BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17300
(152 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 40/105 (38%), Positives = 57/105 (54%)
Query: 3 ASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAA 62
++ FLR + +N + + N+ TK+ V GVE + G T K+ +EVVL+A
Sbjct: 261 SARAFLRPARMRNNLHILLNTTATKILIHPHTKNVLGVEVSDQFGSTRKILVKKEVVLSA 320
Query: 63 NSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFF 107
++NS IL SGVG L + N+ V NLPGVGK L H +F
Sbjct: 321 GAVNSPHILLLSGVGPKDELQQVNVRTVHNLPGVGKNLHNHVTYF 365
>sp|B1LIJ7|BETA_ECOSM Choline dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC)
GN=betA PE=3 SV=1
Length = 562
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT-IKVNANREVVLAANSI 65
+L K ++ + + ++ + FD + GVE+ + AN+EV+L A +I
Sbjct: 204 YLDQAKSRSNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRAAANKEVLLCAGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H + L Y K PVS Y
Sbjct: 262 ASPQILQRSGVGNAGLLAEFDIPLVHELPGVGENLQDHLEMY-LQYE-CKEPVSLY 315
>sp|A7MFA8|BETA_CROS8 Choline dehydrogenase OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=betA PE=3 SV=1
Length = 559
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 69/116 (59%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIK-VNANREVVLAANSI 65
+L K + +++ ++ ++ F+ + GV + + T + V+A REV+L A +I
Sbjct: 204 YLDTAKQRPNLKIITHATTDRILFENKRA--VGVAYLHGASNTPQEVHARREVLLCAGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG+A LL +++IP+V +LPGVG+ L H + L Y K PVS Y
Sbjct: 262 ASPQILQRSGVGNAELLKQFDIPVVHDLPGVGENLQDHLEMY-LQYE-CKEPVSLY 315
>sp|Q0T7N0|BETA_SHIF8 Choline dehydrogenase OS=Shigella flexneri serotype 5b (strain
8401) GN=betA PE=3 SV=1
Length = 556
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT-IKVNANREVVLAANSI 65
+L K + + + ++ + FD + GVE+ + AN+EV+L A +I
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRATANKEVLLCAGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H + L Y K PVS Y
Sbjct: 262 ASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMY-LQYE-CKEPVSLY 315
>sp|B6I074|BETA_ECOSE Choline dehydrogenase OS=Escherichia coli (strain SE11) GN=betA
PE=3 SV=1
Length = 556
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT-IKVNANREVVLAANSI 65
+L K + + + ++ + FD + GVE+ + AN+EV+L A +I
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRATANKEVLLCAGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H + L Y K PVS Y
Sbjct: 262 ASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMY-LQYE-CKEPVSLY 315
>sp|B7N8L3|BETA_ECOLU Choline dehydrogenase OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=betA PE=3 SV=1
Length = 556
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT-IKVNANREVVLAANSI 65
+L K + + + ++ + FD + GVE+ + AN+EV+L A +I
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRATANKEVLLCAGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG A LL++++IPLV +LPGVG+ L H + L Y K PVS Y
Sbjct: 262 ASPQILQRSGVGSAELLAEFDIPLVHDLPGVGENLQDHLEMY-LQYE-CKEPVSLY 315
>sp|P17444|BETA_ECOLI Choline dehydrogenase OS=Escherichia coli (strain K12) GN=betA PE=1
SV=1
Length = 556
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT-IKVNANREVVLAANSI 65
+L K + + + ++ + FD + GVE+ + AN+EV+L A +I
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRATANKEVLLCAGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H + L Y K PVS Y
Sbjct: 262 ASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMY-LQYE-CKEPVSLY 315
>sp|B1J0W6|BETA_ECOLC Choline dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM
1576 / Crooks) GN=betA PE=3 SV=1
Length = 556
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT-IKVNANREVVLAANSI 65
+L K + + + ++ + FD + GVE+ + AN+EV+L A +I
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRATANKEVLLCAGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H + L Y K PVS Y
Sbjct: 262 ASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMY-LQYE-CKEPVSLY 315
>sp|A7ZWV4|BETA_ECOHS Choline dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=betA
PE=3 SV=1
Length = 556
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT-IKVNANREVVLAANSI 65
+L K + + + ++ + FD + GVE+ + AN+EV+L A +I
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRATANKEVLLCAGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H + L Y K PVS Y
Sbjct: 262 ASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMY-LQYE-CKEPVSLY 315
>sp|B1XE52|BETA_ECODH Choline dehydrogenase OS=Escherichia coli (strain K12 / DH10B)
GN=betA PE=3 SV=1
Length = 556
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT-IKVNANREVVLAANSI 65
+L K + + + ++ + FD + GVE+ + AN+EV+L A +I
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRATANKEVLLCAGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H + L Y K PVS Y
Sbjct: 262 ASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMY-LQYE-CKEPVSLY 315
>sp|B7M2V5|BETA_ECO8A Choline dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=betA
PE=3 SV=1
Length = 556
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT-IKVNANREVVLAANSI 65
+L K + + + ++ + FD + GVE+ + AN+EV+L A +I
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRATANKEVLLCAGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H + L Y K PVS Y
Sbjct: 262 ASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMY-LQYE-CKEPVSLY 315
>sp|B5Z1R0|BETA_ECO5E Choline dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=betA PE=3 SV=1
Length = 562
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT-IKVNANREVVLAANSI 65
+L K + + + ++ + FD + GVE+ + AN+EV+L A +I
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--CKRAVGVEWLEGDSTIPTRATANKEVLLCAGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG+A LL++++IPLV +LPGVG+ L H + L Y K PVS Y
Sbjct: 262 ASPQILQRSGVGNAELLAEFDIPLVHDLPGVGENLQDHLEMY-LQYE-CKEPVSLY 315
>sp|Q8X6C6|BETA_ECO57 Choline dehydrogenase OS=Escherichia coli O157:H7 GN=betA PE=3 SV=1
Length = 562
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT-IKVNANREVVLAANSI 65
+L K + + + ++ + FD + GVE+ + AN+EV+L A +I
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--CKRAVGVEWLEGDSTIPTRATANKEVLLCAGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG+A LL++++IPLV +LPGVG+ L H + L Y K PVS Y
Sbjct: 262 ASPQILQRSGVGNAELLAEFDIPLVHDLPGVGENLQDHLEMY-LQYE-CKEPVSLY 315
>sp|B7L439|BETA_ECO55 Choline dehydrogenase OS=Escherichia coli (strain 55989 / EAEC)
GN=betA PE=3 SV=1
Length = 556
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT-IKVNANREVVLAANSI 65
+L K + + + ++ + FD + GVE+ + AN+EV+L A +I
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRATANKEVLLCAGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H + L Y K PVS Y
Sbjct: 262 ASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMY-LQYE-CKEPVSLY 315
>sp|A7ZI50|BETA_ECO24 Choline dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A
/ ETEC) GN=betA PE=3 SV=1
Length = 556
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT-IKVNANREVVLAANSI 65
+L K + + + ++ + FD + GVE+ + AN+EV+L A +I
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRATANKEVLLCAGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H + L Y K PVS Y
Sbjct: 262 ASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMY-LQYE-CKEPVSLY 315
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/105 (35%), Positives = 57/105 (54%)
Query: 3 ASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAA 62
++ FLR + +N + + N+ VTK+ V GVE + G K+ +EV+++
Sbjct: 261 SARAFLRPARMRNNLHILLNTTVTKVLIHPGTKNVVGVEVSDQFGSMRKILVKKEVIVSG 320
Query: 63 NSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFF 107
++NS +IL SGVG L K N+ V +LPGVGK L H +F
Sbjct: 321 GAVNSPQILLLSGVGPKEDLQKVNVRPVHHLPGVGKNLHNHVAYF 365
>sp|Q8CMY2|BETA_STAES Choline dehydrogenase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=betA PE=3 SV=1
Length = 572
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 1 MIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTK-VTGVEFRNPQGKTIKVNANREVV 59
M AS +LR + + V + VTKL FDE +K VTGV F+ GK V+AN EV+
Sbjct: 202 MSASRAYLRPALRRRNLDVETRAFVTKLIFDENNSKKVTGVTFKK-NGKEHTVHAN-EVI 259
Query: 60 LAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 103
L+ + N+ ++LQ SG+GD+ L I +LPGVG+ H
Sbjct: 260 LSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRMHLPGVGENFEDH 303
>sp|Q5HL11|BETA_STAEQ Choline dehydrogenase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=betA PE=3 SV=1
Length = 572
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 1 MIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTK-VTGVEFRNPQGKTIKVNANREVV 59
M AS +LR + + V + VTKL FDE +K VTGV F+ GK V+AN EV+
Sbjct: 202 MSASRAYLRPALRRRNLDVETRAFVTKLIFDENNSKKVTGVTFKK-NGKEHTVHAN-EVI 259
Query: 60 LAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 103
L+ + N+ ++LQ SG+GD+ L I +LPGVG+ H
Sbjct: 260 LSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRMHLPGVGENFEDH 303
>sp|Q8FKI9|BETA_ECOL6 Choline dehydrogenase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 67.0 bits (162), Expect = 4e-11, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT-IKVNANREVVLAANSI 65
+L K + + + ++ + FD + GVE+ + AN+EV+L A +I
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRAAANKEVLLCAGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H + L Y K PVS Y
Sbjct: 262 ASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMY-LQYE-CKEPVSLY 315
>sp|Q0TKW1|BETA_ECOL5 Choline dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 67.0 bits (162), Expect = 4e-11, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT-IKVNANREVVLAANSI 65
+L K + + + ++ + FD + GVE+ + AN+EV+L A +I
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRAAANKEVLLCAGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H + L Y K PVS Y
Sbjct: 262 ASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMY-LQYE-CKEPVSLY 315
>sp|B7UJG4|BETA_ECO27 Choline dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69
/ EPEC) GN=betA PE=3 SV=1
Length = 556
Score = 67.0 bits (162), Expect = 4e-11, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT-IKVNANREVVLAANSI 65
+L K + + + ++ + FD + GVE+ + AN+EV+L A +I
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRAAANKEVLLCAGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H + L Y K PVS Y
Sbjct: 262 ASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMY-LQYE-CKEPVSLY 315
>sp|Q1RFM3|BETA_ECOUT Choline dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC)
GN=betA PE=3 SV=2
Length = 562
Score = 66.6 bits (161), Expect = 6e-11, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT-IKVNANREVVLAANSI 65
+L K + + + ++ + FD + GVE+ + AN+EV+L A +I
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIFFD--GKRAVGVEWLEGDSTIPTRAAANKEVLLCAGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H + L Y K PVS Y
Sbjct: 262 ASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMY-LQYE-CKEPVSLY 315
>sp|B7MCD0|BETA_ECO45 Choline dehydrogenase OS=Escherichia coli O45:K1 (strain S88 /
ExPEC) GN=betA PE=3 SV=1
Length = 562
Score = 66.6 bits (161), Expect = 6e-11, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT-IKVNANREVVLAANSI 65
+L K + + + ++ + FD + GVE+ + AN+EV+L A +I
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIFFD--GKRAVGVEWLEGDSTIPTRAAANKEVLLCAGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG+A LL++++IPLV LPGVG+ L H + L Y K PVS Y
Sbjct: 262 ASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHLEMY-LQYE-CKEPVSLY 315
>sp|A8AJN0|BETA_CITK8 Choline dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 /
CDC 4225-83 / SGSC4696) GN=betA PE=3 SV=1
Length = 558
Score = 65.9 bits (159), Expect = 9e-11, Method: Composition-based stats.
Identities = 40/87 (45%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 36 KVTGVEFRNPQGKT-IKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLP 94
K +GVE+ + A +EV+L A +I S +ILQ+SGVGDA+LL ++IPLV +LP
Sbjct: 231 KASGVEWLEGDSTIPTRAMARKEVLLCAGAIASPQILQRSGVGDASLLKAFDIPLVHHLP 290
Query: 95 GVGKRLSLHPMFFGLSYTFTKTPVSSY 121
GVG+ L H + L Y K PVS Y
Sbjct: 291 GVGENLQDHLEMY-LQYE-CKEPVSLY 315
>sp|Q66D54|BETA_YERPS Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=betA PE=3 SV=1
Length = 567
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEF-RNPQGKTIKVNANREVVLAANSI 65
+L + +N + + ++ ++ F+ + TGV + + G +A REV+L +I
Sbjct: 204 YLDQARPRNNLTIITHALTDRILFE--GKRATGVSYLKGDAGTGQTAHARREVLLCGGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SG+G A LL + +IPLV+ LPGVG+ L H + L Y+ K PVS Y
Sbjct: 262 ASPQILQRSGIGPAELLQRLDIPLVQALPGVGENLQDHLEMY-LQYS-CKQPVSLY 315
>sp|B2K8U4|BETA_YERPB Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype IB
(strain PB1/+) GN=betA PE=3 SV=1
Length = 567
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEF-RNPQGKTIKVNANREVVLAANSI 65
+L + +N + + ++ ++ F+ + TGV + + G +A REV+L +I
Sbjct: 204 YLDQARPRNNLTIITHALTDRILFE--GKRATGVSYLKGDAGTGQTAHARREVLLCGGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SG+G A LL + +IPLV+ LPGVG+ L H + L Y+ K PVS Y
Sbjct: 262 ASPQILQRSGIGPAELLQRLDIPLVQALPGVGENLQDHLEMY-LQYS-CKQPVSLY 315
>sp|Q88AE7|BETA_PSESM Choline dehydrogenase OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=betA PE=3 SV=1
Length = 568
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT-IKVNANREVVLAANSI 65
+L K ++T+ + ++ ++ F+ + GV + T I+V A +EV+L +I
Sbjct: 208 YLDEAKKRDTLSIVTHALTDRILFE--GKRAVGVAYLVGDSDTRIEVRARKEVLLCGGAI 265
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG A +L+K +IP+V +LPGVG+ L H + L Y T+ PVS Y
Sbjct: 266 ASPQILQRSGVGPAEVLNKLDIPVVHDLPGVGQNLQDHLEMY-LQYACTQ-PVSLY 319
>sp|A8GBX9|BETA_SERP5 Choline dehydrogenase OS=Serratia proteamaculans (strain 568)
GN=betA PE=3 SV=1
Length = 555
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTI-KVNANREVVLAANSI 65
+L + + +++ ++ ++ FD + GV++ + K + A REV+L A +I
Sbjct: 204 YLDQARSRPNLKIVTHALTDRIRFD--GKRAVGVDYLQGEAKDVTSARARREVLLCAGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG AALL++ +I LV LPGVG+ L H + L Y K PVS Y
Sbjct: 262 ASPQILQRSGVGPAALLNRLDIDLVHELPGVGENLQDHLEMY-LQYA-CKKPVSLY 315
>sp|B1JSR0|BETA_YERPY Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3
(strain YPIII) GN=betA PE=3 SV=1
Length = 567
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEF-RNPQGKTIKVNANREVVLAANSI 65
+L + +N + + ++ ++ F+ + TGV + + G A REV+L +I
Sbjct: 204 YLDQARPRNNLTIITHALTDRILFE--GKRATGVRYLKGDAGTGQTAYARREVLLCGGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SG+G A LL + +IPLV+ LPGVG+ L H + L Y+ K PVS Y
Sbjct: 262 ASPQILQRSGIGPAELLQRLDIPLVQALPGVGENLQDHLEMY-LQYS-CKQPVSLY 315
>sp|A4TNP2|BETA_YERPP Choline dehydrogenase OS=Yersinia pestis (strain Pestoides F)
GN=betA PE=3 SV=1
Length = 567
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEF-RNPQGKTIKVNANREVVLAANSI 65
+L + +N + + ++ ++ F+ + TGV + + G A REV+L +I
Sbjct: 204 YLDQARPRNNLTIITHALTDRILFE--GKRATGVRYLKGDAGTGQTAYARREVLLCGGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SG+G A LL + +IPLV+ LPGVG+ L H + L Y+ K PVS Y
Sbjct: 262 ASPQILQRSGIGPAELLQRLDIPLVQALPGVGENLQDHLEMY-LQYS-CKQPVSLY 315
>sp|Q1CFR7|BETA_YERPN Choline dehydrogenase OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=betA PE=3 SV=1
Length = 567
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEF-RNPQGKTIKVNANREVVLAANSI 65
+L + +N + + ++ ++ F+ + TGV + + G A REV+L +I
Sbjct: 204 YLDQARPRNNLTIITHALTDRILFE--GKRATGVRYLKGDAGTGQTAYARREVLLCGGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SG+G A LL + +IPLV+ LPGVG+ L H + L Y+ K PVS Y
Sbjct: 262 ASPQILQRSGIGPAELLQRLDIPLVQALPGVGENLQDHLEMY-LQYS-CKQPVSLY 315
>sp|Q8ZGW0|BETA_YERPE Choline dehydrogenase OS=Yersinia pestis GN=betA PE=3 SV=1
Length = 567
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEF-RNPQGKTIKVNANREVVLAANSI 65
+L + +N + + ++ ++ F+ + TGV + + G A REV+L +I
Sbjct: 204 YLDQARPRNNLTIITHALTDRILFE--GKRATGVRYLKGDAGTGQTAYARREVLLCGGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SG+G A LL + +IPLV+ LPGVG+ L H + L Y+ K PVS Y
Sbjct: 262 ASPQILQRSGIGPAELLQRLDIPLVQALPGVGENLQDHLEMY-LQYS-CKQPVSLY 315
>sp|Q1C932|BETA_YERPA Choline dehydrogenase OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=betA PE=3 SV=1
Length = 567
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEF-RNPQGKTIKVNANREVVLAANSI 65
+L + +N + + ++ ++ F+ + TGV + + G A REV+L +I
Sbjct: 204 YLDQARPRNNLTIITHALTDRILFE--GKRATGVRYLKGDAGTGQTAYARREVLLCGGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SG+G A LL + +IPLV+ LPGVG+ L H + L Y+ K PVS Y
Sbjct: 262 ASPQILQRSGIGPAELLQRLDIPLVQALPGVGENLQDHLEMY-LQYS-CKQPVSLY 315
>sp|A7FKL6|BETA_YERP3 Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b
(strain IP 31758) GN=betA PE=3 SV=1
Length = 567
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEF-RNPQGKTIKVNANREVVLAANSI 65
+L + +N + + ++ ++ F+ + TGV + + G A REV+L +I
Sbjct: 204 YLDQARPRNNLTIITHALTDRILFE--GKRATGVRYLKGDAGTGQTAYARREVLLCGGAI 261
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SG+G A LL + +IPLV+ LPGVG+ L H + L Y+ K PVS Y
Sbjct: 262 ASPQILQRSGIGPAELLQRLDIPLVQALPGVGENLQDHLEMY-LQYS-CKQPVSLY 315
>sp|A6T613|BETA_KLEP7 Choline dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae
(strain ATCC 700721 / MGH 78578) GN=betA PE=3 SV=1
Length = 554
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 51 KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLS 110
K AN+EV+L A +I S +ILQ+SGVG+ LL +++IP+V +LPGVG+ L H + L
Sbjct: 247 KATANKEVLLCAGAIASPQILQRSGVGNPELLRQFDIPVVHDLPGVGENLQDHLEMY-LQ 305
Query: 111 YTFTKTPVSSY 121
Y K PVS Y
Sbjct: 306 YE-CKEPVSLY 315
>sp|B5Y008|BETA_KLEP3 Choline dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=betA
PE=3 SV=1
Length = 554
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 51 KVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLS 110
K AN+EV+L A +I S +ILQ+SGVG+ LL +++IP+V +LPGVG+ L H + L
Sbjct: 247 KATANKEVLLCAGAIASPQILQRSGVGNPELLRQFDIPVVHDLPGVGENLQDHLEMY-LQ 305
Query: 111 YTFTKTPVSSY 121
Y K PVS Y
Sbjct: 306 YE-CKEPVSLY 315
>sp|Q4K4K7|BETA_PSEF5 Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=betA PE=3 SV=1
Length = 567
Score = 63.5 bits (153), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 69/118 (58%), Gaps = 9/118 (7%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT---IKVNANREVVLAAN 63
+L K ++T+ + ++ K+ F+ + GV + QG T ++ A +EV++++
Sbjct: 206 YLDTAKKRSTLTIVTHALTDKILFE--GKRAVGVSYL--QGSTEERVEARARKEVIVSSG 261
Query: 64 SINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
+I S ++LQ+SGVG ALL +IP+V +LPGVG+ L H + L Y T+ PVS Y
Sbjct: 262 AIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLELY-LQYACTQ-PVSLY 317
>sp|Q4ZM63|BETA_PSEU2 Choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain
B728a) GN=betA PE=3 SV=1
Length = 568
Score = 63.5 bits (153), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT-IKVNANREVVLAANSI 65
+L K ++T+ + ++ ++ F+ + GV + T I+ A +EV+L +I
Sbjct: 208 YLDEAKKRSTLTIVTHALTDRILFE--GKRAVGVAYLVGDSDTRIQARARKEVLLCGGAI 265
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG A +L+K +IP+V +LPGVG+ L H + L Y T+ PVS Y
Sbjct: 266 ASPQILQRSGVGPAEVLNKLDIPVVHDLPGVGQNLQDHLEMY-LQYACTQ-PVSLY 319
>sp|Q48CM7|BETA_PSE14 Choline dehydrogenase OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=betA PE=3 SV=1
Length = 568
Score = 63.5 bits (153), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT-IKVNANREVVLAANSI 65
+L K ++T+ + ++ ++ F+ + GV + T I+ A +EV+L +I
Sbjct: 208 YLDEAKKRSTLTIVTHALTDRILFE--GKRAVGVAYLVGDSDTRIQARARKEVLLCGGAI 265
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG A +L+K +IP+V +LPGVG+ L H + L Y T+ PVS Y
Sbjct: 266 ASPQILQRSGVGPAEVLNKLDIPVVHDLPGVGQNLQDHLEMY-LQYACTQ-PVSLY 319
>sp|A4XPI5|BETA_PSEMY Choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betA
PE=3 SV=1
Length = 565
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSIN 66
+L +++ + + ++ ++ FD + N T + A REV+L A +I
Sbjct: 206 YLDQARERPNLTIVTHATTDRILFDGKRASGVSYLIGNANDAT-EARARREVLLCAGAIA 264
Query: 67 SVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG AALL + +I LV LPGVG+ L H + L Y T+ PVS Y
Sbjct: 265 SPQILQRSGVGPAALLRELDIALVHELPGVGQNLQDHLEMY-LQYACTQ-PVSLY 317
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 60/100 (60%), Gaps = 3/100 (3%)
Query: 4 SSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAAN 63
+S +LR + ++ + V+++ F+ T+ GVE+ G++ K +REV+L+
Sbjct: 246 ASAYLRPALSRPNLRAEVQTLVSRVLFE--GTRAVGVEYIK-DGQSHKAYVSREVILSGG 302
Query: 64 SINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 103
+INS ++L SGVG+A L K IP+V +LPGVG+ L H
Sbjct: 303 AINSPQLLMLSGVGNADDLKKLGIPVVCHLPGVGQNLQDH 342
>sp|Q1QXE1|BETA1_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=3 SV=1
Length = 560
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 36 KVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPG 95
+ GV + +G+ +V A REV+L A +I S +ILQ+SGVG+ L +++IP+V LPG
Sbjct: 235 RAVGVSYER-KGQAQRVRARREVLLCAGAIASPQILQRSGVGNPEHLEEFDIPVVHELPG 293
Query: 96 VGKRLSLHPMFFGLSYTFTKTPVSSY 121
VG+ L H + + Y K P+S Y
Sbjct: 294 VGENLQDHLEMY-IQYE-CKKPISLY 317
>sp|C6DKY4|BETA_PECCP Choline dehydrogenase OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=betA PE=3 SV=1
Length = 559
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 5/115 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSIN 66
+L K + + + ++ K+ F E K V F+ +T++ A REV+L A +I
Sbjct: 204 YLDQAKGRKNLTIVTHALTDKILF-EGKRAVGVAYFKGESPQTVQ--ARREVLLCAGAIA 260
Query: 67 SVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG LL +IP+V +LPGVG+ L H + L Y K PVS Y
Sbjct: 261 SPQILQRSGVGPKDLLQGLDIPVVHDLPGVGENLQDHLEMY-LQYA-CKEPVSLY 313
>sp|Q6FDF9|BETA_ACIAD Choline dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betA
PE=3 SV=1
Length = 553
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT--IKVNANREVVLAANS 64
+L K++ + + ++ K+ F+ + GVE+ K KV AN+EV+L A +
Sbjct: 207 YLDMAKERPNLTIITHAMTNKILFN--GKQAIGVEYIQGADKRDLKKVMANKEVLLCAGA 264
Query: 65 INSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
I S +ILQ+SGVG++ L +I +V +LPGVG+ L H + L Y K PVS Y
Sbjct: 265 IASPQILQRSGVGESTFLKSMDIDVVHDLPGVGENLQDHLEMY-LQYK-CKQPVSLY 319
>sp|Q5UPK7|YL128_MIMIV Putative GMC-type oxidoreductase L128 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_L128 PE=3 SV=1
Length = 563
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 62/107 (57%), Gaps = 6/107 (5%)
Query: 3 ASSIFLRAIKDKNTVQVSKNSEVTKLCFD---ETKTKVTGVEFRNPQGK--TIKVNANRE 57
A ++ I++ V++ S V K+ FD ET KV V ++N QG ++ A +
Sbjct: 252 AYRAYIHPIRNHPNVRIMLRSRVDKVAFDKCGETAKKVF-VTYQNYQGSDSQCELKAKKG 310
Query: 58 VVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHP 104
++L+A ++ + +IL QSGVG A L++ IP+V ++P VG+ L HP
Sbjct: 311 IILSAGALRTPQILMQSGVGPADHLNELGIPVVSDMPDVGQHLDDHP 357
>sp|Q3K5H3|BETA_PSEPF Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1)
GN=betA PE=3 SV=1
Length = 567
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFR-NPQGKTIKVNANREVVLAANSI 65
+L K ++T+ + ++ K+ F+ + GV + + ++ A +EV++ + +I
Sbjct: 206 YLDVAKKRSTLTIVTHALTDKVLFE--GKRAVGVRYLVGAAEERVEARARKEVIVCSGAI 263
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S ++LQ+SGVG A LL +IP+V +LPGVG+ L H + L Y T+ PVS Y
Sbjct: 264 ASPQLLQRSGVGPAKLLESLDIPVVHDLPGVGENLQDHLELY-LQYACTQ-PVSLY 317
>sp|Q6D6D9|BETA_ERWCT Choline dehydrogenase OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=betA PE=3 SV=1
Length = 559
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSIN 66
+L K + + + ++ ++ FD K V F+ +T K A REV+L A +I
Sbjct: 204 YLDQAKSRKNLTIVTHALTDRILFD-GKRAVGVAYFKGESAQTAK--ARREVLLCAGAIA 260
Query: 67 SVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
S +ILQ+SGVG LL + +I +V +LPGVG+ L H + L Y K PVS Y
Sbjct: 261 SPQILQRSGVGPKDLLQRLDISVVHDLPGVGENLQDHLEMY-LQYA-CKEPVSLY 313
>sp|Q4A0Q1|BETA_STAS1 Choline dehydrogenase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=betA
PE=3 SV=1
Length = 560
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 3 ASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAA 62
AS +L + ++V + VTKL F+ KVTGV F+ G+ VNA +EV+L+
Sbjct: 202 ASRAYLHPAMKRKNLEVQTRAFVTKLNFE--GNKVTGVTFKK-NGREHTVNA-KEVILSG 257
Query: 63 NSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 103
+INS ++LQ SG+GD+ L I +LPGVG+ H
Sbjct: 258 GAINSPQLLQLSGIGDSEHLRSLGIEPRIHLPGVGENFEDH 298
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 3 ASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAA 62
A+ +L + ++ + V+++ F+ T+ GVE+ G++ + A++EV+L+
Sbjct: 240 AACAYLHPALSRTNLKAEAETLVSRVLFE--GTRAVGVEYVK-NGQSHRAYASKEVILSG 296
Query: 63 NSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLH 103
+INS ++L SG+G+A L K IP+V +LPGVG+ L H
Sbjct: 297 GAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDH 337
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419)
GN=betA PE=3 SV=1
Length = 549
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 45/124 (36%), Positives = 65/124 (52%), Gaps = 14/124 (11%)
Query: 3 ASSIFLRAIKDKNTVQVSKNSEVTKLCFDET----KTKVTGVEFRNPQGKTIKVNANREV 58
A+S +LR + V++ + CF + TGVE G+T V ANREV
Sbjct: 195 AASAYLRPALKRPNVELVR-------CFARKIVIENGRATGVEIER-GGRTEVVRANREV 246
Query: 59 VLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPV 118
+++A+S NS ++L SG+G AA L + I + + PGVG+ L H M F TK PV
Sbjct: 247 IVSASSFNSPKLLMLSGIGPAAHLQEMGIDVKADRPGVGQNLQDH-MEFYFQQVSTK-PV 304
Query: 119 SSYT 122
S Y+
Sbjct: 305 SLYS 308
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,751,530
Number of Sequences: 539616
Number of extensions: 1828308
Number of successful extensions: 4915
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 4760
Number of HSP's gapped (non-prelim): 171
length of query: 152
length of database: 191,569,459
effective HSP length: 107
effective length of query: 45
effective length of database: 133,830,547
effective search space: 6022374615
effective search space used: 6022374615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)