Query psy173
Match_columns 130
No_of_seqs 84 out of 86
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 18:25:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dky_A RHO-GTPase-activating p 96.9 0.0021 7.1E-08 45.7 6.2 62 44-105 22-84 (91)
2 2h80_A STAR-related lipid tran 96.8 0.0011 3.7E-08 46.3 4.0 59 44-102 20-79 (81)
3 3bq7_A Diacylglycerol kinase d 69.8 8.3 0.00028 25.0 4.7 19 48-66 15-33 (81)
4 2f3n_A SH3 and multiple ankyri 51.5 13 0.00044 23.8 3.0 18 49-66 11-28 (76)
5 2gle_A Neurabin-1; SAM domain, 48.3 38 0.0013 21.1 4.8 18 49-66 13-30 (74)
6 2e8o_A SAM domain and HD domai 47.6 39 0.0013 22.8 5.1 22 45-66 32-55 (103)
7 1v85_A Similar to ring finger 44.2 18 0.00061 24.0 2.9 37 45-86 22-60 (91)
8 2eap_A Lymphocyte cytosolic pr 41.8 14 0.00049 25.9 2.2 13 47-59 26-38 (90)
9 2kg5_A ARF-GAP, RHO-GAP domain 40.1 86 0.0029 21.3 6.1 38 47-88 28-65 (100)
10 1x40_A ARAP2; ASAP-related pro 39.5 81 0.0028 20.8 6.2 20 47-66 17-36 (91)
11 1b4f_A EPHB2; SAM domain, EPH 36.9 28 0.00095 22.4 2.9 18 49-66 15-32 (82)
12 1ucv_A Ephrin type-A receptor 35.9 44 0.0015 21.5 3.8 18 49-66 11-28 (81)
13 2hjj_A Hypothetical protein YK 35.5 15 0.00052 25.6 1.5 16 80-95 10-25 (87)
14 2k4p_A Phosphatidylinositol-3, 35.4 32 0.0011 23.0 3.1 33 49-85 30-62 (86)
15 1jr5_A 10 kDa anti-sigma facto 34.5 35 0.0012 23.9 3.2 40 45-90 30-69 (90)
16 2kz5_A Transcription factor NF 34.0 20 0.0007 25.2 1.9 31 73-111 46-78 (91)
17 3h8m_A Ephrin type-A receptor 32.8 1.1E+02 0.0037 20.4 5.4 36 47-86 27-62 (90)
18 3hil_A Ephrin type-A receptor 32.4 35 0.0012 22.5 2.9 35 48-86 26-60 (82)
19 2qkq_A Ephrin type-B receptor 31.5 34 0.0012 22.1 2.6 19 49-67 19-37 (83)
20 1kw4_A Polyhomeotic; SAM domai 30.7 35 0.0012 22.8 2.7 36 45-85 19-55 (89)
21 2kso_A Ephrin type-A receptor 30.5 55 0.0019 21.3 3.6 34 49-86 20-53 (82)
22 1v38_A SAM-domain protein sams 29.4 48 0.0016 21.4 3.1 16 50-65 17-32 (78)
23 2eam_A Putative 47 kDa protein 28.9 28 0.00097 22.3 1.9 18 49-66 16-33 (80)
24 2dkz_A Hypothetical protein LO 28.6 37 0.0013 23.4 2.5 46 46-93 21-75 (84)
25 3sei_A Caskin-1; SAM domain, p 26.5 72 0.0025 22.9 3.9 37 47-87 81-117 (149)
26 3kka_C Ephrin type-A receptor 25.9 51 0.0017 21.9 2.8 34 49-86 25-58 (86)
27 1ez3_A Syntaxin-1A; three heli 24.5 41 0.0014 22.7 2.1 21 7-27 3-23 (127)
28 1imu_A Hypothetical protein HI 23.7 1E+02 0.0035 20.7 4.1 39 84-123 68-106 (107)
29 2eao_A Ephrin type-B receptor 22.2 67 0.0023 21.5 2.9 18 49-66 26-43 (99)
30 2kiv_A Ankyrin repeat and ster 22.0 81 0.0028 22.4 3.4 18 49-66 18-35 (148)
31 1b0x_A Protein (EPHA4 receptor 21.6 1.1E+02 0.0039 20.1 3.9 18 49-66 30-47 (94)
No 1
>2dky_A RHO-GTPase-activating protein 7; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2gyt_A 2kap_A
Probab=96.94 E-value=0.0021 Score=45.69 Aligned_cols=62 Identities=23% Similarity=0.361 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHhChhhhHhhhhcC-CCCCcchhhHHhccCCHHHHHHHHHHHHHHHHHHHhhc
Q psy173 44 EGEQEAEWLSTAGLSQLSDAYRSG-LEIPDADLSRALRHLSSHQAQAVRRRVLSLNHTLRQRG 105 (130)
Q Consensus 44 EGE~EaeWL~dAGLs~L~~~~~~g-~e~~~~d~~~~LstLTrtQaaAV~rRv~t~n~TlR~R~ 105 (130)
|....-.||+.||+++-.+-|+.+ .+|+-.....==.-|-+.+-+++.||+.+||+-..+|=
T Consensus 22 eA~eAC~WLRaaGFPQYAqlyed~~FPIdi~~VkkDH~FLd~d~l~sL~RRl~tLN~Ca~Mkl 84 (91)
T 2dky_A 22 EAKEACDWLRATGFPQYAQLYEDFLFPIDISLVKREHDFLDRDAIEALCRRLNTLNKCAVMKL 84 (91)
T ss_dssp HHHHHHHHHHHHTCTTHHHHHHTTCCSCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHcCChHHHHhcccccccccHHHhccCCCccCHHHHHHHHHHHHHHHHHhhhee
Confidence 344445899999999999999887 34422221222345889999999999999999877653
No 2
>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2jw2_A
Probab=96.84 E-value=0.0011 Score=46.27 Aligned_cols=59 Identities=22% Similarity=0.419 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHhChhhhHhhhhcC-CCCCcchhhHHhccCCHHHHHHHHHHHHHHHHHHH
Q psy173 44 EGEQEAEWLSTAGLSQLSDAYRSG-LEIPDADLSRALRHLSSHQAQAVRRRVLSLNHTLR 102 (130)
Q Consensus 44 EGE~EaeWL~dAGLs~L~~~~~~g-~e~~~~d~~~~LstLTrtQaaAV~rRv~t~n~TlR 102 (130)
|....-.||+.||+++-.+-|+.| .+|+-.....==+-|-+.+-.++.||+.+||+-..
T Consensus 20 eA~eAC~WLRaaGFPQYAqlyed~qFPIdi~~VkkDH~FLd~d~l~sL~RRl~tLN~Ca~ 79 (81)
T 2h80_A 20 EAKEACDWLRAAGFPQYAQLYEDSQFPINIVAVKNDHDFLEKDLVEPLCRRLNTLNKCAS 79 (81)
T ss_dssp HHHHHHHHHHHTTCHHHHHTTTTTCCCSCHHHHHTSCCSSCSTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCcHHHHHhhcccccccHHHhccCCCccCHHHHHHHHHHHHHHHhhhh
Confidence 334445899999999999999877 33321111111345778899999999999998654
No 3
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=69.84 E-value=8.3 Score=25.03 Aligned_cols=19 Identities=26% Similarity=0.567 Sum_probs=16.2
Q ss_pred HHHHHHHhChhhhHhhhhc
Q psy173 48 EAEWLSTAGLSQLSDAYRS 66 (130)
Q Consensus 48 EaeWL~dAGLs~L~~~~~~ 66 (130)
=++||...||+.....|..
T Consensus 15 V~~WL~~lgl~~Y~~~F~~ 33 (81)
T 3bq7_A 15 VAAWLEHLSLCEYKDIFTR 33 (81)
T ss_dssp HHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 3569999999999999954
No 4
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=51.51 E-value=13 Score=23.81 Aligned_cols=18 Identities=22% Similarity=0.649 Sum_probs=15.9
Q ss_pred HHHHHHhChhhhHhhhhc
Q psy173 49 AEWLSTAGLSQLSDAYRS 66 (130)
Q Consensus 49 aeWL~dAGLs~L~~~~~~ 66 (130)
++||...||+.....|..
T Consensus 11 ~~WL~~lgl~~Y~~~F~~ 28 (76)
T 2f3n_A 11 GDWLESIHLGEHRDRFED 28 (76)
T ss_dssp HHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 569999999999999964
No 5
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=48.26 E-value=38 Score=21.11 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=16.1
Q ss_pred HHHHHHhChhhhHhhhhc
Q psy173 49 AEWLSTAGLSQLSDAYRS 66 (130)
Q Consensus 49 aeWL~dAGLs~L~~~~~~ 66 (130)
++||...||+.....|..
T Consensus 13 ~~WL~~~gl~~y~~~F~~ 30 (74)
T 2gle_A 13 SHWLVGLSLDQYVSEFSA 30 (74)
T ss_dssp HHHHHHTTTHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 589999999999999964
No 6
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.64 E-value=39 Score=22.80 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=17.8
Q ss_pred hhHHHHHHHHhChhh--hHhhhhc
Q psy173 45 GEQEAEWLSTAGLSQ--LSDAYRS 66 (130)
Q Consensus 45 GE~EaeWL~dAGLs~--L~~~~~~ 66 (130)
-+.=++||...||+. ....|..
T Consensus 32 ~~~V~~WL~~lgl~~~~y~~~F~~ 55 (103)
T 2e8o_A 32 PEQVCSFLRRGGFEEPVLLKNIRE 55 (103)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHH
Confidence 355578999999998 9888854
No 7
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=44.21 E-value=18 Score=24.01 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=24.3
Q ss_pred hhHHHHHHHHhCh--hhhHhhhhcCCCCCcchhhHHhccCCHHH
Q psy173 45 GEQEAEWLSTAGL--SQLSDAYRSGLEIPDADLSRALRHLSSHQ 86 (130)
Q Consensus 45 GE~EaeWL~dAGL--s~L~~~~~~g~e~~~~d~~~~LstLTrtQ 86 (130)
.+.=++||...|| +.....|... .| +.. .|-+||..-
T Consensus 22 ~~dV~~WL~~~gl~~~~Y~~~F~~~-~I---dG~-~Ll~Lt~~d 60 (91)
T 1v85_A 22 TEEVVLWLEQLGPWASLYRDRFLSE-RV---NGR-LLLTLTEEE 60 (91)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHT-TC---CHH-HHHHCCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHh-CC---CHH-HHhcCCHHH
Confidence 3444689999999 9999999654 33 333 333566543
No 8
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.82 E-value=14 Score=25.87 Aligned_cols=13 Identities=8% Similarity=0.233 Sum_probs=10.4
Q ss_pred HHHHHHHHhChhh
Q psy173 47 QEAEWLSTAGLSQ 59 (130)
Q Consensus 47 ~EaeWL~dAGLs~ 59 (130)
.=|+||++.||..
T Consensus 26 ~VadWLkk~g~~~ 38 (90)
T 2eap_A 26 SLADYFKKLNYKD 38 (90)
T ss_dssp THHHHHHHTTCHH
T ss_pred HHHHHHHHcCCch
Confidence 3478999999955
No 9
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=40.08 E-value=86 Score=21.31 Aligned_cols=38 Identities=29% Similarity=0.460 Sum_probs=25.0
Q ss_pred HHHHHHHHhChhhhHhhhhcCCCCCcchhhHHhccCCHHHHH
Q psy173 47 QEAEWLSTAGLSQLSDAYRSGLEIPDADLSRALRHLSSHQAQ 88 (130)
Q Consensus 47 ~EaeWL~dAGLs~L~~~~~~g~e~~~~d~~~~LstLTrtQaa 88 (130)
.=++||...||......|... .+ +....|..||..--.
T Consensus 28 ~V~~WL~~lgL~qY~~~F~~~-gi---d~~~~L~~Lt~eDLk 65 (100)
T 2kg5_A 28 DIAVWLATVHLEQYADTFRRH-GL---ATAGAARGLGHEELK 65 (100)
T ss_dssp BHHHHHGGGTCGGGHHHHHHT-TC---CBHHHHTTCCHHHHH
T ss_pred hHHHHHHHCCCHHHHHHHHHc-CC---ChHHHHHhcCHHHHH
Confidence 346799999999999999543 22 222445567765433
No 10
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=39.48 E-value=81 Score=20.84 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=17.0
Q ss_pred HHHHHHHHhChhhhHhhhhc
Q psy173 47 QEAEWLSTAGLSQLSDAYRS 66 (130)
Q Consensus 47 ~EaeWL~dAGLs~L~~~~~~ 66 (130)
.=++||...||.+....|..
T Consensus 17 ~V~~WL~~lgL~qY~~~F~~ 36 (91)
T 1x40_A 17 DIKDFLMSINLEQYLLHFHE 36 (91)
T ss_dssp BHHHHHHTTTCGGGHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHH
Confidence 34689999999999999954
No 11
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=36.89 E-value=28 Score=22.43 Aligned_cols=18 Identities=22% Similarity=0.660 Sum_probs=15.7
Q ss_pred HHHHHHhChhhhHhhhhc
Q psy173 49 AEWLSTAGLSQLSDAYRS 66 (130)
Q Consensus 49 aeWL~dAGLs~L~~~~~~ 66 (130)
++||...||+.....|..
T Consensus 15 ~~WL~~lgL~~Y~~~F~~ 32 (82)
T 1b4f_A 15 DEWLEAIKMGQYKESFAN 32 (82)
T ss_dssp HHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 459999999999999954
No 12
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=35.86 E-value=44 Score=21.53 Aligned_cols=18 Identities=17% Similarity=0.660 Sum_probs=15.7
Q ss_pred HHHHHHhChhhhHhhhhc
Q psy173 49 AEWLSTAGLSQLSDAYRS 66 (130)
Q Consensus 49 aeWL~dAGLs~L~~~~~~ 66 (130)
++||...||+.....|..
T Consensus 11 ~~WL~~lgL~~Y~~~F~~ 28 (81)
T 1ucv_A 11 GDWLDSIRMGRYRDHFAA 28 (81)
T ss_dssp HHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 359999999999999954
No 13
>2hjj_A Hypothetical protein YKFF; northeast structural genomics consortium (NESG), PROT structure initiative., PSI-2, structural genomics, unknown; NMR {Escherichia coli} SCOP: d.50.3.3
Probab=35.48 E-value=15 Score=25.64 Aligned_cols=16 Identities=31% Similarity=0.243 Sum_probs=13.0
Q ss_pred ccCCHHHHHHHHHHHH
Q psy173 80 RHLSSHQAQAVRRRVL 95 (130)
Q Consensus 80 stLTrtQaaAV~rRv~ 95 (130)
.++||.||.||-..+.
T Consensus 10 gpFtReQA~aV~~~Y~ 25 (87)
T 2hjj_A 10 GPFTRRQAQAVTTTYS 25 (87)
T ss_dssp CCCCHHHHHHHHHHCT
T ss_pred CCccHHHHHHHHHHhc
Confidence 3799999999976653
No 14
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=35.39 E-value=32 Score=22.98 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=21.9
Q ss_pred HHHHHHhChhhhHhhhhcCCCCCcchhhHHhccCCHH
Q psy173 49 AEWLSTAGLSQLSDAYRSGLEIPDADLSRALRHLSSH 85 (130)
Q Consensus 49 aeWL~dAGLs~L~~~~~~g~e~~~~d~~~~LstLTrt 85 (130)
.+||...||......|.... + +....|..||..
T Consensus 30 ~eWL~~lgL~qY~~~F~~~g-~---~~le~l~~lt~~ 62 (86)
T 2k4p_A 30 SAWLRAIGLERYEEGLVHNG-W---DDLEFLSDITEE 62 (86)
T ss_dssp HHHHHTTTCGGGHHHHHTTT-C---CCHHHHTTCCHH
T ss_pred HHHHHHCCCHHHHHHHHHcC-C---ChHHHHHhCCHH
Confidence 35999999999999996531 2 222344556654
No 15
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=34.50 E-value=35 Score=23.91 Aligned_cols=40 Identities=10% Similarity=0.286 Sum_probs=30.8
Q ss_pred hhHHHHHHHHhChhhhHhhhhcCCCCCcchhhHHhccCCHHHHHHH
Q psy173 45 GEQEAEWLSTAGLSQLSDAYRSGLEIPDADLSRALRHLSSHQAQAV 90 (130)
Q Consensus 45 GE~EaeWL~dAGLs~L~~~~~~g~e~~~~d~~~~LstLTrtQaaAV 90 (130)
-+.=-++|.++|+ +- .|.+++-...-.+...||..|.+.+
T Consensus 30 q~~FIaFLNElG~-t~-----~G~~~t~~sfr~m~~~lt~~ek~el 69 (90)
T 1jr5_A 30 RANFIAFLNEIGV-TH-----EGRKLNQNSFRKIVSELTQEDKKTL 69 (90)
T ss_dssp HHHHHHHHHHHTC-CS-----SSSCCCSHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHcCC-CC-----CcchhHHHHHHHHHHHCCHHHHHHH
Confidence 3445679999999 33 5888877777788999999887655
No 16
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=34.03 E-value=20 Score=25.16 Aligned_cols=31 Identities=29% Similarity=0.507 Sum_probs=21.3
Q ss_pred chhhHHhcc--CCHHHHHHHHHHHHHHHHHHHhhccccCCC
Q psy173 73 ADLSRALRH--LSSHQAQAVRRRVLSLNHTLRQRGARQLRP 111 (130)
Q Consensus 73 ~d~~~~Lst--LTrtQaaAV~rRv~t~n~TlR~R~k~r~~~ 111 (130)
.|+.-+|+. ||..|.+.|+. +|+|+|||-.|
T Consensus 46 ~efn~ll~~~~Ls~~Ql~lIrd--------iRRRgKNKvAA 78 (91)
T 2kz5_A 46 DDFNELLARYPLTESQLALVRD--------IRRRGKNKVAA 78 (91)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHH--------HHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHH--------HHHHhhhHHHH
Confidence 456666666 99999998875 36666665443
No 17
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=32.82 E-value=1.1e+02 Score=20.43 Aligned_cols=36 Identities=11% Similarity=0.359 Sum_probs=23.5
Q ss_pred HHHHHHHHhChhhhHhhhhcCCCCCcchhhHHhccCCHHH
Q psy173 47 QEAEWLSTAGLSQLSDAYRSGLEIPDADLSRALRHLSSHQ 86 (130)
Q Consensus 47 ~EaeWL~dAGLs~L~~~~~~g~e~~~~d~~~~LstLTrtQ 86 (130)
.=++||..-||+.....|... .+ +....|..||..-
T Consensus 27 ~V~~WL~~lgL~qY~~~F~~~-g~---d~~e~l~~lt~~D 62 (90)
T 3h8m_A 27 SVGEWLQAIKMERYKDNFTAA-GY---NSLESVARMTIED 62 (90)
T ss_dssp SHHHHHHHTTCGGGHHHHHHT-TC---CSHHHHHTCCHHH
T ss_pred HHHHHHHHCChHHHHHHHHHc-CC---ChHHHHhhCCHHH
Confidence 336799999999999999543 22 2223445566443
No 18
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=32.41 E-value=35 Score=22.52 Aligned_cols=35 Identities=17% Similarity=0.381 Sum_probs=23.5
Q ss_pred HHHHHHHhChhhhHhhhhcCCCCCcchhhHHhccCCHHH
Q psy173 48 EAEWLSTAGLSQLSDAYRSGLEIPDADLSRALRHLSSHQ 86 (130)
Q Consensus 48 EaeWL~dAGLs~L~~~~~~g~e~~~~d~~~~LstLTrtQ 86 (130)
=++||..-||+.....|... .+ +....|..||..-
T Consensus 26 V~~WL~~lgL~qY~~~F~~~-g~---~s~e~l~~lt~~D 60 (82)
T 3hil_A 26 VSEWLESIRMKRYILHFHSA-GL---DTMECVLELTAED 60 (82)
T ss_dssp HHHHHHHTTCGGGHHHHHHT-TC---CSGGGGTTCCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHc-CC---ChHHHHhcCCHHH
Confidence 36899999999999999543 22 2223455666543
No 19
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=31.52 E-value=34 Score=22.10 Aligned_cols=19 Identities=16% Similarity=0.625 Sum_probs=16.2
Q ss_pred HHHHHHhChhhhHhhhhcC
Q psy173 49 AEWLSTAGLSQLSDAYRSG 67 (130)
Q Consensus 49 aeWL~dAGLs~L~~~~~~g 67 (130)
++||..-||+.....|...
T Consensus 19 ~~WL~~lgL~~Y~~~F~~~ 37 (83)
T 2qkq_A 19 GEWLRAIKMGRYEESFAAA 37 (83)
T ss_dssp HHHHHHTTCGGGHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHc
Confidence 4599999999999999643
No 20
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=30.69 E-value=35 Score=22.75 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=24.1
Q ss_pred hhHHHHHHHHh-ChhhhHhhhhcCCCCCcchhhHHhccCCHH
Q psy173 45 GEQEAEWLSTA-GLSQLSDAYRSGLEIPDADLSRALRHLSSH 85 (130)
Q Consensus 45 GE~EaeWL~dA-GLs~L~~~~~~g~e~~~~d~~~~LstLTrt 85 (130)
.+.=++||+.. ||+.....|... +| +..+|| .||..
T Consensus 19 ~edV~~wL~~l~gl~~y~~~F~~~-~I---dG~~LL-~Lt~~ 55 (89)
T 1kw4_A 19 VDDVSNFIRELPGCQDYVDDFIQQ-EI---DGQALL-RLKEK 55 (89)
T ss_dssp HHHHHHHHHTSTTCGGGHHHHHHT-TC---CHHHHH-HCCHH
T ss_pred HHHHHHHHHHCcChHHHHHHHHHh-Cc---cHHHHh-cCCHH
Confidence 34457899999 999999999643 33 444444 36554
No 21
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=30.53 E-value=55 Score=21.35 Aligned_cols=34 Identities=12% Similarity=0.391 Sum_probs=22.3
Q ss_pred HHHHHHhChhhhHhhhhcCCCCCcchhhHHhccCCHHH
Q psy173 49 AEWLSTAGLSQLSDAYRSGLEIPDADLSRALRHLSSHQ 86 (130)
Q Consensus 49 aeWL~dAGLs~L~~~~~~g~e~~~~d~~~~LstLTrtQ 86 (130)
++||...||+..+..|... .+ +....|..||..-
T Consensus 20 ~~WL~~lgL~qY~~~F~~~-gi---d~~~~L~~lt~~D 53 (82)
T 2kso_A 20 SEWLESIKMQQYTEHFMAA-GY---TAIEKVVQMTNDD 53 (82)
T ss_dssp HHHHHHTTCTTHHHHHHHT-TC---CSHHHHTTCCHHH
T ss_pred HHHHHHCCCHHHHHHHHHc-CC---ChHHHHHhCCHHH
Confidence 4599999999999999543 22 2223444666543
No 22
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=29.38 E-value=48 Score=21.37 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=14.5
Q ss_pred HHHHHhChhhhHhhhh
Q psy173 50 EWLSTAGLSQLSDAYR 65 (130)
Q Consensus 50 eWL~dAGLs~L~~~~~ 65 (130)
+||...||......|.
T Consensus 17 eWL~~i~L~~Y~~~F~ 32 (78)
T 1v38_A 17 EFLERIHLQEYTSTLL 32 (78)
T ss_dssp HHHHTTTCGGGHHHHH
T ss_pred HHHHHCCCHHHHHHHH
Confidence 4999999999999994
No 23
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.86 E-value=28 Score=22.32 Aligned_cols=18 Identities=28% Similarity=0.667 Sum_probs=15.6
Q ss_pred HHHHHHhChhhhHhhhhc
Q psy173 49 AEWLSTAGLSQLSDAYRS 66 (130)
Q Consensus 49 aeWL~dAGLs~L~~~~~~ 66 (130)
++||...||......|..
T Consensus 16 ~~WL~~lgL~~Y~~~F~~ 33 (80)
T 2eam_A 16 GQWLESIGLPQYENHLMA 33 (80)
T ss_dssp HHHHHHHTCGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 359999999999999954
No 24
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.59 E-value=37 Score=23.44 Aligned_cols=46 Identities=24% Similarity=0.290 Sum_probs=28.3
Q ss_pred hHHHHHHHHhChhh-hHhhhhcCCCCCcchh-----hHHhc---cCCHHHHHHHHHH
Q psy173 46 EQEAEWLSTAGLSQ-LSDAYRSGLEIPDADL-----SRALR---HLSSHQAQAVRRR 93 (130)
Q Consensus 46 E~EaeWL~dAGLs~-L~~~~~~g~e~~~~d~-----~~~Ls---tLTrtQaaAV~rR 93 (130)
+.=+.||+..||++ .+..|.... |+ .++ ..+|+ .||+-|+--|.+=
T Consensus 21 ~EVs~~Lr~igL~e~vv~~F~~e~-ID-G~lL~~L~ee~L~edf~ls~Lq~kKi~~f 75 (84)
T 2dkz_A 21 EEVSKSLRFIGLSEDVISFFVTEK-ID-GNLLVQLTEEILSEDFKLSKLQVKKIMQF 75 (84)
T ss_dssp HHHHHHGGGTCCCHHHHHHHHTTT-CC-HHHHHHCCHHHHHHTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHc-cc-hHHHHhCCHHHHHhhcCCCHHHHHHHHHH
Confidence 44578999999996 678886542 31 111 11232 4777787666553
No 25
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=26.47 E-value=72 Score=22.95 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=24.2
Q ss_pred HHHHHHHHhChhhhHhhhhcCCCCCcchhhHHhccCCHHHH
Q psy173 47 QEAEWLSTAGLSQLSDAYRSGLEIPDADLSRALRHLSSHQA 87 (130)
Q Consensus 47 ~EaeWL~dAGLs~L~~~~~~g~e~~~~d~~~~LstLTrtQa 87 (130)
.=.+||.+-||+.-...|... .+ +....|..||...-
T Consensus 81 ~v~~WL~~igL~qY~~~F~~~-g~---d~~~~l~~lt~~dL 117 (149)
T 3sei_A 81 NLAVWLSMIGLAQYYKVLVDN-GY---ENIDFITDITWEDL 117 (149)
T ss_dssp CHHHHHHHTTCGGGHHHHHHT-TC---CSHHHHTTCCHHHH
T ss_pred cHHHHHHHcCchhhHHHHHHC-CC---chHHHHhhCCHHHH
Confidence 346899999999999999643 22 22334555665433
No 26
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=25.91 E-value=51 Score=21.89 Aligned_cols=34 Identities=12% Similarity=0.391 Sum_probs=23.0
Q ss_pred HHHHHHhChhhhHhhhhcCCCCCcchhhHHhccCCHHH
Q psy173 49 AEWLSTAGLSQLSDAYRSGLEIPDADLSRALRHLSSHQ 86 (130)
Q Consensus 49 aeWL~dAGLs~L~~~~~~g~e~~~~d~~~~LstLTrtQ 86 (130)
++||..-||+.....|... .+ +....|..||..-
T Consensus 25 ~~WL~~lgL~qY~~~F~~~-g~---d~le~l~~lt~~D 58 (86)
T 3kka_C 25 SEWLESIKMQQYTEHFMAA-GY---TAIEKVVQMTNDD 58 (86)
T ss_dssp HHHHHHTTCGGGHHHHHHT-TC---CSHHHHHTCCHHH
T ss_pred HHHHHhCCcHHHHHHHHHc-CC---ChHHHHHhCCHHH
Confidence 5799999999999999643 22 2223455666543
No 27
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=24.46 E-value=41 Score=22.70 Aligned_cols=21 Identities=5% Similarity=0.210 Sum_probs=17.1
Q ss_pred ccccHHHHHHHHHHHHHhhcc
Q psy173 7 QDQDFQDYWNEYRILQETKRL 27 (130)
Q Consensus 7 ~~~~m~dyW~Eve~I~~s~~~ 27 (130)
.+..|++|+.+|+.|+..-..
T Consensus 3 ~~~~m~~F~~~v~~I~~~i~~ 23 (127)
T 1ez3_A 3 RDRFMDEFFEQVEEIRGFIDK 23 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHH
Confidence 346799999999999988543
No 28
>1imu_A Hypothetical protein HI0257; dsRNA binding protein, proteome, solution structure, ribosome, structure 2 function project, S2F; NMR {Haemophilus influenzae} SCOP: d.204.1.1
Probab=23.74 E-value=1e+02 Score=20.69 Aligned_cols=39 Identities=10% Similarity=0.215 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCccccccc
Q psy173 84 SHQAQAVRRRVLSLNHTLRQRGARQLRPKNRKPDIRHVFK 123 (130)
Q Consensus 84 rtQaaAV~rRv~t~n~TlR~R~k~r~~~k~~~pDvRDIF~ 123 (130)
..=.+||-.=++.|-+-|||.+.+. +.++..|.++|-|.
T Consensus 68 ~d~y~AiD~a~dkLerqLrk~k~K~-~~~~~~~~~~~~~~ 106 (107)
T 1imu_A 68 DDMYKAINEVEEKLERQLNKLQHKS-ESRRADERLKDSFE 106 (107)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCC-SCCSSCCCSCCSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCchhhhcc
Confidence 3446777777778888777755432 33455688888874
No 29
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.22 E-value=67 Score=21.47 Aligned_cols=18 Identities=28% Similarity=0.667 Sum_probs=15.6
Q ss_pred HHHHHHhChhhhHhhhhc
Q psy173 49 AEWLSTAGLSQLSDAYRS 66 (130)
Q Consensus 49 aeWL~dAGLs~L~~~~~~ 66 (130)
++||...||...+..|..
T Consensus 26 ~~WL~~lgL~~Y~~~F~~ 43 (99)
T 2eao_A 26 DDWLSAIKMVQYRDSFLT 43 (99)
T ss_dssp HHHHHTTTCGGGHHHHHH
T ss_pred HHHHHHCCcHHHHHHHHH
Confidence 459999999999999954
No 30
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=22.00 E-value=81 Score=22.44 Aligned_cols=18 Identities=28% Similarity=0.667 Sum_probs=15.5
Q ss_pred HHHHHHhChhhhHhhhhc
Q psy173 49 AEWLSTAGLSQLSDAYRS 66 (130)
Q Consensus 49 aeWL~dAGLs~L~~~~~~ 66 (130)
++||.+.||+.....|..
T Consensus 18 ~~WL~~igL~~Y~~~F~~ 35 (148)
T 2kiv_A 18 GQWLESIGLPQYENHLMA 35 (148)
T ss_dssp HHHHHHHSCTTSHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 459999999999999954
No 31
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=21.57 E-value=1.1e+02 Score=20.10 Aligned_cols=18 Identities=17% Similarity=0.660 Sum_probs=15.8
Q ss_pred HHHHHHhChhhhHhhhhc
Q psy173 49 AEWLSTAGLSQLSDAYRS 66 (130)
Q Consensus 49 aeWL~dAGLs~L~~~~~~ 66 (130)
++||...||......|..
T Consensus 30 ~~WL~~lgL~~Y~~~F~~ 47 (94)
T 1b0x_A 30 GDWLQAIKMDRYKDNFTA 47 (94)
T ss_dssp HHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHCCcHHHHHHHHH
Confidence 459999999999999954
Done!