RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17297
(456 letters)
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 243
Score = 361 bits (929), Expect = e-125
Identities = 188/243 (77%), Positives = 216/243 (88%), Gaps = 1/243 (0%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNEAQGG-YI 59
MREIVHIQ GQCGNQ G KFWE IS EHG++ G Y G SDLQLERI VYYNEA G Y+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV 60
Query: 60 PRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMDLT 119
PRAILVDLEPGTMD+VRSGP+G++FRPDNF+ GQSGA NNWAKGHYTEG ELVD+V+D+
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 120 RREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDTVV 179
R+E+E+CDC+QGFQ+THSLGGGTGSGMGTLL++KIREEYPDR++N FSVVPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180
Query: 180 EPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCL 239
EPYNA LS+ L+E +DET+CIDNEALYDIC R+LKL +P+Y DLNHLVSATM G+TTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240
Query: 240 RFP 242
RFP
Sbjct: 241 RFP 243
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 245
Score = 332 bits (852), Expect = e-113
Identities = 105/244 (43%), Positives = 151/244 (61%), Gaps = 3/244 (1%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQL--ERIQVYYNEAQGG- 57
MRE + I VGQ G Q G WE EHG+ G+ + + +++E G
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 58 YIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVMD 117
++PRA+ VDLEP +D VR+G Y ++F P+ + G+ AANN+A+GHYT G E++D V+D
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 118 LTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSDT 177
R+ A+ C +QGF V HS GGGTGSG +LL+ ++ +Y + FS+ P+P+VS
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 178 VVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGITT 237
VVEPYN+IL+ +E SD F +DNEA+YDIC R+L + P+Y +LN L+ + IT
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 238 CLRF 241
LRF
Sbjct: 241 SLRF 244
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 244
Score = 317 bits (813), Expect = e-108
Identities = 86/245 (35%), Positives = 138/245 (56%), Gaps = 5/245 (2%)
Query: 1 MREIVHIQVGQCGNQTGVKFWEEISQEHGLNEMGRYEGTSDLQLERIQVYYNE----AQG 56
+ + + +GQ GNQ FW+ + EHG++ + ++++ + G
Sbjct: 1 VNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSFFSKLGESSSG 60
Query: 57 GYIPRAILVDLEPGTMDAVRSGPYGKMFRPDNFLHGQSGAANNWAKGHYTEGVELVDAVM 116
Y+PRAI+VDLEP +D V++ G +F P N + GA N+A G+ G E++ VM
Sbjct: 61 SYVPRAIMVDLEPSVIDNVKA-TSGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVM 119
Query: 117 DLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSVVPSPKVSD 176
E + CD + G V H++GGGTGSG G LL+ ++E+Y + + + +V+PSP+VS
Sbjct: 120 SRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSS 179
Query: 177 TVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLVSATMCGIT 236
V EPYN + +L+ L ++D DNEAL+D+ R + SP+ DLN L++ + GIT
Sbjct: 180 VVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGIT 239
Query: 237 TCLRF 241
+RF
Sbjct: 240 ASMRF 244
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 184
Score = 246 bits (629), Expect = 6e-81
Identities = 128/184 (69%), Positives = 155/184 (84%)
Query: 243 GQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVAC 302
GQLNADLRKLAVNMVPFPRLHFFM G APL S Y+A+++ ELTQ++FDAKNMM AC
Sbjct: 1 GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAAC 60
Query: 303 DPRHGKYLTVATIFRGELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPKGFKM 362
DPRHG+YLTVA +FRG +S+KE+D+ ++N+ N N Y+VEWIPNN+KTA+CDI P+G KM
Sbjct: 61 DPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKM 120
Query: 363 SGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQ 422
S TFIGN+TAIQ LF+RI +QF +MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQ
Sbjct: 121 SATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 180
Query: 423 QYQE 426
QYQ+
Sbjct: 181 QYQD 184
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 195
Score = 236 bits (604), Expect = 4e-77
Identities = 64/195 (32%), Positives = 105/195 (53%), Gaps = 8/195 (4%)
Query: 243 GQLNADLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVAC 302
G LN DL + N+VP+PR HF ++ AP++S ++ +S+ E+T F+ N MV C
Sbjct: 1 GALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC 60
Query: 303 DPRHGKYLTVATIFRGELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAP----- 357
DPRHGKY+ ++RG++ K+++ I I +V+W P K + P
Sbjct: 61 DPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPG 120
Query: 358 ---KGFKMSGTFIGNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEAGANV 414
+ + + NTTAI + R+ +F M+ ++AF+HWY EGM+E EF EA ++
Sbjct: 121 GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 180
Query: 415 EDLICEYQQYQEASI 429
L +Y++ S+
Sbjct: 181 AALEKDYEEVGVDSV 195
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 180
Score = 224 bits (572), Expect = 2e-72
Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 1/179 (0%)
Query: 248 DLRKLAVNMVPFPRLHFFMSGNAPLVSPSLIDYKAMSIGELTQELFDAKNMMVACDPRHG 307
LR+L N+VP P LHF M APL P ++ + I E+ + LFD ++ AC P G
Sbjct: 3 SLRELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDNGSVFAACSPMEG 62
Query: 308 KYLTVATIFRGELSVKEIDDHIVNIHNNNLPYYVEWIPNNIKTALCDIAPKGFKMSGTFI 367
++L+ A ++RG + K + D + L WIP K + + S +
Sbjct: 63 RFLSTAVLYRGIMEDKPLADAALAAMREKL-PLTYWIPTAFKIGYVEQPGISHRKSMVLL 121
Query: 368 GNTTAIQGLFQRIMDQFCSMFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQE 426
N T I + RI F +++RKAF +WY EGM E + + A+ ++L+ YQ +E
Sbjct: 122 ANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINVLRASAQELVQSYQVAEE 180
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 198
Score = 41.8 bits (98), Expect = 6e-05
Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 8/146 (5%)
Query: 101 AKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPD 160
A + G + + E D + +T +GGGTG+G ++ +E
Sbjct: 61 AGANPEVGRQAALEDRERISEVLEGADMVF---ITTGMGGGTGTGAAPIIAEVAKEMG-- 115
Query: 161 RMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPS 220
I +VV P + A + L E+ D I NE L I + L + +
Sbjct: 116 --ILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLLA-A 172
Query: 221 YRDLNHLVSATMCGITTCLRFPGQLN 246
+ + +++ + GI+ ++ PG +N
Sbjct: 173 FAKADDVLAGAVRGISDIIKRPGMIN 198
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga
maritima [TaxId: 2336]}
Length = 194
Score = 37.6 bits (87), Expect = 0.001
Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 6/135 (4%)
Query: 110 ELVDAVMDLTRREAEN-CDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPDRMINAFSV 168
E+ + + + +T GGGTG+G ++ +E I ++
Sbjct: 65 EIGEQAALESEEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMG----ILTVAI 120
Query: 169 VPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDICVRSLKLNSPSYRDLNHLV 228
V +P + AI L L + D I N L + R +K+ ++ + +
Sbjct: 121 VTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNKLMEELPRDVKIKD-AFLKADETL 179
Query: 229 SATMCGITTCLRFPG 243
+ GI+ + G
Sbjct: 180 HQGVKGISELITKRG 194
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 36.4 bits (84), Expect = 0.003
Identities = 31/159 (19%), Positives = 58/159 (36%), Gaps = 7/159 (4%)
Query: 93 QSGAANNWAKGHYTEGVELVDAVMDLTRREAENC-----DCMQGFQVTHSLGGGTGSGMG 147
S A G + A ++ R+ AE+ + ++G + + G G G G
Sbjct: 42 MSDADVKLDVGRDSTRGLGAGADPEVGRKAAEDAKDEIEELLRGADMVF-VTAGEGGGTG 100
Query: 148 TLLLTKIREEYPDRMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALY 207
T + VV P + A ++ L E+ D I N+ L
Sbjct: 101 TGGAPVVASIARKLGALTVGVVTRPFSFEGKRRSNQAENGIAALRESCDTLIVIPNDRLL 160
Query: 208 DICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLN 246
+ ++ L ++R + ++ + GIT + PG +N
Sbjct: 161 QMGDAAVSLMD-AFRSADEVLLNGVQGITDLITTPGLIN 198
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 209
Score = 34.1 bits (78), Expect = 0.017
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Query: 101 AKGHYTEGVELVDAVMDLTRREAENCDCMQGFQVTHSLGGGTGSGMGTLLLTKIREEYPD 160
A G+ G E + + ++ D +T LGGGTG+G ++ ++
Sbjct: 75 AGGNPKIGEEAAKESAEEIKAAIQDSDM---VFITCGLGGGTGTGSAPVVAEISKKIG-- 129
Query: 161 RMINAFSVVPSPKVSDTVVEPYNAILSLSHLIETSDETFCIDNEALYDI 209
+VV P V + V NA+ L L + +D I NE L++I
Sbjct: 130 --ALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEI 176
>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId:
303]}
Length = 216
Score = 28.8 bits (64), Expect = 1.0
Identities = 11/70 (15%), Positives = 23/70 (32%)
Query: 203 NEALYDICVRSLKLNSPSYRDLNHLVSATMCGITTCLRFPGQLNADLRKLAVNMVPFPRL 262
E + + V S P + ++ G FP +++ + + PF +
Sbjct: 99 TEDILEAGVDSEIPLLPGISTPSEIMMGYALGYRRFKLFPAEISGGVAAIKAFGGPFGDI 158
Query: 263 HFFMSGNAPL 272
F +G
Sbjct: 159 RFCPTGGVNP 168
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 149
Score = 26.9 bits (59), Expect = 3.0
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 200 CIDNEALYDICVRSLK-----LNSPSYRDLNHLVSATMCGITTC---LRFPGQLNADLRK 251
C+D Y+ + +L+ L S +N VSA + G TC ++ +++ +
Sbjct: 71 CVD---EYESAIGNLEEAFEHLASGDGMGMNMKVSAALDGADTCLDDVKRLRSVDSSVVN 127
Query: 252 LAVNM 256
+ +
Sbjct: 128 NSKTI 132
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT)
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 186
Score = 27.1 bits (59), Expect = 3.9
Identities = 18/125 (14%), Positives = 33/125 (26%), Gaps = 21/125 (16%)
Query: 331 NIHNNNLPYYVEWIPNNIKTALCDIAPKGFKMSGTFIGNTTAIQGLFQRIMDQFCSMFRR 390
N+ + L V + + ALC I + G G I + + + +
Sbjct: 74 NLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRII-- 131
Query: 391 KAFLHWYTVEGMDEF--EFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGDHRIK 448
+ +E E + G +V + IA +
Sbjct: 132 ---VTAILLETKFEAMECLRDLGFDVNIT--------------ELNIARGRALDRGTMMV 174
Query: 449 PEKPV 453
PV
Sbjct: 175 SRNPV 179
>d1gpja1 a.151.1.1 (A:303-404) Glutamyl tRNA-reductase dimerization
domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Length = 102
Score = 25.2 bits (55), Expect = 7.2
Identities = 7/47 (14%), Positives = 14/47 (29%)
Query: 400 EGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGDHR 446
E + E L+ + + + +E A + GD
Sbjct: 11 EELSTVEEELEKLKERRLVADVAKSLHEIKDRELERALRRLKTGDPE 57
>d1luaa2 c.58.1.4 (A:2-97) Methylene-tetrahydromethanopterin
dehydrogenase {Methylobacterium extorquens [TaxId: 408]}
Length = 96
Score = 25.0 bits (55), Expect = 8.4
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 356 APKGFKMSGTFIG--NTTAIQGLFQRIMDQFCSMFRRKAFL 394
K + + F+G + A + +F+ + +F FR L
Sbjct: 53 GGKEKQSTAIFVGGGDMAAGERVFEAVKKRFFGPFRVSCML 93
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.413
Gapped
Lambda K H
0.267 0.0583 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,745,005
Number of extensions: 81838
Number of successful extensions: 281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 24
Length of query: 456
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 368
Effective length of database: 1,199,356
Effective search space: 441363008
Effective search space used: 441363008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)