RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy173
(130 letters)
>gnl|CDD|180433 PRK06157, PRK06157, acetyl-CoA acetyltransferase; Validated.
Length = 398
Score = 30.0 bits (68), Expect = 0.28
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 55 AGLSQLSDAYRSGLEIPDADLSRALRHLS--SH 85
+QL+ AY + + DL RA+ H+S SH
Sbjct: 146 GNFAQLASAYAAKYGVSREDLKRAMAHVSVKSH 178
>gnl|CDD|221035 pfam11225, DUF3024, Protein of unknown function (DUF3024). This
family of proteins has no known function.
Length = 57
Score = 27.3 bits (61), Expect = 0.59
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 9 QDFQDYWNEYRILQETKRLDEFLDEQEE 36
D W+ Y L E+K L+ L+E EE
Sbjct: 23 MDHDLKWHPYEPLPESKDLEALLEELEE 50
>gnl|CDD|218645 pfam05577, Peptidase_S28, Serine carboxypeptidase S28. These
serine proteases include several eukaryotic enzymes
such as lysosomal Pro-X carboxypeptidase,
dipeptidyl-peptidase II, and thymus-specific serine
peptidase.
Length = 433
Score = 28.5 bits (64), Expect = 0.90
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 44 EGEQEAEWLSTAGLSQLSDAYRS----------GLEIPDADLSRA-LRHLSSHQAQA 89
EG + A W+ L+ + + G P DLS A LR+LSS QA A
Sbjct: 38 EGPESASWVRNGHWLDLAKEFGALVFSLEHRFYGQSKPIGDLSTANLRYLSSLQALA 94
>gnl|CDD|185053 PRK15098, PRK15098, beta-D-glucoside glucohydrolase; Provisional.
Length = 765
Score = 28.1 bits (63), Expect = 1.6
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 16/86 (18%)
Query: 3 ADVSQDQDFQDYWNEY--RILQETKRLDEFLDEQEEAARQ----LEDEGEQEAEWLSTAG 56
A+V+ D+ D+ N+Y + + + +DE +AA+Q + GE G
Sbjct: 462 ANVTDDKGIIDFLNQYEEAVKVDPRSPQAMIDEAVQAAKQADVVVAVVGE-------AQG 514
Query: 57 LSQLSDAYRSGLEIPDA--DLSRALR 80
++ + + R+ + IP + DL AL+
Sbjct: 515 MAHEASS-RTDITIPQSQRDLIAALK 539
>gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 699
Score = 27.8 bits (61), Expect = 2.2
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 13 DYWNEYRILQETKRLDEFLDEQEEAARQL-----EDEGEQEAEWL----STAGLSQLSDA 63
D W Y+I Q + L +D E+ + +D G + + ST L ++ D
Sbjct: 23 DEWEHYKIFQNSCNLRNKIDTNEKGKNGINQSVDDDNGSSGVDIIALHESTLWLIEIKDY 82
Query: 64 YRSGLEIPDADLSRALRHLSSHQAQAVRRRVLSL 97
YR GLE + L L A+ +R + L
Sbjct: 83 YRLGLEPNAQSIDEKLSDLPYLIARKIRDSLAGL 116
>gnl|CDD|221073 pfam11311, DUF3114, Protein of unknown function (DUF3114). Some
members in this family of proteins with unknown function
are annotated as cytosolic proteins. This cannot be
confirmed.
Length = 252
Score = 27.4 bits (61), Expect = 2.3
Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 21/139 (15%)
Query: 8 DQDFQDYWNEYRILQETKRLDEFLDEQEEAARQLEDEGEQEAE---------------WL 52
FQ W + Q+ ++L + L E +L E ++ W
Sbjct: 3 SPAFQKLWQAEKGRQQPQKLLKLLLAYLEMPEELSGELDETQFLLARFSPDLAPHDPFWK 62
Query: 53 STAGLSQLSDAYRSGLEIPDADLSRALRHL----SSHQAQAVRRRVLSLNHTLRQRGARQ 108
A L QL A+ +++L++ + SS QAQ VR T Q A+
Sbjct: 63 DFAQLVQL--AFPGDDLSQESELAKRIHQFRYLISSQQAQYVRDHFKQEGMTDAQALAKY 120
Query: 109 LRPKNRKPDIRHVFKDVER 127
LR +P + + R
Sbjct: 121 LRSLAWRPADDYTLYESAR 139
>gnl|CDD|220191 pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for
Clustered, Regularly Interspaced Short Palidromic
Repeats. A number of protein families appear only in
association with these repeats and are designated Cas
(CRISPR-Associated) proteins. This family is represented
by CT1975 of Chlorobium tepidum.
Length = 353
Score = 27.3 bits (61), Expect = 2.6
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 24 TKRLDEFLDEQEEAARQLEDEGEQEAEWLSTAGLSQLSDAYRSGLEIPDADLSRALRHLS 83
TKRL E + ++ E A E+ + AE + A +L +S E + L LS
Sbjct: 61 TKRLAEEVAKRLEQAGVEEELAKALAEKILGAFGKKLKKGKKSKKE------TEQLLFLS 114
Query: 84 SHQAQAVRRRVLSLNHTLRQ-RGARQLRPKNRKPDI 118
+ A+ + L+ + +LR K + DI
Sbjct: 115 PEEIAALAQLAEEHAEDLKAAKKEEKLRKKAKAVDI 150
>gnl|CDD|188937 cd09538, SAM_DLC1,2-like, SAM domain of DLC1,2-like subfamily.
SAM (sterile alpha motif) domain of DLC-1,2-like
(Deleted in liver cancer) subfamily is a
protein-protein interaction domain located at the
N-terminus of the protein. Members of this subfamily do
not form dimers/oligomers through their SAM domains.
They participate in regulation of cell migration and
lipid transfer. SAM domain of human DLC1 protein
contains the EF1A1 (eukaryotic elongation factor)
binding motif, thus SAM facilitates recruitment of
EF1A1 to the membrane periphery and suppresses cell
migration. Human Dlc2 gene is known as a tumor
suppressor gene. It was found underexpressed in
hepatocellular carcinoma.
Length = 60
Score = 25.5 bits (56), Expect = 3.2
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 50 EWLSTAGLSQLSDAYRSGL-EIPDADLSRALRHLSSHQAQAVRRRVLSLN 98
+WL AG Q + Y I + + R L QA+ RR+ +LN
Sbjct: 5 KWLRAAGFPQYAQLYEDSQFPIDISAVKRDHDFLDRDSLQALIRRLNTLN 54
>gnl|CDD|222700 pfam14348, DUF4400, Domain of unknown function (DUF4400). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 209 and 249 amino
acids in length. There is a single completely conserved
residue P that may be functionally important.
Length = 189
Score = 26.5 bits (59), Expect = 4.0
Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 17/91 (18%)
Query: 30 FLDEQEEAARQLEDEGEQEAEWLSTAGL-----------------SQLSDAYRSGLEIPD 72
+E R + E E E L + L ++ L+
Sbjct: 4 AFFWPDEGFRHSQAEVESELGVLGEDFTRSVLARAPAAYQWLFVDTGLVAWLQNYLQQAT 63
Query: 73 ADLSRALRHLSSHQAQAVRRRVLSLNHTLRQ 103
+ +R L + + A +R +L+ L
Sbjct: 64 SGSARGLNYAAEWLATFLRSYLLAFWLVLYV 94
>gnl|CDD|163535 TIGR03823, FliZ, flagellar regulatory protein FliZ. FliZ is
involved in the regulation of flagellar assembly and
possibly also the down-regulation of the motile
phenotype. FliZ interacts with the flagellar
translational activator FlhCD complex.
Length = 168
Score = 26.3 bits (58), Expect = 4.6
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 25 KRLDEFLDEQEEAARQLEDEGEQE--AEWLSTAGLSQLSDAYR 65
+RLDE L Q A Q +D QE A+WL + + A R
Sbjct: 115 RRLDELLVAQNYPAEQFQDGFLQERLADWLPSTATNNYRIALR 157
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase. Allophanate
hydrolase catalyzes the second reaction in an
ATP-dependent two-step degradation of urea to ammonia
and C02, following the action of the biotin-containing
urea carboxylase. The yeast enzyme, a fusion of
allophanate hydrolase to urea carboxylase, is designated
urea amidolyase [Central intermediary metabolism,
Nitrogen metabolism].
Length = 561
Score = 26.5 bits (59), Expect = 4.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 95 LSLNHTLRQRGARQLRPKNRKPDIR 119
+ LN L +RGAR LR PD R
Sbjct: 449 MPLNWQLTERGARLLRTTRTAPDYR 473
>gnl|CDD|221025 pfam11202, DUF2983, Protein of unknown function (DUF2983). This
bacterial family of proteins has no known function.
Length = 353
Score = 26.4 bits (59), Expect = 5.6
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 18 YRILQETKRLDEFLDEQEEAARQLEDEGEQEAEWLSTAGLSQLSDAYRS 66
Y L E +EF+D + +QL E E A W + +
Sbjct: 231 YDHLAEHDVSNEFVDTIDACFKQLAPEVENAAPWDLSQRRAPTWQGRAV 279
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional.
Length = 600
Score = 26.3 bits (59), Expect = 5.7
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 97 LNHTLRQRGARQLRPKNRKPDIR 119
LNH L RGAR L PD R
Sbjct: 486 LNHQLTSRGARLLEATTTAPDYR 508
>gnl|CDD|217618 pfam03568, Peptidase_C50, Peptidase family C50.
Length = 382
Score = 25.8 bits (57), Expect = 7.6
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 17/101 (16%)
Query: 8 DQDFQDYWNEYRILQETKRLDEFLDEQEEAARQLEDEGEQEAEWLSTAG--LSQLSDAYR 65
+D + +W E L +RL + L EE+ WL L +
Sbjct: 63 KEDKRKWWKERYALD--RRLKKLLANIEES-------------WLGPFKGLLLPKRYDKK 107
Query: 66 SGLEIPDADLSRALRHLSSHQAQAVRRRVLSLNHTLRQRGA 106
S + A + L S + V R +L L L G
Sbjct: 108 SFEKFASAFYNILDNGLPSRKWLTVDRVLLELFLGLDYEGY 148
>gnl|CDD|215385 PLN02726, PLN02726, dolichyl-phosphate beta-D-mannosyltransferase.
Length = 243
Score = 25.4 bits (56), Expect = 9.6
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 32 DEQEEAARQLEDE-GEQEAEWLSTAGLSQLSDAYRSGLE--------IPDADLSRALRHL 82
D ++ +QL+ GE G L AY GL+ I DADLS ++L
Sbjct: 52 DGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHASGDFVVIMDADLSHHPKYL 111
Query: 83 SS 84
S
Sbjct: 112 PS 113
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.129 0.363
Gapped
Lambda K H
0.267 0.0827 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,858,321
Number of extensions: 627283
Number of successful extensions: 1123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1116
Number of HSP's successfully gapped: 122
Length of query: 130
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 44
Effective length of database: 7,123,158
Effective search space: 313418952
Effective search space used: 313418952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.0 bits)