RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17297
(456 letters)
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B*
3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B*
1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B*
1sa0_B* 1sa1_B* ...
Length = 445
Score = 721 bits (1862), Expect = 0.0
Identities = 319/442 (72%), Positives = 378/442 (85%), Gaps = 1/442 (0%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 59
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y G SDLQLERI VYYNEA G Y+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV 60
Query: 60 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 119
PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 120 RREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVV 179
R+E+E+CDC+QGFQ+THSLGGGTGSGMGTLL++KIREEYPDR++N FSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180
Query: 180 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 239
EPYNA LS+ L+E +DET+ IDNEALYDIC R+LKL +P+Y DLNHLVSATM G+TTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 240 RFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMM 299
RFPGQLNADLRKLAVNMVPFPRLHFFM G APL S Y+A+++ ELTQ++FD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
Query: 300 VACDPRHGKYLTVATIFRGELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPKG 359
ACDPRHG+YLTVATIFRG +S+KE+D+ ++NI N N Y+VEWIPNN+KTA+CDI P+G
Sbjct: 301 AACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRG 360
Query: 360 FKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEAGANVEDLIC 419
KMS TFIGN+TAIQ LF+RI +QF +MFRRKAFLHWYT EGMDE EF EA +N+ DL+
Sbjct: 361 LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 420
Query: 420 EYQQYQEASIEDTVEIATSDDE 441
EYQQYQ+A+ ++ E + E
Sbjct: 421 EYQQYQDATADEQGEFEEEEGE 442
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex,
bacterial tubulin, cytoskeleton, polymerization,
verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter
dejongeii}
Length = 426
Score = 697 bits (1801), Expect = 0.0
Identities = 159/427 (37%), Positives = 249/427 (58%), Gaps = 7/427 (1%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRY-EGTSDLQLERIQVYYNEAQGG-Y 58
+REI+ I VGQCGNQ FW +EHGL E G EG++ ++V++++ + G Y
Sbjct: 1 VREILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAAANSNMEVFFHKVRDGKY 60
Query: 59 IPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDL 118
+PRA+LVDLEPG + + G ++F + + GAANNWA+G+ EG +++D +M++
Sbjct: 61 VPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMNV 120
Query: 119 TRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTV 178
E +QGF +THS+GGG+GSG+G+L+L ++R+ YP + I FSVVPSP +SD+
Sbjct: 121 IDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDSA 180
Query: 179 VEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTC 238
VEPYNAIL+L +++ +D +DNEAL+ I L + P+Y DLN++++ + +T
Sbjct: 181 VEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLNRS-PNYMDLNNIIALIVSSVTAS 239
Query: 239 LRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNM 298
LRFPG+LN DL + N+VPFP HF + AP+ + +L +E F N
Sbjct: 240 LRFPGKLNTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQEGQVRTNFPDLARETFAQDNF 299
Query: 299 MVACDPRHGKYLTVATIFRGELSVKEIDDHIVNIHNNNLPYYVEWIP--NNIKTALCDIA 356
A D + G YL + +FRG++ K++D+++ I + Y ++P +K + A
Sbjct: 300 TAAIDWQQGVYLAASALFRGDVKAKDVDENMATIRKSL--NYASYMPASGGLKLGYAETA 357
Query: 357 PKGFKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEAGANVED 416
P+GF SG + N T I +F+R++ QF MF A+ HWY G+ +A +
Sbjct: 358 PEGFASSGLALVNHTGIAAVFERLIAQFDIMFDNHAYTHWYENAGVSRDMMAKARNQIAT 417
Query: 417 LICEYQQ 423
L Y+
Sbjct: 418 LAQSYRD 424
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 697 bits (1800), Expect = 0.0
Identities = 150/454 (33%), Positives = 255/454 (56%), Gaps = 12/454 (2%)
Query: 2 REIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YIP 60
REI+ +Q+GQCGNQ G +FW+++ EHG++ E + +R V++ +A YIP
Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIP 62
Query: 61 RAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQ--SGAANNWAKGHYTEGVELVDAVMDL 118
RA+L+DLEP + ++ + PY K++ P+N + GA NNWA G +++G ++ + + D+
Sbjct: 63 RAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDI 121
Query: 119 TRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSP-KVSDT 177
REA+ D ++GF + HS+ GGTGSG+G+ LL ++ + YP +++ +SV P+ ++SD
Sbjct: 122 IDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDV 181
Query: 178 VVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITT 237
VV+PYN++L+L L + +D +DN AL I L + +PS+ +N LVS M TT
Sbjct: 182 VVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTT 241
Query: 238 CLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLI-DYKAMSIGELTQELFDAK 296
LR+PG +N DL L +++P PRLHF M+G PL + + + ++ ++ + L K
Sbjct: 242 TLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPK 301
Query: 297 NMMVACDPRHGK---YLTVATIFRGELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALC 353
N+MV+ Y+ + I +GE+ ++ + I L ++ W P +I+ AL
Sbjct: 302 NVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALS 361
Query: 354 DIAP---KGFKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEA 410
+P ++SG + N T+I LF+R Q+ + +R+AFL + E M + F E
Sbjct: 362 RKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEM 421
Query: 411 GANVEDLICEYQQYQEASIEDTVEIATSDDEKGD 444
+ E + +Y A+ D + T + D
Sbjct: 422 DTSREIVQQLIDEYHAATRPDYISWGTQEQVDVD 455
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 694 bits (1793), Expect = 0.0
Identities = 148/447 (33%), Positives = 236/447 (52%), Gaps = 8/447 (1%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYN---EAQGG 57
+ + + +GQ GNQ FW+ + EHG++ + +++ E+ G
Sbjct: 3 VNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSG 62
Query: 58 -YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVM 116
Y+PRAI+VDLEP +D V++ G +F P N + GA N+A G+ G E++ VM
Sbjct: 63 SYVPRAIMVDLEPSVIDNVKAT-SGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVM 121
Query: 117 DLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSD 176
E + CD + G V H++GGGTGSG G LL+ ++E+Y + + + +V+PSP+VS
Sbjct: 122 SRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSS 181
Query: 177 TVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGIT 236
V EPYN + +L+ L ++D DNEAL+D+ R + SP+ DLN L++ + GIT
Sbjct: 182 VVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGIT 241
Query: 237 TCLRFPGQLNAD--LRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFD 294
+RF G L + LR+L N+VP P LHF M APL P ++ + I E+ + LFD
Sbjct: 242 ASMRFSGFLTVEISLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFD 301
Query: 295 AKNMMVACDPRHGKYLTVATIFRGELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCD 354
++ AC P G++L+ A ++RG + K + D + L WIP K +
Sbjct: 302 NGSVFAACSPMEGRFLSTAVLYRGIMEDKPLADAALAAMREKL-PLTYWIPTAFKIGYVE 360
Query: 355 IAPKGFKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEAGANV 414
+ S + N T I + RI F +++RKAF +WY EGM E + + A+
Sbjct: 361 QPGISHRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINVLRASA 420
Query: 415 EDLICEYQQYQEASIEDTVEIATSDDE 441
++L+ YQ +E+ + V+ + D
Sbjct: 421 QELVQSYQVAEESGAKAKVQDSAGDTG 447
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A*
3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A*
3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A*
2wbe_A* 3dco_A* ...
Length = 451
Score = 689 bits (1780), Expect = 0.0
Identities = 171/442 (38%), Positives = 259/442 (58%), Gaps = 11/442 (2%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQ--LERIQVYYNEAQGG- 57
MRE + I VGQ G Q G WE EHG+ G+ + + +++E G
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 58 YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMD 117
++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V+D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 118 LTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDT 177
R+ A+ C +QGF V HS GGGTGSG +LL+ ++ +Y + FS+ P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 178 VVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITT 237
VVEPYN+IL+ +E SD F +DNEA+YDIC R+L + P+Y +LN L+S + IT
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 238 CLRFPGQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKN 297
LRF G LN DL + N+VP+PR+HF ++ AP++S ++ +S+ E+T F+ N
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 298 MMVACDPRHGKYLTVATIFRGELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAP 357
MV CDPRHGKY+ ++RG++ K+++ I I +V+W P K + P
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 358 K--------GFKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHE 409
+ + + NTTAI + R+ +F M+ ++AF+HWY EGM+E EF E
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 410 AGANVEDLICEYQQYQEASIED 431
A ++ L +Y++ S+E
Sbjct: 421 AREDMAALEKDYEEVGVDSVEG 442
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 2e-08
Identities = 80/464 (17%), Positives = 135/464 (29%), Gaps = 195/464 (42%)
Query: 10 GQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRA--ILVDL 67
GQ GN ++EE+ ++ Y+ T Y+ G I + L +L
Sbjct: 162 GQ-GNTD--DYFEEL-RD-------LYQ-T-----------YHVLVGDLIKFSAETLSEL 198
Query: 68 EPGTMDAVRSGPYGKMFRPDNFLHGQSGAANN---------------WAKGHYTEGVELV 112
T+DA + + + +L S + HY +V
Sbjct: 199 IRTTLDAEKV--FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY-----VV 251
Query: 113 DA-VMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTL---------------------- 149
A ++ T E + L G TG G +
Sbjct: 252 TAKLLGFTPGE-----------LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 150 -LLTKI--R--EEYPDRMINAFSV---------VPSP--KVSDTVVEPYNAILSLSHLIE 193
+L I R E YP+ + + VPSP +S+ L+ + +
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN---------LTQEQVQD 351
Query: 194 TSDETFCIDNEAL---YDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLR 250
++T N L + + SL N +LV + G L LN LR
Sbjct: 352 YVNKT----NSHLPAGKQVEI-SLV-NGA-----KNLV---VSGPPQSLY---GLNLTLR 394
Query: 251 KLAVNM------VPF----PRLHF-FMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMM 299
K +PF + F+ P+ SP F
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFL----PVASP-----------------F------ 427
Query: 300 VACDPRHGKYLTVATIFRGELSVKEIDDHIVNIHNNNL--PYY-------VEWIPNNIKT 350
H L A+ +L K++ + V+ + ++ P Y + + +I
Sbjct: 428 ------HSHLLVPAS----DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 351 ALCD-IA------PKGFKMSGTFI-----GNTTAIQGLFQRIMD 382
+ D I + T I G + + L R D
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Score = 42.3 bits (99), Expect = 3e-04
Identities = 46/294 (15%), Positives = 74/294 (25%), Gaps = 95/294 (32%)
Query: 25 SQEHGLNEMGR--YEGTSDLQ---LERIQVYYNEAQGGYIPRAILVDLEPGTMDAVRSGP 79
SQE G MG Y+ TS R ++ + G I +V P + G
Sbjct: 1626 SQEQG---MGMDLYK-TSKAAQDVWNRADNHFKDTYGFSILD--IVINNPVNLTIHFGGE 1679
Query: 80 YGKMFRPDNF---LHGQSGAANNWAKGHYTEGVELV--------DAVMDLTR-------- 120
GK R +N+ + + + E E ++ T+
Sbjct: 1680 KGKRIR-ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL 1738
Query: 121 ---------REA---ENCDCMQGFQVTHSLG-----GGTGSGMG---TLLLTKIREEYPD 160
+ G HSLG M + + R
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAG----HSLGEYAALASLADVMSIESLVEVVFYRGMTMQ 1794
Query: 161 RMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLK----- 215
+ + S + P S EAL + R K
Sbjct: 1795 VAVPRDELGRS-NYGMIAINPGRVAASF-------------SQEALQYVVERVGKRTGWL 1840
Query: 216 -----LNSPS--Y------RDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNM 256
N + Y R L+ + T L F D+ +L ++
Sbjct: 1841 VEIVNYNVENQQYVAAGDLRALDTV--------TNVLNFIKLQKIDIIELQKSL 1886
Score = 37.7 bits (87), Expect = 0.008
Identities = 47/223 (21%), Positives = 74/223 (33%), Gaps = 83/223 (37%)
Query: 23 EISQEHGLNEMGRYEGT-------SDLQLERIQVYYNEAQGGYIP--RAILVDLEPGTMD 73
E S E+ EG S+L E++Q Y N+ ++P + + + L G +
Sbjct: 325 EDSLENN-------EGVPSPMLSISNLTQEQVQDYVNKTNS-HLPAGKQVEISLVNGAKN 376
Query: 74 AVRSGP----YG------KMFRPDN------------------FL------HGQ--SGAA 97
V SGP YG K P FL H A+
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS 436
Query: 98 ---NNWAKGHYTE--GVELVDAV------MDLTRREAEN-----CDCM----------QG 131
N + ++ V DL R + + DC+
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL-RVLSGSISERIVDCIIRLPVKWETTTQ 495
Query: 132 FQVTHSL--GGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSP 172
F+ TH L G G SG+G L + ++ R+I A ++ +P
Sbjct: 496 FKATHILDFGPGGASGLGV-LTHRNKDGTGVRVIVAGTLDINP 537
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related,
rossmann fold, GTP bindi structural protein; 2.30A
{Clostridium botulinum C}
Length = 360
Score = 48.5 bits (115), Expect = 3e-06
Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 22/146 (15%)
Query: 108 GVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFS 167
++ + +CD ++ GG GSG+ +L ++ YP++
Sbjct: 71 AQTYYKQIIAQIMEKFSSCD---IVIFVATMAGGAGSGITPPILGLAKQMYPNKHFGFVG 127
Query: 168 VVPSPKVSDTVVEPYNAILSLSHLIETSDET-----FCIDNEALYDICVRSLKLNSPSYR 222
V+P ++ + E NAI + ++ +++E + +DN
Sbjct: 128 VLPKA--TEDIDEHMNAIACWNDIMRSTNEGKDISIYLLDNNKRE------------KES 173
Query: 223 DLNHLVSATMCGITTCLRFPGQLNAD 248
D+N + + D
Sbjct: 174 DINKEFATLFNDFMNMSESHAEGVVD 199
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.007
Identities = 42/387 (10%), Positives = 95/387 (24%), Gaps = 111/387 (28%)
Query: 115 VMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKV 174
V D+ + + ++ GTL L + M+ F V
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAV-------SGTLRLFWTLLSKQEEMVQKF-------V 83
Query: 175 SDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCG 234
+ + Y ++S E + +Y L ++ + N VS
Sbjct: 84 EEVLRINYKFLMSPIK-TEQRQPS---MMTRMYIEQRDRLYNDNQVFAKYN--VS----- 132
Query: 235 ITTCLRFPGQLNADLRKLAVNMVPFPRLHFF-M--SGNAPLVSPSLIDYKAMSIGELTQE 291
R Q LR+ + + P + + SG + + YK Q
Sbjct: 133 -----RL--QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK-------VQC 178
Query: 292 LFDAKNMMVACDPRHGKYLTVATIFRGELSVKEIDDHIVNI---------HNNNLPYYVE 342
+L + E ++ + + I H++N+ +
Sbjct: 179 KM----------DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 343 WIPNNIKTALCDIAPKGFKMS-------------GTFIGN-----TTAIQGLFQRI---- 380
I ++ L K ++ F + TT + + +
Sbjct: 229 SIQAELRRLLKS---KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 381 MDQFCSMFRRKAFLHWYTVE------GMDEFEF-HEA-----------GANVEDLICEYQ 422
+ E ++ D + +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 423 QYQ-------EASIEDTVEIATSDDEK 442
++ IE ++ + + +
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYR 372
Score = 28.7 bits (63), Expect = 4.9
Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 24/108 (22%)
Query: 278 IDYKAMSIGELTQELFDAKNMMVACDPRHGKYLTVATIFRGELSVKEIDDHIVNI-HNNN 336
Y+ I + ++ F N D + V + + LS +EI DHI+ +
Sbjct: 14 HQYQYKDILSVFEDAF-VDNF----DCKD-----VQDMPKSILSKEEI-DHIIMSKDAVS 62
Query: 337 LPYYVEWIPNNIKTALCDIAPKGFKMSGTFIGNTTAIQGLFQRIMDQF 384
+ W L K +M F+ ++ ++ +M
Sbjct: 63 GTLRLFWT-------LLS---KQEEMVQKFVE--EVLRINYKFLMSPI 98
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 36.8 bits (84), Expect = 0.012
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 132 FQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHL 191
F + GGG G+G G+L+L IRE++ ++ +PS + NA++ LS +
Sbjct: 151 FLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEI----NNALVLLSEI 206
Query: 192 IETSDETFCIDNEALY 207
E E + +
Sbjct: 207 DEFMREQDRLFGNSDI 222
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid
segregation; HET: GDP; 1.90A {Bacillus cereus} PDB:
4ei8_A 4ei9_A*
Length = 389
Score = 36.6 bits (84), Expect = 0.013
Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 15/147 (10%)
Query: 110 ELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVV 169
+ + + ++E E+ D +T LGGGTG+G + + E N ++
Sbjct: 96 KHETKIFEAVKQEFEDRD-F--IWITCGLGGGTGTGALLKAIEMLYEHD----YNFGLLL 148
Query: 170 PSPKVSDTVVEPYNAILSLSHLIETSDETFC---IDNEALYDICVRSLKLNSPS--YRDL 224
P+ ++ + NA + + + IDN LY +
Sbjct: 149 TLPRDAEALKVLENATSRIRSIAMNQEAFGSIVLIDNAKLYRKFEEENPSALANEYTSYS 208
Query: 225 NHLVS---ATMCGITTCLRFPGQLNAD 248
N ++ + +T+ + D
Sbjct: 209 NKYIADALHEINLVTSSFTPFSDTHFD 235
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1
PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Length = 214
Score = 33.3 bits (76), Expect = 0.092
Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 12/119 (10%)
Query: 150 LLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDI 209
+ I +E P+ ++ A +V+ +P+ V E L E L
Sbjct: 57 AIRAIAKEVPEAIVGAGTVL-NPQQLAEVTEAGAQFAISPGL-----------TEPLLKA 104
Query: 210 CVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSG 268
P ++ L+ G+ FP + N ++ L PF ++ F +G
Sbjct: 105 ATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCPTG 163
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET:
GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A*
Length = 315
Score = 31.0 bits (69), Expect = 0.85
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 134 VTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIE 193
V +SLGGG+GS +G L+ ++ DR + S V S + N I ++ L
Sbjct: 86 VCYSLGGGSGSVLGPLITGQL----ADRKASFVSFVVGAMESTDNLG--NDIDTMKTLEA 139
Query: 194 TSDET 198
+
Sbjct: 140 IAVNK 144
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP:
a.6.1.6
Length = 49
Score = 27.3 bits (61), Expect = 1.4
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 409 EAGANVEDLICEYQQYQEASIEDTVEIATSDDEK 442
E +VE L+ QQ+ +A I + + + S EK
Sbjct: 11 ERQTSVERLV---QQFADAGIRKSADDSVSAQEK 41
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four
helix bundle, hydrolase/hydrolase inhibitor complex;
1.90A {Actinidia chinensis}
Length = 153
Score = 29.2 bits (65), Expect = 1.5
Identities = 21/96 (21%), Positives = 28/96 (29%), Gaps = 16/96 (16%)
Query: 176 DTVVEPYNAILSLSHLIETSDETFCIDN-EALYDICVRSLK-----LNSPSYRDLNHLVS 229
+ + I SL++ + Y + SL L S Y LN S
Sbjct: 47 ASAKQTSKIIASLTNQATDPKLKGRYETCSENYADAIDSLGQAKQFLTSGDYNSLNIYAS 106
Query: 230 ATMCGITTCLR-FPG---------QLNADLRKLAVN 255
A G TC F G Q + L L
Sbjct: 107 AAFDGAGTCEDSFEGPPNIPTQLHQADLKLEDLCDI 142
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function;
HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Length = 224
Score = 29.8 bits (67), Expect = 1.6
Identities = 17/119 (14%), Positives = 40/119 (33%), Gaps = 12/119 (10%)
Query: 150 LLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDI 209
+ +R PD +I A +V+ + + + N + +
Sbjct: 58 AIRLLRANRPDFLIAAGTVL-TAEQVVLAKSSGADFVVTPG-----------LNPKIVKL 105
Query: 210 CVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSG 268
C +P + + A GI+ FP + + ++ + + P+ +L +G
Sbjct: 106 CQDLNFPITPGVNNPMAIEIALEMGISAVKFFPAEASGGVKMIKALLGPYAQLQIMPTG 164
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase;
1.64A {Vibrionales bacterium swat-3}
Length = 232
Score = 29.8 bits (67), Expect = 1.6
Identities = 16/119 (13%), Positives = 41/119 (34%), Gaps = 12/119 (10%)
Query: 150 LLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDI 209
+ +R+ P+ +I A +++ + + + E + N
Sbjct: 75 AIRLLRQAQPEMLIGAGTIL-NGEQALAAKEAGATFVVSPGF-----------NPNTVRA 122
Query: 210 CVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSG 268
C P + + + +A G+TT FP + + + + + P+ + +G
Sbjct: 123 CQEIGIDIVPGVNNPSTVEAALEMGLTTLKFFPAEASGGISMVKSLVGPYGDIRLMPTG 181
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown
function, aldolase superfamily, class I aldolase, KDPG
aldolase domain; 1.84A {Oleispira antarctica} PDB:
3vcr_A
Length = 217
Score = 29.4 bits (66), Expect = 2.0
Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 6/119 (5%)
Query: 150 LLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDI 209
++ I++ P+ ++ A +V + ++ + L I+ +
Sbjct: 54 AISAIKKAVPEAIVGAGTVC-TADDFQKAIDAGAQFIVSPGLTP-----ELIEKAKQVKL 107
Query: 210 CVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSG 268
+ + P + ++ A GIT FP + L PFP + F +G
Sbjct: 108 DGQWQGVFLPGVATASEVMIAAQAGITQLKCFPASAIGGAKLLKAWSGPFPDIQFCPTG 166
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural
genomics, structural genomics consortium; 2.20A
{Plasmodium knowlesi} PDB: 3fi8_A*
Length = 369
Score = 29.5 bits (65), Expect = 2.2
Identities = 16/124 (12%), Positives = 40/124 (32%), Gaps = 14/124 (11%)
Query: 319 ELSVKEIDDHIVNIHNNNLPYYVEWIPNNI-----KTALCDI-----APKGFKMSGTF-- 366
+ ++ N+ N + + + NNI L D ++ F
Sbjct: 195 FIKFMKVYSKSDNLANTIVFCHNDLQENNIINTNKCLRLIDFEYSGFNFLATDIANFFIE 254
Query: 367 --IGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQY 424
I + + F+ ++ S RK F+ Y +D+ +++++ +
Sbjct: 255 TSIDYSVSSYPFFEIDKKKYISYENRKLFITAYLSNYLDKSLVVPTPKLIDEILEAVEVQ 314
Query: 425 QEAS 428
+
Sbjct: 315 ALGA 318
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate,
beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Length = 225
Score = 29.1 bits (65), Expect = 2.3
Identities = 17/119 (14%), Positives = 39/119 (32%), Gaps = 12/119 (10%)
Query: 150 LLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDI 209
+ +RE+ P+ + A +V+ + V + + E + +
Sbjct: 67 AIQVLREQRPELCVGAGTVL-DRSMFAAVEAAGAQFVVTPGI-----------TEDILEA 114
Query: 210 CVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRLHFFMSG 268
V S P + ++ G FP +++ + + PF + F +G
Sbjct: 115 GVDSEIPLLPGISTPSEIMMGYALGYRRFKLFPAEISGGVAAIKAFGGPFGDIRFCPTG 173
>1x91_A Invertase/pectin methylesterase inhibitor family protein;
four-helix bundle, alpha hairpin, disulfide bridge,
domain- swapping, linker; 1.50A {Arabidopsis thaliana}
SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Length = 153
Score = 27.6 bits (61), Expect = 5.0
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 182 YNAILSLSHLIETSDETFCIDN-EALYDICVRSLK-----LNSPSYRDLNHLVSATMCGI 235
+ S+ + Y+ + +L+ L S +N VSA + G
Sbjct: 53 LKKLQSIIDGGVDPRSKLAYRSCVDEYESAIGNLEEAFEHLASGDGMGMNMKVSAALDGA 112
Query: 236 TTCL 239
TCL
Sbjct: 113 DTCL 116
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 28.7 bits (64), Expect = 5.6
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 19/110 (17%)
Query: 3 EIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGGYIPRA 62
E H GN+ ++ W +++ + GL + ++
Sbjct: 302 EYFH---QYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKT--VTTRLSHVDLLRSVQ 356
Query: 63 ILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELV 112
L D S P RP++++ + N + Y +G E++
Sbjct: 357 FLED----------SSPLSHPIRPESYVSME----NFYTTTVYDKGSEVM 392
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, MGA family; 2.31A
{Enterococcus faecalis}
Length = 485
Score = 28.3 bits (63), Expect = 6.4
Identities = 7/63 (11%), Positives = 17/63 (26%), Gaps = 2/63 (3%)
Query: 141 GTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFC 200
L ++ R+ + ++S + + I+S L F
Sbjct: 406 QGEPAWKAFLQQELAAYLGTRVK--LQAIEYVELSQLTLNEADIIISNFPLDHLDLPVFY 463
Query: 201 IDN 203
+
Sbjct: 464 LSL 466
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 28.3 bits (63), Expect = 7.1
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 15/71 (21%)
Query: 112 VDAVMD--LTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVV 169
V+A + +T E + +V G +GSGMG ++ +R + DR
Sbjct: 1021 VEAFIASGITD-PYEMYKYVHVSEV----GNCSGSGMGG--VSALRGMFKDRF------K 1067
Query: 170 PSPKVSDTVVE 180
P +D + E
Sbjct: 1068 DEPVQNDILQE 1078
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 27.7 bits (62), Expect = 9.9
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 61 RAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWA 101
RA+L+DL G A PY + + WA
Sbjct: 18 RAVLIDLSNGQELADHVTPYRHGVIDQYLPNTNIKLGHEWA 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.413
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,153,252
Number of extensions: 437252
Number of successful extensions: 908
Number of sequences better than 10.0: 1
Number of HSP's gapped: 884
Number of HSP's successfully gapped: 28
Length of query: 456
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 359
Effective length of database: 3,993,456
Effective search space: 1433650704
Effective search space used: 1433650704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.0 bits)