BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17300
(152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 57.0 bits (136), Expect = 4e-09, Method: Composition-based stats.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 3 ASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTG---VEFRNPQGK-TIKVNANREV 58
+S+ +LR + + + V N++VTKL T + VE+ +G T V A +EV
Sbjct: 209 SSTAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEV 268
Query: 59 VLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 103
VL+A S+ + +LQ SG+GD LS I + N P VG+ LS H
Sbjct: 269 VLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDH 313
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 52.8 bits (125), Expect = 7e-08, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 3 ASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ-GKTIKVNANREVVLA 61
+S ++ I ++ + +L FD + + TGV+ + G T ++ A EVVL+
Sbjct: 210 SSVSYIHPIVEQENFTLLTGLRARQLVFDADR-RCTGVDIVDSAFGHTHRLTARNEVVLS 268
Query: 62 ANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHP 104
+I++ ++L SG+G AA L+++ I ++ + PGVG+ L HP
Sbjct: 269 TGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHP 311
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 52.8 bits (125), Expect = 7e-08, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 3 ASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ-GKTIKVNANREVVLA 61
+S ++ I ++ + +L FD + + TGV+ + G T ++ A EVVL+
Sbjct: 210 SSVSYIHPIVEQENFTLLTGLRARQLVFDADR-RCTGVDIVDSAFGHTHRLTARNEVVLS 268
Query: 62 ANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHP 104
+I++ ++L SG+G AA L+++ I ++ + PGVG+ L HP
Sbjct: 269 TGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHP 311
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 52.8 bits (125), Expect = 7e-08, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 3 ASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ-GKTIKVNANREVVLA 61
+S ++ I ++ + +L FD + + TGV+ + G T ++ A EVVL+
Sbjct: 210 SSVSYIHPIVEQENFTLLTGLRARQLVFDADR-RCTGVDIVDSAFGHTHRLTARNEVVLS 268
Query: 62 ANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHP 104
+I++ ++L SG+G AA L+++ I ++ + PGVG+ L HP
Sbjct: 269 TGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHP 311
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 50.8 bits (120), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 13 DKNTVQVSKNSEVTKLCFDETKTKVT--GVEFRNPQGKTIK--VNANREVVLAANSINSV 68
D N ++V+ ++ V K+ F + VT GV +++ G + V EV+++A I S
Sbjct: 205 DPNNLRVAVHASVEKIIFSSNSSGVTAIGVIYKDSNGTPHQAFVRGEGEVIVSAGPIGSP 264
Query: 69 RILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFF 107
++L SGVG + LS NIP+V + P VG+ L +P F
Sbjct: 265 QLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNF 303
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 13 DKNTVQVSKNSEVTKLCFDETKT-KVTGVEFRNPQGKTIK--VNANREVVLAANSINSVR 69
+ N ++V ++ V K+ F TGV +R+ G + V + EV+++A +I + +
Sbjct: 205 NSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQ 264
Query: 70 ILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFF 107
+L SGVG + LS NIP+V + P VG+ L +P F
Sbjct: 265 LLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNF 302
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 13 DKNTVQVSKNSEVTKLCFDETKT-KVTGVEFRNPQGKTIK--VNANREVVLAANSINSVR 69
+ N ++V ++ V K+ F TGV +R+ G + V + EV+++A +I + +
Sbjct: 205 NSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQ 264
Query: 70 ILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFF 107
+L SGVG + LS NIP+V + P VG+ L +P F
Sbjct: 265 LLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNF 302
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 45.1 bits (105), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 14 KNTVQVSKNSEVTKLCFDETKT--KVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71
+ +QV V K+ + T + GVEF +G T V A EV+LAA S S IL
Sbjct: 239 RPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTIL 298
Query: 72 QQSGVGDAALLSKYNIPLVKNLP 94
+ SG+G ++L I V +LP
Sbjct: 299 EYSGIGMKSILEPLGIDTVVDLP 321
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 42.7 bits (99), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 43/94 (45%)
Query: 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 70
+K+K + + +L +E GV G + A+REV+L+ + ++
Sbjct: 215 VKNKPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKL 274
Query: 71 LQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHP 104
L SG+G LS++ I + + VG+ L HP
Sbjct: 275 LMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHP 308
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 40.0 bits (92), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 14 KNTVQVSKNSEVTKLCFDETKT--KVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71
++ +++ V K+ F +T + + GV F + V A EV+LAA S S IL
Sbjct: 243 RSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLIL 302
Query: 72 QQSGVGDAALLSKYNIPLVKNLP 94
+ SG+G ++L + N+ + +LP
Sbjct: 303 EYSGIGLKSVLDQANVTQLLDLP 325
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 35.0 bits (79), Expect = 0.019, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 3 ASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAA 62
A + +A++ + + + S V +L + +V +E QG + +V A+ ++VL A
Sbjct: 212 ADAWLTKAVRGRKNLTILTGSRVRRLKLE--GNQVRSLEVVGRQG-SAEVFAD-QIVLCA 267
Query: 63 NSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPV 118
++ S +L +SG+G +L + + ++P +G+ L H + G Y + PV
Sbjct: 268 GALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYA-ARKPV 322
>pdb|1FHL|A Chain A, Crystal Structure Of Beta-1,4-Galactanase From Aspergillus
Aculeatus At 293k
pdb|1FOB|A Chain A, Crystal Structure Of Beta-1,4-Galactanase From Aspergillus
Aculeatus At 100k
Length = 334
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 39 GVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGK 98
G ++N G+T + E +LA INS+R D + YN+ L K + G
Sbjct: 19 GYSYKNLNGQTQAL----ETILADAGINSIRQRVWVNPSDGSYDLDYNLELAKRVKAAGM 74
Query: 99 RLSL 102
L L
Sbjct: 75 SLYL 78
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 27.3 bits (59), Expect = 3.8, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 35 TKVTGVEFRNPQ---GKTIKVNANREVVLAANSINSVRILQQSGVGDAALL 82
+++ GV+ +P I V V+L+A + + RIL QSG+G ++
Sbjct: 222 SQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMI 272
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 27.3 bits (59), Expect = 3.9, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 35 TKVTGVEFRNPQ---GKTIKVNANREVVLAANSINSVRILQQSGVGDAALL 82
+++ GV+ +P I V V+L+A + + RIL QSG+G ++
Sbjct: 227 SQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMI 277
>pdb|1DOQ|A Chain A, The C-Terminal Domain Of The Rna Polymerase Alpha
Subunit From Thermus Thermophilus
Length = 69
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 71 LQQSGVGDAALLSKYNIPLVKNLPGVGKR 99
L++ G+ L N+ +KN+PG+G+R
Sbjct: 23 LKEEGIESVRALLALNLKDLKNIPGIGER 51
>pdb|2J6E|A Chain A, Crystal Structure Of An Autoimmune Complex Between A
Human Igm Rheumatoid Factor And Igg1 Fc Reveals A Novel
Fc Epitope And Evidence For Affinity Maturation
pdb|2J6E|B Chain B, Crystal Structure Of An Autoimmune Complex Between A
Human Igm Rheumatoid Factor And Igg1 Fc Reveals A Novel
Fc Epitope And Evidence For Affinity Maturation
Length = 232
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 3 ASSIFLRAIKDKNTVQVSKNSEVTKLCFD----ETKTK----VTGVEFRNPQGK 48
S+FL K K+T+ +S+ EVT + D E + K V GVE N + K
Sbjct: 22 GPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEEPEVKFNWYVDGVEVHNAKTK 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,363,084
Number of Sequences: 62578
Number of extensions: 118422
Number of successful extensions: 353
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 25
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)