-.+++.++++..+++.+.-+|+.++.++-|||=
T Consensus 41 ~~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP 73 (322)
T PRK15088 41 NAETLIEKYNAQLAKLDTSKGVLFLVDTWGGSP 73 (322)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 356777888888888887789999999999874
No 54
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=28.28 E-value=31 Score=29.33 Aligned_cols=56 Identities=21% Similarity=0.319 Sum_probs=35.2
Q ss_pred Cccccccch-hhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCC
Q psy17297 101 AKGHYTEGV-ELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPD 160 (456)
Q Consensus 101 a~G~~~~g~-~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~ 160 (456)
..|++..-. ...+.+.+.|+..+++.-...=...=||+||| ++..+.-.+....+.
T Consensus 35 h~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGa----lA~l~a~~l~~~~~~ 91 (140)
T PF01764_consen 35 HSGFLDAAEDSLYDQILDALKELVEKYPDYSIVITGHSLGGA----LASLAAADLASHGPS 91 (140)
T ss_dssp EHHHHHHHHCHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHH----HHHHHHHHHHHCTTT
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhcccCccchhhccchHHH----HHHHHHHhhhhcccc
Confidence 345554445 66778888888888877643333445688664 556666666666543
No 55
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=24.73 E-value=92 Score=25.51 Aligned_cols=53 Identities=26% Similarity=0.414 Sum_probs=40.1
Q ss_pred eecCcccHHHHHH-------HHHHHhhccccccchhhhccCCCC--hhhHHHHHHHHHHHHHHHHHH
Q psy17297 367 IGNTTAIQGLFQR-------IMDQFCSMFRRKAFLHWYTVEGMD--EFEFHEAGANVEDLICEYQQY 424 (456)
Q Consensus 367 l~Nst~i~~~l~~-------l~~~~~~m~~krAflH~Y~~~Gme--e~eF~Ea~~~l~~l~~~Y~~~ 424 (456)
++|.++|...|.. +++.-.++-.+|+|. ||+. -....||+..|..+.+++++-
T Consensus 28 IanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~-----E~lQdkL~qi~eAR~AlDalR~eH~~k 89 (96)
T PF12210_consen 28 IANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYY-----EGLQDKLAQIKEARAALDALREEHREK 89 (96)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888864 567777788888655 3443 456899999999999999864
No 56
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=24.72 E-value=30 Score=30.26 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=19.1
Q ss_pred cccccchhhhccCCCChhhHHHHHHHHHHHH
Q psy17297 388 FRRKAFLHWYTVEGMDEFEFHEAGANVEDLI 418 (456)
Q Consensus 388 ~~krAflH~Y~~~Gmee~eF~Ea~~~l~~l~ 418 (456)
-+|++|| ++-||.++|++||+....+-.
T Consensus 24 ~~k~~FL---~sKGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 24 EKKIAFL---ESKGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHH---HHCT--HHHHHHHHHHHT--S
T ss_pred HHHHHHH---HcCCCCHHHHHHHHHhcCCcc
Confidence 4677888 456999999999999766655
No 57
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=24.05 E-value=2.5e+02 Score=21.65 Aligned_cols=53 Identities=11% Similarity=0.236 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhc--CCCCceeEEecCC----CCccccchHHHHHHHHhhCCCeeeEEEEE
Q psy17297 113 DAVMDLTRREAENC--DCMQGFQVTHSLG----GGTGSGMGTLLLTKIREEYPDRMINAFSV 168 (456)
Q Consensus 113 e~~~d~ir~~~E~c--D~lqGf~i~~sl~----GGtGSG~gs~lle~l~deyp~~~i~~~~v 168 (456)
++..+.++..+++| ...+.+.|+|+.| +|. +-..+.+.|++.+....+..+.-
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~~ 67 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYRD 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheeee
Confidence 34455566666665 3557889999888 554 77778888876555555555543
No 58
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.97 E-value=82 Score=27.29 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcC
Q psy17297 404 EFEFHEAGANVEDLICEYQQYQEAS 428 (456)
Q Consensus 404 e~eF~Ea~~~l~~l~~~Y~~~~~~~ 428 (456)
+.+|.+.-+-|..++.+|+.+.+-.
T Consensus 58 ~~HFa~sAeLlktl~~dYqklyqHm 82 (138)
T COG3105 58 VKHFARSAELLKTLAQDYQKLYQHM 82 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999886553
No 59
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=23.11 E-value=84 Score=29.86 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=21.7
Q ss_pred EEecCCCCccccchHHHHHHHHhhCCCe
Q psy17297 134 VTHSLGGGTGSGMGTLLLTKIREEYPDR 161 (456)
Q Consensus 134 i~~sl~GGtGSG~gs~lle~l~deyp~~ 161 (456)
++-+++||.|||= +-++..|.+.++..
T Consensus 9 iiIgIaG~SgSGK-TTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGK-TTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCH-HHHHHHHHHHhCcC
Confidence 5668999999998 56778888888754
No 60
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=22.52 E-value=5.8e+02 Score=23.52 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=60.7
Q ss_pred chhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHH--HHHHHHhhCCCeeeEEEEEecCC-CCCCccchhhHH
Q psy17297 108 GVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTL--LLTKIREEYPDRMINAFSVVPSP-KVSDTVVEPYNA 184 (456)
Q Consensus 108 g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~--lle~l~deyp~~~i~~~~v~P~~-~~~~~~~~~yN~ 184 (456)
..+....+...+++....=..+.|+||-++.. | |.+..+ +++.||...|.-..+++.-+|.= ..++
T Consensus 22 ~~~~~~~i~~~l~~W~~~G~~v~giQIDfDa~--t-~~L~~Y~~fL~~LR~~LP~~~~LSIT~L~dW~~~~~-------- 90 (181)
T PF11340_consen 22 PEQVLARILQLLQRWQAAGNNVAGIQIDFDAA--T-SRLPAYAQFLQQLRQRLPPDYRLSITALPDWLSSPD-------- 90 (181)
T ss_pred CHHHHHHHHHHHHHHHHcCCCceEEEEecCcc--c-cchHHHHHHHHHHHHhCCCCceEeeEEehhhhcCch--------
Confidence 46777788888888888888999999988763 3 566554 78999999998888888877751 1111
Q ss_pred HHHHHHHhhcCceeEEe
Q psy17297 185 ILSLSHLIETSDETFCI 201 (456)
Q Consensus 185 ~lsl~~l~e~sd~~i~~ 201 (456)
.|..|....|-+++-
T Consensus 91 --~L~~L~~~VDE~VlQ 105 (181)
T PF11340_consen 91 --WLNALPGVVDELVLQ 105 (181)
T ss_pred --hhhhHhhcCCeeEEE
Confidence 567777778887775
No 61
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=22.22 E-value=6e+02 Score=26.73 Aligned_cols=94 Identities=12% Similarity=0.078 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCCeeeEEEEEecCCCCC---CccchhhHHHHH
Q psy17297 111 LVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVS---DTVVEPYNAILS 187 (456)
Q Consensus 111 ~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~~---~~~~~~yN~~ls 187 (456)
..+...+.|...+ ..+.++++-|+.+.+.|+|+++...|++.|+.-=-...+++.--.|..... ..+..+.|--..
T Consensus 151 ~~~~Yi~~l~~~i-d~~~~~~lkVvvD~~~G~~~~~~~~l~~~l~~lG~~v~v~~~~~~pdg~F~~~~p~P~~~~~l~~l 229 (456)
T PRK15414 151 LRDAYVDHLFGYI-NVKNLTPLKLVINSGNGAAGPVVDAIEARFKALGAPVELIKVHNTPDGNFPNGIPNPLLPECRDDT 229 (456)
T ss_pred cHHHHHHHHHHhc-ccccCCCCEEEEECCCCcchhhHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCCCCCCHHHHHHH
Confidence 4455555555544 123468999999999999989998886655542111122222222221111 112223332222
Q ss_pred HHHH-hhcCceeEEecchh
Q psy17297 188 LSHL-IETSDETFCIDNEA 205 (456)
Q Consensus 188 l~~l-~e~sd~~i~~~N~~ 205 (456)
...+ ...+|+.+.+|-|+
T Consensus 230 ~~~v~~~~adlGia~DgDa 248 (456)
T PRK15414 230 RNAVIKHGADMGIAFDGDF 248 (456)
T ss_pred HHHHHHcCCCEEEEECCCc
Confidence 2222 34589999998775
No 62
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=21.93 E-value=2.6e+02 Score=24.61 Aligned_cols=62 Identities=18% Similarity=0.115 Sum_probs=39.2
Q ss_pred cccCccccccchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCCeeeE
Q psy17297 98 NNWAKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMIN 164 (456)
Q Consensus 98 nnwa~G~~~~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~~~i~ 164 (456)
|.++..++ .+....+...+.+...++.-|+=+|+.++.++-|||= ..++-.+..+.|..-++
T Consensus 29 nv~~v~~~-~~~~~~~~l~~~~~~~~~~~d~~eevl~ltDl~GGSP----~N~A~~l~~~~~~~~vi 90 (143)
T COG2893 29 NVEAVDFV-PGEDSEDLLTKQIAAAIAALDSGEGVLFLTDLFGGSP----FNVASRLAMEGPRVEVI 90 (143)
T ss_pred ceEEEEee-cCCChHHHHHHHHHHHHhhcCCCCcEEEEEecCCCCH----hHHHHHHHhhCCCceEE
Confidence 44444443 2334445555666666777777799999999998874 44555555666665333
No 63
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=21.60 E-value=3.6e+02 Score=28.12 Aligned_cols=91 Identities=13% Similarity=0.094 Sum_probs=53.4
Q ss_pred chhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCCeeeEEEEEecCCCCCCccchhhHHHHH
Q psy17297 108 GVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILS 187 (456)
Q Consensus 108 g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~ls 187 (456)
..+.+..+-+.|+..++ |..+||.|+|+.+ | --.++..+..+-+..|+=.+++=+-.|....+.......-+++.
T Consensus 121 tp~~w~~La~~I~~~~~--~~~dGvVVtHGTD--T-M~yTA~aLs~~l~~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av~ 195 (404)
T TIGR02153 121 KPEYWIKIAEAVAKALK--EGADGVVVAHGTD--T-MAYTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAVR 195 (404)
T ss_pred CHHHHHHHHHHHHHHhh--cCCCcEEEecCCh--h-HHHHHHHHHHHhhCCCCCEEEECCCCCCCCCCchHHHHHHHHHH
Confidence 45666777788887775 4569999999652 2 24566666655444455455666677764433333333334444
Q ss_pred HHHHhhcCceeEEecch
Q psy17297 188 LSHLIETSDETFCIDNE 204 (456)
Q Consensus 188 l~~l~e~sd~~i~~~N~ 204 (456)
++.- ..+-..++|+++
T Consensus 196 ~A~~-~~~gV~V~f~g~ 211 (404)
T TIGR02153 196 AATS-PIAEVTVVMHGE 211 (404)
T ss_pred HHhC-CCCcEEEEECCc
Confidence 4432 456677777664
No 64
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=21.57 E-value=98 Score=23.34 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=18.6
Q ss_pred ccchHHHHHHHHhhCCCeeeEE
Q psy17297 144 SGMGTLLLTKIREEYPDRMINA 165 (456)
Q Consensus 144 SG~gs~lle~l~deyp~~~i~~ 165 (456)
-|+|+.|+..+.+.++++.+..
T Consensus 41 ~Gig~~ll~~~~~~~~~~~i~l 62 (79)
T PF13508_consen 41 KGIGSKLLNYLLEKAKSKKIFL 62 (79)
T ss_dssp SSHHHHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCcEEE
Confidence 5899999999999998777653
No 65
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=21.47 E-value=2.6e+02 Score=27.14 Aligned_cols=74 Identities=20% Similarity=0.303 Sum_probs=41.5
Q ss_pred HHHHHHHhhcCCCCceeEEecCCCCcccc--chHHH---HHHHHhhCCCeeeEEEEEecCCCCCCccchhhHHHHHHHHH
Q psy17297 117 DLTRREAENCDCMQGFQVTHSLGGGTGSG--MGTLL---LTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHL 191 (456)
Q Consensus 117 d~ir~~~E~cD~lqGf~i~~sl~GGtGSG--~gs~l---le~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l 191 (456)
++|+..++. ..||..+.|..|-||.. +...+ ++.+|...+....+.+.| ++.-....+
T Consensus 154 eri~~i~~~---~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI--------------~~~e~~~~~ 216 (256)
T TIGR00262 154 ERLKQIAEK---SQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGI--------------SKPEQVKQA 216 (256)
T ss_pred HHHHHHHHh---CCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCC--------------CCHHHHHHH
Confidence 456666665 46788888877888763 54444 444555432211222222 222355667
Q ss_pred hhc-CceeEEecchhhHhh
Q psy17297 192 IET-SDETFCIDNEALYDI 209 (456)
Q Consensus 192 ~e~-sd~~i~~~N~~l~~~ 209 (456)
.+. +|++++= .++.+.
T Consensus 217 ~~~GADgvVvG--Saiv~~ 233 (256)
T TIGR00262 217 IDAGADGVIVG--SAIVKI 233 (256)
T ss_pred HHcCCCEEEEC--HHHHHH
Confidence 788 9988874 355443
No 66
>PTZ00489 glutamate 5-kinase; Provisional
Probab=21.19 E-value=4.1e+02 Score=25.93 Aligned_cols=47 Identities=17% Similarity=0.046 Sum_probs=26.9
Q ss_pred HHhhCCCeeeEEEEEecCCCCCCccchhhHHHHHHHHHhhcCceeEEec
Q psy17297 154 IREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCID 202 (456)
Q Consensus 154 l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~ 202 (456)
..+.+.+..+.+..+++....-.......|+.-++..|.+. .+||+=
T Consensus 87 y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~--g~VPIi 133 (264)
T PTZ00489 87 YYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISH--KVIPII 133 (264)
T ss_pred HHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHC--CCEEEE
Confidence 44454444455555655432223334455888888888887 456663
No 67
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=21.00 E-value=3.6e+02 Score=27.06 Aligned_cols=95 Identities=12% Similarity=0.035 Sum_probs=51.0
Q ss_pred chhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCCeeeEEEEEecCCCCCCccchhhHHHHH
Q psy17297 108 GVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILS 187 (456)
Q Consensus 108 g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~ls 187 (456)
..+.+..+.+.|+..+. -+..+||.|+|+.. | --.++..+..+-+..+|-.+++=+-.|....+.........++.
T Consensus 58 t~~~w~~la~~i~~~~~-~~~~dG~VVtHGTD--T-meeTA~~Ls~~l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~Av~ 133 (323)
T smart00870 58 TPADWLKLAKRINEALA-DDGYDGVVVTHGTD--T-LEETAYFLSLTLDSLDKPVVLTGAMRPATALSSDGPANLLDAVR 133 (323)
T ss_pred CHHHHHHHHHHHHHHhc-cCCCCEEEEecCCc--c-HHHHHHHHHHHhhcCCCCEEEECCCCCCCCCCchhHHHHHHHHH
Confidence 34445555555655433 25789999999653 2 24456666655554455455665677764434333444444444
Q ss_pred HHHHhh--cCceeEEecchhhH
Q psy17297 188 LSHLIE--TSDETFCIDNEALY 207 (456)
Q Consensus 188 l~~l~e--~sd~~i~~~N~~l~ 207 (456)
+..-.+ ..-..++| |+.++
T Consensus 134 ~A~~~~a~~~GV~V~f-~~~i~ 154 (323)
T smart00870 134 VAASPEARGRGVLVVF-NDEIH 154 (323)
T ss_pred HHcCcccCCCEEEEEE-CCEee
Confidence 443322 33455555 55554
No 68
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=20.77 E-value=64 Score=19.80 Aligned_cols=13 Identities=38% Similarity=0.992 Sum_probs=9.3
Q ss_pred CCCccccchHHHH
Q psy17297 139 GGGTGSGMGTLLL 151 (456)
Q Consensus 139 ~GGtGSG~gs~ll 151 (456)
+||.|+|++-.++
T Consensus 1 ~gg~g~gf~livV 13 (26)
T TIGR01732 1 GGGYGGGFALIVV 13 (26)
T ss_pred CCccCcchHHHHH
Confidence 5788888876554
No 69
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=20.73 E-value=3e+02 Score=26.83 Aligned_cols=73 Identities=15% Similarity=0.127 Sum_probs=43.8
Q ss_pred HHHHHHHHhhcCCCCceeEEecCCCCcccc--ch---HHHHHHHHhhCCCeee-EEEEEecCCCCCCccchhhHHHHHHH
Q psy17297 116 MDLTRREAENCDCMQGFQVTHSLGGGTGSG--MG---TLLLTKIREEYPDRMI-NAFSVVPSPKVSDTVVEPYNAILSLS 189 (456)
Q Consensus 116 ~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG--~g---s~lle~l~deyp~~~i-~~~~v~P~~~~~~~~~~~yN~~lsl~ 189 (456)
.++|++.++.+ +||.-+.|.-|=||.. +. ..+++.+|... +.++ +.|.| |+.-...
T Consensus 157 ~eri~~i~~~a---~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t-~~Pi~vGFGI--------------~~~e~~~ 218 (263)
T CHL00200 157 KSRIQKIARAA---PGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT-NKPIILGFGI--------------STSEQIK 218 (263)
T ss_pred HHHHHHHHHhC---CCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc-CCCEEEECCc--------------CCHHHHH
Confidence 35677776666 7889888888888763 22 23455566533 3333 33333 2222456
Q ss_pred HHhhc-CceeEEecchhhHh
Q psy17297 190 HLIET-SDETFCIDNEALYD 208 (456)
Q Consensus 190 ~l~e~-sd~~i~~~N~~l~~ 208 (456)
.+.++ +|++|+= .++.+
T Consensus 219 ~~~~~GADGvVVG--Salv~ 236 (263)
T CHL00200 219 QIKGWNINGIVIG--SACVQ 236 (263)
T ss_pred HHHhcCCCEEEEC--HHHHH
Confidence 67888 9998883 34443
No 70
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=20.69 E-value=2.9e+02 Score=27.94 Aligned_cols=95 Identities=15% Similarity=0.076 Sum_probs=55.4
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCccccchHHHHHHHHhhCCCeeeEEEEEecCCCCCCccchhhHHHH
Q psy17297 107 EGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAIL 186 (456)
Q Consensus 107 ~g~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtGSG~gs~lle~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~l 186 (456)
...+.+..+.+.|+..+++ .+||.|+|+.+ | --.++..+..+-+. +|-.+++=+-.|....+.........++
T Consensus 59 ~tp~~w~~la~~I~~~~~~---~dG~VVtHGTD--T-me~TA~~Ls~~l~~-~kPVVlTGsmrp~~~~~sDg~~NL~~Al 131 (336)
T TIGR00519 59 MKPEYWVEIAEAVKKEYDD---YDGFVITHGTD--T-MAYTAAALSFMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAV 131 (336)
T ss_pred CCHHHHHHHHHHHHHHHhc---CCeEEEccCCc--h-HHHHHHHHHHHcCC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 3466677777888777663 89999999653 2 24566666655444 5555666667776444444455555555
Q ss_pred HHHHHhhc-----CceeEEecchhhHh
Q psy17297 187 SLSHLIET-----SDETFCIDNEALYD 208 (456)
Q Consensus 187 sl~~l~e~-----sd~~i~~~N~~l~~ 208 (456)
......+. -..++++-|+.|+.
T Consensus 132 ~~A~~~~~~~~i~~~gV~v~f~~~i~~ 158 (336)
T TIGR00519 132 RAATEYIAEVTVCMHGVTLDFNCRLHR 158 (336)
T ss_pred HHHcCccccccccCceeEEEccCeEee
Confidence 55543331 12444445555643
No 71
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=20.25 E-value=3.9e+02 Score=24.21 Aligned_cols=88 Identities=10% Similarity=0.016 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCceeEEecCCCCcc---ccchHHHHHHHHhhCCC-eeeEEEEEecCCCCCCccchhhHH
Q psy17297 109 VELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTG---SGMGTLLLTKIREEYPD-RMINAFSVVPSPKVSDTVVEPYNA 184 (456)
Q Consensus 109 ~~~~e~~~d~ir~~~E~cD~lqGf~i~~sl~GGtG---SG~gs~lle~l~deyp~-~~i~~~~v~P~~~~~~~~~~~yN~ 184 (456)
++..+.+.+.+..++++- .++|+.|----.+..+ .--=..+++.||+.+++ ..+++.++-|...... .
T Consensus 86 ~~~~~~f~~~~~~~v~~~-~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~~~ls~a~~~~~~~~~-------~ 157 (210)
T cd00598 86 PASRAAFANSLVSFLKTY-GFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAANYLLTIAVPASYFDLG-------Y 157 (210)
T ss_pred HHHHHHHHHHHHHHHHHc-CCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccCcEEEEEecCChHHhh-------c
Confidence 344556666666666663 6999998665444332 11224578889999987 4666666655421111 0
Q ss_pred HHHHHHHhhcCceeEEecch
Q psy17297 185 ILSLSHLIETSDETFCIDNE 204 (456)
Q Consensus 185 ~lsl~~l~e~sd~~i~~~N~ 204 (456)
..-+..+.+++|.+.+.--|
T Consensus 158 ~~~~~~l~~~vD~v~vm~Yd 177 (210)
T cd00598 158 AYDVPAIGDYVDFVNVMTYD 177 (210)
T ss_pred cCCHHHHHhhCCEEEEeeec
Confidence 23467888999999987544
Done!