RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy173
         (130 letters)



>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
          {Thermotoga maritima [TaxId: 2336]}
          Length = 333

 Score = 27.8 bits (61), Expect = 0.41
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 4  DVSQDQDFQDYWNEYRILQETKRLDEFLDEQEEAARQLEDEGEQEAE 50
          D++ +Q  ++Y  EY  ++E + +   + E +E    L +EGE E E
Sbjct: 16 DLTPEQ-MKNYGMEYAKIEEIENITNRIKETQEFIELLREEGENELE 61


>d2oqza1 b.100.1.1 (A:35-253) Hypothetical protein BA4783
          {Bacillus anthracis [TaxId: 1392]}
          Length = 219

 Score = 27.3 bits (60), Expect = 0.58
 Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 11 FQDYWNEYRILQETKRLDEFLDEQEEAARQLEDEGEQEAEWLSTAGLSQLSDAYRSGLEI 70
          F DY+   +++ E + + E    +E+       +GE   ++     L Q++      + +
Sbjct: 2  FMDYYENRKVMAEAQNIYEKSPMEEQ-----SQDGEVRKQF---KALQQINQEIVGWITM 53

Query: 71 PDADLS 76
           D  ++
Sbjct: 54 DDTQIN 59


>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 348

 Score = 24.5 bits (52), Expect = 4.7
 Identities = 6/28 (21%), Positives = 12/28 (42%)

Query: 21  LQETKRLDEFLDEQEEAARQLEDEGEQE 48
                 LD  L+E +E   ++  + E +
Sbjct: 277 KGTVVFLDNILEETKEKMHEVMKKNENK 304


>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545,
          C-terminal domain {Sulfolobus solfataricus [TaxId:
          2287]}
          Length = 73

 Score = 23.1 bits (50), Expect = 5.3
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 65 RSGLEIPDADLSRALRHL 82
            G+EI D+++   L  L
Sbjct: 31 EEGIEISDSEIYNYLTQL 48


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 23.9 bits (51), Expect = 7.5
 Identities = 8/41 (19%), Positives = 16/41 (39%)

Query: 11  FQDYWNEYRILQETKRLDEFLDEQEEAARQLEDEGEQEAEW 51
           + ++   Y IL        F+D +  + + L       AE+
Sbjct: 665 YSEFKQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEY 705


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 23.9 bits (51), Expect = 7.7
 Identities = 7/41 (17%), Positives = 15/41 (36%)

Query: 11  FQDYWNEYRILQETKRLDEFLDEQEEAARQLEDEGEQEAEW 51
           FQ++   Y IL        F+D ++     ++        +
Sbjct: 648 FQEFRQRYEILAANAIPKGFMDGKQACILMIKALELDPNLY 688


>d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 203

 Score = 23.5 bits (49), Expect = 8.6
 Identities = 7/43 (16%), Positives = 16/43 (37%)

Query: 43  DEGEQEAEWLSTAGLSQLSDAYRSGLEIPDADLSRALRHLSSH 85
              +   E L   G +  +  +  G EI   ++      L+++
Sbjct: 160 QLTKALEESLKAQGGTVETVWHPGGHEIRSGEIDAVRGFLAAY 202


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.129    0.363 

Gapped
Lambda     K      H
   0.267   0.0398    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 468,820
Number of extensions: 19569
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 39
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)