BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy173
(130 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P2N2|RHG28_HUMAN Rho GTPase-activating protein 28 OS=Homo sapiens GN=ARHGAP28 PE=1
SV=3
Length = 729
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 11 FQDYWNEYRILQETKRLDEFLDEQEEAARQLEDEGEQEAEWLSTAGLSQLSDAYRSGLEI 70
+D+W E ++++ + +E A DEGE EAEWL GLS L SG E
Sbjct: 78 MEDFWREIESIKDSSMGGQ--EEPPPAEVTPVDEGELEAEWLQDVGLSTLI----SGDE- 130
Query: 71 PDADLSRALRHLSSHQAQAVRRRVLSLNHTLRQRGARQLRPKNRKPDIRHVF 122
+ D L L+ QA AV++R + T+R++ + +R D+R +F
Sbjct: 131 -EEDGKALLSTLTRTQAAAVQKRYHTYTQTMRKKDKQSIR------DVRDIF 175
>sp|Q8BN58|RHG28_MOUSE Rho GTPase-activating protein 28 OS=Mus musculus GN=Arhgap28 PE=1
SV=1
Length = 729
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 43 DEGEQEAEWLSTAGLSQLSDAYRSGLEIPDADLSRALRHLSSHQAQAVRRRVLSLNHTLR 102
DEGE EAEWL GLS L SG E + D L L+ QA AV++R + TLR
Sbjct: 113 DEGELEAEWLQDVGLSTLI----SGNE--EEDGKALLSTLTRTQAAAVKKRYNTYTQTLR 166
Query: 103 QRGARQLRPKNRKPDIRHVF 122
++ + +R D+R +F
Sbjct: 167 KKNKQPVR------DVRDIF 180
>sp|Q8K0Q5|RHG18_MOUSE Rho GTPase-activating protein 18 OS=Mus musculus GN=Arhgap18 PE=2
SV=1
Length = 663
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 15/119 (12%)
Query: 6 SQDQDFQDYWNEYRILQETKRLDEFLDEQEEA-ARQLEDEGEQEAEWLSTAGLSQLSDAY 64
S D+ + YW E L+ KR +E E +EA + DEGE E EWL AGLS L +
Sbjct: 68 SLDESMEAYWTE---LENIKRSNENRQEGQEAIVVKEPDEGELEEEWLKEAGLSNL---F 121
Query: 65 RSGLEIPDADLSRALRHLSSHQAQAVRRRVLSLNHTLRQRGAR-QLRPKNRKPDIRHVF 122
++ P + L L+ QA AV++RV +++ TLR++ + +R D+R +F
Sbjct: 122 GESIDDPQESI-LFLSTLTRTQAAAVQKRVETVSQTLRKKNKQHHIR------DVRDIF 173
>sp|Q8N392|RHG18_HUMAN Rho GTPase-activating protein 18 OS=Homo sapiens GN=ARHGAP18 PE=1
SV=3
Length = 663
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 17/123 (13%)
Query: 5 VSQDQ----DFQDYWNEYRILQETKRLDEFLDE-QEEAARQLEDEGEQEAEWLSTAGLSQ 59
+SQD +DYW E L+ K+ E E QE + DEGE E EWL AGLS
Sbjct: 65 ISQDSLDELSMEDYWIE---LENIKKSSENSQEDQEVVVVKEPDEGELEEEWLKEAGLSN 121
Query: 60 LSDAYRSGLEIPDADLSRALRHLSSHQAQAVRRRVLSLNHTLRQRGARQLRPKNRKPDIR 119
L + P + L L+ QA AV++RV +++ TLR++ + + PD+R
Sbjct: 122 L---FGESAGDPQESIV-FLSTLTRTQAAAVQKRVETVSQTLRKKNKQY-----QIPDVR 172
Query: 120 HVF 122
+F
Sbjct: 173 DIF 175
>sp|P94527|G1PDH_BACSU Glycerol-1-phosphate dehydrogenase [NAD(P)+] OS=Bacillus subtilis
(strain 168) GN=egsA PE=1 SV=1
Length = 394
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 16 NEYRILQETKRLDEFLDEQEEA---ARQLEDEGEQEAEWLSTAGLSQLSDAYRSGLEIPD 72
+ YR L + L+EF + EA A Q GE A+WL +AG AY + +
Sbjct: 303 DTYRKLAQDDGLNEFSPSRREAIQSAYQTLPRGEVLADWLRSAG----GPAYFDEIGVGQ 358
Query: 73 ADLSRALRHLSSHQAQAVRRRVLSLNHTLRQRG 105
+ A RH + + + R+++ N TL G
Sbjct: 359 DSVKNAFRHAHTLRDRCTGLRIINENKTLINHG 391
>sp|Q49SH1|NCKX5_DANRE Sodium/potassium/calcium exchanger 5 OS=Danio rerio GN=slc24a5 PE=2
SV=1
Length = 513
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 52 LSTAGLSQLSDAYRSGLEIPDADLSRALRHLS 83
LS GL+++SD ++S +PD DL R L LS
Sbjct: 293 LSLHGLNEISDEHKSVFSMPDHDLKRILWVLS 324
>sp|Q8Z533|MEND_SALTI 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Salmonella typhi GN=menD PE=3 SV=1
Length = 556
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 9 QDFQDYW-NEYRILQETKRL------DEFLDEQEE----AARQLEDEGEQEAEWLSTAGL 57
Q D+W +E L+E +RL D F Q+ A R +EG++ A+W T G
Sbjct: 187 QRLGDWWQDEKPWLREARRLASDKQRDWFFWRQKRGVVVAGRMSAEEGKKVAQWAQTLGW 246
Query: 58 SQLSDAY-RSGLEIPDADL 75
+ D ++G +P ADL
Sbjct: 247 PLIGDVLSQTGQPLPCADL 265
>sp|B5BCN6|MEND_SALPK 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Salmonella paratyphi A (strain AKU_12601)
GN=menD PE=3 SV=1
Length = 556
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 9 QDFQDYW-NEYRILQETKRL------DEFLDEQEE----AARQLEDEGEQEAEWLSTAGL 57
Q D+W +E L+E +RL D F Q+ A R +EG++ A+W T G
Sbjct: 187 QRLGDWWQDEKPWLREARRLASDKQRDWFFWRQKRGVVVAGRMSAEEGKKVAQWAQTLGW 246
Query: 58 SQLSDAY-RSGLEIPDADL 75
+ D ++G +P ADL
Sbjct: 247 PLIGDVLSQTGQPLPCADL 265
>sp|Q5PN76|MEND_SALPA 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Salmonella paratyphi A (strain ATCC 9150 /
SARB42) GN=menD PE=3 SV=1
Length = 556
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 9 QDFQDYW-NEYRILQETKRL------DEFLDEQEE----AARQLEDEGEQEAEWLSTAGL 57
Q D+W +E L+E +RL D F Q+ A R +EG++ A+W T G
Sbjct: 187 QRLGDWWQDEKPWLREARRLASDKQRDWFFWRQKRGVVVAGRMSAEEGKKVAQWAQTLGW 246
Query: 58 SQLSDAY-RSGLEIPDADL 75
+ D ++G +P ADL
Sbjct: 247 PLIGDVLSQTGQPLPCADL 265
>sp|Q57M47|MEND_SALCH 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Salmonella choleraesuis (strain SC-B67)
GN=menD PE=3 SV=1
Length = 556
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 9 QDFQDYWNEYRILQETKRLDEFLDEQEE----AARQLEDEGEQEAEWLSTAGLSQLSDAY 64
QD + + E R L+ K+ D F Q+ A R +EG++ A+W T G + D
Sbjct: 194 QDEKPWLREARRLESDKQRDWFFWRQKRGVVVAGRMSAEEGKKVAQWAQTLGWPLIGDVL 253
Query: 65 -RSGLEIPDADL 75
++G +P ADL
Sbjct: 254 SQTGQPLPCADL 265
>sp|Q8ZNE8|MEND_SALTY 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=menD PE=3 SV=1
Length = 556
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 9 QDFQDYWNEYRILQETKRLDEFLDEQEE----AARQLEDEGEQEAEWLSTAGLSQLSDAY 64
QD + + E R L+ K+ D F Q+ A R +EG++ A+W T G + D
Sbjct: 194 QDEKPWLREARRLESDKQRDWFFWRQKRGVVVAGRMSAEEGKKVAQWAQTLGWPLIGDVL 253
Query: 65 -RSGLEIPDADL 75
++G +P ADL
Sbjct: 254 SQTGQPLPCADL 265
>sp|C0Q059|MEND_SALPC 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Salmonella paratyphi C (strain RKS4594)
GN=menD PE=3 SV=1
Length = 556
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 9 QDFQDYWNEYRILQETKRLDEFLDEQEE----AARQLEDEGEQEAEWLSTAGLSQLSDAY 64
QD + + E R L+ K+ D F Q+ A R +EG++ A+W T G + D
Sbjct: 194 QDEKPWLREARRLESDKQRDWFFWRQKRGVVVAGRMSAEEGKKVAQWAQTLGWPLIGDVL 253
Query: 65 -RSGLEIPDADL 75
++G +P ADL
Sbjct: 254 SQTGQPLPCADL 265
>sp|B4SYY1|MEND_SALNS 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Salmonella newport (strain SL254) GN=menD
PE=3 SV=1
Length = 556
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 9 QDFQDYWNEYRILQETKRLDEFLDEQEE----AARQLEDEGEQEAEWLSTAGLSQLSDAY 64
QD + + E R L+ K+ D F Q+ A R +EG++ A+W T G + D
Sbjct: 194 QDEKPWLREARRLESDKQRDWFFWRQKRGVVVAGRMSAEEGKKVAQWAQTLGWPLIGDVL 253
Query: 65 -RSGLEIPDADL 75
++G +P ADL
Sbjct: 254 SQTGQPLPCADL 265
>sp|B5R2Z0|MEND_SALEP 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Salmonella enteritidis PT4 (strain P125109)
GN=menD PE=3 SV=1
Length = 556
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 9 QDFQDYWNEYRILQETKRLDEFLDEQEE----AARQLEDEGEQEAEWLSTAGLSQLSDAY 64
QD + + E R L+ K+ D F Q+ A R +EG++ A+W T G + D
Sbjct: 194 QDEKPWLREARRLESDKQRDWFFWRQKRGVVVAGRMSAEEGKKVAQWAQTLGWPLIGDVL 253
Query: 65 -RSGLEIPDADL 75
++G +P ADL
Sbjct: 254 SQTGQPLPCADL 265
>sp|A9N5A2|MEND_SALPB 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Salmonella paratyphi B (strain ATCC BAA-1250
/ SPB7) GN=menD PE=3 SV=1
Length = 556
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 9 QDFQDYW-NEYRILQETKRL------DEFLDEQEE----AARQLEDEGEQEAEWLSTAGL 57
Q D+W +E L+E +RL D F Q+ A R +EG++ A+W T G
Sbjct: 187 QRLGDWWQDEKPWLREARRLASDKQRDWFFWRQKRGVVVAGRMSAEEGKKVAQWAQTLGW 246
Query: 58 SQLSDAY-RSGLEIPDADL 75
+ D ++G +P ADL
Sbjct: 247 PLIGDVLSQTGQPLPCADL 265
>sp|B5FPE8|MEND_SALDC 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Salmonella dublin (strain CT_02021853)
GN=menD PE=3 SV=1
Length = 556
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 9 QDFQDYW-NEYRILQETKRL------DEFLDEQEE----AARQLEDEGEQEAEWLSTAGL 57
Q D+W +E L+E +RL D F Q+ A R +EG++ A+W T G
Sbjct: 187 QRLGDWWQDEKPWLREARRLASDKQRDWFFWRQKRGVVVAGRMSAEEGKKVAQWAQTLGW 246
Query: 58 SQLSDAY-RSGLEIPDADL 75
+ D ++G +P ADL
Sbjct: 247 PLIGDVLSQTGQPLPCADL 265
>sp|B4TPJ2|MEND_SALSV 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Salmonella schwarzengrund (strain CVM19633)
GN=menD PE=3 SV=1
Length = 556
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 9 QDFQDYW-NEYRILQETKRL------DEFLDEQEE----AARQLEDEGEQEAEWLSTAGL 57
Q D+W +E L+E +RL D F Q+ A R +EG++ A+W T G
Sbjct: 187 QRLGDWWQDEKPWLREARRLASDKQRDWFFWRQKRGVVVAGRMSAEEGKKVAQWAQTLGW 246
Query: 58 SQLSDAY-RSGLEIPDADL 75
+ D ++G +P ADL
Sbjct: 247 PLIGDVLSQTGQPLPCADL 265
>sp|B5EZI8|MEND_SALA4 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Salmonella agona (strain SL483) GN=menD PE=3
SV=1
Length = 556
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 9 QDFQDYW-NEYRILQETKRL------DEFLDEQEE----AARQLEDEGEQEAEWLSTAGL 57
Q D+W +E L+E +RL D F Q+ A R +EG++ A+W T G
Sbjct: 187 QRLGDWWQDEKPWLREARRLASDKQRDWFFWRQKRGVVVAGRMSAEEGKKVAQWAQTLGW 246
Query: 58 SQLSDAY-RSGLEIPDADL 75
+ D ++G +P ADL
Sbjct: 247 PLIGDVLSQTGQPLPCADL 265
>sp|B4TBH6|MEND_SALHS 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Salmonella heidelberg (strain SL476) GN=menD
PE=3 SV=1
Length = 556
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 9 QDFQDYW-NEYRILQETKRL------DEFLDEQEE----AARQLEDEGEQEAEWLSTAGL 57
Q D+W +E L+E +RL D F Q+ A R +EG++ A+W T G
Sbjct: 187 QRLGDWWQDEKPWLREARRLASDKQRDWFFWRQKRGVVVAGRMSAEEGKKVAQWAQTLGW 246
Query: 58 SQLSDAY-RSGLEIPDADL 75
+ D ++G +P ADL
Sbjct: 247 PLIGDVLSQTGQPLPCADL 265
>sp|B5RCD4|MEND_SALG2 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Salmonella gallinarum (strain 287/91 / NCTC
13346) GN=menD PE=3 SV=1
Length = 556
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 9 QDFQDYWNEYRILQETKRLDEFLDEQEE----AARQLEDEGEQEAEWLSTAGLSQLSDAY 64
QD + + E R L+ K+ D F Q+ A R +EG++ A+W T G + D
Sbjct: 194 QDEKPWLREARRLESDKQRDWFFWRQKRGVVVAGRMSAEEGKKVAQWAQTLGWPLIGDVL 253
Query: 65 -RSGLEIPDADL 75
++G +P ADL
Sbjct: 254 SQTGQPLPCADL 265
>sp|A1JKT8|MEND_YERE8 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Yersinia enterocolitica serotype O:8 /
biotype 1B (strain 8081) GN=menD PE=3 SV=1
Length = 557
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 9 QDFQDYWNEYRILQETKRLDEFLDEQEE----AARQLEDEGEQEAEWLSTAGLSQLSDAY 64
QD + + R L + ++ D Q+ A R +EGEQ A+W G + D
Sbjct: 194 QDCHPWLRQSRPLPQIEQADWLFWRQKRGVVIAGRMTAEEGEQLAQWAELLGWPLIGDVL 253
Query: 65 -RSGLEIPDADLSRALRHLSSHQAQAVRRRVLSLNHTLRQR 104
++G +P ADL L H + + A + VL +L +
Sbjct: 254 SQTGQPLPCADLW--LAHPGAQRVLAQAQIVLQFGSSLTGK 292
>sp|A4WCP9|MEND_ENT38 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Enterobacter sp. (strain 638) GN=menD PE=3
SV=1
Length = 556
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 37 AARQLEDEGEQEAEWLSTAGLSQLSDAY-RSGLEIPDADL 75
A R EG+Q AEW T G + D ++G +P ADL
Sbjct: 226 AGRMTAAEGKQVAEWAKTLGWPLIGDVLSQTGQPLPCADL 265
>sp|B4F1A4|SPEA_PROMH Biosynthetic arginine decarboxylase OS=Proteus mirabilis (strain
HI4320) GN=speA PE=3 SV=1
Length = 635
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 16 NEYRILQETKRLDEFLDEQEEAARQLEDEGEQEAEWLSTAGLSQLSDAYRSGLEIPDADL 75
N + + +T +D +LDE+ QL +EG+ A+ L L+ R ++ +A L
Sbjct: 550 NMHNLFGDTAAVDVYLDEKGNLTYQLSEEGDTVADMLQYVKLNPAVLLERFRTQVKNAQL 609
Query: 76 SRALR 80
+AL+
Sbjct: 610 DKALQ 614
>sp|Q9JWJ3|SYC_NEIMA Cysteine--tRNA ligase OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=cysS PE=3 SV=1
Length = 699
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 13 DYWNEYRILQETKRLDEFLDEQEEAARQL-----EDEGEQEAEWL----STAGLSQLSDA 63
D W Y+I Q + L +D E+ + +D G + + ST L ++ D
Sbjct: 23 DEWEHYKIFQNSCNLRNKIDTNEKGKNGINQSVDDDNGSSGVDIIALHESTLWLIEIKDY 82
Query: 64 YRSGLEIPDA 73
YR GLE P+A
Sbjct: 83 YRLGLE-PNA 91
>sp|A8ADW9|MEND_CITK8 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Citrobacter koseri (strain ATCC BAA-895 /
CDC 4225-83 / SGSC4696) GN=menD PE=3 SV=1
Length = 556
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 2 EADVSQDQDFQDYWN-------EYRILQETKRLDEFLDEQEE----AARQLEDEGEQEAE 50
+ ++ Q D+W E R L+ K+ D F Q+ A R +EG++ A
Sbjct: 180 DTGLAWQQSLGDWWQDDKPWLREARRLESDKQRDWFFWRQKRGVVVAGRMSAEEGKKVAL 239
Query: 51 WLSTAGLSQLSDAY-RSGLEIPDADL 75
W T G + D ++G +P ADL
Sbjct: 240 WAQTLGWPLIGDVLSQTGQPLPCADL 265
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,359,272
Number of Sequences: 539616
Number of extensions: 1736864
Number of successful extensions: 8376
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 187
Number of HSP's that attempted gapping in prelim test: 8258
Number of HSP's gapped (non-prelim): 296
length of query: 130
length of database: 191,569,459
effective HSP length: 96
effective length of query: 34
effective length of database: 139,766,323
effective search space: 4752054982
effective search space used: 4752054982
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)