Query psy173
Match_columns 130
No_of_seqs 84 out of 86
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 18:25:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2200|consensus 99.6 6.6E-17 1.4E-21 146.2 -0.0 110 6-127 56-166 (674)
2 PF00536 SAM_1: SAM domain (St 86.9 2.7 5.9E-05 26.5 5.4 21 48-68 8-28 (64)
3 cd00166 SAM Sterile alpha moti 55.5 30 0.00066 20.8 4.1 34 49-87 8-41 (63)
4 PF07647 SAM_2: SAM domain (St 46.4 30 0.00066 21.6 3.1 34 49-86 10-43 (66)
5 PF06702 DUF1193: Protein of u 40.3 64 0.0014 26.8 4.9 42 56-105 168-209 (221)
6 PRK15335 type III secretion sy 32.6 64 0.0014 25.4 3.5 50 44-98 36-86 (147)
7 PF02090 SPAM: Salmonella surf 32.5 75 0.0016 25.1 3.9 50 45-99 37-87 (147)
8 PF08988 DUF1895: Protein of u 31.8 1.2E+02 0.0026 20.7 4.4 34 73-106 2-35 (68)
9 PF14229 DUF4332: Domain of un 30.4 58 0.0013 23.8 2.9 33 82-121 80-112 (122)
10 PF08845 SymE_toxin: Toxin Sym 29.6 23 0.0005 23.3 0.6 14 45-58 26-39 (57)
11 PF06006 DUF905: Bacterial pro 27.2 45 0.00099 23.3 1.7 15 81-95 7-21 (70)
12 PF13829 DUF4191: Domain of un 26.9 63 0.0014 26.9 2.8 23 76-98 178-200 (224)
13 PF01690 PLRV_ORF5: Potato lea 26.2 65 0.0014 29.6 2.9 50 56-105 409-460 (465)
14 PF08880 QLQ: QLQ; InterPro: 25.3 1.3E+02 0.0027 18.3 3.2 23 80-102 1-23 (37)
15 TIGR02019 BchJ bacteriochlorop 24.2 67 0.0014 25.8 2.4 45 48-93 23-71 (188)
16 PF02061 Lambda_CIII: Lambda P 22.8 58 0.0013 21.0 1.4 25 75-99 17-41 (45)
17 PF14674 FANCI_S1-cap: FANCI s 22.3 20 0.00042 24.0 -0.8 29 72-105 14-42 (53)
18 PF04158 Sof1: Sof1-like domai 21.8 53 0.0012 23.5 1.3 33 78-122 6-38 (88)
19 PF09010 AsiA: Anti-Sigma Fact 21.8 80 0.0017 23.1 2.2 41 46-91 31-71 (91)
20 KOG1722|consensus 21.4 79 0.0017 25.1 2.2 29 86-122 64-105 (155)
21 PF08977 BOFC_N: Bypass of For 21.2 36 0.00078 22.4 0.2 13 8-20 23-35 (51)
22 KOG2916|consensus 21.1 59 0.0013 28.3 1.6 25 72-103 41-65 (304)
No 1
>KOG2200|consensus
Probab=99.61 E-value=6.6e-17 Score=146.16 Aligned_cols=110 Identities=29% Similarity=0.459 Sum_probs=95.8
Q ss_pred CccccHHHHHHHHHHHHHhhccccchhH-HHHHhhhcCchhhHHHHHHHHhChhhhHhhhhcCCCCCcchhhHHhccCCH
Q psy173 6 SQDQDFQDYWNEYRILQETKRLDEFLDE-QEEAARQLEDEGEQEAEWLSTAGLSQLSDAYRSGLEIPDADLSRALRHLSS 84 (130)
Q Consensus 6 ~~~~~m~dyW~Eve~I~~s~~~~~~~~E-~~~~~~~~~dEGE~EaeWL~dAGLs~L~~~~~~g~e~~~~d~~~~LstLTr 84 (130)
+++.+|++||.|.++|+..-+.. +| +....+..||+|+.|.+||+++|+|.|.+.- -|. +.+...+|||||+
T Consensus 56 p~~ls~~sy~~~~~~i~~~~~~~---~~~~~~~~s~~pe~g~~~~e~l~~~~~s~~~~~~-v~~---~~~~~~~~s~~t~ 128 (674)
T KOG2200|consen 56 PDELSMESYWPEDENIQVNWELG---QEDSGGSISLLPEEGEAEPEWLKRLGLSKLEGSR-VGI---YDEVIGSLSTLTI 128 (674)
T ss_pred cccccccccCcccccchhccccc---ccccCcceeeccccCcccHHHHHhhccccccccc-cCC---ccccchhhccccc
Confidence 47899999999999999999887 44 6667888999999999999999999997741 232 4567899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCccccccccccc
Q psy173 85 HQAQAVRRRVLSLNHTLRQRGARQLRPKNRKPDIRHVFKDVER 127 (130)
Q Consensus 85 tQaaAV~rRv~t~n~TlR~R~k~r~~~k~~~pDvRDIF~~~~s 127 (130)
+|+|||+||...+-+++|+.++ +.+.|||||+|.++.+
T Consensus 129 g~~aa~~r~d~~~~~s~~~q~~-----~~~~~~Vrd~~~~~~~ 166 (674)
T KOG2200|consen 129 GQLAAVERRDSFPALSLRRQHK-----GGHQPDVRDWFEPFSP 166 (674)
T ss_pred chHHHHhhhhcchhhhhhhccC-----CCCCchHHHHhhccCC
Confidence 9999999999999999999886 3599999999998754
No 2
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=86.93 E-value=2.7 Score=26.49 Aligned_cols=21 Identities=29% Similarity=0.705 Sum_probs=18.0
Q ss_pred HHHHHHHhChhhhHhhhhcCC
Q psy173 48 EAEWLSTAGLSQLSDAYRSGL 68 (130)
Q Consensus 48 EaeWL~dAGLs~L~~~~~~g~ 68 (130)
=++||+..||+..+..|..+.
T Consensus 8 V~~WL~~~~l~~y~~~F~~~~ 28 (64)
T PF00536_consen 8 VSEWLKSLGLEQYAENFEKNY 28 (64)
T ss_dssp HHHHHHHTTGGGGHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHcCC
Confidence 368999999999999996663
No 3
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=55.47 E-value=30 Score=20.78 Aligned_cols=34 Identities=38% Similarity=0.606 Sum_probs=22.6
Q ss_pred HHHHHHhChhhhHhhhhcCCCCCcchhhHHhccCCHHHH
Q psy173 49 AEWLSTAGLSQLSDAYRSGLEIPDADLSRALRHLSSHQA 87 (130)
Q Consensus 49 aeWL~dAGLs~L~~~~~~g~e~~~~d~~~~LstLTrtQa 87 (130)
.+||...|++.....|... .+ +... |..||...-
T Consensus 8 ~~wL~~~~~~~y~~~f~~~-~i---~g~~-L~~l~~~dL 41 (63)
T cd00166 8 AEWLESLGLGQYADNFREN-GI---DGDL-LLLLTEEDL 41 (63)
T ss_pred HHHHHHcChHHHHHHHHHc-CC---CHHH-HhHCCHHHH
Confidence 5799999999999999543 22 2333 336766543
No 4
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=46.36 E-value=30 Score=21.62 Aligned_cols=34 Identities=38% Similarity=0.643 Sum_probs=23.4
Q ss_pred HHHHHHhChhhhHhhhhcCCCCCcchhhHHhccCCHHH
Q psy173 49 AEWLSTAGLSQLSDAYRSGLEIPDADLSRALRHLSSHQ 86 (130)
Q Consensus 49 aeWL~dAGLs~L~~~~~~g~e~~~~d~~~~LstLTrtQ 86 (130)
++||...||...+..|... .+ +....|..||...
T Consensus 10 ~~WL~~~gl~~y~~~f~~~-~i---~g~~~L~~l~~~~ 43 (66)
T PF07647_consen 10 AEWLKSLGLEQYADNFREN-GI---DGLEDLLQLTEED 43 (66)
T ss_dssp HHHHHHTTCGGGHHHHHHT-TC---SHHHHHTTSCHHH
T ss_pred HHHHHHCCcHHHHHHHHHc-CC---cHHHHHhhCCHHH
Confidence 5799999999999999542 23 3324456676643
No 5
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function. Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.
Probab=40.30 E-value=64 Score=26.80 Aligned_cols=42 Identities=24% Similarity=0.164 Sum_probs=30.1
Q ss_pred ChhhhHhhhhcCCCCCcchhhHHhccCCHHHHHHHHHHHHHHHHHHHhhc
Q psy173 56 GLSQLSDAYRSGLEIPDADLSRALRHLSSHQAQAVRRRVLSLNHTLRQRG 105 (130)
Q Consensus 56 GLs~L~~~~~~g~e~~~~d~~~~LstLTrtQaaAV~rRv~t~n~TlR~R~ 105 (130)
.|++++..+..- | ++.--||..+.+|+.||+..+-++|.+=-
T Consensus 168 ~Ls~~m~~s~~~------D--~l~PvL~e~Hl~AldrRL~~Vl~~V~~Ci 209 (221)
T PF06702_consen 168 RLSDLMRESLSR------D--PLAPVLTEPHLEALDRRLDKVLRTVEKCI 209 (221)
T ss_pred cHHHHHHHHhcc------C--ccCccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 377776654321 1 34445789999999999999999987643
No 6
>PRK15335 type III secretion system protein SpaM; Provisional
Probab=32.56 E-value=64 Score=25.39 Aligned_cols=50 Identities=28% Similarity=0.384 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHhChhhhHhhh-hcCCCCCcchhhHHhccCCHHHHHHHHHHHHHHH
Q psy173 44 EGEQEAEWLSTAGLSQLSDAY-RSGLEIPDADLSRALRHLSSHQAQAVRRRVLSLN 98 (130)
Q Consensus 44 EGE~EaeWL~dAGLs~L~~~~-~~g~e~~~~d~~~~LstLTrtQaaAV~rRv~t~n 98 (130)
+.|.||==+++|||-.|+... .+|..++-.++-++| |.| +.|+|-+..||
T Consensus 36 d~e~Eai~~q~agLk~LL~~~r~e~~~l~r~elyall----Rrq-aivRRQ~~~L~ 86 (147)
T PRK15335 36 QAEEEAILEQIAGLKLLLDTLRAENRQLSREEIYTLL----RKQ-SIVRRQIKDLE 86 (147)
T ss_pred hHHHHHHHHHHhHHHHHHHHhchhcccccHHHHHHHH----HHH-HHHHHHHHhcc
Confidence 467788889999999999865 334434333433333 323 34555555554
No 7
>PF02090 SPAM: Salmonella surface presentation of antigen gene type M protein; InterPro: IPR002954 The Salmonella typhimurium Surface Presentation of Antigens M gene (SpaM) is one of 12 that form a cluster responsible for invasion properties []. The gene product is required for entry by the bacterium into epithelial cells, and is thus considered to be a virulence factor []. Other Spa genes in the cluster are related to invasion (Inv) genes in similar Salmonella and Shigella species [], and flagella biosynthesis genes in Helicobacter pylori []. A homologue of this protein has been found recently in Salmonella enterica []. The protein, named InvI, is required by the organism to gain access to mammalian epithelial cells, and cellular mutants (InvI-) failed to successfully infect these cells. It has also been found that the inv-spa loci of this particular species encode for a type III protein secretion system, essential in the bacterium's host cell invasion process [].
Probab=32.47 E-value=75 Score=25.11 Aligned_cols=50 Identities=36% Similarity=0.430 Sum_probs=31.9
Q ss_pred hhHHHHHHHHhChhhhHhhhh-cCCCCCcchhhHHhccCCHHHHHHHHHHHHHHHH
Q psy173 45 GEQEAEWLSTAGLSQLSDAYR-SGLEIPDADLSRALRHLSSHQAQAVRRRVLSLNH 99 (130)
Q Consensus 45 GE~EaeWL~dAGLs~L~~~~~-~g~e~~~~d~~~~LstLTrtQaaAV~rRv~t~n~ 99 (130)
.+.++==++.|||-.|.+.-. .|.-++..++-++|.++ |.|++++..||-
T Consensus 37 ~ee~~~~~Q~~~L~~LL~~~r~~~~vl~r~~L~allRkq-----AVvRrqi~eL~l 87 (147)
T PF02090_consen 37 AEEEAIEEQRAGLQSLLDTQRAEGCVLSREELYALLRKQ-----AVVRRQIQELNL 87 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHccccccHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 344444479999999998763 33555555555555443 567777777764
No 8
>PF08988 DUF1895: Protein of unknown function (DUF1895); InterPro: IPR015081 The YscE protein, produced by the pathogen Yersinia, assumes a secondary structure composed of two anti-parallel alpha-helices separated by a flexible loop. The function of this protein is, as yet, unknown. ; PDB: 1ZW0_B 2P58_A 2UWJ_E 2Q1K_D 3PH0_B.
Probab=31.83 E-value=1.2e+02 Score=20.72 Aligned_cols=34 Identities=15% Similarity=0.318 Sum_probs=29.8
Q ss_pred chhhHHhccCCHHHHHHHHHHHHHHHHHHHhhcc
Q psy173 73 ADLSRALRHLSSHQAQAVRRRVLSLNHTLRQRGA 106 (130)
Q Consensus 73 ~d~~~~LstLTrtQaaAV~rRv~t~n~TlR~R~k 106 (130)
++++-.|+.-+..+++++.-++...-.+++++..
T Consensus 2 T~LE~~L~~~~~~~~~~i~~~L~~a~~~vkr~L~ 35 (68)
T PF08988_consen 2 TNLEQRLSNASGEEARAIEQQLRQAQSQVKRKLD 35 (68)
T ss_dssp CHHHHHHTCTSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677888888999999999999999999998874
No 9
>PF14229 DUF4332: Domain of unknown function (DUF4332)
Probab=30.42 E-value=58 Score=23.83 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCccccc
Q psy173 82 LSSHQAQAVRRRVLSLNHTLRQRGARQLRPKNRKPDIRHV 121 (130)
Q Consensus 82 LTrtQaaAV~rRv~t~n~TlR~R~k~r~~~k~~~pDvRDI 121 (130)
|...-++-+..++..+|.+.+.+. ...|++.+|
T Consensus 80 LA~~~p~~L~~~l~~~n~~~~~~r-------~~~p~~~~v 112 (122)
T PF14229_consen 80 LAQRNPQNLHQKLGRLNRKLKLRR-------QLCPSLEEV 112 (122)
T ss_pred HHhCCHHHHHHHHHHHHHHhcCCc-------CCCCCHHHH
Confidence 555566778888999999777654 245888766
No 10
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=29.62 E-value=23 Score=23.30 Aligned_cols=14 Identities=29% Similarity=0.667 Sum_probs=11.0
Q ss_pred hhHHHHHHHHhChh
Q psy173 45 GEQEAEWLSTAGLS 58 (130)
Q Consensus 45 GE~EaeWL~dAGLs 58 (130)
-=+.-.||.+|||.
T Consensus 26 i~L~G~WL~~aGF~ 39 (57)
T PF08845_consen 26 IRLKGKWLEEAGFT 39 (57)
T ss_pred EEEchhhhHHhCCC
Confidence 44567899999985
No 11
>PF06006 DUF905: Bacterial protein of unknown function (DUF905); InterPro: IPR009253 This family consists of several short hypothetical proteobacterial proteins of unknown function.; PDB: 2HJJ_A.
Probab=27.23 E-value=45 Score=23.34 Aligned_cols=15 Identities=27% Similarity=0.273 Sum_probs=9.6
Q ss_pred cCCHHHHHHHHHHHH
Q psy173 81 HLSSHQAQAVRRRVL 95 (130)
Q Consensus 81 tLTrtQaaAV~rRv~ 95 (130)
++||.||.||...+.
T Consensus 7 ~ftr~qA~aV~a~y~ 21 (70)
T PF06006_consen 7 PFTREQAEAVAAQYR 21 (70)
T ss_dssp ---HHHHHHHHHH-T
T ss_pred CccHHHHHHHHHHhc
Confidence 699999999987654
No 12
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=26.91 E-value=63 Score=26.89 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.1
Q ss_pred hHHhccCCHHHHHHHHHHHHHHH
Q psy173 76 SRALRHLSSHQAQAVRRRVLSLN 98 (130)
Q Consensus 76 ~~~LstLTrtQaaAV~rRv~t~n 98 (130)
.-+=.+||+.+..+|.+|+++|.
T Consensus 178 ~KLp~~lt~~ev~~v~~RL~AL~ 200 (224)
T PF13829_consen 178 MKLPRNLTKAEVDAVNKRLRALG 200 (224)
T ss_pred HhCCccCCHHHHHHHHHHHHHhc
Confidence 34556799999999999999998
No 13
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=26.18 E-value=65 Score=29.58 Aligned_cols=50 Identities=20% Similarity=0.145 Sum_probs=34.2
Q ss_pred ChhhhHhhhhcCCCCCcch--hhHHhccCCHHHHHHHHHHHHHHHHHHHhhc
Q psy173 56 GLSQLSDAYRSGLEIPDAD--LSRALRHLSSHQAQAVRRRVLSLNHTLRQRG 105 (130)
Q Consensus 56 GLs~L~~~~~~g~e~~~~d--~~~~LstLTrtQaaAV~rRv~t~n~TlR~R~ 105 (130)
|++.+.+.|-.|.-+.-.. ....|++||+.|++-..|=-++++.|.-+.-
T Consensus 409 g~~Ss~sgsLtGGtLk~k~~~s~~~L~kLTteQR~eYeRIR~S~GkTAAkeY 460 (465)
T PF01690_consen 409 GSSSSGSGSLTGGTLKRKATASDEKLSKLTTEQRAEYERIRNSLGKTAAKEY 460 (465)
T ss_pred cccccccccccCCccccccchhhhhhcccCHHHHHHHHHHHhccCHHHHHHH
Confidence 4555555554553332222 4579999999999999888888888876543
No 14
>PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif. QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.29 E-value=1.3e+02 Score=18.27 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHH
Q psy173 80 RHLSSHQAQAVRRRVLSLNHTLR 102 (130)
Q Consensus 80 stLTrtQaaAV~rRv~t~n~TlR 102 (130)
|.||..|-...+.-+..|..-.|
T Consensus 1 s~FT~~Ql~~L~~Qi~ayK~l~~ 23 (37)
T PF08880_consen 1 SPFTPAQLQELRAQILAYKYLAR 23 (37)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHc
Confidence 67999999999999999998666
No 15
>TIGR02019 BchJ bacteriochlorophyll 4-vinyl reductase. This model represents the component of bacteriochlorophyll synthetase responsible for reduction of the B-ring pendant ethylene (4-vinyl) group. It appears that this step must precede the reduction of ring D, at least by the "dark" protochlorophyllide reductase enzymes BchN, BchB and BchL. This family appears to be present in photosynthetic bacteria except for the cyanobacterial clade. Cyanobacteria must use a non-orthologous gene to carry out this required step for the biosynthesis of both bacteriochlorophyll and chlorophyll.
Probab=24.18 E-value=67 Score=25.84 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=30.3
Q ss_pred HHHHHHHhChhhhHhhhhcCCCCCcchhhHHhccCC----HHHHHHHHHH
Q psy173 48 EAEWLSTAGLSQLSDAYRSGLEIPDADLSRALRHLS----SHQAQAVRRR 93 (130)
Q Consensus 48 EaeWL~dAGLs~L~~~~~~g~e~~~~d~~~~LstLT----rtQaaAV~rR 93 (130)
-+.||+.||++.|+.+... .++++.....|-..|. ...+.+|-.+
T Consensus 23 ~~~~~~~~g~~~~~~~~p~-~mv~E~~~~aL~~aL~~elG~~aa~~vl~~ 71 (188)
T TIGR02019 23 ADRALAAAGQGVLRPGPPS-GMLPESQFSTLHRWLRDTLGETAAARLLRE 71 (188)
T ss_pred HHHHHHHcCcccccCCCch-hcCCHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 3579999999999998754 4566666655544443 3466666544
No 16
>PF02061 Lambda_CIII: Lambda Phage CIII; InterPro: IPR013056 Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]. Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.82 E-value=58 Score=20.96 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=21.8
Q ss_pred hhHHhccCCHHHHHHHHHHHHHHHH
Q psy173 75 LSRALRHLSSHQAQAVRRRVLSLNH 99 (130)
Q Consensus 75 ~~~~LstLTrtQaaAV~rRv~t~n~ 99 (130)
++.+|.-.||.=.++-+|-.++|||
T Consensus 17 ~ESLLdrItRklr~gwKRl~~iLnQ 41 (45)
T PF02061_consen 17 SESLLDRITRKLRDGWKRLWDILNQ 41 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3578888999999999999999987
No 17
>PF14674 FANCI_S1-cap: FANCI solenoid 1 cap; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=22.30 E-value=20 Score=23.95 Aligned_cols=29 Identities=17% Similarity=0.357 Sum_probs=16.3
Q ss_pred cchhhHHhccCCHHHHHHHHHHHHHHHHHHHhhc
Q psy173 72 DADLSRALRHLSSHQAQAVRRRVLSLNHTLRQRG 105 (130)
Q Consensus 72 ~~d~~~~LstLTrtQaaAV~rRv~t~n~TlR~R~ 105 (130)
.+.++.+|+||+..+-.-+-. |+.|++|.
T Consensus 14 ~e~LQ~~Lq~L~edeLt~~lt-----~~AlKGk~ 42 (53)
T PF14674_consen 14 TEELQKFLQTLKEDELTDLLT-----NQALKGKD 42 (53)
T ss_dssp THHHHHHHHHH-S-SHHHHHH-----HHHH-HHH
T ss_pred HHHHHHHHHHcchhHHHHHHH-----HHhhcchH
Confidence 346778888887766554432 56666654
No 18
>PF04158 Sof1: Sof1-like domain ; InterPro: IPR007287 Sof1 is essential for cell growth and is a component of the nucleolar rRNA processing machinery [].
Probab=21.83 E-value=53 Score=23.52 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=26.1
Q ss_pred HhccCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcccccc
Q psy173 78 ALRHLSSHQAQAVRRRVLSLNHTLRQRGARQLRPKNRKPDIRHVF 122 (130)
Q Consensus 78 ~LstLTrtQaaAV~rRv~t~n~TlR~R~k~r~~~k~~~pDvRDIF 122 (130)
-|.+||..+.++. .||..|+.|.+ ..|.|+-|=
T Consensus 6 klG~ls~REr~~l-----~Y~~~Lkekyk-------~~pEIrRI~ 38 (88)
T PF04158_consen 6 KLGVLSPRERAAL-----EYREALKEKYK-------HMPEIRRIA 38 (88)
T ss_pred hcCCCCHHHHHHH-----HHHHHHHHHHH-------hhHHHHHHH
Confidence 4567888887775 69999999985 789988774
No 19
>PF09010 AsiA: Anti-Sigma Factor A; InterPro: IPR015100 Anti-sigma factor A is a transcriptional inhibitor that inhibits sigma 70-directed transcription by weakening its interaction with the core of the host's RNA polymerase. It is an all-helical protein, composed of six helical segments and intervening loops and turns, as well as a helix-turn-helix DNA binding motif, although neither free anti-sigma factor nor anti-sigma factor bound to sigma-70 has been shown to interact directly with DNA. In solution, the protein forms a symmetric dimer of small (10.59 kDa) protomers, which are composed of helix and coil regions and are devoid of beta-strand/sheet secondary structural elements []. ; PDB: 1TKV_A 1JR5_B 1TLH_A 1TL6_A.
Probab=21.79 E-value=80 Score=23.13 Aligned_cols=41 Identities=15% Similarity=0.314 Sum_probs=27.2
Q ss_pred hHHHHHHHHhChhhhHhhhhcCCCCCcchhhHHhccCCHHHHHHHH
Q psy173 46 EQEAEWLSTAGLSQLSDAYRSGLEIPDADLSRALRHLSSHQAQAVR 91 (130)
Q Consensus 46 E~EaeWL~dAGLs~L~~~~~~g~e~~~~d~~~~LstLTrtQaaAV~ 91 (130)
+.=-++|.++|+-+- .|.+++-...-.+...||..|.+.+.
T Consensus 31 ~~FIaFLNElG~r~~-----~G~~~t~~sfr~m~~~lt~~ek~eli 71 (91)
T PF09010_consen 31 ELFIAFLNELGFRTP-----TGKEFTQMSFRQMFKRLTQEEKEELI 71 (91)
T ss_dssp HHHHHHHHHHT-ES------SSSE--HHHHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHHHHhccccc-----CCcchhHHHHHHHHHHcCHHHHHHHH
Confidence 445679999999875 47777666667788889988887663
No 20
>KOG1722|consensus
Probab=21.37 E-value=79 Score=25.11 Aligned_cols=29 Identities=31% Similarity=0.580 Sum_probs=19.1
Q ss_pred HHHHHHHHHHH-------------HHHHHHhhccccCCCCCCCCcccccc
Q psy173 86 QAQAVRRRVLS-------------LNHTLRQRGARQLRPKNRKPDIRHVF 122 (130)
Q Consensus 86 QaaAV~rRv~t-------------~n~TlR~R~k~r~~~k~~~pDvRDIF 122 (130)
|-+++++|-.. |.-.+.+|| .+|+||+-=
T Consensus 64 ~ee~~kkrtrrt~k~~qRaI~GasL~~I~~KRn--------~kpevR~a~ 105 (155)
T KOG1722|consen 64 QEEAAKKRTRRTVKKFQRAIVGASLDVILEKRN--------QKPEVRKAA 105 (155)
T ss_pred hHHHHHHHhhhhhhhhhhhhccccHHHHHHHhc--------cChHHHHHH
Confidence 55666666544 555667776 689998753
No 21
>PF08977 BOFC_N: Bypass of Forespore C, N terminal; InterPro: IPR015071 The N-terminal domain of, bypass of forespore C, is composed of a four-stranded beta-sheet covered by an alpha-helix. The beta-sheet has a beta2-beta1-beta4-beta3 topology, where strands beta1 and beta2 and strands beta3 and beta4 are connected by beta-turns, whereas strands beta2 and beta3 are joined by an alpha-helix that runs across one face of the beta-sheet. This domain is similar to the third immunoglobulin G-binding domain of protein G from Streptococcus, the latter belonging to a large and diverse group of cell surface-associated proteins that bind to immunoglobulins. It has been hypothesised that this domain may be a mediator of protein-protein interactions involved in proteolytic events at the cell surface []. ; PDB: 2BW2_A.
Probab=21.20 E-value=36 Score=22.44 Aligned_cols=13 Identities=23% Similarity=0.723 Sum_probs=10.4
Q ss_pred cccHHHHHHHHHH
Q psy173 8 DQDFQDYWNEYRI 20 (130)
Q Consensus 8 ~~~m~dyW~Eve~ 20 (130)
-.+|+|||..|+.
T Consensus 23 i~s~ed~w~~Y~~ 35 (51)
T PF08977_consen 23 IWSMEDFWAKYKG 35 (51)
T ss_dssp EEEHHHHHHHSTT
T ss_pred eccHHHHHHhhcC
Confidence 4689999998863
No 22
>KOG2916|consensus
Probab=21.15 E-value=59 Score=28.29 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.2
Q ss_pred cchhhHHhccCCHHHHHHHHHHHHHHHHHHHh
Q psy173 72 DADLSRALRHLSSHQAQAVRRRVLSLNHTLRQ 103 (130)
Q Consensus 72 ~~d~~~~LstLTrtQaaAV~rRv~t~n~TlR~ 103 (130)
+-+.+.|||-||| ||+++.|+-+|-
T Consensus 41 niEGmiLlsELSr-------RRIRSI~klirV 65 (304)
T KOG2916|consen 41 NIEGMILLSELSR-------RRIRSIQKLIRV 65 (304)
T ss_pred CcccchhhhHHHH-------HHHHHHHHHHhc
Confidence 3477899999986 899999998885
Done!