RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy173
(130 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 2e-04
Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 44/117 (37%)
Query: 12 QDYWNEYRILQETKR--LDEFLDEQEEAARQLEDEGEQEAE-------------WLSTA- 55
DY+ E R L +T + + + + +A L + + WL
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLI---KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 56 ------------------GLSQLS----DAYRSGLEIPDADLSRALRHLSSHQAQAV 90
G+ QL+ A G P +L L+ + H +Q +
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT-P-GELRSYLKGATGH-SQGL 277
Score = 37.7 bits (87), Expect = 6e-04
Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 30/102 (29%)
Query: 42 EDEGEQEAEW-LSTAGLSQLSDAYRSGLEIPDADLSRALRHLSSHQAQAV------RRRV 94
+ E LS + L+ + ++ +++ HL + + + + V
Sbjct: 328 LENNEGVPSPMLSISNLT------QEQVQ---DYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 95 LS--------LNHTLR----QRGARQLR-P-KNRKPDIRHVF 122
+S LN TLR G Q R P RK + F
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Score = 30.0 bits (67), Expect = 0.19
Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 40/118 (33%)
Query: 45 GEQEAEWLSTAGL----SQLSDAYRSGLEIPDAD-------------LSRALRHLSSH-- 85
G E L SQL + + L P + + L ++SS
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 86 -QAQAVRRRVL--SLN------------HTLRQRGARQLRPKNRKPDIRHVFKDVERS 128
+VL L H L A +L +N ++ K++ ++
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGNDIHAL----AAKLLQENDTTLVKT--KELIKN 125
Score = 26.9 bits (59), Expect = 2.2
Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 29/120 (24%)
Query: 3 ADVSQDQDFQDYWNEYRILQE-TKRL---DEFLDEQEEAAR-------QLEDEGEQEAEW 51
A Q+Q F IL E T+ DE E + +E + +
Sbjct: 30 ASQLQEQ-FNK------ILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ 82
Query: 52 LSTAGLSQLSDAYRSGLEI----------PDADLSRALRHLSSH-QAQAVRRRVLSLNHT 100
+ L++ + Y G +I D L + + ++ A+ + +R
Sbjct: 83 VLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.011
Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 28/131 (21%)
Query: 2 EADVSQDQDFQDYWNEYR----------ILQE------TKRL-DEFLDEQEEAARQ-LED 43
E + D +D + + I+ T RL L +QEE ++ +E+
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 44 EGEQEAEWLSTAGLSQLSDAYRSGLEIPDADLSRALRHLSSHQAQA---VRRRVLSLNHT 100
++L +S + R + + + R + +Q A V R L
Sbjct: 86 VLRINYKFL----MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR--LQPYLK 139
Query: 101 LRQRGARQLRP 111
LRQ +LRP
Sbjct: 140 LRQ-ALLELRP 149
Score = 27.1 bits (59), Expect = 2.3
Identities = 21/153 (13%), Positives = 42/153 (27%), Gaps = 45/153 (29%)
Query: 13 DYWNEYRILQETKRLDEFLDEQEEA-ARQL--------------------------EDEG 45
D W + T ++ L+ E A R++ + +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 46 EQEAEWLSTAGLSQLSDAYRSGLEIPDADLSRALRHLSSHQAQAVRRRVLSLNHTLRQRG 105
L L + S + IP + L+ ++ A+ R ++
Sbjct: 405 MVVVNKLHKYSLVE-KQPKESTISIP--SIYLELKVKLENE-YALHRSIVD-----HYNI 455
Query: 106 ARQLRPKNRKPD---------IRHVFKDVERSE 129
+ + P I H K++E E
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid
binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB:
2jw2_A
Length = 81
Score = 28.5 bits (63), Expect = 0.22
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 42 EDEGEQEAEWLSTAGLSQLSDAYRSGL-EIPDADLSRALRHLSSHQAQAVRRRVLSLN 98
E E ++ +WL AG Q + Y I + L + + RR+ +LN
Sbjct: 18 EIEAKEACDWLRAAGFPQYAQLYEDSQFPINIVAVKNDHDFLEKDLVEPLCRRLNTLN 75
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle,
oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus}
SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Length = 661
Score = 28.3 bits (63), Expect = 0.86
Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 15/108 (13%)
Query: 1 MEADVSQDQDFQDYWNE---YRILQETKRLDEFLDEQ-EEAARQLEDEGEQEAEWLSTAG 56
++ VS + + WN + + + + +++D+ Q
Sbjct: 502 LQTHVSHRKSKEVAWNLTSVDLVRASEAHCHYVVVKVFSDKLPKIQDKAVQAV------- 554
Query: 57 LSQLSDAYRSGLEIPDADLSRALRH--LSSHQAQAVRRRVLSLNHTLR 102
L L Y L L ++ Q V R+L L +R
Sbjct: 555 LRNLCLLY--SLYGISQKGGDFLEGSIITGAQLSQVNARILELLTLIR 600
>3bjr_A Putative carboxylesterase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.09A {Lactobacillus plantarum WCFS1}
Length = 283
Score = 27.5 bits (61), Expect = 1.1
Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 6/50 (12%)
Query: 42 EDEGEQEAEWLSTAGLS------QLSDAYRSGLEIPDADLSRALRHLSSH 85
+ E A + G L + P DL RA+ L H
Sbjct: 66 VAQAESLAMAFAGHGYQAFYLEYTLLTDQQPLGLAPVLDLGRAVNLLRQH 115
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 26.4 bits (59), Expect = 3.2
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 3/97 (3%)
Query: 36 EAARQLEDEGEQEAE--WLSTAGLSQLSDAYRSGLEIPDADLSRALRHLSSHQAQAVRRR 93
EAA++LE++G + + +SD +E L R + ++AV+
Sbjct: 1128 EAAKKLEEQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNRDNEALNSEAVKHG 1187
Query: 94 VLSLNHTLRQRGARQLRPKNRKPDIRHVFKDVERSEG 130
+ H + K DI + +
Sbjct: 1188 LKQKTHAFYSYYVNLISTGQVKADI-DLLTSGADFDI 1223
>1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide
synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A
{Bacillus subtilis} SCOP: c.69.1.22
Length = 230
Score = 25.5 bits (56), Expect = 5.3
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 36 EAARQLEDEGEQEAEWLSTAGLSQLSDAYRSGL--EIPDADLSRALRHLSSHQAQAVRRR 93
EAA++LE +G + + + D+Y+ ++ + + L +
Sbjct: 87 EAAKKLEGQGR-IVQRII------MVDSYKKQGVSDLDGRTVESDVEALMNVNRDNEALN 139
Query: 94 VLSLNHTLRQRGARQLRPKNRKPDIRHV 121
++ H L+Q+ V
Sbjct: 140 SEAVKHGLKQKTHAFYSYYVNLISTGQV 167
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET:
PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A
{Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1
d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Length = 607
Score = 25.3 bits (56), Expect = 8.0
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 23 ETKRLDEFLDEQEEAARQLEDEGEQE 48
LD L+E +E ++ + E +
Sbjct: 414 TVVFLDNILEETKEKMHEVMKKNENK 439
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 24.7 bits (53), Expect = 8.6
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 19 RILQETKRLDEFLDEQEEAARQLEDEGE-QEAEWLSTAGLSQLSDAYR 65
R+ QE + + ++ +EQ + ++L+ + E EW A L + +
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAK-KDLEEWNQ 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.363
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,018,070
Number of extensions: 112868
Number of successful extensions: 414
Number of sequences better than 10.0: 1
Number of HSP's gapped: 408
Number of HSP's successfully gapped: 55
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.2 bits)