Query psy17300
Match_columns 152
No_of_seqs 135 out of 1103
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 18:27:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17300.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17300hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 4.6E-33 9.9E-38 244.5 12.2 149 1-151 252-404 (623)
2 PRK02106 choline dehydrogenase 100.0 9.2E-29 2E-33 217.3 14.4 138 1-142 200-342 (560)
3 TIGR01810 betA choline dehydro 100.0 2.8E-28 6.1E-33 213.0 14.3 138 1-142 193-335 (532)
4 PF00732 GMC_oxred_N: GMC oxid 100.0 4.5E-29 9.8E-34 201.7 6.1 103 1-104 192-295 (296)
5 PLN02785 Protein HOTHEAD 99.9 1.1E-25 2.3E-30 199.5 12.9 110 5-116 224-339 (587)
6 COG2303 BetA Choline dehydroge 99.9 1.4E-22 3E-27 178.2 7.9 140 1-143 202-347 (542)
7 TIGR02462 pyranose_ox pyranose 99.8 2.6E-18 5.6E-23 151.3 11.6 112 1-116 209-326 (544)
8 PRK12835 3-ketosteroid-delta-1 97.8 9.6E-05 2.1E-09 66.1 8.7 62 8-71 219-281 (584)
9 PRK12837 3-ketosteroid-delta-1 97.8 0.00015 3.3E-09 63.7 9.1 62 7-71 179-241 (513)
10 PRK07843 3-ketosteroid-delta-1 97.5 0.00053 1.2E-08 60.9 8.9 57 12-71 218-274 (557)
11 PRK12844 3-ketosteroid-delta-1 97.4 0.00088 1.9E-08 59.6 8.7 54 12-68 218-271 (557)
12 PRK08274 tricarballylate dehyd 97.3 0.0014 3E-08 56.5 8.7 61 13-76 142-202 (466)
13 PF00890 FAD_binding_2: FAD bi 97.2 0.0013 2.9E-08 55.5 7.7 51 14-67 153-204 (417)
14 PRK07121 hypothetical protein; 97.2 0.0018 3.9E-08 56.4 8.5 54 12-67 187-240 (492)
15 PRK12845 3-ketosteroid-delta-1 97.2 0.0019 4.1E-08 57.7 8.4 54 13-69 228-281 (564)
16 PRK06134 putative FAD-binding 96.9 0.0056 1.2E-07 54.7 8.8 57 12-71 227-283 (581)
17 PRK06175 L-aspartate oxidase; 96.9 0.0046 1E-07 53.3 8.0 54 10-67 137-190 (433)
18 PLN02815 L-aspartate oxidase 96.9 0.004 8.8E-08 56.0 7.6 56 11-67 165-223 (594)
19 TIGR01816 sdhA_forward succina 96.9 0.0054 1.2E-07 54.7 8.3 52 13-67 130-182 (565)
20 PRK12839 hypothetical protein; 96.9 0.0058 1.3E-07 54.7 8.5 53 13-67 225-277 (572)
21 PRK05675 sdhA succinate dehydr 96.8 0.0057 1.2E-07 54.6 8.2 53 13-67 137-190 (570)
22 PRK12843 putative FAD-binding 96.8 0.0068 1.5E-07 54.2 8.4 53 13-68 232-284 (578)
23 TIGR01813 flavo_cyto_c flavocy 96.8 0.0069 1.5E-07 51.8 8.0 54 12-67 140-193 (439)
24 PRK06263 sdhA succinate dehydr 96.8 0.0062 1.3E-07 53.9 7.9 53 13-67 145-198 (543)
25 PRK07573 sdhA succinate dehydr 96.7 0.0074 1.6E-07 54.7 8.0 53 13-68 181-234 (640)
26 TIGR01811 sdhA_Bsu succinate d 96.7 0.0077 1.7E-07 54.2 7.9 52 14-67 145-197 (603)
27 PRK09078 sdhA succinate dehydr 96.6 0.0091 2E-07 53.6 8.0 53 13-67 160-213 (598)
28 PRK08958 sdhA succinate dehydr 96.6 0.011 2.4E-07 53.0 8.3 53 13-67 154-207 (588)
29 PRK07395 L-aspartate oxidase; 96.6 0.0059 1.3E-07 54.4 6.4 55 11-67 144-198 (553)
30 PRK06452 sdhA succinate dehydr 96.5 0.012 2.7E-07 52.4 8.2 50 14-66 148-198 (566)
31 PTZ00139 Succinate dehydrogena 96.5 0.011 2.5E-07 53.3 7.8 54 13-68 177-231 (617)
32 PRK12842 putative succinate de 96.5 0.019 4E-07 51.3 9.0 53 12-67 224-276 (574)
33 PRK09077 L-aspartate oxidase; 96.4 0.014 3.1E-07 51.6 7.9 56 11-67 148-208 (536)
34 PRK08626 fumarate reductase fl 96.4 0.014 3E-07 53.1 7.8 52 13-67 169-221 (657)
35 TIGR01176 fum_red_Fp fumarate 96.4 0.02 4.3E-07 51.4 8.6 54 11-67 142-196 (580)
36 PRK06481 fumarate reductase fl 96.4 0.018 4E-07 50.5 8.2 53 13-68 201-253 (506)
37 PLN00128 Succinate dehydrogena 96.3 0.016 3.5E-07 52.6 7.8 53 14-68 199-252 (635)
38 PRK09231 fumarate reductase fl 96.3 0.023 4.9E-07 51.0 8.6 54 11-67 143-197 (582)
39 PRK08275 putative oxidoreducta 96.3 0.02 4.3E-07 50.9 7.9 53 13-67 148-201 (554)
40 PTZ00306 NADH-dependent fumara 96.3 0.017 3.6E-07 55.8 7.9 53 15-68 560-622 (1167)
41 PRK12834 putative FAD-binding 96.2 0.023 4.9E-07 50.4 8.2 51 14-67 164-228 (549)
42 KOG2404|consensus 96.2 0.0059 1.3E-07 51.8 4.2 51 14-67 157-207 (477)
43 PRK07803 sdhA succinate dehydr 96.2 0.021 4.5E-07 51.7 7.8 50 16-68 165-215 (626)
44 COG0029 NadB Aspartate oxidase 96.2 0.01 2.2E-07 52.4 5.4 59 6-66 138-196 (518)
45 TIGR01812 sdhA_frdA_Gneg succi 96.1 0.028 6.1E-07 49.9 8.0 51 14-67 141-192 (566)
46 PRK06069 sdhA succinate dehydr 96.1 0.031 6.8E-07 49.9 8.2 54 11-67 147-201 (577)
47 PRK05945 sdhA succinate dehydr 96.0 0.037 8E-07 49.4 8.3 52 13-67 146-198 (575)
48 TIGR00551 nadB L-aspartate oxi 96.0 0.033 7.2E-07 48.6 7.8 53 11-67 138-190 (488)
49 PRK06854 adenylylsulfate reduc 96.0 0.041 8.8E-07 49.6 8.5 53 11-66 142-195 (608)
50 PRK07057 sdhA succinate dehydr 95.9 0.034 7.4E-07 49.9 7.9 52 14-67 160-212 (591)
51 PRK07512 L-aspartate oxidase; 95.9 0.022 4.7E-07 50.2 6.5 53 11-67 146-198 (513)
52 PRK08205 sdhA succinate dehydr 95.9 0.036 7.9E-07 49.6 8.0 54 13-67 151-207 (583)
53 PRK13977 myosin-cross-reactive 95.9 0.031 6.7E-07 50.3 7.4 57 12-68 236-295 (576)
54 PF01266 DAO: FAD dependent ox 95.9 0.027 5.9E-07 45.4 6.5 55 13-76 158-212 (358)
55 PF06039 Mqo: Malate:quinone o 95.9 0.061 1.3E-06 47.3 8.8 70 5-78 185-255 (488)
56 PF13738 Pyr_redox_3: Pyridine 95.8 0.015 3.3E-07 43.8 4.6 63 5-75 85-147 (203)
57 PRK08071 L-aspartate oxidase; 95.8 0.032 6.9E-07 49.2 7.0 50 15-67 142-191 (510)
58 PRK08641 sdhA succinate dehydr 95.7 0.044 9.6E-07 49.2 7.5 51 15-67 150-201 (589)
59 TIGR02485 CobZ_N-term precorri 95.2 0.1 2.3E-06 44.6 8.0 56 13-72 134-189 (432)
60 TIGR02061 aprA adenosine phosp 95.2 0.11 2.3E-06 47.2 8.3 52 15-67 139-192 (614)
61 PRK13800 putative oxidoreducta 95.2 0.078 1.7E-06 49.9 7.6 50 15-67 156-206 (897)
62 TIGR03377 glycerol3P_GlpA glyc 95.1 0.14 3.1E-06 44.9 8.7 59 14-76 140-199 (516)
63 PRK07804 L-aspartate oxidase; 94.6 0.15 3.2E-06 45.3 7.7 52 14-67 156-211 (541)
64 PLN02464 glycerol-3-phosphate 94.6 0.17 3.6E-06 45.9 7.9 61 13-75 243-304 (627)
65 PRK11101 glpA sn-glycerol-3-ph 94.5 0.16 3.4E-06 45.2 7.5 60 13-76 160-220 (546)
66 PRK05257 malate:quinone oxidor 94.5 0.47 1E-05 41.9 10.3 67 7-77 189-256 (494)
67 TIGR03378 glycerol3P_GlpB glyc 94.3 0.19 4.1E-06 43.7 7.4 57 13-74 274-330 (419)
68 PTZ00383 malate:quinone oxidor 94.0 0.27 5.8E-06 43.5 7.9 54 16-78 231-284 (497)
69 PF01134 GIDA: Glucose inhibit 94.0 0.16 3.6E-06 43.7 6.4 53 11-71 105-157 (392)
70 COG0578 GlpA Glycerol-3-phosph 93.5 0.16 3.5E-06 45.4 5.5 58 14-76 176-234 (532)
71 PLN02661 Putative thiazole syn 93.4 0.34 7.3E-06 41.3 7.2 57 7-66 178-244 (357)
72 PRK05329 anaerobic glycerol-3- 93.3 0.44 9.5E-06 41.3 7.9 58 8-70 265-322 (422)
73 PF12831 FAD_oxidored: FAD dep 92.8 0.031 6.7E-07 48.1 0.0 63 7-76 95-157 (428)
74 PRK06185 hypothetical protein; 92.4 0.93 2E-05 38.0 8.5 62 11-78 118-179 (407)
75 TIGR01320 mal_quin_oxido malat 92.3 1.2 2.7E-05 39.1 9.3 66 7-77 184-250 (483)
76 PRK04176 ribulose-1,5-biphosph 92.0 0.67 1.5E-05 37.3 6.8 53 13-67 115-174 (257)
77 PRK13339 malate:quinone oxidor 91.6 1.5 3.3E-05 38.8 9.2 68 6-77 189-257 (497)
78 TIGR02352 thiamin_ThiO glycine 91.6 0.65 1.4E-05 37.5 6.4 46 13-66 148-193 (337)
79 TIGR02733 desat_CrtD C-3',4' d 91.0 0.78 1.7E-05 39.8 6.7 55 14-71 244-299 (492)
80 PF13434 K_oxygenase: L-lysine 90.6 0.8 1.7E-05 38.5 6.2 63 5-70 98-161 (341)
81 TIGR02730 carot_isom carotene 90.2 0.81 1.7E-05 39.9 6.0 53 13-72 240-292 (493)
82 TIGR02731 phytoene_desat phyto 89.8 1.1 2.3E-05 38.5 6.4 49 14-64 225-274 (453)
83 TIGR01292 TRX_reduct thioredox 89.6 3.1 6.7E-05 32.8 8.6 60 11-74 186-246 (300)
84 PRK07208 hypothetical protein; 89.6 1.4 3.1E-05 37.9 7.1 55 14-70 230-284 (479)
85 PF03486 HI0933_like: HI0933-l 89.6 0.73 1.6E-05 39.8 5.2 51 12-69 119-169 (409)
86 PRK06126 hypothetical protein; 89.2 2.2 4.9E-05 37.5 8.2 54 12-69 137-191 (545)
87 TIGR02734 crtI_fam phytoene de 89.2 1.1 2.3E-05 39.0 6.0 54 14-74 231-284 (502)
88 PLN02172 flavin-containing mon 89.1 1.6 3.4E-05 38.2 7.0 68 5-76 114-183 (461)
89 PLN02985 squalene monooxygenas 89.0 2.3 5.1E-05 37.6 8.1 58 11-72 157-214 (514)
90 PRK15317 alkyl hydroperoxide r 89.0 2.8 6E-05 36.9 8.5 61 11-74 396-457 (517)
91 COG0579 Predicted dehydrogenas 88.7 2.2 4.7E-05 37.3 7.5 66 6-79 158-223 (429)
92 PRK12266 glpD glycerol-3-phosp 88.0 2.6 5.7E-05 37.1 7.7 55 13-72 166-221 (508)
93 TIGR01373 soxB sarcosine oxida 87.8 2.4 5.1E-05 35.7 7.1 56 13-76 194-249 (407)
94 PRK13369 glycerol-3-phosphate 87.5 2.9 6.3E-05 36.6 7.7 55 13-72 166-220 (502)
95 COG1053 SdhA Succinate dehydro 87.4 0.77 1.7E-05 41.3 4.1 54 11-66 148-202 (562)
96 PRK00711 D-amino acid dehydrog 87.2 2.4 5.3E-05 35.5 6.9 51 13-72 212-262 (416)
97 TIGR00292 thiazole biosynthesi 86.4 3.3 7.2E-05 33.3 6.9 50 14-64 112-168 (254)
98 PRK05192 tRNA uridine 5-carbox 85.7 2.6 5.7E-05 38.5 6.6 51 11-69 110-160 (618)
99 KOG0042|consensus 85.6 0.34 7.4E-06 43.7 0.9 53 14-68 236-289 (680)
100 TIGR03140 AhpF alkyl hydropero 84.9 6.3 0.00014 34.7 8.5 58 13-73 399-457 (515)
101 TIGR03862 flavo_PP4765 unchara 84.9 2.6 5.7E-05 36.1 5.9 55 7-70 91-145 (376)
102 COG3634 AhpF Alkyl hydroperoxi 84.9 4.7 0.0001 35.0 7.3 61 11-74 399-460 (520)
103 KOG4254|consensus 84.9 1 2.2E-05 40.0 3.4 59 7-72 269-327 (561)
104 TIGR00136 gidA glucose-inhibit 84.3 3.6 7.7E-05 37.6 6.7 55 11-72 106-160 (617)
105 PRK11728 hydroxyglutarate oxid 84.1 6.9 0.00015 32.8 8.1 55 13-77 160-214 (393)
106 PRK08401 L-aspartate oxidase; 84.0 4.6 0.0001 35.1 7.2 47 13-68 131-177 (466)
107 PRK10157 putative oxidoreducta 83.6 7.9 0.00017 33.2 8.4 61 7-77 113-173 (428)
108 TIGR01377 soxA_mon sarcosine o 83.5 6.4 0.00014 32.4 7.6 55 13-77 156-210 (380)
109 TIGR02732 zeta_caro_desat caro 83.1 4.4 9.6E-05 35.3 6.7 56 14-71 231-289 (474)
110 PRK07364 2-octaprenyl-6-methox 83.1 6.4 0.00014 33.0 7.5 54 11-69 131-184 (415)
111 PRK06183 mhpA 3-(3-hydroxyphen 82.8 8.4 0.00018 34.0 8.4 56 13-72 125-180 (538)
112 PRK12409 D-amino acid dehydrog 82.5 6.7 0.00015 33.0 7.4 56 13-73 208-264 (410)
113 COG2081 Predicted flavoprotein 82.0 4.5 9.8E-05 35.1 6.2 49 13-69 122-170 (408)
114 PRK06327 dihydrolipoamide dehy 81.0 7.5 0.00016 33.7 7.3 56 12-71 234-289 (475)
115 PRK07818 dihydrolipoamide dehy 80.3 11 0.00024 32.6 8.1 57 10-70 221-277 (466)
116 TIGR03197 MnmC_Cterm tRNA U-34 79.6 8.8 0.00019 32.0 7.1 49 13-71 146-194 (381)
117 PRK10262 thioredoxin reductase 79.2 15 0.00032 29.9 8.2 61 12-76 195-257 (321)
118 COG1233 Phytoene dehydrogenase 79.1 4.6 9.9E-05 35.4 5.4 53 12-72 234-286 (487)
119 PRK11259 solA N-methyltryptoph 78.9 8.7 0.00019 31.6 6.8 49 13-71 160-208 (376)
120 COG0445 GidA Flavin-dependent 77.7 2.2 4.7E-05 38.7 3.0 54 11-71 110-163 (621)
121 PF01494 FAD_binding_3: FAD bi 77.6 11 0.00025 30.0 7.0 51 14-68 123-173 (356)
122 PRK10015 oxidoreductase; Provi 76.8 10 0.00022 32.6 6.8 50 7-64 113-162 (429)
123 TIGR01350 lipoamide_DH dihydro 76.6 16 0.00034 31.3 8.0 52 12-69 221-272 (461)
124 PF13434 K_oxygenase: L-lysine 76.0 12 0.00025 31.5 6.8 51 11-64 288-339 (341)
125 COG0654 UbiH 2-polyprenyl-6-me 75.3 12 0.00027 31.3 6.9 52 9-68 112-163 (387)
126 KOG1298|consensus 74.9 4.3 9.4E-05 35.5 3.9 56 11-70 157-212 (509)
127 TIGR01316 gltA glutamate synth 74.4 20 0.00044 30.9 8.1 62 13-76 320-397 (449)
128 PF00070 Pyr_redox: Pyridine n 73.8 9.3 0.0002 24.6 4.6 35 6-43 44-78 (80)
129 COG3573 Predicted oxidoreducta 73.6 19 0.0004 31.3 7.4 61 11-74 162-236 (552)
130 PLN02487 zeta-carotene desatur 73.3 9.7 0.00021 34.4 6.0 57 13-71 306-365 (569)
131 TIGR01372 soxA sarcosine oxida 73.2 20 0.00044 34.4 8.4 61 13-77 362-422 (985)
132 PRK04965 NADH:flavorubredoxin 73.1 22 0.00048 29.6 7.8 62 8-77 189-250 (377)
133 PRK08244 hypothetical protein; 72.1 18 0.00039 31.4 7.3 59 8-71 106-164 (493)
134 PRK12831 putative oxidoreducta 72.0 18 0.00039 31.5 7.2 57 14-72 330-402 (464)
135 COG0644 FixC Dehydrogenases (f 71.5 14 0.00031 31.1 6.4 51 7-64 100-150 (396)
136 PRK12810 gltD glutamate syntha 70.8 16 0.00034 31.8 6.6 60 14-76 341-411 (471)
137 TIGR02032 GG-red-SF geranylger 70.6 22 0.00049 27.6 7.0 53 7-66 96-148 (295)
138 PRK07233 hypothetical protein; 69.7 8.5 0.00018 32.2 4.6 50 14-71 210-259 (434)
139 TIGR03364 HpnW_proposed FAD de 69.3 16 0.00036 30.0 6.2 44 13-70 157-200 (365)
140 PRK09564 coenzyme A disulfide 69.2 26 0.00057 29.7 7.6 61 8-77 197-257 (444)
141 COG3075 GlpB Anaerobic glycero 68.8 7.3 0.00016 33.5 3.9 52 14-70 270-321 (421)
142 PRK05976 dihydrolipoamide dehy 68.7 27 0.00059 30.1 7.7 60 8-71 227-286 (472)
143 PF00743 FMO-like: Flavin-bind 68.7 12 0.00027 33.3 5.6 66 5-72 87-156 (531)
144 PLN02612 phytoene desaturase 68.6 12 0.00026 33.6 5.5 44 14-63 320-363 (567)
145 PRK07045 putative monooxygenas 68.5 26 0.00056 29.1 7.3 54 11-70 116-169 (388)
146 PF06100 Strep_67kDa_ant: Stre 68.2 34 0.00073 30.6 8.1 54 13-67 218-275 (500)
147 COG2072 TrkA Predicted flavopr 68.1 14 0.00031 32.0 5.8 59 14-76 96-154 (443)
148 TIGR01988 Ubi-OHases Ubiquinon 67.5 27 0.00059 28.6 7.1 51 8-66 113-163 (385)
149 TIGR02028 ChlP geranylgeranyl 66.8 24 0.00053 29.9 6.8 57 8-66 99-160 (398)
150 PRK06416 dihydrolipoamide dehy 66.1 37 0.00081 29.1 7.9 57 10-71 221-277 (462)
151 PRK06370 mercuric reductase; V 66.1 35 0.00075 29.4 7.7 57 8-69 218-274 (463)
152 TIGR01318 gltD_gamma_fam gluta 65.8 21 0.00045 31.1 6.4 61 14-76 332-409 (467)
153 COG1252 Ndh NADH dehydrogenase 65.1 16 0.00035 31.7 5.4 59 6-75 213-271 (405)
154 TIGR02053 MerA mercuric reduct 65.0 35 0.00075 29.4 7.5 57 8-69 213-269 (463)
155 TIGR01984 UbiH 2-polyprenyl-6- 64.6 36 0.00078 28.0 7.3 44 14-65 118-161 (382)
156 PRK12769 putative oxidoreducta 64.5 32 0.00069 31.3 7.5 61 14-76 518-595 (654)
157 PRK06467 dihydrolipoamide dehy 63.9 35 0.00076 29.6 7.4 51 17-71 229-279 (471)
158 COG3486 IucD Lysine/ornithine 63.6 34 0.00074 30.0 7.1 56 14-72 290-347 (436)
159 PRK08132 FAD-dependent oxidore 61.0 52 0.0011 29.0 8.0 56 11-71 135-190 (547)
160 PRK09754 phenylpropionate diox 60.2 46 0.00099 28.0 7.3 62 7-77 191-252 (396)
161 PRK05732 2-octaprenyl-6-methox 60.1 44 0.00095 27.6 7.1 56 11-76 122-177 (395)
162 PRK14989 nitrite reductase sub 60.1 44 0.00095 31.7 7.7 64 7-76 192-255 (847)
163 PF01593 Amino_oxidase: Flavin 59.9 27 0.00058 28.2 5.7 45 16-68 223-267 (450)
164 TIGR00275 flavoprotein, HI0933 59.8 35 0.00076 29.0 6.6 49 12-69 115-163 (400)
165 PTZ00363 rab-GDP dissociation 59.7 33 0.00072 30.0 6.5 47 13-65 243-289 (443)
166 PRK06115 dihydrolipoamide dehy 59.6 48 0.0011 28.7 7.5 60 8-71 221-281 (466)
167 PRK08163 salicylate hydroxylas 58.8 40 0.00087 27.9 6.7 53 11-71 119-171 (396)
168 PRK11445 putative oxidoreducta 58.5 65 0.0014 26.6 7.8 54 14-72 110-163 (351)
169 PRK11749 dihydropyrimidine deh 58.3 38 0.00083 29.2 6.6 57 13-72 322-393 (457)
170 PRK05249 soluble pyridine nucl 57.6 43 0.00093 28.7 6.8 56 8-71 222-277 (461)
171 PRK01747 mnmC bifunctional tRN 57.3 34 0.00074 31.1 6.4 48 16-72 421-468 (662)
172 PRK08773 2-octaprenyl-3-methyl 56.9 50 0.0011 27.5 6.9 55 13-77 124-178 (392)
173 TIGR03329 Phn_aa_oxid putative 56.8 32 0.00069 29.7 5.9 45 13-67 194-238 (460)
174 PRK13512 coenzyme A disulfide 56.7 42 0.0009 28.8 6.6 48 13-66 69-117 (438)
175 PRK06912 acoL dihydrolipoamide 56.3 46 0.00099 28.7 6.8 54 10-70 219-272 (458)
176 COG0492 TrxB Thioredoxin reduc 55.9 79 0.0017 26.2 7.8 63 9-76 186-248 (305)
177 PRK07538 hypothetical protein; 55.1 61 0.0013 27.3 7.2 49 15-68 117-166 (413)
178 PRK12809 putative oxidoreducta 54.7 42 0.00091 30.5 6.5 52 14-67 501-568 (639)
179 TIGR01438 TGR thioredoxin and 54.0 62 0.0013 28.3 7.3 61 7-72 225-285 (484)
180 PRK09126 hypothetical protein; 53.7 78 0.0017 26.2 7.6 48 11-66 120-167 (392)
181 PRK06834 hypothetical protein; 53.7 54 0.0012 28.7 6.8 49 13-69 111-159 (488)
182 PRK08020 ubiF 2-octaprenyl-3-m 53.6 75 0.0016 26.3 7.5 49 11-68 122-170 (391)
183 PRK06292 dihydrolipoamide dehy 53.5 59 0.0013 27.8 7.0 53 12-70 220-272 (460)
184 PRK08849 2-octaprenyl-3-methyl 53.1 65 0.0014 26.8 7.0 52 11-70 120-171 (384)
185 PRK12770 putative glutamate sy 52.8 61 0.0013 26.7 6.8 60 13-76 221-297 (352)
186 PF07992 Pyr_redox_2: Pyridine 52.2 31 0.00067 25.4 4.5 53 13-71 69-125 (201)
187 PRK07608 ubiquinone biosynthes 52.2 63 0.0014 26.6 6.8 47 11-66 121-167 (388)
188 PRK08243 4-hydroxybenzoate 3-m 52.0 70 0.0015 26.7 7.1 55 13-71 114-168 (392)
189 PRK07190 hypothetical protein; 51.1 54 0.0012 28.8 6.4 49 14-70 121-169 (487)
190 TIGR03385 CoA_CoA_reduc CoA-di 50.9 82 0.0018 26.6 7.4 59 8-76 185-243 (427)
191 PRK06184 hypothetical protein; 50.8 78 0.0017 27.5 7.4 54 14-72 121-174 (502)
192 TIGR02374 nitri_red_nirB nitri 50.8 63 0.0014 30.2 7.1 61 8-76 188-248 (785)
193 PRK12771 putative glutamate sy 50.8 60 0.0013 28.9 6.8 60 14-76 317-391 (564)
194 PRK14727 putative mercuric red 50.0 65 0.0014 28.0 6.8 55 8-71 234-288 (479)
195 TIGR02023 BchP-ChlP geranylger 49.6 75 0.0016 26.5 6.9 49 13-66 103-155 (388)
196 PRK12775 putative trifunctiona 48.7 76 0.0017 30.7 7.5 58 13-72 620-692 (1006)
197 TIGR03467 HpnE squalene-associ 48.7 29 0.00063 28.7 4.2 50 14-70 209-258 (419)
198 PRK06116 glutathione reductase 48.6 88 0.0019 26.7 7.3 54 10-70 216-269 (450)
199 PRK06847 hypothetical protein; 48.6 1E+02 0.0022 25.3 7.4 52 13-72 118-169 (375)
200 PLN02576 protoporphyrinogen ox 48.0 60 0.0013 28.0 6.2 52 17-72 252-303 (496)
201 TIGR03385 CoA_CoA_reduc CoA-di 47.7 43 0.00093 28.4 5.2 56 13-76 55-111 (427)
202 TIGR01421 gluta_reduc_1 glutat 47.4 89 0.0019 26.9 7.1 56 10-71 215-270 (450)
203 COG2509 Uncharacterized FAD-de 47.3 58 0.0013 29.0 5.9 46 14-66 185-230 (486)
204 PRK08010 pyridine nucleotide-d 46.9 72 0.0016 27.2 6.5 54 10-72 207-260 (441)
205 PRK08850 2-octaprenyl-6-methox 45.2 1.2E+02 0.0026 25.3 7.5 48 11-67 121-168 (405)
206 PRK07845 flavoprotein disulfid 45.1 1.1E+02 0.0023 26.5 7.3 62 7-76 223-286 (466)
207 PRK07333 2-octaprenyl-6-methox 45.0 95 0.002 25.7 6.8 55 13-77 122-176 (403)
208 PRK12779 putative bifunctional 44.8 1.5E+02 0.0033 28.5 8.8 55 14-69 496-565 (944)
209 KOG1399|consensus 44.7 78 0.0017 27.8 6.4 67 6-77 94-164 (448)
210 KOG2311|consensus 44.2 35 0.00077 30.9 4.1 56 11-71 134-191 (679)
211 PRK09564 coenzyme A disulfide 43.8 64 0.0014 27.4 5.7 47 13-65 67-114 (444)
212 COG0665 DadA Glycine/D-amino a 43.4 95 0.0021 25.4 6.5 49 11-68 166-214 (387)
213 PRK08013 oxidoreductase; Provi 43.1 1.1E+02 0.0024 25.6 7.0 49 11-68 121-169 (400)
214 TIGR03143 AhpF_homolog putativ 42.9 1.8E+02 0.0039 25.9 8.5 59 11-72 188-252 (555)
215 PRK06617 2-octaprenyl-6-methox 42.3 1.4E+02 0.003 24.7 7.4 52 11-71 114-165 (374)
216 PRK12778 putative bifunctional 42.1 94 0.002 28.8 6.8 56 13-70 619-690 (752)
217 TIGR01292 TRX_reduct thioredox 41.6 1.1E+02 0.0024 23.8 6.4 50 7-65 62-111 (300)
218 PRK08294 phenol 2-monooxygenas 41.4 1.5E+02 0.0033 27.0 7.9 56 16-72 157-216 (634)
219 PRK13984 putative oxidoreducta 41.4 1E+02 0.0022 27.7 6.7 56 14-72 474-544 (604)
220 TIGR01423 trypano_reduc trypan 41.1 97 0.0021 27.2 6.5 57 8-71 237-293 (486)
221 PRK15317 alkyl hydroperoxide r 40.6 85 0.0018 27.6 6.1 50 7-64 271-320 (517)
222 PLN02507 glutathione reductase 39.9 1.4E+02 0.003 26.3 7.3 56 8-71 250-305 (499)
223 PF04820 Trp_halogenase: Trypt 39.9 70 0.0015 27.9 5.3 52 6-64 158-209 (454)
224 COG2907 Predicted NAD/FAD-bind 39.5 48 0.001 28.8 4.1 59 4-70 219-277 (447)
225 KOG2852|consensus 39.3 68 0.0015 27.3 4.9 65 7-76 153-217 (380)
226 PRK05714 2-octaprenyl-3-methyl 38.4 1.3E+02 0.0028 25.1 6.7 50 14-71 124-173 (405)
227 PRK07494 2-octaprenyl-6-methox 38.4 1.5E+02 0.0033 24.4 7.0 47 11-66 121-167 (388)
228 PTZ00318 NADH dehydrogenase-li 37.7 1.3E+02 0.0027 25.7 6.5 56 8-76 234-289 (424)
229 TIGR03140 AhpF alkyl hydropero 37.6 1.1E+02 0.0024 26.9 6.3 45 13-65 278-322 (515)
230 PRK14694 putative mercuric red 37.4 1.3E+02 0.0028 26.0 6.6 55 8-71 224-278 (468)
231 TIGR01372 soxA sarcosine oxida 36.1 2.1E+02 0.0045 27.6 8.3 53 11-67 225-287 (985)
232 PRK13512 coenzyme A disulfide 35.8 1.7E+02 0.0036 25.0 7.0 57 8-76 195-251 (438)
233 COG1249 Lpd Pyruvate/2-oxoglut 35.5 1.5E+02 0.0032 26.1 6.7 53 7-65 219-271 (454)
234 PRK06475 salicylate hydroxylas 35.1 1.5E+02 0.0033 24.7 6.6 50 13-68 119-168 (400)
235 PRK11883 protoporphyrinogen ox 34.9 1.7E+02 0.0037 24.5 6.9 39 18-64 235-273 (451)
236 PRK13748 putative mercuric red 34.8 1.5E+02 0.0032 26.2 6.6 54 9-71 317-370 (561)
237 PLN02676 polyamine oxidase 34.5 1E+02 0.0022 27.1 5.5 38 17-62 245-282 (487)
238 PF07156 Prenylcys_lyase: Pren 34.1 80 0.0017 27.0 4.7 49 11-62 134-183 (368)
239 TIGR01424 gluta_reduc_2 glutat 33.0 1.7E+02 0.0037 25.0 6.7 54 10-71 215-268 (446)
240 TIGR00562 proto_IX_ox protopor 33.0 1.1E+02 0.0025 25.9 5.5 47 17-71 238-284 (462)
241 PRK06567 putative bifunctional 32.7 87 0.0019 30.6 5.1 56 14-71 652-733 (1028)
242 PRK04965 NADH:flavorubredoxin 32.4 1.1E+02 0.0024 25.4 5.3 42 13-65 69-110 (377)
243 KOG1335|consensus 32.2 1.7E+02 0.0037 26.0 6.3 50 11-63 261-311 (506)
244 PLN02507 glutathione reductase 31.8 1.4E+02 0.0031 26.2 6.1 45 12-65 134-178 (499)
245 KOG2415|consensus 31.5 1.1E+02 0.0024 27.5 5.1 80 6-87 187-279 (621)
246 PLN00093 geranylgeranyl diphos 31.3 1.8E+02 0.004 25.2 6.6 56 7-64 137-197 (450)
247 PF01946 Thi4: Thi4 family; PD 31.3 2.8E+02 0.0061 22.4 8.3 54 7-63 102-162 (230)
248 TIGR03169 Nterm_to_SelD pyridi 31.1 1.6E+02 0.0035 24.1 6.0 57 7-76 196-252 (364)
249 PTZ00052 thioredoxin reductase 30.3 2E+02 0.0043 25.2 6.7 58 7-72 227-284 (499)
250 PF07897 DUF1675: Protein of u 29.8 93 0.002 25.8 4.2 36 33-73 234-269 (284)
251 PLN02697 lycopene epsilon cycl 29.0 2E+02 0.0043 25.9 6.5 50 14-72 204-253 (529)
252 PRK12814 putative NADPH-depend 28.5 2E+02 0.0044 26.3 6.6 62 14-76 373-447 (652)
253 PRK07251 pyridine nucleotide-d 28.1 2.2E+02 0.0047 24.2 6.4 53 10-71 206-258 (438)
254 TIGR02360 pbenz_hydroxyl 4-hyd 27.9 1.9E+02 0.0041 24.3 5.9 50 14-68 115-164 (390)
255 PTZ00058 glutathione reductase 27.4 1.5E+02 0.0033 26.7 5.5 61 10-76 286-346 (561)
256 TIGR01989 COQ6 Ubiquinone bios 27.3 3.2E+02 0.0069 23.2 7.3 59 11-72 127-189 (437)
257 PTZ00367 squalene epoxidase; P 26.8 2.7E+02 0.0058 25.2 7.0 55 13-69 145-222 (567)
258 TIGR01790 carotene-cycl lycope 25.9 2.5E+02 0.0055 23.1 6.3 44 14-65 97-140 (388)
259 PRK09897 hypothetical protein; 25.7 2.6E+02 0.0056 25.1 6.6 43 17-66 124-166 (534)
260 KOG2820|consensus 25.6 1.7E+02 0.0037 25.3 5.2 51 13-68 164-214 (399)
261 PRK12416 protoporphyrinogen ox 25.4 1.6E+02 0.0034 25.2 5.1 39 17-63 239-277 (463)
262 PLN02268 probable polyamine ox 25.4 1.9E+02 0.0042 24.3 5.6 39 16-62 210-248 (435)
263 PF05899 Cupin_3: Protein of u 25.4 1.3E+02 0.0028 19.2 3.6 25 40-64 36-60 (74)
264 PRK07236 hypothetical protein; 24.8 2.9E+02 0.0064 22.8 6.5 49 15-71 111-159 (386)
265 PRK07846 mycothione reductase; 23.8 2.4E+02 0.0053 24.3 6.0 50 14-71 218-267 (451)
266 PRK07588 hypothetical protein; 23.0 3.1E+02 0.0067 22.7 6.3 45 15-68 115-159 (391)
267 PRK09754 phenylpropionate diox 23.0 2.5E+02 0.0054 23.5 5.8 43 14-66 70-112 (396)
268 COG1232 HemY Protoporphyrinoge 22.9 1.1E+02 0.0025 26.9 3.8 59 6-72 216-274 (444)
269 PF13454 NAD_binding_9: FAD-NA 22.8 3E+02 0.0065 19.8 6.9 35 22-64 121-155 (156)
270 TIGR02374 nitri_red_nirB nitri 22.6 2E+02 0.0043 27.0 5.5 48 13-72 65-112 (785)
271 KOG0404|consensus 22.6 1.4E+02 0.003 24.7 3.9 52 9-63 200-252 (322)
272 PF13670 PepSY_2: Peptidase pr 22.5 2.3E+02 0.0049 18.3 4.9 29 24-54 44-72 (83)
273 PRK06996 hypothetical protein; 22.3 4.1E+02 0.009 22.1 7.0 50 14-68 127-176 (398)
274 PRK14694 putative mercuric red 21.6 2.5E+02 0.0054 24.2 5.6 51 15-76 110-160 (468)
275 PRK05868 hypothetical protein; 20.2 4.1E+02 0.0088 22.1 6.5 46 14-68 116-161 (372)
276 PLN02463 lycopene beta cyclase 20.1 4.2E+02 0.0091 23.1 6.7 45 14-68 126-170 (447)
No 1
>KOG1238|consensus
Probab=100.00 E-value=4.6e-33 Score=244.46 Aligned_cols=149 Identities=31% Similarity=0.425 Sum_probs=133.8
Q ss_pred CcchhhhHHhhhc-CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCCCCh
Q psy17300 1 MIASSIFLRAIKD-KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDA 79 (152)
Q Consensus 1 ~Ss~~~~l~~~~~-~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgig~~ 79 (152)
||++++|++|+.. |+||++..++.|+||++|+.+.++.||++....|++++++|+||||||||||+||||||+|||||.
T Consensus 252 ~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a~gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~ 331 (623)
T KOG1238|consen 252 VSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAGKRAKGVEFVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGIGPA 331 (623)
T ss_pred EEehhhhhhhhhccCccccccccceEEEEEEcCCCceEEEEEEEecCceeeeecccceEEEeccccCCHHHHHHcCCCcH
Confidence 7899999999887 999999999999999999888999999999433799999999999999999999999999999999
Q ss_pred hhhhhcCCCcccCCcccccccccCcCcceEEEEEeCCCC---CchhhHHHHHHHHhcCCCccccccccccCcccc
Q psy17300 80 ALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPV---SSYTINEIIYEYLTQRTGKRRRKFTRKRGGRLE 151 (152)
Q Consensus 80 ~~l~~~gi~~~~~lp~VG~nl~dh~~~~~~~~~~~~~~~---~~~~~~~~~~~y~~~~~G~l~~~~~~~~~~~~~ 151 (152)
++|+++|||++.|||+||+|||||++. ++...+..+.+ .+......+.+|+..++||++..+ .+.+||+.
T Consensus 332 ~~L~~~gIpvv~dLP~VG~nLqDH~~~-~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~G~~~~~~-~e~~~f~~ 404 (623)
T KOG1238|consen 332 DHLKKLGIPVVLDLPGVGQNLQDHPMN-PGFVFSTNPVELSLIRLVGITTVGQYLEGGSGPLASPG-VETLGFIN 404 (623)
T ss_pred HHHHhcCCCeeccCccccccccccccc-ceeeecCCCccccccccccchHHHHHHHcCCCCcccCc-ceeeEEec
Confidence 999999999999999999999999999 77666666544 344556889999999999999888 67777764
No 2
>PRK02106 choline dehydrogenase; Validated
Probab=99.96 E-value=9.2e-29 Score=217.27 Aligned_cols=138 Identities=28% Similarity=0.447 Sum_probs=115.4
Q ss_pred CcchhhhHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCCCChh
Q psy17300 1 MIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAA 80 (152)
Q Consensus 1 ~Ss~~~~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgig~~~ 80 (152)
+|++.+||+++.+++|++|++++.|+||+++ +++++||+|.+..+ ...+.+.|+||||||+|+||+|||+|||||++
T Consensus 200 ~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~--~~~a~GV~~~~~~~-~~~~~~ak~VILaaGai~TP~LLl~SGIG~~~ 276 (560)
T PRK02106 200 WSAARAYLDPALKRPNLTIVTHALTDRILFE--GKRAVGVEYERGGG-RETARARREVILSAGAINSPQLLQLSGIGPAE 276 (560)
T ss_pred EChHHHhhccccCCCCcEEEcCCEEEEEEEe--CCeEEEEEEEeCCc-EEEEEeeeeEEEccCCCCCHHHHhhcCCCChH
Confidence 4778899999888999999999999999998 67999999986443 44444559999999999999999999999999
Q ss_pred hhhhcCCCcccCCcccccccccCcCcceEEEEEeCCCC--C---chhhHHHHHHHHhcCCCcccccc
Q psy17300 81 LLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPV--S---SYTINEIIYEYLTQRTGKRRRKF 142 (152)
Q Consensus 81 ~l~~~gi~~~~~lp~VG~nl~dh~~~~~~~~~~~~~~~--~---~~~~~~~~~~y~~~~~G~l~~~~ 142 (152)
+|+++||++++|||+||+|||||+.. .+.++++.+.. . .........+|+..++|+++...
T Consensus 277 ~L~~~gI~~~~dlP~VG~NL~dH~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 342 (560)
T PRK02106 277 HLKELGIPVVHDLPGVGENLQDHLEV-YIQYECKQPVSLYPALKWWNKPKIGAEWLFTGTGLGASNH 342 (560)
T ss_pred HHHhcCCceEeeCCCCCcChhhCccc-eEEEEeCCCcccccccchhhhhHHHHHHHhcCCCCccccc
Confidence 99999999999999999999999999 89998877543 1 11222334688888889886543
No 3
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=99.96 E-value=2.8e-28 Score=212.96 Aligned_cols=138 Identities=30% Similarity=0.432 Sum_probs=115.6
Q ss_pred CcchhhhHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCCCChh
Q psy17300 1 MIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAA 80 (152)
Q Consensus 1 ~Ss~~~~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgig~~~ 80 (152)
+|++.+||+++.+++|++|++++.|+||+++ +++++||++.+ .+....+.+.|+||||||+|+||+||++|||||++
T Consensus 193 ~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~--~~ra~GV~~~~-~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~ 269 (532)
T TIGR01810 193 VSAARAYLHPAMKRPNLEVQTRAFVTKINFE--GNRATGVEFKK-GGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAE 269 (532)
T ss_pred EcHHHHHhhhhccCCCeEEEeCCEEEEEEec--CCeEEEEEEEe-CCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHH
Confidence 5788899999888999999999999999998 67999999984 34445555669999999999999999999999999
Q ss_pred hhhhcCCCcccCCcccccccccCcCcceEEEEEeCCCC-Cc----hhhHHHHHHHHhcCCCcccccc
Q psy17300 81 LLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPV-SS----YTINEIIYEYLTQRTGKRRRKF 142 (152)
Q Consensus 81 ~l~~~gi~~~~~lp~VG~nl~dh~~~~~~~~~~~~~~~-~~----~~~~~~~~~y~~~~~G~l~~~~ 142 (152)
+|+++||+++.|||+||+||||||.. .+.++++.+.. .. .....+..+|+..+.|++....
T Consensus 270 ~L~~~gI~~~~~lp~VG~nL~DH~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 335 (532)
T TIGR01810 270 HLRELGIEPRIHLPGVGENLQDHLEV-YVQHACKQPVSLYPSLNWLKQPFIGAQWLFGRKGAGASNH 335 (532)
T ss_pred HHHhcCCCeEeeCCccccchhhcccc-eeEEEecCCcccccccchhhhhHHHHHHHhcCCCCccccc
Confidence 99999999999999999999999999 99999876543 11 1122334578888888887544
No 4
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.95 E-value=4.5e-29 Score=201.72 Aligned_cols=103 Identities=34% Similarity=0.591 Sum_probs=89.0
Q ss_pred CcchhhhHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCc-EEEEEeCcEEEEccCCccChHHHhhCCCCCh
Q psy17300 1 MIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGK-TIKVNANREVVLAANSINSVRILQQSGVGDA 79 (152)
Q Consensus 1 ~Ss~~~~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~-~~~~~a~k~VIlaaGai~tP~lLl~Sgig~~ 79 (152)
||++.+||+++.+++|++|++++.|+||+++.++.+|+||+|.+.++. ...+.+.|+||||||+|+||+|||+||||+.
T Consensus 192 ~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGiG~~ 271 (296)
T PF00732_consen 192 SSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGIGPK 271 (296)
T ss_dssp BHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTEE-H
T ss_pred eehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhcccccccH
Confidence 578899999999999999999999999999866899999999987666 3344444899999999999999999999999
Q ss_pred hhhhhcCCCcccCCcccccccccCc
Q psy17300 80 ALLSKYNIPLVKNLPGVGKRLSLHP 104 (152)
Q Consensus 80 ~~l~~~gi~~~~~lp~VG~nl~dh~ 104 (152)
+.|+++||+++.++| |||||||||
T Consensus 272 ~~L~~~gi~~~~~lp-VG~nl~dH~ 295 (296)
T PF00732_consen 272 DHLDALGIPVVVDLP-VGRNLQDHP 295 (296)
T ss_dssp HHHHHTTHHHSEE-T-TTECEB--E
T ss_pred HHHHHcCCCceeeCc-chhchhccc
Confidence 999999999999999 999999997
No 5
>PLN02785 Protein HOTHEAD
Probab=99.93 E-value=1.1e-25 Score=199.51 Aligned_cols=110 Identities=30% Similarity=0.455 Sum_probs=95.3
Q ss_pred hhhHHhhhcCCCcEEEcCcEEEEEEEeCCC--CeEEEEEEEcCCCcEEEE----EeCcEEEEccCCccChHHHhhCCCCC
Q psy17300 5 SIFLRAIKDKNTVQVSKNSEVTKLCFDETK--TKVTGVEFRNPQGKTIKV----NANREVVLAANSINSVRILQQSGVGD 78 (152)
Q Consensus 5 ~~~l~~~~~~~nl~l~~~~~V~ri~~~~~~--~~~~gV~~~~~~g~~~~~----~a~k~VIlaaGai~tP~lLl~Sgig~ 78 (152)
..++ +..+++|++|++++.|+||++++.+ .+++||+|.+.+|.++++ +++++||||||+|+||+|||+|||||
T Consensus 224 a~l~-~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp 302 (587)
T PLN02785 224 AELL-AAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGP 302 (587)
T ss_pred HHHH-hhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCC
Confidence 3344 5667899999999999999998522 489999998766765543 25689999999999999999999999
Q ss_pred hhhhhhcCCCcccCCcccccccccCcCcceEEEEEeCC
Q psy17300 79 AALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKT 116 (152)
Q Consensus 79 ~~~l~~~gi~~~~~lp~VG~nl~dh~~~~~~~~~~~~~ 116 (152)
+++|+++||++++|+|+||+||||||+. .+.+..+.+
T Consensus 303 ~~~L~~~gIpvv~dlP~VG~NL~DHp~~-~i~~~~~~~ 339 (587)
T PLN02785 303 KKELKKHKIPVVLHNEHVGKGMADNPMN-SIFVPSKAP 339 (587)
T ss_pred HHHHHHcCCCeeecCCCcccchhhCccc-ceEEEeCCC
Confidence 9999999999999999999999999999 888887654
No 6
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=99.87 E-value=1.4e-22 Score=178.25 Aligned_cols=140 Identities=27% Similarity=0.363 Sum_probs=116.7
Q ss_pred CcchhhhHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCc-EEEEEeCcEEEEccCCccChHHHhhCCCCCh
Q psy17300 1 MIASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGK-TIKVNANREVVLAANSINSVRILQQSGVGDA 79 (152)
Q Consensus 1 ~Ss~~~~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~-~~~~~a~k~VIlaaGai~tP~lLl~Sgig~~ 79 (152)
||++.+||+++.+++|++|++++.|+||+++ ++++++|++...++. .....+.++||||||+|+||+|||+||||+.
T Consensus 202 ~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~--~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig~~ 279 (542)
T COG2303 202 WSAARAYLKPALKRPNLTLLTGARVRRILLE--GDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPA 279 (542)
T ss_pred eechhhcchhHhcCCceEEecCCEEEEEEEE--CCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCCch
Confidence 7899999999999999999999999999999 889999999853332 3445556899999999999999999999999
Q ss_pred hhhhhcCCCcccCCcccccccccCcCcceEEEEEeCCCCC----c-hhhHHHHHHHHhcCCCccccccc
Q psy17300 80 ALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVS----S-YTINEIIYEYLTQRTGKRRRKFT 143 (152)
Q Consensus 80 ~~l~~~gi~~~~~lp~VG~nl~dh~~~~~~~~~~~~~~~~----~-~~~~~~~~~y~~~~~G~l~~~~~ 143 (152)
+.+..+|+.++.++|+||+|||||... .+.+..+....+ . ........+|...++|+.+.+..
T Consensus 280 ~~~~~~g~~~v~~~~~vg~nl~dH~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 347 (542)
T COG2303 280 DHLLEHGIDVVGRLPGVGQNLQDHLEI-YVAFEATEPTNDSVLSLFSKLGIGADRYLLTRDGPGATNHF 347 (542)
T ss_pred hhhhhcCCeeeecCcchhHHHHhhhhh-hhheeccCccccccccccccccccceeEEeecCCCcccccc
Confidence 999999999999999999999999999 888888876621 1 11222235677778888876554
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=99.77 E-value=2.6e-18 Score=151.31 Aligned_cols=112 Identities=18% Similarity=0.250 Sum_probs=88.6
Q ss_pred CcchhhhHHhhh----cCCCcEEEcCcEEEEEEEeCCC-CeEEEEEEEcC-CCcEEEEEeCcEEEEccCCccChHHHhhC
Q psy17300 1 MIASSIFLRAIK----DKNTVQVSKNSEVTKLCFDETK-TKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRILQQS 74 (152)
Q Consensus 1 ~Ss~~~~l~~~~----~~~nl~l~~~~~V~ri~~~~~~-~~~~gV~~~~~-~g~~~~~~a~k~VIlaaGai~tP~lLl~S 74 (152)
||+..+.+..+. .++|++|++++.|+||++|+++ ++|++|.|.|. +|+.++++| +.||||||+|+||||||+|
T Consensus 209 ~s~~~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A-~~vVLAagaIetpRLLL~S 287 (544)
T TIGR02462 209 WHSADTVFDLQPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKA-DVYVLACGAVHNPQILVNS 287 (544)
T ss_pred ecCCccchhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEEC-CEEEEccCchhhHHHHHhC
Confidence 566556676555 4899999999999999998644 68999999985 688889999 6999999999999999999
Q ss_pred CCCChhhhhhcCCCcccCCcccccccccCcCcceEEEEEeCC
Q psy17300 75 GVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKT 116 (152)
Q Consensus 75 gig~~~~l~~~gi~~~~~lp~VG~nl~dh~~~~~~~~~~~~~ 116 (152)
+++.... ..|+.+....+.||||||||+.. .+...++++
T Consensus 288 ~~~~~~~--p~gl~Nss~~g~VGRnlmdh~~~-~~~~~~~~~ 326 (544)
T TIGR02462 288 GFGQLGR--PDPTNPPPLLPSLGRYITEQSMT-FCQIVLSTE 326 (544)
T ss_pred CCCCCcC--CCCcCCCCCCCCCCcchhcCCCc-cEEEEecch
Confidence 9985332 22333322235799999999998 888877654
No 8
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.81 E-value=9.6e-05 Score=66.09 Aligned_cols=62 Identities=26% Similarity=0.369 Sum_probs=50.2
Q ss_pred HHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccC-hHHH
Q psy17300 8 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS-VRIL 71 (152)
Q Consensus 8 l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~t-P~lL 71 (152)
|.......+++|++++.|++|+.|+ +++|+||.+. .+++.+.++|++.||||+|+++. |.++
T Consensus 219 l~~~~~~~gv~i~~~~~~~~Li~d~-~g~V~Gv~~~-~~~~~~~i~a~~aVilAtGGf~~N~em~ 281 (584)
T PRK12835 219 LRLALKDAGVPLWLDSPMTELITDP-DGAVVGAVVE-REGRTLRIGARRGVILATGGFDHDMDWR 281 (584)
T ss_pred HHHHHHhCCceEEeCCEEEEEEECC-CCcEEEEEEE-eCCcEEEEEeceeEEEecCcccCCHHHH
Confidence 3444567899999999999999875 5789999987 46778889997789999999985 4444
No 9
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.77 E-value=0.00015 Score=63.68 Aligned_cols=62 Identities=24% Similarity=0.367 Sum_probs=49.6
Q ss_pred hHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccC-hHHH
Q psy17300 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS-VRIL 71 (152)
Q Consensus 7 ~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~t-P~lL 71 (152)
++..+..+++++|++++.|++|+.+ +++|+||.+. .++..+.++|+|.||||+|.++. +.++
T Consensus 179 l~~~~~~~~gv~i~~~t~~~~Li~~--~g~v~Gv~~~-~~g~~~~i~A~k~VIlAtGG~~~n~~m~ 241 (513)
T PRK12837 179 FLAALARFPNARLRLNTPLVELVVE--DGRVVGAVVE-RGGERRRVRARRGVLLAAGGFEQNDDMR 241 (513)
T ss_pred HHHHHHhCCCCEEEeCCEEEEEEec--CCEEEEEEEE-ECCcEEEEEeCceEEEeCCCccCCHHHH
Confidence 3444455679999999999999887 6799999986 46778889997789999999964 4444
No 10
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.52 E-value=0.00053 Score=60.93 Aligned_cols=57 Identities=26% Similarity=0.370 Sum_probs=47.1
Q ss_pred hcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 12 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 12 ~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
..+.++++++++.|++|+.+ +++|+||.+. .+++.+.++|++.||||+|.+.+-+-|
T Consensus 218 ~~~~gv~v~~~t~v~~l~~~--~g~v~Gv~~~-~~g~~~~i~A~~~VIlAtGG~~~n~~m 274 (557)
T PRK07843 218 LQRAGVPVLLNTPLTDLYVE--DGRVTGVHAA-ESGEPQLIRARRGVILASGGFEHNEQM 274 (557)
T ss_pred HHcCCCEEEeCCEEEEEEEe--CCEEEEEEEE-eCCcEEEEEeceeEEEccCCcCcCHHH
Confidence 35678999999999999887 6799999987 467778899966799999999884433
No 11
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.39 E-value=0.00088 Score=59.59 Aligned_cols=54 Identities=24% Similarity=0.347 Sum_probs=46.2
Q ss_pred hcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccCh
Q psy17300 12 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 12 ~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP 68 (152)
..+.+++|++++.|++|+.+ +++|+||.+. .+++.+.++|++.||||+|.+..-
T Consensus 218 ~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~-~~g~~~~i~A~~aVIlAtGG~~~N 271 (557)
T PRK12844 218 ALAAGVPLWTNTPLTELIVE--DGRVVGVVVV-RDGREVLIRARRGVLLASGGFGHN 271 (557)
T ss_pred HHhCCCEEEeCCEEEEEEEe--CCEEEEEEEE-ECCeEEEEEecceEEEecCCccCC
Confidence 34678999999999999987 6799999997 467778899977899999999873
No 12
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.30 E-value=0.0014 Score=56.49 Aligned_cols=61 Identities=25% Similarity=0.342 Sum_probs=49.9
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 76 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgi 76 (152)
.+.+++++.++.|++|+.+ +++++||.+.+.++....+++ +.||||+|.+..++-|+.+-.
T Consensus 142 ~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a-~~VIlAtGg~~~n~~~~~~~~ 202 (466)
T PRK08274 142 ERLGVEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRA-KAVVLAAGGFESNREWLREAW 202 (466)
T ss_pred HHCCCEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEEC-CEEEECCCCCCCCHHHHHhhc
Confidence 4568999999999999876 678999998645566677888 799999999998877766543
No 13
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.24 E-value=0.0013 Score=55.52 Aligned_cols=51 Identities=29% Similarity=0.490 Sum_probs=41.4
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccC
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~t 67 (152)
+.+++++.++.|++|+.+ +++|+||.+.+ .+|+.++++| +.||||+|.+..
T Consensus 153 ~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A-~aVIlAtGG~~~ 204 (417)
T PF00890_consen 153 EAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKA-KAVILATGGFGG 204 (417)
T ss_dssp HTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEE-SEEEE----BGG
T ss_pred hcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEee-eEEEeccCcccc
Confidence 445999999999999998 67999999995 5688889999 499999999999
No 14
>PRK07121 hypothetical protein; Validated
Probab=97.21 E-value=0.0018 Score=56.40 Aligned_cols=54 Identities=33% Similarity=0.477 Sum_probs=45.0
Q ss_pred hcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccC
Q psy17300 12 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 12 ~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~t 67 (152)
..+.++++++++.|++|+.++ +++++||.+. .++..+.++|+|.||||+|.+..
T Consensus 187 ~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~-~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 187 AAALGVQIRYDTRATRLIVDD-DGRVVGVEAR-RYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred HHhCCCEEEeCCEEEEEEECC-CCCEEEEEEE-eCCcEEEEEeCCEEEECCCCcCc
Confidence 346789999999999998874 4689999997 45667789987899999999875
No 15
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.18 E-value=0.0019 Score=57.72 Aligned_cols=54 Identities=26% Similarity=0.372 Sum_probs=45.5
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChH
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR 69 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~ 69 (152)
.+.+++|++++.|++|+.+ +++|+||.+. .+++++.++|+|-||||+|.++...
T Consensus 228 ~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~-~~g~~~~i~a~kaVILAtGGf~~n~ 281 (564)
T PRK12845 228 LRAGIPIWTETSLVRLTDD--GGRVTGAVVD-HRGREVTVTARRGVVLAAGGFDHDM 281 (564)
T ss_pred HHCCCEEEecCEeeEEEec--CCEEEEEEEE-ECCcEEEEEcCCEEEEecCCccccH
Confidence 4578999999999999865 5799999887 4677778889889999999999653
No 16
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.90 E-value=0.0056 Score=54.72 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=45.8
Q ss_pred hcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 12 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 12 ~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
..+.+++++.++.|++|+.+ +++++||.+.+ ++..+.++|++.||||+|++..-.-|
T Consensus 227 a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~-~~~~~~i~a~k~VVlAtGg~~~n~~~ 283 (581)
T PRK06134 227 AEDLGVRIWESAPARELLRE--DGRVAGAVVET-PGGLQEIRARKGVVLAAGGFPHDPAR 283 (581)
T ss_pred HHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEE-CCcEEEEEeCCEEEEcCCCcccCHHH
Confidence 34568999999999999877 67999999874 45566788877999999999864333
No 17
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.89 E-value=0.0046 Score=53.33 Aligned_cols=54 Identities=15% Similarity=0.313 Sum_probs=43.4
Q ss_pred hhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccC
Q psy17300 10 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 10 ~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~t 67 (152)
.+.++++++|+.++.|++|+.+ ++++.||.+.+ ++..+.++| +.||||+|.+..
T Consensus 137 ~~~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~~-~g~~~~i~A-k~VILAtGG~~~ 190 (433)
T PRK06175 137 KVKKRKNITIIENCYLVDIIEN--DNTCIGAICLK-DNKQINIYS-KVTILATGGIGG 190 (433)
T ss_pred HHHhcCCCEEEECcEeeeeEec--CCEEEEEEEEE-CCcEEEEEc-CeEEEccCcccc
Confidence 3445679999999999999876 57899988763 555567888 799999999775
No 18
>PLN02815 L-aspartate oxidase
Probab=96.86 E-value=0.004 Score=56.01 Aligned_cols=56 Identities=11% Similarity=0.219 Sum_probs=45.1
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCC--eEEEEEEEc-CCCcEEEEEeCcEEEEccCCccC
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKT--KVTGVEFRN-PQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~--~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~t 67 (152)
+.+.++++++.++.+++|+.+++++ +|.||.+.+ .+|..+.++| |.||||+|.+..
T Consensus 165 ~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 223 (594)
T PLN02815 165 VKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFIS-KVTLLASGGAGH 223 (594)
T ss_pred HHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEe-ceEEEcCCccee
Confidence 4445799999999999999864344 499999875 3677778888 899999999874
No 19
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=96.85 E-value=0.0054 Score=54.70 Aligned_cols=52 Identities=19% Similarity=0.175 Sum_probs=44.8
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~t 67 (152)
.+.+++|+.++.|++|+.+ +++|.||.+.+ .+|..+.++| |.||||+|.+..
T Consensus 130 ~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~A-kaVILATGG~~~ 182 (565)
T TIGR01816 130 LKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRA-KAVVLATGGYGR 182 (565)
T ss_pred HhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEe-CeEEECCCCccc
Confidence 3678999999999999986 68999999865 4677788998 799999999986
No 20
>PRK12839 hypothetical protein; Provisional
Probab=96.85 E-value=0.0058 Score=54.68 Aligned_cols=53 Identities=34% Similarity=0.530 Sum_probs=43.4
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~t 67 (152)
.+.+++|+.++.|++|+.++ +++|+||.+.+.++ +..+.+.|.||||+|++..
T Consensus 225 ~~~Gv~i~~~t~v~~Li~~~-~g~V~GV~~~~~~g-~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 225 DDLGVDLRVSTSATSLTTDK-NGRVTGVRVQGPDG-AVTVEATRGVVLATGGFPN 277 (572)
T ss_pred HHCCCEEEcCCEEEEEEECC-CCcEEEEEEEeCCC-cEEEEeCCEEEEcCCCccc
Confidence 45689999999999998764 57999999875445 4556676899999999987
No 21
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.82 E-value=0.0057 Score=54.63 Aligned_cols=53 Identities=21% Similarity=0.210 Sum_probs=45.4
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~t 67 (152)
.+.+++++.++.+++|+.++ +++|.||.+.+ .+|..+.++| |.||||+|.+..
T Consensus 137 ~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 190 (570)
T PRK05675 137 LKNGTTFLNEWYAVDLVKNQ-DGAVVGVIAICIETGETVYIKS-KATVLATGGAGR 190 (570)
T ss_pred hccCCEEEECcEEEEEEEcC-CCeEEEEEEEEcCCCcEEEEec-CeEEECCCCccc
Confidence 35789999999999999864 57999999875 4677788998 799999999985
No 22
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.79 E-value=0.0068 Score=54.18 Aligned_cols=53 Identities=25% Similarity=0.324 Sum_probs=45.0
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccCh
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP 68 (152)
.+.++++++++.|++|+.+ +++++||.+. .+++.+.++|++.||||+|++..-
T Consensus 232 ~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~-~~g~~~~i~A~~~VVlAtGg~~~n 284 (578)
T PRK12843 232 RARGVRILTQTDVESLETD--HGRVIGATVV-QGGVRRRIRARGGVVLATGGFNRH 284 (578)
T ss_pred HhCCCEEEeCCEEEEEEee--CCEEEEEEEe-cCCeEEEEEccceEEECCCCcccC
Confidence 4578999999999999876 6799999987 466677888878999999999874
No 23
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.76 E-value=0.0069 Score=51.77 Aligned_cols=54 Identities=28% Similarity=0.327 Sum_probs=43.0
Q ss_pred hcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccC
Q psy17300 12 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 12 ~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~t 67 (152)
..+.+++++.++.|++|+.++ +++++||.+.+.++..+.+.+ +.||+|+|.+..
T Consensus 140 ~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~~~a-~~VVlAtGg~~~ 193 (439)
T TIGR01813 140 AKKEGIDTRLNSKVEDLIQDD-QGTVVGVVVKGKGKGIYIKAA-KAVVLATGGFGS 193 (439)
T ss_pred HHHcCCEEEeCCEeeEeEECC-CCcEEEEEEEeCCCeEEEEec-ceEEEecCCCCC
Confidence 345689999999999999864 568999999854554455666 899999998876
No 24
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.76 E-value=0.0062 Score=53.92 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=44.7
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~t 67 (152)
.+.++++++++.|++|+.++ +++++||.+.+ .++..+.++| |.||||+|.+..
T Consensus 145 ~~~gv~i~~~t~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 198 (543)
T PRK06263 145 IKERIKILEEVMAIKLIVDE-NREVIGAIFLDLRNGEIFPIYA-KATILATGGAGQ 198 (543)
T ss_pred hcCCCEEEeCeEeeeeEEeC-CcEEEEEEEEECCCCcEEEEEc-CcEEECCCCCCC
Confidence 45789999999999998874 45699998876 5677778988 799999999985
No 25
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.69 E-value=0.0074 Score=54.71 Aligned_cols=53 Identities=26% Similarity=0.344 Sum_probs=45.0
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcC-CCcEEEEEeCcEEEEccCCccCh
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~-~g~~~~~~a~k~VIlaaGai~tP 68 (152)
.+.+++++.++.|++|+.+ +++|+||.+.+. +|..+.+.| |.||||+|.+...
T Consensus 181 ~~~gV~i~~~t~v~~Li~d--~g~V~GV~~~~~~~g~~~~i~A-kaVVLATGG~g~~ 234 (640)
T PRK07573 181 AAGTVKMYTRTEMLDLVVV--DGRARGIVARNLVTGEIERHTA-DAVVLATGGYGNV 234 (640)
T ss_pred HhcCCEEEeceEEEEEEEe--CCEEEEEEEEECCCCcEEEEEC-CEEEECCCCcccC
Confidence 4678999999999999887 579999999863 566677888 7999999999873
No 26
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.67 E-value=0.0077 Score=54.23 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=43.6
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcC-CCcEEEEEeCcEEEEccCCccC
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~-~g~~~~~~a~k~VIlaaGai~t 67 (152)
.++++++.++.|++|+.++ +++|+||.+.+. ++..+.++| |.||||+|.+..
T Consensus 145 ~~gV~i~~~t~v~~Li~dd-~grV~GV~~~~~~~g~~~~i~A-kaVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVD-GNRARGIIARNLVTGEIETHSA-DAVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEc-CEEEECCCCCcC
Confidence 3589999999999999864 569999999863 566677888 799999999875
No 27
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.61 E-value=0.0091 Score=53.64 Aligned_cols=53 Identities=23% Similarity=0.189 Sum_probs=44.7
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~t 67 (152)
.+.++++++++.|++|+.++ +++|.||.+.+ .+|..+.+.| |.||||+|.++.
T Consensus 160 ~~~gi~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 213 (598)
T PRK09078 160 LKHNAEFFIEYFALDLIMDD-GGVCRGVVAWNLDDGTLHRFRA-HMVVLATGGYGR 213 (598)
T ss_pred hhcCCEEEEeEEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEc-CEEEECCCCCcc
Confidence 35789999999999998873 47999999865 4677778888 799999999986
No 28
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.57 E-value=0.011 Score=52.98 Aligned_cols=53 Identities=21% Similarity=0.198 Sum_probs=44.9
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~t 67 (152)
...++++++++.|++|+.++ +++|.||.+.+ .+|..+.++| |.||||+|.+..
T Consensus 154 ~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 207 (588)
T PRK08958 154 LKNHTTIFSEWYALDLVKNQ-DGAVVGCTAICIETGEVVYFKA-RATVLATGGAGR 207 (588)
T ss_pred hhcCCEEEeCcEEEEEEECC-CCEEEEEEEEEcCCCcEEEEEc-CeEEECCCCccc
Confidence 35789999999999998864 57999999865 4677778998 799999999985
No 29
>PRK07395 L-aspartate oxidase; Provisional
Probab=96.56 E-value=0.0059 Score=54.43 Aligned_cols=55 Identities=15% Similarity=0.267 Sum_probs=44.3
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccC
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~t 67 (152)
+.++++++++.++.|++|+.++++++|.||.+. .++..+.++| |.||||+|.+..
T Consensus 144 ~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~-~~g~~~~i~A-kaVILATGG~~~ 198 (553)
T PRK07395 144 VLQRPNIEIISQALALSLWLEPETGRCQGISLL-YQGQITWLRA-GAVILATGGGGQ 198 (553)
T ss_pred HhhcCCcEEEECcChhhheecCCCCEEEEEEEE-ECCeEEEEEc-CEEEEcCCCCcc
Confidence 334578999999999999887434799999887 3666667888 799999999764
No 30
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.53 E-value=0.012 Score=52.43 Aligned_cols=50 Identities=20% Similarity=0.155 Sum_probs=43.2
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcC-CCcEEEEEeCcEEEEccCCcc
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSIN 66 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~-~g~~~~~~a~k~VIlaaGai~ 66 (152)
+.+++++.++.+++|+.+ +++|+||.+.+. ++..+.++| |.||||+|.+.
T Consensus 148 ~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~ 198 (566)
T PRK06452 148 GLNVDFYNEWFSLDLVTD--NKKVVGIVAMQMKTLTPFFFKT-KAVVLATGGMG 198 (566)
T ss_pred hCCCEEEeCcEEEEEEEE--CCEEEEEEEEECCCCeEEEEEe-CeEEECCCccc
Confidence 468999999999999987 689999999864 456678888 89999999998
No 31
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=96.49 E-value=0.011 Score=53.28 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=44.8
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccCh
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~tP 68 (152)
.+.+++++.++.|++|+.++ +++|.||.+.+ .+|+.+.++| |.||||+|.+...
T Consensus 177 ~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~~ 231 (617)
T PTZ00139 177 LKYDCNFFIEYFALDLIMDE-DGECRGVIAMSMEDGSIHRFRA-HYTVIATGGYGRA 231 (617)
T ss_pred HhCCCEEEeceEEEEEEECC-CCEEEEEEEEECCCCeEEEEEC-CcEEEeCCCCccc
Confidence 35789999999999999843 67999999865 4677778888 7999999999763
No 32
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=96.47 E-value=0.019 Score=51.29 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=43.5
Q ss_pred hcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccC
Q psy17300 12 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 12 ~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~t 67 (152)
..+.++++++++.|++|+.+ +++++||.+.+. +.+..+++++.||||+|.+..
T Consensus 224 ~~~~Gv~i~~~~~v~~l~~~--~g~V~GV~~~~~-~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 224 ALDLGIPILTGTPARELLTE--GGRVVGARVIDA-GGERRITARRGVVLACGGFSH 276 (574)
T ss_pred HHhCCCEEEeCCEEEEEEee--CCEEEEEEEEcC-CceEEEEeCCEEEEcCCCccc
Confidence 34678999999999999887 679999998843 344568887789999999973
No 33
>PRK09077 L-aspartate oxidase; Provisional
Probab=96.41 E-value=0.014 Score=51.60 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=45.5
Q ss_pred hhcCCCcEEEcCcEEEEEEEeC----CCCeEEEEEEEcC-CCcEEEEEeCcEEEEccCCccC
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDE----TKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~----~~~~~~gV~~~~~-~g~~~~~~a~k~VIlaaGai~t 67 (152)
+.+.+|++++.++.|++++.++ +++++.||.+.+. ++..+.++| +.||||+|.+..
T Consensus 148 ~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~ 208 (536)
T PRK09077 148 ARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRA-KFVVLATGGASK 208 (536)
T ss_pred HHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEec-CeEEECCCCCCC
Confidence 4456799999999999998763 1379999998763 566778888 799999999885
No 34
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.38 E-value=0.014 Score=53.12 Aligned_cols=52 Identities=21% Similarity=0.202 Sum_probs=45.0
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~t 67 (152)
.+.+++++.++.|++|+.+ ++++.||.+.+ .+|..+.+.| |.||||+|.+..
T Consensus 169 ~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~G~~~~i~A-kaVVLATGG~g~ 221 (657)
T PRK08626 169 IKLGVPVHDRKEAIALIHD--GKRCYGAVVRCLITGELRAYVA-KATLIATGGYGR 221 (657)
T ss_pred HhCCCEEEeeEEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEc-CeEEECCCcccC
Confidence 4578999999999999987 68999999986 4677778888 799999999885
No 35
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=96.37 E-value=0.02 Score=51.37 Aligned_cols=54 Identities=22% Similarity=0.226 Sum_probs=45.0
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccC
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~t 67 (152)
+.+.++++++.++.|++|+.+ +++|.||.+.+ .+|..+.++| |.||||+|.+..
T Consensus 142 ~~~~~~i~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 196 (580)
T TIGR01176 142 SLTYPQIMRYDEWFVTDLLVD--DGRVCGLVAIEMAEGRLVTILA-DAVVLATGGAGR 196 (580)
T ss_pred HHhcCCCEEEeCeEEEEEEee--CCEEEEEEEEEcCCCcEEEEec-CEEEEcCCCCcc
Confidence 334578999999999999987 67999999875 4677778888 799999999885
No 36
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.36 E-value=0.018 Score=50.53 Aligned_cols=53 Identities=23% Similarity=0.350 Sum_probs=42.9
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccCh
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP 68 (152)
...++++++++.|++|+.+ +++++||.+...++....++| +.||+|+|.+...
T Consensus 201 ~~~gv~i~~~t~v~~l~~~--~g~V~Gv~~~~~~g~~~~i~a-~~VVlAtGG~~~n 253 (506)
T PRK06481 201 QERKIPLFVNADVTKITEK--DGKVTGVKVKINGKETKTISS-KAVVVTTGGFGAN 253 (506)
T ss_pred HHcCCeEEeCCeeEEEEec--CCEEEEEEEEeCCCeEEEEec-CeEEEeCCCcccC
Confidence 3567999999999999765 678999998754455667888 7999999988754
No 37
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=96.32 E-value=0.016 Score=52.56 Aligned_cols=53 Identities=21% Similarity=0.209 Sum_probs=44.8
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccCh
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~tP 68 (152)
+.+++++.++.+++|+.++ +++|.||.+.+ .+|+.+.++| |.||||+|.+...
T Consensus 199 ~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~~ 252 (635)
T PLN00128 199 KHNTQFFVEYFALDLIMDS-DGACQGVIALNMEDGTLHRFRA-HSTILATGGYGRA 252 (635)
T ss_pred hCCCEEEEeeEEEEEEEcC-CCEEEEEEEEEcCCCeEEEEEc-CeEEECCCCCccc
Confidence 5689999999999998764 57999999876 3677778888 7999999999864
No 38
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=96.31 E-value=0.023 Score=50.98 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=44.4
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccC
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~t 67 (152)
+.+.++++++.++.|++|+.+ ++++.||.+.+ .+|..+.++| |.||||+|.+..
T Consensus 143 ~~~~~~i~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 197 (582)
T PRK09231 143 SLKYPQIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRA-NAVVMATGGAGR 197 (582)
T ss_pred hhcCCCcEEEeCeEEEEEEEe--CCEEEEEEEEEcCCCcEEEEEC-CEEEECCCCCcC
Confidence 334468999999999999987 67999998865 4566678888 799999999874
No 39
>PRK08275 putative oxidoreductase; Provisional
Probab=96.26 E-value=0.02 Score=50.91 Aligned_cols=53 Identities=19% Similarity=0.298 Sum_probs=43.1
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~t 67 (152)
.+.+++++.++.|++|+.++ ++++.||.+.+ .+|..+.++| |.||||+|++..
T Consensus 148 ~~~gv~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~~ 201 (554)
T PRK08275 148 KRARVLITNRIMATRLLTDA-DGRVAGALGFDCRTGEFLVIRA-KAVILCCGAAGR 201 (554)
T ss_pred HHCCCEEEcceEEEEEEEcC-CCeEEEEEEEecCCCcEEEEEC-CEEEECCCCccc
Confidence 45789999999999998864 46899998865 3566667888 799999999853
No 40
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.25 E-value=0.017 Score=55.82 Aligned_cols=53 Identities=25% Similarity=0.443 Sum_probs=44.9
Q ss_pred CCcEEEcCcEEEEEEEeCC----C---CeEEEEEEEcC---CCcEEEEEeCcEEEEccCCccCh
Q psy17300 15 NTVQVSKNSEVTKLCFDET----K---TKVTGVEFRNP---QGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 15 ~nl~l~~~~~V~ri~~~~~----~---~~~~gV~~~~~---~g~~~~~~a~k~VIlaaGai~tP 68 (152)
.+++|++++.|++|+.+++ + ++|+||.+.+. +|..+.++| |.||||+|.++.-
T Consensus 560 ~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~A-kaVILATGGf~~N 622 (1167)
T PTZ00306 560 GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLA-DAVILATGGFSND 622 (1167)
T ss_pred CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEe-ceEEEecCCcccC
Confidence 5899999999999998742 2 38999999865 677788999 7999999999974
No 41
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.24 E-value=0.023 Score=50.42 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=40.6
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc--CC------------CcEEEEEeCcEEEEccCCccC
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN--PQ------------GKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~--~~------------g~~~~~~a~k~VIlaaGai~t 67 (152)
..++++++++.+++|+.+ +++|+||.+.+ .+ +..+.++| |.||||+|.+..
T Consensus 164 ~~gv~i~~~t~~~~Li~~--~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~A-kaVILATGGf~~ 228 (549)
T PRK12834 164 RGLVRFRFRHRVDELVVT--DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRA-QAVIVTSGGIGG 228 (549)
T ss_pred hCCceEEecCEeeEEEEe--CCEEEEEEEEecccccccccccccccccceEEEec-CEEEEeCCCccc
Confidence 456999999999999987 68999999742 11 23467888 799999999984
No 42
>KOG2404|consensus
Probab=96.23 E-value=0.0059 Score=51.77 Aligned_cols=51 Identities=29% Similarity=0.430 Sum_probs=43.8
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccC
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~t 67 (152)
...++|.+++.|.+|+.+ ++++.||+|.|.+|+...+.. ..||+|.|.+.-
T Consensus 157 pe~~ki~~nskvv~il~n--~gkVsgVeymd~sgek~~~~~-~~VVlatGGf~y 207 (477)
T KOG2404|consen 157 PELVKILLNSKVVDILRN--NGKVSGVEYMDASGEKSKIIG-DAVVLATGGFGY 207 (477)
T ss_pred hHHHhhhhcceeeeeecC--CCeEEEEEEEcCCCCccceec-CceEEecCCcCc
Confidence 334899999999999844 789999999998888777777 699999999885
No 43
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.18 E-value=0.021 Score=51.65 Aligned_cols=50 Identities=24% Similarity=0.275 Sum_probs=41.8
Q ss_pred CcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccCh
Q psy17300 16 TVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 16 nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~tP 68 (152)
|++++.++.|++|+.+ ++++.||.+.+ .++..+.++| +.||||+|+++..
T Consensus 165 ~v~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~~ 215 (626)
T PRK07803 165 RIKVFAECTITELLKD--GGRIAGAFGYWRESGRFVLFEA-PAVVLATGGIGKS 215 (626)
T ss_pred ceEEEeCCEEEEEEEE--CCEEEEEEEEECCCCeEEEEEc-CeEEECCCcccCC
Confidence 4999999999999887 67899998765 4566677888 7999999997753
No 44
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=96.17 E-value=0.01 Score=52.38 Aligned_cols=59 Identities=24% Similarity=0.410 Sum_probs=47.1
Q ss_pred hhHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCcc
Q psy17300 6 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSIN 66 (152)
Q Consensus 6 ~~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~ 66 (152)
+.+..++++||++++.++.+.+|+.++ +..+.||.+.+.++....+.| +.||||+|.++
T Consensus 138 ~L~~~v~~~p~I~v~e~~~a~~li~~~-~~~~~Gv~~~~~~~~~~~~~a-~~vVLATGG~g 196 (518)
T COG0029 138 ALLKKVRNRPNITVLEGAEALDLIIED-GIGVAGVLVLNRNGELGTFRA-KAVVLATGGLG 196 (518)
T ss_pred HHHHHHhcCCCcEEEecchhhhhhhcC-CceEeEEEEecCCCeEEEEec-CeEEEecCCCc
Confidence 445557788999999999999999884 336669999855445678888 79999999876
No 45
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.09 E-value=0.028 Score=49.88 Aligned_cols=51 Identities=25% Similarity=0.264 Sum_probs=43.0
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccC
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~t 67 (152)
+.+++++.++.|++|+.+ +++++||.+.+ .+|....++| |.||||+|.+..
T Consensus 141 ~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGG~~~ 192 (566)
T TIGR01812 141 KLGVSFFNEYFALDLIHD--DGRVRGVVAYDLKTGEIVFFRA-KAVVLATGGYGR 192 (566)
T ss_pred HcCCEEEeccEEEEEEEe--CCEEEEEEEEECCCCcEEEEEC-CeEEECCCcccC
Confidence 458999999999999887 67999999875 3566677888 799999999874
No 46
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.07 E-value=0.031 Score=49.88 Aligned_cols=54 Identities=15% Similarity=0.162 Sum_probs=43.9
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcC-CCcEEEEEeCcEEEEccCCccC
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~-~g~~~~~~a~k~VIlaaGai~t 67 (152)
+....+++++.++.|++|+.+ ++++.||.+.+. ++..+.++| +.||||+|++..
T Consensus 147 ~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~~ 201 (577)
T PRK06069 147 ALRFDNIHFYDEHFVTSLIVE--NGVFKGVTAIDLKRGEFKVFQA-KAGIIATGGAGR 201 (577)
T ss_pred HHhcCCCEEEECCEEEEEEEE--CCEEEEEEEEEcCCCeEEEEEC-CcEEEcCchhcc
Confidence 334478999999999999877 579999988753 565667888 799999999864
No 47
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.99 E-value=0.037 Score=49.45 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=43.0
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~t 67 (152)
.+.++++++++.|++|+.+ ++++.||...+ .++..+.++| |.||||+|++..
T Consensus 146 ~~~gi~i~~~t~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVVlATGG~~~ 198 (575)
T PRK05945 146 RRYGVTIYDEWYVMRLILE--DNQAKGVVMYHIADGRLEVVRA-KAVMFATGGYGR 198 (575)
T ss_pred hhCCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCeEEEEEC-CEEEECCCCCcC
Confidence 4578999999999999877 67999998754 3566667888 799999999875
No 48
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=95.97 E-value=0.033 Score=48.62 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=42.8
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccC
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~t 67 (152)
+.+.++++++.++.|++|+.+ ++++.||.+.+. +....++| +.||+|+|++..
T Consensus 138 ~~~~~gi~i~~~~~v~~l~~~--~g~v~Gv~~~~~-~~~~~i~A-~~VVlAtGG~~~ 190 (488)
T TIGR00551 138 ALNHPNIRIIEGENALDLLIE--TGRVVGVWVWNR-ETVETCHA-DAVVLATGGAGK 190 (488)
T ss_pred HHhcCCcEEEECeEeeeeecc--CCEEEEEEEEEC-CcEEEEEc-CEEEECCCcccC
Confidence 333479999999999999876 578999988753 44567888 799999999875
No 49
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=95.95 E-value=0.041 Score=49.63 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=42.4
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCcc
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSIN 66 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~ 66 (152)
+.+.++++++.++.|++|+.+ ++++.||.+.+ .++..+.++| +.||||+|++.
T Consensus 142 a~~~ggV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~ 195 (608)
T PRK06854 142 AKKALGDNVLNRVFITDLLVD--DNRIAGAVGFSVRENKFYVFKA-KAVIVATGGAA 195 (608)
T ss_pred HHhcCCCEEEeCCEEEEEEEe--CCEEEEEEEEEccCCcEEEEEC-CEEEECCCchh
Confidence 334456999999999999877 57999998754 3566667888 79999999876
No 50
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.93 E-value=0.034 Score=49.93 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=43.2
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccC
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~t 67 (152)
..+++++.++.+++|+.++ ++++.||.+.+ .+++.+.++| |.||||+|.+..
T Consensus 160 ~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 212 (591)
T PRK07057 160 AAKTQFFVEWMALDLIRDA-DGDVLGVTALEMETGDVYILEA-KTTLFATGGAGR 212 (591)
T ss_pred hcCCEEEeCcEEEEEEEcC-CCeEEEEEEEEcCCCeEEEEEC-CeEEECCCCccc
Confidence 5689999999999999864 57899999875 3566667777 799999999885
No 51
>PRK07512 L-aspartate oxidase; Provisional
Probab=95.93 E-value=0.022 Score=50.23 Aligned_cols=53 Identities=28% Similarity=0.434 Sum_probs=42.3
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccC
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~t 67 (152)
+.++++++++.++.|++|+.+ +++++||.+.+ .+..+.++| +.||||+|.+..
T Consensus 146 ~~~~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~-~~~~~~i~A-k~VVLATGG~~~ 198 (513)
T PRK07512 146 VRATPSITVLEGAEARRLLVD--DGAVAGVLAAT-AGGPVVLPA-RAVVLATGGIGG 198 (513)
T ss_pred HHhCCCCEEEECcChhheeec--CCEEEEEEEEe-CCeEEEEEC-CEEEEcCCCCcC
Confidence 334568999999999998866 67999999874 344557888 799999999874
No 52
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.92 E-value=0.036 Score=49.61 Aligned_cols=54 Identities=24% Similarity=0.225 Sum_probs=43.6
Q ss_pred cCCCcEEEcCcEEEEEEEeCC--CCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDET--KTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~--~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~t 67 (152)
...+++++.++.|++|+.+++ ++++.||.+.+ .++..+.++| |.||||+|.+..
T Consensus 151 ~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 207 (583)
T PRK08205 151 VKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHA-KAVVFATGGSGR 207 (583)
T ss_pred HhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEe-CeEEECCCCCcc
Confidence 457899999999999987631 27899998864 3566667888 799999999884
No 53
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=95.92 E-value=0.031 Score=50.33 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=44.6
Q ss_pred hcCCCcEEEcCcEEEEEEEeCCC--CeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccCh
Q psy17300 12 KDKNTVQVSKNSEVTKLCFDETK--TKVTGVEFRN-PQGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 12 ~~~~nl~l~~~~~V~ri~~~~~~--~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~tP 68 (152)
....++++++++.|++|.++.++ ++|+||.+.. ..++...+.+++.||++.|.+..-
T Consensus 236 Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~n 295 (576)
T PRK13977 236 LEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITES 295 (576)
T ss_pred HHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccc
Confidence 35679999999999999986323 7899999973 133455678889999999988653
No 54
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.90 E-value=0.027 Score=45.39 Aligned_cols=55 Identities=35% Similarity=0.497 Sum_probs=42.1
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 76 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgi 76 (152)
.+.+++++.++.|++|..+ +++++||... +| .++| +.||+|+|+ .+++|+..+++
T Consensus 158 ~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~~--~g---~i~a-d~vV~a~G~-~s~~l~~~~~~ 212 (358)
T PF01266_consen 158 QRAGVEIRTGTEVTSIDVD--GGRVTGVRTS--DG---EIRA-DRVVLAAGA-WSPQLLPLLGL 212 (358)
T ss_dssp HHTT-EEEESEEEEEEEEE--TTEEEEEEET--TE---EEEE-CEEEE--GG-GHHHHHHTTTT
T ss_pred HHhhhhccccccccchhhc--cccccccccc--cc---cccc-ceeEecccc-cceeeeecccc
Confidence 3458999999999999998 7788888875 34 3778 799999996 68888888765
No 55
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=95.86 E-value=0.061 Score=47.31 Aligned_cols=70 Identities=20% Similarity=0.300 Sum_probs=52.7
Q ss_pred hhhHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccChHHHhhCCCCC
Q psy17300 5 SIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQQSGVGD 78 (152)
Q Consensus 5 ~~~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgig~ 78 (152)
+.++..+...+++++.++++|+.|....+ .-..|.+.| .++....++| +-|+++||+- +=.||+.|||..
T Consensus 185 r~l~~~l~~~~~~~~~~~~eV~~i~r~~d--g~W~v~~~~~~~~~~~~v~a-~FVfvGAGG~-aL~LLqksgi~e 255 (488)
T PF06039_consen 185 RQLVEYLQKQKGFELHLNHEVTDIKRNGD--GRWEVKVKDLKTGEKREVRA-KFVFVGAGGG-ALPLLQKSGIPE 255 (488)
T ss_pred HHHHHHHHhCCCcEEEecCEeCeeEECCC--CCEEEEEEecCCCCeEEEEC-CEEEECCchH-hHHHHHHcCChh
Confidence 34555566678999999999999987743 334566655 4577788999 7999999985 666889999843
No 56
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.83 E-value=0.015 Score=43.83 Aligned_cols=63 Identities=24% Similarity=0.283 Sum_probs=40.0
Q ss_pred hhhHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCC
Q psy17300 5 SIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSG 75 (152)
Q Consensus 5 ~~~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sg 75 (152)
..||....++-+++++.++.|+++..+. +. .-|.+. ++ ..+++ +.||+|.|....|+++..-|
T Consensus 85 ~~yl~~~~~~~~l~i~~~~~V~~v~~~~--~~-w~v~~~--~~--~~~~a-~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 85 LDYLQEYAERFGLEIRFNTRVESVRRDG--DG-WTVTTR--DG--RTIRA-DRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHHHHHHTTGGEETS--EEEEEEET--TT-EEEEET--TS---EEEE-EEEEE---SSCSB---S-TT
T ss_pred HHHHHHHHhhcCcccccCCEEEEEEEec--cE-EEEEEE--ec--ceeee-eeEEEeeeccCCCCcccccc
Confidence 3577777777788999999999999884 33 445554 44 55667 79999999999999987665
No 57
>PRK08071 L-aspartate oxidase; Provisional
Probab=95.80 E-value=0.032 Score=49.17 Aligned_cols=50 Identities=26% Similarity=0.330 Sum_probs=43.0
Q ss_pred CCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccC
Q psy17300 15 NTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 15 ~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~t 67 (152)
.+++++.++.|++|+.+ ++++.||.+.+.+++.+.++| +.||||+|++..
T Consensus 142 ~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~g~~~~i~A-k~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIE--NGRCIGVLTKDSEGKLKRYYA-DYVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeec--CCEEEEEEEEECCCcEEEEEc-CeEEEecCCCcc
Confidence 68999999999999876 678999998765666677888 799999999885
No 58
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.67 E-value=0.044 Score=49.18 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=42.3
Q ss_pred CCcEEEcCcEEEEEEEeCCCCeEEEEEEEcC-CCcEEEEEeCcEEEEccCCccC
Q psy17300 15 NTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 15 ~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~-~g~~~~~~a~k~VIlaaGai~t 67 (152)
.+++++.++.+++++.++ +++|.||.+.+. ++..+.+.| |.||||+|.+..
T Consensus 150 ~~i~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 201 (589)
T PRK08641 150 GLVTKYEGWEFLGAVLDD-EGVCRGIVAQDLFTMEIESFPA-DAVIMATGGPGI 201 (589)
T ss_pred CCcEEEeeEEEEEEEECC-CCEEEEEEEEECCCCcEEEEEC-CEEEECCCCCcC
Confidence 348999999999999764 579999999864 455567888 799999999986
No 59
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=95.20 E-value=0.1 Score=44.59 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=41.9
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
.+.+++|++++.|++|+.++++++++||... .++ ..+++ |.||||+|.+...+=|+
T Consensus 134 ~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~-~~~--~~i~a-k~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 134 ERLGVEIRYGIAVDRIPPEAFDGAHDGPLTT-VGT--HRITT-QALVLAAGGLGANRDWL 189 (432)
T ss_pred HHcCCEEEeCCEEEEEEecCCCCeEEEEEEc-CCc--EEEEc-CEEEEcCCCcccCHHHH
Confidence 4568999999999999876324688898764 222 56778 79999999887655443
No 60
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=95.19 E-value=0.11 Score=47.20 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=42.2
Q ss_pred CCcEEEcCcEEEEEEEeCC-CCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccC
Q psy17300 15 NTVQVSKNSEVTKLCFDET-KTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 15 ~nl~l~~~~~V~ri~~~~~-~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~t 67 (152)
.+.+++.++.|++++.+++ +++|.||.+.+ .+|..+.++| |.||||+|.+..
T Consensus 139 ~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 192 (614)
T TIGR02061 139 ALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKA-KTVIVAAGGAVN 192 (614)
T ss_pred CCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEEC-CEEEECCCcccc
Confidence 3479999999999998642 27999999875 3566777888 799999999864
No 61
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.17 E-value=0.078 Score=49.90 Aligned_cols=50 Identities=16% Similarity=0.296 Sum_probs=42.5
Q ss_pred CCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccC
Q psy17300 15 NTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 15 ~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~t 67 (152)
.++++.+++.+++++.+ ++++.||.+.+ .+|..+.++| |.||||+|+++.
T Consensus 156 ~~i~~~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 206 (897)
T PRK13800 156 ERIRIENRLMPVRVLTE--GGRAVGAAALNTRTGEFVTVGA-KAVILATGPCGR 206 (897)
T ss_pred CCcEEEeceeeEEEEee--CCEEEEEEEEecCCCcEEEEEC-CEEEECCCcccc
Confidence 47999999999999876 67999999876 4677788888 899999999863
No 62
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=95.11 E-value=0.14 Score=44.94 Aligned_cols=59 Identities=25% Similarity=0.366 Sum_probs=47.2
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcC-CCcEEEEEeCcEEEEccCCccChHHHhhCCC
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRILQQSGV 76 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~-~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgi 76 (152)
+.+.+++.++.|++|..+ ++++.+|.+.+. +|....++| +.||.|+|+- +..|+...|+
T Consensus 140 ~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a-~~VVnAaG~w-a~~l~~~~g~ 199 (516)
T TIGR03377 140 EHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEA-QVVINAAGIW-AGRIAEYAGL 199 (516)
T ss_pred HcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEc-CEEEECCCcc-hHHHHHhcCC
Confidence 567999999999999876 678999998753 466678898 7999999965 6677766554
No 63
>PRK07804 L-aspartate oxidase; Provisional
Probab=94.64 E-value=0.15 Score=45.30 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=40.7
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc----CCCcEEEEEeCcEEEEccCCccC
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN----PQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~----~~g~~~~~~a~k~VIlaaGai~t 67 (152)
+.+++++.++.|++|+.++ ++++.||.+.+ ..+....++| |.||+|+|....
T Consensus 156 ~~gV~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~~~~~g~~~i~A-k~VIlATGG~~~ 211 (541)
T PRK07804 156 ADPLDIREHALALDLLTDG-TGAVAGVTLHVLGEGSPDGVGAVHA-PAVVLATGGLGQ 211 (541)
T ss_pred hCCCEEEECeEeeeeEEcC-CCeEEEEEEEeccCCCCCcEEEEEc-CeEEECCCCCCC
Confidence 4569999999999998774 46999998863 1223456888 799999999874
No 64
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=94.56 E-value=0.17 Score=45.93 Aligned_cols=61 Identities=26% Similarity=0.326 Sum_probs=46.3
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcC-CCcEEEEEeCcEEEEccCCccChHHHhhCC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRILQQSG 75 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~-~g~~~~~~a~k~VIlaaGai~tP~lLl~Sg 75 (152)
.+.+.+++.++.|++|..++.++++++|.+.|. +++.+.+++ +.||+|+|+. +..++...|
T Consensus 243 ~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a-~~VVnAaGaw-s~~l~~~~g 304 (627)
T PLN02464 243 ALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYA-KVVVNAAGPF-CDEVRKMAD 304 (627)
T ss_pred HhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEe-CEEEECCCHh-HHHHHHhcc
Confidence 356899999999999987632367899998763 566667888 7999999976 566665554
No 65
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=94.54 E-value=0.16 Score=45.23 Aligned_cols=60 Identities=28% Similarity=0.320 Sum_probs=46.6
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcC-CCcEEEEEeCcEEEEccCCccChHHHhhCCC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRILQQSGV 76 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~-~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgi 76 (152)
...+.++++++.|+.|..+ ++++++|.+.+. ++....++| +.||.|+|+- +..|+...|+
T Consensus 160 ~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A-~~VVnAaG~w-a~~l~~~~g~ 220 (546)
T PRK11101 160 KEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHA-PVVVNAAGIW-GQHIAEYADL 220 (546)
T ss_pred HhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEEC-CEEEECCChh-HHHHHHhcCC
Confidence 3567999999999999876 678999998763 455678998 7999999975 5666655443
No 66
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=94.46 E-value=0.47 Score=41.85 Aligned_cols=67 Identities=18% Similarity=0.307 Sum_probs=44.4
Q ss_pred hHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccChHHHhhCCCC
Q psy17300 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQQSGVG 77 (152)
Q Consensus 7 ~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgig 77 (152)
+...+.+.++++++.++.|+.|..++ ++.+ .|...+ .+|....++| +.||+|||+- +.+++..+|+.
T Consensus 189 L~~~a~~~Ggv~i~~~teV~~I~~~~-dg~~-~v~~~~~~~G~~~~i~A-~~VVvaAGg~-s~~L~~~~Gi~ 256 (494)
T PRK05257 189 LVGYLQKQGNFELQLGHEVRDIKRND-DGSW-TVTVKDLKTGEKRTVRA-KFVFIGAGGG-ALPLLQKSGIP 256 (494)
T ss_pred HHHHHHhCCCeEEEeCCEEEEEEECC-CCCE-EEEEEEcCCCceEEEEc-CEEEECCCcc-hHHHHHHcCCC
Confidence 34444444569999999999997653 3322 344432 2354446888 7999999984 66778787765
No 67
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=94.33 E-value=0.19 Score=43.70 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=44.5
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQS 74 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~S 74 (152)
.+.+.+++.++.|+++.++ ++++++|... ++....++| +.||||+|+..|..|+...
T Consensus 274 ~~~Gg~il~g~~V~~i~~~--~~~v~~V~t~--~g~~~~l~A-D~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 274 EQLGGVMLPGDRVLRAEFE--GNRVTRIHTR--NHRDIPLRA-DHFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHCCCEEEECcEEEEEEee--CCeEEEEEec--CCccceEEC-CEEEEccCCCcCHHHHhhc
Confidence 3557899999999999887 6788887654 343456888 5899999999888886544
No 68
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=94.04 E-value=0.27 Score=43.51 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=39.9
Q ss_pred CcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCCCC
Q psy17300 16 TVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGD 78 (152)
Q Consensus 16 nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgig~ 78 (152)
++++.+++.|+.|..+ ++....|.. .+| .++| +.||+|||+- +.+|+..+|++.
T Consensus 231 ~v~i~~~t~V~~I~~~--~~~~~~V~T--~~G---~i~A-~~VVvaAG~~-S~~La~~~Gi~~ 284 (497)
T PTZ00383 231 KISINLNTEVLNIERS--NDSLYKIHT--NRG---EIRA-RFVVVSACGY-SLLFAQKMGYGL 284 (497)
T ss_pred CEEEEeCCEEEEEEec--CCCeEEEEE--CCC---EEEe-CEEEECcChh-HHHHHHHhCCCC
Confidence 3899999999999765 334444543 234 4788 6999999975 778888888853
No 69
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=94.03 E-value=0.16 Score=43.70 Aligned_cols=53 Identities=28% Similarity=0.421 Sum_probs=40.6
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
+.+.+|++|+ +.+|+.|..+ ++++.||... +|. .+.+ +.||+|+|++.+..+.
T Consensus 105 l~~~~nl~i~-~~~V~~l~~e--~~~v~GV~~~--~g~--~~~a-~~vVlaTGtfl~G~~~ 157 (392)
T PF01134_consen 105 LESHPNLTII-QGEVTDLIVE--NGKVKGVVTK--DGE--EIEA-DAVVLATGTFLNGCIH 157 (392)
T ss_dssp HHTSTTEEEE-ES-EEEEEEC--TTEEEEEEET--TSE--EEEE-CEEEE-TTTGBTSEEE
T ss_pred HhcCCCeEEE-EcccceEEec--CCeEEEEEeC--CCC--EEec-CEEEEecccccCceee
Confidence 5567999997 6789999988 7899999885 553 5777 7999999996666555
No 70
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.50 E-value=0.16 Score=45.36 Aligned_cols=58 Identities=29% Similarity=0.383 Sum_probs=46.2
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccChHHHhhCCC
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQQSGV 76 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgi 76 (152)
..+.++++.+.|++++.+ ++ ++||++.| .+|+++.++| +.||-|+|.- +-.++...+.
T Consensus 176 ~~Ga~il~~~~v~~~~re--~~-v~gV~~~D~~tg~~~~ira-~~VVNAaGpW-~d~i~~~~~~ 234 (532)
T COG0578 176 EHGAEILTYTRVESLRRE--GG-VWGVEVEDRETGETYEIRA-RAVVNAAGPW-VDEILEMAGL 234 (532)
T ss_pred hcccchhhcceeeeeeec--CC-EEEEEEEecCCCcEEEEEc-CEEEECCCcc-HHHHHHhhcc
Confidence 567899999999999888 55 99999998 4588999999 7999998864 3445555443
No 71
>PLN02661 Putative thiazole synthesis
Probab=93.44 E-value=0.34 Score=41.30 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=42.7
Q ss_pred hHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc------CCC----cEEEEEeCcEEEEccCCcc
Q psy17300 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN------PQG----KTIKVNANREVVLAANSIN 66 (152)
Q Consensus 7 ~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~------~~g----~~~~~~a~k~VIlaaGai~ 66 (152)
++..+..++|++++.++.|+.++.+ ++++.||.+.. ..+ ....++| |.||+|+|.-+
T Consensus 178 Li~ka~~~~gVkI~~~t~V~DLI~~--~grVaGVVvnw~~v~~~~~~~s~~dp~~I~A-kaVVlATGh~g 244 (357)
T PLN02661 178 IMSKLLARPNVKLFNAVAAEDLIVK--GDRVGGVVTNWALVAQNHDTQSCMDPNVMEA-KVVVSSCGHDG 244 (357)
T ss_pred HHHHHHhcCCCEEEeCeEeeeEEec--CCEEEEEEeecchhhhccCCCCccceeEEEC-CEEEEcCCCCC
Confidence 3444556789999999999999987 67899998631 111 2356888 79999999644
No 72
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=93.34 E-value=0.44 Score=41.34 Aligned_cols=58 Identities=28% Similarity=0.240 Sum_probs=43.6
Q ss_pred HHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHH
Q psy17300 8 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 70 (152)
Q Consensus 8 l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~l 70 (152)
|.....+.++++++++.|.++..+ ++++..+.. .++....+++ +.||+|+|.+.+.-|
T Consensus 265 L~~~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~~--~~g~~~~i~A-D~VVLAtGrf~s~GL 322 (422)
T PRK05329 265 LRRAFERLGGRIMPGDEVLGAEFE--GGRVTAVWT--RNHGDIPLRA-RHFVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEe--eCCceEEEEC-CEEEEeCCCcccCce
Confidence 444444678999999999999876 456666652 3566677888 699999999877755
No 73
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=92.81 E-value=0.031 Score=48.07 Aligned_cols=63 Identities=19% Similarity=0.264 Sum_probs=0.0
Q ss_pred hHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCC
Q psy17300 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 76 (152)
Q Consensus 7 ~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgi 76 (152)
+|..+....+++|++++.|..+..+ ++++++|.+.+..| ..+++| +.||-|.| ...|+.++|.
T Consensus 95 ~l~~~l~e~gv~v~~~t~v~~v~~~--~~~i~~V~~~~~~g-~~~i~A-~~~IDaTG---~g~l~~~aG~ 157 (428)
T PF12831_consen 95 VLDEMLAEAGVEVLLGTRVVDVIRD--GGRITGVIVETKSG-RKEIRA-KVFIDATG---DGDLAALAGA 157 (428)
T ss_dssp ----------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc--cccccccccccccc-cccccc-cccccccc---cccccccccc
Confidence 4445555689999999999999988 78999999986555 778999 79999988 4677777774
No 74
>PRK06185 hypothetical protein; Provisional
Probab=92.44 E-value=0.93 Score=38.01 Aligned_cols=62 Identities=26% Similarity=0.275 Sum_probs=43.6
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCCCC
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGD 78 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgig~ 78 (152)
+...++++++.++.|+.+..+ ++.+++|.+...+| +..+++ +.||.|.|+-.. +-...|+..
T Consensus 118 ~~~~~~v~i~~~~~v~~~~~~--~~~v~~v~~~~~~g-~~~i~a-~~vI~AdG~~S~--vr~~~gi~~ 179 (407)
T PRK06185 118 ASAYPNFTLRMGAEVTGLIEE--GGRVTGVRARTPDG-PGEIRA-DLVVGADGRHSR--VRALAGLEV 179 (407)
T ss_pred HhhCCCcEEEeCCEEEEEEEe--CCEEEEEEEEcCCC-cEEEEe-CEEEECCCCchH--HHHHcCCCc
Confidence 334578999999999999877 56788888874344 356888 688888887543 333445543
No 75
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=92.27 E-value=1.2 Score=39.08 Aligned_cols=66 Identities=24% Similarity=0.292 Sum_probs=43.6
Q ss_pred hHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccChHHHhhCCCC
Q psy17300 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQQSGVG 77 (152)
Q Consensus 7 ~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgig 77 (152)
++..+. ..+++++.++.|++|..++ ++.+ .|...+ .+|...+++| +.||+|||+- +.+|+...|+.
T Consensus 184 L~~~a~-~~Gv~i~~~t~V~~i~~~~-~~~v-~v~~~~~~~g~~~~i~A-~~VV~AAG~~-s~~La~~~Gi~ 250 (483)
T TIGR01320 184 LLGYLV-QNGTTIRFGHEVRNLKRQS-DGSW-TVTVKNTRTGGKRTLNT-RFVFVGAGGG-ALPLLQKSGIP 250 (483)
T ss_pred HHHHHH-hCCCEEEeCCEEEEEEEcC-CCeE-EEEEeeccCCceEEEEC-CEEEECCCcc-hHHHHHHcCCC
Confidence 334343 4589999999999997653 2222 233332 2344456888 7999999974 67777777775
No 76
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=91.99 E-value=0.67 Score=37.31 Aligned_cols=53 Identities=19% Similarity=0.264 Sum_probs=39.6
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcC----CC---cEEEEEeCcEEEEccCCccC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP----QG---KTIKVNANREVVLAANSINS 67 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~----~g---~~~~~~a~k~VIlaaGai~t 67 (152)
...+++++.++.|+.+..++ ++++.||.+.+. ++ ....++| |.||.|+|.-..
T Consensus 115 ~~~Gv~I~~~t~V~dl~~~~-~g~V~Gvv~~~~~v~~~g~~~~~~~i~A-k~VI~ATG~~a~ 174 (257)
T PRK04176 115 IDAGAKIFNGVSVEDVILRE-DPRVAGVVINWTPVEMAGLHVDPLTIEA-KAVVDATGHDAE 174 (257)
T ss_pred HHcCCEEEcCceeceeeEeC-CCcEEEEEEccccccccCCCCCcEEEEc-CEEEEEeCCCcH
Confidence 35689999999999998764 448999887531 12 3467888 799999996443
No 77
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=91.61 E-value=1.5 Score=38.83 Aligned_cols=68 Identities=22% Similarity=0.265 Sum_probs=44.0
Q ss_pred hhHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccChHHHhhCCCC
Q psy17300 6 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQQSGVG 77 (152)
Q Consensus 6 ~~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgig 77 (152)
++...+...+++++++++.|+.|..++++. . .|.+.+ .++....++| +.||+|||+ .+-+|+..+|+.
T Consensus 189 aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~-w-~v~v~~t~~g~~~~i~A-d~VV~AAGa-wS~~La~~~Gi~ 257 (497)
T PRK13339 189 KLAKHLESHPNAQVKYNHEVVDLERLSDGG-W-EVTVKDRNTGEKREQVA-DYVFIGAGG-GAIPLLQKSGIP 257 (497)
T ss_pred HHHHHHHhCCCcEEEeCCEEEEEEECCCCC-E-EEEEEecCCCceEEEEc-CEEEECCCc-chHHHHHHcCCC
Confidence 344444445689999999999987652222 2 234332 2343345788 699999997 456777777764
No 78
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=91.57 E-value=0.65 Score=37.48 Aligned_cols=46 Identities=33% Similarity=0.414 Sum_probs=35.1
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCcc
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSIN 66 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~ 66 (152)
...+.+++.++.|+.|..+ ++.+++|... +| .++| +.||+|+|+--
T Consensus 148 ~~~g~~~~~~~~v~~i~~~--~~~~~~v~~~--~g---~~~a-~~vV~a~G~~~ 193 (337)
T TIGR02352 148 EKLGVEIIEHTEVQHIEIR--GEKVTAIVTP--SG---DVQA-DQVVLAAGAWA 193 (337)
T ss_pred HHcCCEEEccceEEEEEee--CCEEEEEEcC--CC---EEEC-CEEEEcCChhh
Confidence 4568999999999999876 5677777642 33 4778 69999999744
No 79
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=90.99 E-value=0.78 Score=39.81 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=40.5
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcC-CCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~-~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
+.+.+|++++.|++|..+ ++++++|...+. ++....+.| +.||+++..-.+.+||
T Consensus 244 ~~G~~i~~~~~V~~I~~~--~~~~~gv~~~~~~~~~~~~~~a-d~VI~~~~~~~~~~ll 299 (492)
T TIGR02733 244 RDGGNLLTGQRVTAIHTK--GGRAGWVVVVDSRKQEDLNVKA-DDVVANLPPQSLLELL 299 (492)
T ss_pred hcCCEEeCCceEEEEEEe--CCeEEEEEEecCCCCceEEEEC-CEEEECCCHHHHHHhc
Confidence 457899999999999887 567888887642 232345778 6899988876666544
No 80
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=90.61 E-value=0.8 Score=38.46 Aligned_cols=63 Identities=32% Similarity=0.361 Sum_probs=40.4
Q ss_pred hhhHHhhhcCCCcEEEcCcEEEEEEEeCCCC-eEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHH
Q psy17300 5 SIFLRAIKDKNTVQVSKNSEVTKLCFDETKT-KVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 70 (152)
Q Consensus 5 ~~~l~~~~~~~nl~l~~~~~V~ri~~~~~~~-~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~l 70 (152)
..|+..+.++-.-.+..++.|++|..+.+++ ....|..++.+|....+.| |.|||+.| .+|.+
T Consensus 98 ~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~a-r~vVla~G--~~P~i 161 (341)
T PF13434_consen 98 NDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRA-RNVVLATG--GQPRI 161 (341)
T ss_dssp HHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEE-SEEEE------EE--
T ss_pred HHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEe-CeEEECcC--CCCCC
Confidence 3577776655555588899999999875322 4566666666787888999 79999999 55543
No 81
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=90.17 E-value=0.81 Score=39.88 Aligned_cols=53 Identities=26% Similarity=0.418 Sum_probs=40.9
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
.+.+.+|++++.|++|..+ ++++.+|.+. +|. .+.| +.||++++...+-+.|+
T Consensus 240 ~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~--~g~--~~~a-d~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 240 EKHGGQIRYRARVTKIILE--NGKAVGVKLA--DGE--KIYA-KRIVSNATRWDTFGKLL 292 (493)
T ss_pred HHCCCEEEeCCeeeEEEec--CCcEEEEEeC--CCC--EEEc-CEEEECCChHHHHHHhC
Confidence 4567999999999999887 5788888875 453 4567 68999999877765454
No 82
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=89.75 E-value=1.1 Score=38.45 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=35.8
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCc-EEEEEeCcEEEEccCC
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGK-TIKVNANREVVLAANS 64 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~-~~~~~a~k~VIlaaGa 64 (152)
..+.+|++++.|++|..++ ++++++|.+.+..+. .+.+.+ +.||+++..
T Consensus 225 ~~g~~i~l~~~V~~I~~~~-~~~v~~v~~~~~~~~~~~~~~a-~~VI~a~p~ 274 (453)
T TIGR02731 225 SRGGEVRLNSRLKEIVLNE-DGSVKHFVLADGEGQRRFEVTA-DAYVSAMPV 274 (453)
T ss_pred hcCCEEeCCCeeEEEEECC-CCCEEEEEEecCCCCceeEEEC-CEEEEcCCH
Confidence 3467999999999998654 567889998743332 235777 689998765
No 83
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=89.61 E-value=3.1 Score=32.81 Aligned_cols=60 Identities=22% Similarity=0.342 Sum_probs=44.2
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccChHHHhhC
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQQS 74 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~tP~lLl~S 74 (152)
+.++.++++++++.+.++.-+ .++.++.+.+ .++....+.+ +.+|+|.|...++.+|..+
T Consensus 186 l~~~~gv~~~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~i~~-D~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 186 LRKNPNIEFLWNSTVKEIVGD---NKVEGVKIKNTVTGEEEELKV-DGVFIAIGHEPNTELLKGL 246 (300)
T ss_pred HHhCCCeEEEeccEEEEEEcc---CcEEEEEEEecCCCceEEEEc-cEEEEeeCCCCChHHHHHh
Confidence 444459999999999998643 3667777764 3466677888 6999999987777777654
No 84
>PRK07208 hypothetical protein; Provisional
Probab=89.56 E-value=1.4 Score=37.87 Aligned_cols=55 Identities=20% Similarity=0.174 Sum_probs=37.7
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHH
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 70 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~l 70 (152)
..+.+|++++.|++|..+. ++.++.+.+.+.+|....+.| +.||+++-.-....+
T Consensus 230 ~~g~~i~~~~~V~~I~~~~-~~~v~~~~~~~~~g~~~~~~a-d~VI~a~p~~~l~~~ 284 (479)
T PRK07208 230 ALGGKVVLNAKVVGLHHDG-DGRIAVVVVNDTDGTEETVTA-DQVISSMPLRELVAA 284 (479)
T ss_pred HcCCEEEeCCEEEEEEEcC-CcEEEEEEEEcCCCCEEEEEc-CEEEECCCHHHHHHh
Confidence 3467999999999998874 345566666544566566888 688887654434433
No 85
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=89.55 E-value=0.73 Score=39.81 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=32.8
Q ss_pred hcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChH
Q psy17300 12 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR 69 (152)
Q Consensus 12 ~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~ 69 (152)
..+.++++.+++.|..|..+ ++.+..|... ++ ..+.+ +.||||+|...-|+
T Consensus 119 l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~~--~~--~~~~a-~~vILAtGG~S~p~ 169 (409)
T PF03486_consen 119 LKRLGVEIHFNTRVKSIEKK--EDGVFGVKTK--NG--GEYEA-DAVILATGGKSYPK 169 (409)
T ss_dssp HHHHT-EEE-S--EEEEEEE--TTEEEEEEET--TT--EEEEE-SEEEE----SSSGG
T ss_pred HHHcCCEEEeCCEeeeeeec--CCceeEeecc--Cc--ccccC-CEEEEecCCCCccc
Confidence 34678999999999999887 5667777772 22 35777 79999999999987
No 86
>PRK06126 hypothetical protein; Provisional
Probab=89.22 E-value=2.2 Score=37.50 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=38.8
Q ss_pred hcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccChH
Q psy17300 12 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVR 69 (152)
Q Consensus 12 ~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~tP~ 69 (152)
.+.++++++.++.|+++..+ ++.++ +.+.+ .+|...++++ +.||.|.|+-..-|
T Consensus 137 ~~~~~v~i~~~~~v~~i~~~--~~~v~-v~~~~~~~g~~~~i~a-d~vVgADG~~S~VR 191 (545)
T PRK06126 137 AAQPGVTLRYGHRLTDFEQD--ADGVT-ATVEDLDGGESLTIRA-DYLVGCDGARSAVR 191 (545)
T ss_pred HhCCCceEEeccEEEEEEEC--CCeEE-EEEEECCCCcEEEEEE-EEEEecCCcchHHH
Confidence 34578999999999999876 34454 55554 4566678888 68888888755444
No 87
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=89.16 E-value=1.1 Score=39.02 Aligned_cols=54 Identities=22% Similarity=0.289 Sum_probs=41.4
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhC
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQS 74 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~S 74 (152)
+.+.+|++++.|++|..+ ++++++|.+. +|. .+.| +.||++++...+...|+-.
T Consensus 231 ~~G~~i~~~~~V~~i~~~--~~~~~~V~~~--~g~--~~~a-d~VI~a~~~~~~~~~l~~~ 284 (502)
T TIGR02734 231 DLGGELRLNAEVIRIETE--GGRATAVHLA--DGE--RLDA-DAVVSNADLHHTYRRLLPN 284 (502)
T ss_pred HCCCEEEECCeEEEEEee--CCEEEEEEEC--CCC--EEEC-CEEEECCcHHHHHHHhcCc
Confidence 457899999999999877 5678888775 453 3567 6899998887777666533
No 88
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=89.06 E-value=1.6 Score=38.24 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=45.6
Q ss_pred hhhHHhhhcCCCcE--EEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCC
Q psy17300 5 SIFLRAIKDKNTVQ--VSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 76 (152)
Q Consensus 5 ~~~l~~~~~~~nl~--l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgi 76 (152)
..||....++-++. |..++.|++|..+ +++ .-|...+.++....... +.||+|.|....|++.-..|+
T Consensus 114 ~~YL~~~a~~fgl~~~I~~~t~V~~V~~~--~~~-w~V~~~~~~~~~~~~~~-d~VIvAtG~~~~P~~P~ipG~ 183 (461)
T PLN02172 114 LAYLQDFAREFKIEEMVRFETEVVRVEPV--DGK-WRVQSKNSGGFSKDEIF-DAVVVCNGHYTEPNVAHIPGI 183 (461)
T ss_pred HHHHHHHHHHcCCcceEEecCEEEEEeec--CCe-EEEEEEcCCCceEEEEc-CEEEEeccCCCCCcCCCCCCc
Confidence 35677655566666 8999999999765 332 33444432233334455 799999999999988766654
No 89
>PLN02985 squalene monooxygenase
Probab=89.05 E-value=2.3 Score=37.64 Aligned_cols=58 Identities=19% Similarity=0.270 Sum_probs=42.1
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
+.+.+|+++..+ .|+.+..+ ++.+.||.+.+.+|++.++.| +.||.|.|....-|=.+
T Consensus 157 a~~~~~V~i~~g-tvv~li~~--~~~v~gV~~~~~dG~~~~~~A-dLVVgADG~~S~vR~~l 214 (514)
T PLN02985 157 ASSLPNVRLEEG-TVKSLIEE--KGVIKGVTYKNSAGEETTALA-PLTVVCDGCYSNLRRSL 214 (514)
T ss_pred HHhCCCeEEEee-eEEEEEEc--CCEEEEEEEEcCCCCEEEEEC-CEEEECCCCchHHHHHh
Confidence 445678998855 57776655 567889998766777777888 68888888766655444
No 90
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=88.95 E-value=2.8 Score=36.94 Aligned_cols=61 Identities=18% Similarity=0.347 Sum_probs=48.1
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccChHHHhhC
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQQS 74 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~tP~lLl~S 74 (152)
+...+|+++++++.+.++.-+ ++++++|.+.+ .++.+.++.+ ..|+++.|..-++.+|..+
T Consensus 396 l~~~~gI~i~~~~~v~~i~~~--~g~v~~v~~~~~~~g~~~~i~~-D~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 396 LRSLPNVTIITNAQTTEVTGD--GDKVTGLTYKDRTTGEEHHLEL-EGVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred HhcCCCcEEEECcEEEEEEcC--CCcEEEEEEEECCCCcEEEEEc-CEEEEeECCccCchHHhhh
Confidence 334579999999999998644 57888999886 3466677888 5999999999888887644
No 91
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=88.72 E-value=2.2 Score=37.31 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=45.4
Q ss_pred hhHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCCCCh
Q psy17300 6 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDA 79 (152)
Q Consensus 6 ~~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgig~~ 79 (152)
.+...+. ..|.++..++.|++|..+++ + ++-+.. .+|.+. ++| |-||.||| ..+-+|++.+|+.+.
T Consensus 158 ~l~e~a~-~~g~~i~ln~eV~~i~~~~d-g-~~~~~~--~~g~~~-~~a-k~Vin~AG-l~Ad~la~~~g~~~~ 223 (429)
T COG0579 158 ALAEEAQ-ANGVELRLNTEVTGIEKQSD-G-VFVLNT--SNGEET-LEA-KFVINAAG-LYADPLAQMAGIPED 223 (429)
T ss_pred HHHHHHH-HcCCEEEecCeeeEEEEeCC-c-eEEEEe--cCCcEE-EEe-eEEEECCc-hhHHHHHHHhCCCcc
Confidence 3444344 45999999999999988753 2 222222 356655 888 68888777 467779999998763
No 92
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=87.99 E-value=2.6 Score=37.11 Aligned_cols=55 Identities=20% Similarity=0.221 Sum_probs=40.6
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
...+.+++.++.|+++..+ ++. .+|.+.+ .+|....++| +.||.|+|+- +.+++-
T Consensus 166 ~~~Ga~i~~~~~V~~i~~~--~~~-~~v~~~~~~~g~~~~i~a-~~VVnAaG~w-a~~l~~ 221 (508)
T PRK12266 166 AERGAEILTRTRVVSARRE--NGL-WHVTLEDTATGKRYTVRA-RALVNAAGPW-VKQFLD 221 (508)
T ss_pred HHcCCEEEcCcEEEEEEEe--CCE-EEEEEEEcCCCCEEEEEc-CEEEECCCcc-HHHHHh
Confidence 3568999999999998765 343 4677765 3466678998 7999999975 455543
No 93
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=87.82 E-value=2.4 Score=35.67 Aligned_cols=56 Identities=29% Similarity=0.389 Sum_probs=39.2
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 76 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgi 76 (152)
.+.+.+++.++.|+.|..++ ++.+.+|... +| .+.+ +.||+|||+- ++.++...|+
T Consensus 194 ~~~Gv~~~~~~~V~~i~~~~-~~~~~~v~t~--~g---~i~a-~~vVvaagg~-~~~l~~~~g~ 249 (407)
T TIGR01373 194 DRRGVDIIQNCEVTGFIRRD-GGRVIGVETT--RG---FIGA-KKVGVAVAGH-SSVVAAMAGF 249 (407)
T ss_pred HHCCCEEEeCCEEEEEEEcC-CCcEEEEEeC--Cc---eEEC-CEEEECCChh-hHHHHHHcCC
Confidence 45689999999999987543 4556666553 34 4777 6899999985 4556655554
No 94
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.46 E-value=2.9 Score=36.64 Aligned_cols=55 Identities=20% Similarity=0.234 Sum_probs=40.9
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
.+.+.+++.++.|+.+..+ ++ ..+|.+.+..|++..++| +.||.|+|+- +.+++.
T Consensus 166 ~~~Ga~i~~~~~V~~i~~~--~~-~~~v~~~~~~g~~~~i~a-~~VVnAaG~w-a~~l~~ 220 (502)
T PRK13369 166 AERGATILTRTRCVSARRE--GG-LWRVETRDADGETRTVRA-RALVNAAGPW-VTDVIH 220 (502)
T ss_pred HHCCCEEecCcEEEEEEEc--CC-EEEEEEEeCCCCEEEEEe-cEEEECCCcc-HHHHHh
Confidence 3567999999999998765 33 356777654467788998 7999999965 455544
No 95
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=87.38 E-value=0.77 Score=41.34 Aligned_cols=54 Identities=22% Similarity=0.292 Sum_probs=43.6
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCcc
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSIN 66 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~ 66 (152)
+....++++..+..+++++.++ +..+.||...+ .+|..+.+++ |.||+|+|+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~l~~~~-~~~v~Gvv~~~~~~g~~~~~~a-kavilaTGG~g 202 (562)
T COG1053 148 LLKFSGIEIFDEYFVLDLLVDD-GGGVAGVVARDLRTGELYVFRA-KAVILATGGAG 202 (562)
T ss_pred HHHhhcchhhhhhhhhhheecC-CCcEEEEEEEEecCCcEEEEec-CcEEEccCCce
Confidence 3344677899999999998885 34489998887 4577788888 89999999998
No 96
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=87.24 E-value=2.4 Score=35.53 Aligned_cols=51 Identities=27% Similarity=0.363 Sum_probs=36.4
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
.+.+.+++.++.|++|..+ ++.+++|... .+ ++++ +.||+|+|+- ++.++.
T Consensus 212 ~~~G~~i~~~~~V~~i~~~--~~~~~~v~t~--~~---~~~a-~~VV~a~G~~-~~~l~~ 262 (416)
T PRK00711 212 EQLGVKFRFNTPVDGLLVE--GGRITGVQTG--GG---VITA-DAYVVALGSY-STALLK 262 (416)
T ss_pred HHCCCEEEcCCEEEEEEec--CCEEEEEEeC--Cc---EEeC-CEEEECCCcc-hHHHHH
Confidence 4568999999999998766 4566666532 22 4777 7999999975 455554
No 97
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=86.38 E-value=3.3 Score=33.28 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=37.5
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcC----CC---cEEEEEeCcEEEEccCC
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP----QG---KTIKVNANREVVLAANS 64 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~----~g---~~~~~~a~k~VIlaaGa 64 (152)
+.+++++.++.|+.+..+++..++.||.+... +| ....++| +.||.|+|.
T Consensus 112 e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~A-k~VVdATG~ 168 (254)
T TIGR00292 112 QAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRS-RVVVDATGH 168 (254)
T ss_pred HcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEc-CEEEEeecC
Confidence 45699999999999988742237999987421 12 3567888 799999984
No 98
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=85.75 E-value=2.6 Score=38.48 Aligned_cols=51 Identities=22% Similarity=0.423 Sum_probs=38.4
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChH
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR 69 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~ 69 (152)
+.+.+|++++ ++.|..+..+ ++++.||... +| ..+.| +.||+|+|++-.-.
T Consensus 110 L~~~~nV~I~-q~~V~~Li~e--~grV~GV~t~--dG--~~I~A-k~VIlATGTFL~g~ 160 (618)
T PRK05192 110 LENQPNLDLF-QGEVEDLIVE--NGRVVGVVTQ--DG--LEFRA-KAVVLTTGTFLRGK 160 (618)
T ss_pred HHcCCCcEEE-EeEEEEEEec--CCEEEEEEEC--CC--CEEEC-CEEEEeeCcchhcC
Confidence 3456799985 6779998877 6789999875 45 35788 79999999865433
No 99
>KOG0042|consensus
Probab=85.62 E-value=0.34 Score=43.68 Aligned_cols=53 Identities=30% Similarity=0.381 Sum_probs=45.4
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccCh
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~tP 68 (152)
+.+.++.-+.+|.+++.++ ++++.|++++| ..|+++.++| |-||=|+|.+.-.
T Consensus 236 r~GA~v~Nh~ev~~Llkd~-~~kv~Ga~~rD~iTG~e~~I~A-k~VVNATGpfsDs 289 (680)
T KOG0042|consen 236 RNGATVLNHVEVVSLLKDK-DGKVIGARARDHITGKEYEIRA-KVVVNATGPFSDS 289 (680)
T ss_pred hcchhhhhHHHHHHHhhCC-CCceeeeEEEEeecCcEEEEEE-EEEEeCCCCccHH
Confidence 5678888899999998886 56899999998 5799999999 8999999988644
No 100
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=84.90 E-value=6.3 Score=34.72 Aligned_cols=58 Identities=17% Similarity=0.339 Sum_probs=45.0
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcC-CCcEEEEEeCcEEEEccCCccChHHHhh
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRILQQ 73 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~-~g~~~~~~a~k~VIlaaGai~tP~lLl~ 73 (152)
.+.++++++++.|+++.-+ ++++++|.+.+. ++....+.+ ..|++|.|..-+..+|..
T Consensus 399 ~~~gV~i~~~~~v~~i~~~--~~~v~~v~~~~~~~~~~~~i~~-D~vi~a~G~~Pn~~~l~~ 457 (515)
T TIGR03140 399 SLPNVDILTSAQTTEIVGD--GDKVTGIRYQDRNSGEEKQLDL-DGVFVQIGLVPNTEWLKD 457 (515)
T ss_pred cCCCCEEEECCeeEEEEcC--CCEEEEEEEEECCCCcEEEEEc-CEEEEEeCCcCCchHHhh
Confidence 3468999999999998643 567888988753 455667888 599999999888877753
No 101
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=84.88 E-value=2.6 Score=36.10 Aligned_cols=55 Identities=16% Similarity=0.096 Sum_probs=37.9
Q ss_pred hHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHH
Q psy17300 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 70 (152)
Q Consensus 7 ~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~l 70 (152)
.|....++.+++|++++.|+.| + ++. ..|.+. .+. ..++| +.||||+|....|++
T Consensus 91 ~L~~~l~~~gV~i~~~~~V~~i--~--~~~-~~v~~~--~~~-~~~~a-~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 91 AWLKRLAEQGVQFHTRHRWIGW--Q--GGT-LRFETP--DGQ-STIEA-DAVVLALGGASWSQL 145 (376)
T ss_pred HHHHHHHHCCCEEEeCCEEEEE--e--CCc-EEEEEC--CCc-eEEec-CEEEEcCCCcccccc
Confidence 3334456789999999999998 4 222 344442 222 24778 799999999988854
No 102
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.87 E-value=4.7 Score=34.99 Aligned_cols=61 Identities=21% Similarity=0.358 Sum_probs=48.7
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcC-CCcEEEEEeCcEEEEccCCccChHHHhhC
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRILQQS 74 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~-~g~~~~~~a~k~VIlaaGai~tP~lLl~S 74 (152)
++.-+|++|++|++-+.|.=| +.+++|+.|+|. +|.++.+.= ..|.+--|-+-+..+|.-+
T Consensus 399 l~sl~Nv~ii~na~Ttei~Gd--g~kV~Gl~Y~dr~sge~~~l~L-eGvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 399 LRSLPNVTIITNAQTTEVKGD--GDKVTGLEYRDRVSGEEHHLEL-EGVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred HhcCCCcEEEecceeeEEecC--CceecceEEEeccCCceeEEEe-eeeEEEEecccChhHhhch
Confidence 567899999999999998655 789999999984 577777765 4677777888888888644
No 103
>KOG4254|consensus
Probab=84.86 E-value=1 Score=39.97 Aligned_cols=59 Identities=19% Similarity=0.279 Sum_probs=44.2
Q ss_pred hHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 7 ~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
-+.+..++.+-.|.+++.|.+|+.| +++|.||... +|++ +++ |.||--|+-..|=-=|+
T Consensus 269 aia~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~--dG~e--v~s-k~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 269 AIAEGAKRAGAEIFTKATVQSILLD--SGKAVGVRLA--DGTE--VRS-KIVVSNATPWDTFEKLL 327 (561)
T ss_pred HHHHHHHhccceeeehhhhhheecc--CCeEEEEEec--CCcE--EEe-eeeecCCchHHHHHHhC
Confidence 3445556788999999999999999 6999999997 6754 445 67777677666653444
No 104
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=84.29 E-value=3.6 Score=37.63 Aligned_cols=55 Identities=18% Similarity=0.392 Sum_probs=41.1
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
+.+.+|++++.+ .|+.+..+. ++++.+|... +|. .+.| +.||+|+|++...+++.
T Consensus 106 Le~~pgV~Ile~-~Vv~li~e~-~g~V~GV~t~--~G~--~I~A-d~VILATGtfL~g~ihi 160 (617)
T TIGR00136 106 LENQPNLSLFQG-EVEDLILED-NDEIKGVVTQ--DGL--KFRA-KAVIITTGTFLRGKIHI 160 (617)
T ss_pred HHcCCCcEEEEe-EEEEEEEec-CCcEEEEEEC--CCC--EEEC-CEEEEccCcccCCCEEe
Confidence 445678999755 677776653 5688899885 453 5788 79999999998776665
No 105
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=84.11 E-value=6.9 Score=32.81 Aligned_cols=55 Identities=25% Similarity=0.248 Sum_probs=39.0
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCCC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVG 77 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgig 77 (152)
.+.+.+++.++.|.++..+ ++.+ .|.. .++ .+++ +.||+|+|+ .++.++...|+.
T Consensus 160 ~~~Gv~i~~~~~V~~i~~~--~~~~-~V~~--~~g---~i~a-d~vV~A~G~-~s~~l~~~~g~~ 214 (393)
T PRK11728 160 QARGGEIRLGAEVTALDEH--ANGV-VVRT--TQG---EYEA-RTLINCAGL-MSDRLAKMAGLE 214 (393)
T ss_pred HhCCCEEEcCCEEEEEEec--CCeE-EEEE--CCC---EEEe-CEEEECCCc-chHHHHHHhCCC
Confidence 4568999999999998765 3332 3333 233 4777 699999997 578888777764
No 106
>PRK08401 L-aspartate oxidase; Provisional
Probab=84.04 E-value=4.6 Score=35.10 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=35.5
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccCh
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP 68 (152)
.+.+++++.+ .|+.++.+ ++++.||.. ++. .+++ +.||||+|+....
T Consensus 131 ~~~gv~i~~~-~v~~l~~~--~g~v~Gv~~---~g~--~i~a-~~VVLATGG~~~~ 177 (466)
T PRK08401 131 RELGVNFIRG-FAEELAIK--NGKAYGVFL---DGE--LLKF-DATVIATGGFSGL 177 (466)
T ss_pred HhcCCEEEEe-EeEEEEee--CCEEEEEEE---CCE--EEEe-CeEEECCCcCcCC
Confidence 4568898876 78888765 578888876 232 4777 6999999998764
No 107
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=83.60 E-value=7.9 Score=33.22 Aligned_cols=61 Identities=25% Similarity=0.381 Sum_probs=40.9
Q ss_pred hHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCCC
Q psy17300 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVG 77 (152)
Q Consensus 7 ~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgig 77 (152)
+|.....+.+++++.++.|+++..+ ++++.++. .++. .+.| +.||.|.|+ +..+....|+.
T Consensus 113 ~L~~~a~~~Gv~i~~~~~V~~i~~~--~g~v~~v~---~~g~--~i~A-~~VI~A~G~--~s~l~~~lgl~ 173 (428)
T PRK10157 113 WLMEQAEEAGAQLITGIRVDNLVQR--DGKVVGVE---ADGD--VIEA-KTVILADGV--NSILAEKLGMA 173 (428)
T ss_pred HHHHHHHHCCCEEECCCEEEEEEEe--CCEEEEEE---cCCc--EEEC-CEEEEEeCC--CHHHHHHcCCC
Confidence 3444344678999999999999876 45555543 2343 4677 799999987 34555555554
No 108
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=83.48 E-value=6.4 Score=32.43 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=36.5
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCCC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVG 77 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgig 77 (152)
.+.+.+++.++.|++|..+ ++.+ .|.. .++ .+.+ +.||+|+|+.. +.++..-|+.
T Consensus 156 ~~~g~~~~~~~~V~~i~~~--~~~~-~v~~--~~~---~i~a-~~vV~aaG~~~-~~l~~~~g~~ 210 (380)
T TIGR01377 156 EAHGATVRDGTKVVEIEPT--ELLV-TVKT--TKG---SYQA-NKLVVTAGAWT-SKLLSPLGIE 210 (380)
T ss_pred HHcCCEEECCCeEEEEEec--CCeE-EEEe--CCC---EEEe-CEEEEecCcch-HHHhhhcccC
Confidence 4568999999999998765 3433 2433 233 4777 68999999854 4555544543
No 109
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=83.06 E-value=4.4 Score=35.35 Aligned_cols=56 Identities=20% Similarity=0.341 Sum_probs=40.1
Q ss_pred CCCcEEEcCcEEEEEEEeCC--CC-eEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 14 KNTVQVSKNSEVTKLCFDET--KT-KVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~--~~-~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
+.+.+|++++.|++|..+.. +. ++++|.+.+.++ ...+.+ +.||+|+.+-...+||
T Consensus 231 ~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~-~~~~~a-D~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 231 ARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEG-KKVIKA-DAYVAACDVPGIKRLL 289 (474)
T ss_pred HCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCc-ceEEEC-CEEEECCChHHHHhhC
Confidence 46789999999999998631 22 488888853222 134677 5899998887777766
No 110
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=83.06 E-value=6.4 Score=32.98 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=36.8
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChH
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR 69 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~ 69 (152)
+...++++++.++.|+++..++ +.+ .|.+.+ ++...++++ +.||.|-|.-..-|
T Consensus 131 ~~~~~~v~i~~~~~v~~v~~~~--~~~-~v~~~~-~~~~~~i~a-dlvIgADG~~S~vR 184 (415)
T PRK07364 131 LQSCPNITWLCPAEVVSVEYQQ--DAA-TVTLEI-EGKQQTLQS-KLVVAADGARSPIR 184 (415)
T ss_pred HhcCCCcEEEcCCeeEEEEecC--Cee-EEEEcc-CCcceEEee-eEEEEeCCCCchhH
Confidence 3344789999999999987663 332 355552 344457888 68888888755544
No 111
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=82.77 E-value=8.4 Score=33.95 Aligned_cols=56 Identities=30% Similarity=0.257 Sum_probs=40.6
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
+.++++|+.++.|+.|..++ ..+ .|.+.+.+|++.++++ +.||-|-|+-.+.|=++
T Consensus 125 ~~~gv~v~~g~~v~~i~~~~--~~v-~v~~~~~~G~~~~i~a-d~vVgADG~~S~vR~~l 180 (538)
T PRK06183 125 RFPHVRVRFGHEVTALTQDD--DGV-TVTLTDADGQRETVRA-RYVVGCDGANSFVRRTL 180 (538)
T ss_pred hCCCcEEEcCCEEEEEEEcC--CeE-EEEEEcCCCCEEEEEE-EEEEecCCCchhHHHHc
Confidence 34689999999999998763 333 3556544676778998 68888888766665544
No 112
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=82.47 E-value=6.7 Score=32.95 Aligned_cols=56 Identities=20% Similarity=0.108 Sum_probs=36.0
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCC-cEEEEEeCcEEEEccCCccChHHHhh
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQG-KTIKVNANREVVLAANSINSVRILQQ 73 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g-~~~~~~a~k~VIlaaGai~tP~lLl~ 73 (152)
.+.+++++.++.|++|..+ ++.+ .+.+.+..+ ....+++ +.||+|+|+- ++.++..
T Consensus 208 ~~~G~~i~~~~~V~~i~~~--~~~~-~v~~~~~~~~~~~~i~a-~~vV~a~G~~-s~~l~~~ 264 (410)
T PRK12409 208 ARLGVQFRYGQEVTSIKTD--GGGV-VLTVQPSAEHPSRTLEF-DGVVVCAGVG-SRALAAM 264 (410)
T ss_pred HhCCCEEEcCCEEEEEEEe--CCEE-EEEEEcCCCCccceEec-CEEEECCCcC-hHHHHHH
Confidence 4568999999999999765 3443 244442211 1235777 7999999964 4455543
No 113
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=82.01 E-value=4.5 Score=35.10 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=38.0
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChH
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR 69 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~ 69 (152)
++.+++|++++.|..|..+ + .+..+...+|. ++++ +.+|||.|...-|+
T Consensus 122 ~~~gV~i~~~~~v~~v~~~--~---~~f~l~t~~g~--~i~~-d~lilAtGG~S~P~ 170 (408)
T COG2081 122 EALGVTIRTRSRVSSVEKD--D---SGFRLDTSSGE--TVKC-DSLILATGGKSWPK 170 (408)
T ss_pred HHcCcEEEecceEEeEEec--C---ceEEEEcCCCC--EEEc-cEEEEecCCcCCCC
Confidence 4789999999999999876 2 34444434554 6888 69999999999994
No 114
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=80.96 E-value=7.5 Score=33.75 Aligned_cols=56 Identities=9% Similarity=0.227 Sum_probs=39.7
Q ss_pred hcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 12 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 12 ~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
..+.++++++++.|++|.-+ +..+ .|.+.+.+|.+..+.+ ..+++|.|..-+...|
T Consensus 234 l~~~gi~i~~~~~v~~i~~~--~~~v-~v~~~~~~g~~~~i~~-D~vl~a~G~~p~~~~l 289 (475)
T PRK06327 234 FTKQGLDIHLGVKIGEIKTG--GKGV-SVAYTDADGEAQTLEV-DKLIVSIGRVPNTDGL 289 (475)
T ss_pred HHHcCcEEEeCcEEEEEEEc--CCEE-EEEEEeCCCceeEEEc-CEEEEccCCccCCCCC
Confidence 34578999999999999755 2332 3555544455567888 5999999988776644
No 115
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=80.30 E-value=11 Score=32.56 Aligned_cols=57 Identities=21% Similarity=0.184 Sum_probs=39.0
Q ss_pred hhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHH
Q psy17300 10 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 70 (152)
Q Consensus 10 ~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~l 70 (152)
....+.++++++++.|+++.-+ +..+ .+.+.+.+|....+.+ ..||+|.|..-+..+
T Consensus 221 ~~l~~~gV~i~~~~~v~~i~~~--~~~~-~v~~~~~~g~~~~i~~-D~vi~a~G~~pn~~~ 277 (466)
T PRK07818 221 KQYKKLGVKILTGTKVESIDDN--GSKV-TVTVSKKDGKAQELEA-DKVLQAIGFAPRVEG 277 (466)
T ss_pred HHHHHCCCEEEECCEEEEEEEe--CCeE-EEEEEecCCCeEEEEe-CEEEECcCcccCCCC
Confidence 3334678999999999998644 3332 3444423565566888 699999998766655
No 116
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=79.60 E-value=8.8 Score=32.01 Aligned_cols=49 Identities=22% Similarity=0.171 Sum_probs=32.9
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
.+ +.+++.++.|+.|..+ +++ ..|.. .+|. .++| +.||+|+|+-. +.++
T Consensus 146 ~~-G~~i~~~~~V~~i~~~--~~~-~~v~t--~~g~--~~~a-~~vV~a~G~~~-~~l~ 194 (381)
T TIGR03197 146 GI-RLTLHFNTEITSLERD--GEG-WQLLD--ANGE--VIAA-SVVVLANGAQA-GQLA 194 (381)
T ss_pred CC-CcEEEeCCEEEEEEEc--CCe-EEEEe--CCCC--EEEc-CEEEEcCCccc-cccc
Confidence 45 8999999999999765 343 23332 3443 3677 79999999653 4443
No 117
>PRK10262 thioredoxin reductase; Provisional
Probab=79.23 E-value=15 Score=29.85 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=43.9
Q ss_pred hcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcC--CCcEEEEEeCcEEEEccCCccChHHHhhCCC
Q psy17300 12 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP--QGKTIKVNANREVVLAANSINSVRILQQSGV 76 (152)
Q Consensus 12 ~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~--~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgi 76 (152)
....++++++++.+.+|.-+ +..+.+|.+.+. .+...++.+ ..||++.|..-+..++. +++
T Consensus 195 l~~~gV~i~~~~~v~~v~~~--~~~~~~v~~~~~~~~~~~~~i~~-D~vv~a~G~~p~~~l~~-~~l 257 (321)
T PRK10262 195 VENGNIILHTNRTLEEVTGD--QMGVTGVRLRDTQNSDNIESLDV-AGLFVAIGHSPNTAIFE-GQL 257 (321)
T ss_pred ccCCCeEEEeCCEEEEEEcC--CccEEEEEEEEcCCCCeEEEEEC-CEEEEEeCCccChhHhh-ccc
Confidence 34678999999999998533 446778888742 234456887 69999999888777553 344
No 118
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=79.06 E-value=4.6 Score=35.43 Aligned_cols=53 Identities=23% Similarity=0.337 Sum_probs=36.3
Q ss_pred hcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 12 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 12 ~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
..+.+.+|.+++.|++|..+ +++ ++.+++.+| ..+.+ +.||..+.. ..+..|.
T Consensus 234 ~~~~Gg~I~~~~~V~~I~v~--~g~--g~~~~~~~g--~~~~a-d~vv~~~~~-~~~~~l~ 286 (487)
T COG1233 234 AREHGGEIRTGAEVSQILVE--GGK--GVGVRTSDG--ENIEA-DAVVSNADP-ALLARLL 286 (487)
T ss_pred HHHcCCEEECCCceEEEEEe--CCc--ceEEecccc--ceecc-ceeEecCch-hhhhhhh
Confidence 34678999999999999998 555 555554455 55666 577776666 4444444
No 119
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=78.90 E-value=8.7 Score=31.58 Aligned_cols=49 Identities=20% Similarity=0.263 Sum_probs=33.8
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
.+.++++..++.|++|..+ ++. +.+...+| .+++ +.||+|+|+. ++.++
T Consensus 160 ~~~gv~i~~~~~v~~i~~~--~~~---~~v~~~~g---~~~a-~~vV~A~G~~-~~~l~ 208 (376)
T PRK11259 160 REAGAELLFNEPVTAIEAD--GDG---VTVTTADG---TYEA-KKLVVSAGAW-VKDLL 208 (376)
T ss_pred HHCCCEEECCCEEEEEEee--CCe---EEEEeCCC---EEEe-eEEEEecCcc-hhhhc
Confidence 3568999999999999875 332 33332344 4677 7999999975 44444
No 120
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=77.68 E-value=2.2 Score=38.65 Aligned_cols=54 Identities=22% Similarity=0.391 Sum_probs=41.0
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
+.+.+|++|+... |+.|+.++ +.++.||... +|. .+.| +.|||.+|++-.-+|.
T Consensus 110 le~~~NL~l~q~~-v~dli~e~-~~~v~GV~t~--~G~--~~~a-~aVVlTTGTFL~G~I~ 163 (621)
T COG0445 110 LENQPNLHLLQGE-VEDLIVEE-GQRVVGVVTA--DGP--EFHA-KAVVLTTGTFLRGKIH 163 (621)
T ss_pred HhcCCCceehHhh-hHHHhhcC-CCeEEEEEeC--CCC--eeec-CEEEEeecccccceEE
Confidence 5578999998776 77777763 4479999886 453 4667 7999999998777665
No 121
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=77.59 E-value=11 Score=29.97 Aligned_cols=51 Identities=24% Similarity=0.178 Sum_probs=32.9
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccCh
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP 68 (152)
+.++++..++.|+.+..+ ...++.+.....+|...+++| +.||-|-| +.|.
T Consensus 123 ~~gv~i~~~~~v~~~~~d--~~~~~~~~~~~~~g~~~~i~a-dlvVgADG-~~S~ 173 (356)
T PF01494_consen 123 ERGVDIRFGTRVVSIEQD--DDGVTVVVRDGEDGEEETIEA-DLVVGADG-AHSK 173 (356)
T ss_dssp HHTEEEEESEEEEEEEEE--TTEEEEEEEETCTCEEEEEEE-SEEEE-SG-TT-H
T ss_pred hhhhhheeeeeccccccc--ccccccccccccCCceeEEEE-eeeecccC-cccc
Confidence 344999999999999877 445544444334677778998 45555555 4543
No 122
>PRK10015 oxidoreductase; Provisional
Probab=76.75 E-value=10 Score=32.63 Aligned_cols=50 Identities=26% Similarity=0.267 Sum_probs=35.6
Q ss_pred hHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCC
Q psy17300 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANS 64 (152)
Q Consensus 7 ~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGa 64 (152)
+|.......+++++.++.|+.+..+ ++++.+|.. ++ ..++| +.||+|.|+
T Consensus 113 ~L~~~a~~~Gv~i~~~~~V~~i~~~--~~~v~~v~~---~~--~~i~A-~~VI~AdG~ 162 (429)
T PRK10015 113 WLMEQAEQAGAQFIPGVRVDALVRE--GNKVTGVQA---GD--DILEA-NVVILADGV 162 (429)
T ss_pred HHHHHHHHcCCEEECCcEEEEEEEe--CCEEEEEEe---CC--eEEEC-CEEEEccCc
Confidence 3433334568999999999998766 456666653 22 35788 799999997
No 123
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=76.60 E-value=16 Score=31.30 Aligned_cols=52 Identities=21% Similarity=0.260 Sum_probs=36.7
Q ss_pred hcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChH
Q psy17300 12 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR 69 (152)
Q Consensus 12 ~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~ 69 (152)
..+.++++++++.|++|..+ ++.+. +.. .+|....+.+ ..+|+|.|..-+..
T Consensus 221 l~~~gi~i~~~~~v~~i~~~--~~~v~-v~~--~~g~~~~i~~-D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 221 LKKKGVKILTNTKVTAVEKN--DDQVV-YEN--KGGETETLTG-EKVLVAVGRKPNTE 272 (461)
T ss_pred HHHcCCEEEeCCEEEEEEEe--CCEEE-EEE--eCCcEEEEEe-CEEEEecCCcccCC
Confidence 34568999999999998765 33333 333 3454456777 69999999887766
No 124
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=75.95 E-value=12 Score=31.48 Aligned_cols=51 Identities=20% Similarity=0.291 Sum_probs=31.6
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCC
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANS 64 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGa 64 (152)
+..+..++|+.++.|+.+..+++ + -.-+.+++ ..+....+.+ ..||+|+|-
T Consensus 288 v~g~~~~~l~~~~~v~~~~~~~~-~-~~~l~~~~~~~~~~~~~~~-D~VilATGy 339 (341)
T PF13434_consen 288 VSGRGRLRLLPNTEVTSAEQDGD-G-GVRLTLRHRQTGEEETLEV-DAVILATGY 339 (341)
T ss_dssp HHT---SEEETTEEEEEEEEES--S-SEEEEEEETTT--EEEEEE-SEEEE---E
T ss_pred hcCCCCeEEeCCCEEEEEEECCC-C-EEEEEEEECCCCCeEEEec-CEEEEcCCc
Confidence 44566799999999999988842 2 34566665 4566777888 699999983
No 125
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=75.26 E-value=12 Score=31.33 Aligned_cols=52 Identities=27% Similarity=0.251 Sum_probs=36.7
Q ss_pred HhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccCh
Q psy17300 9 RAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 9 ~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP 68 (152)
..+.+.+|++++.++.|+.+..+ +..++ |.+.. +|. +++| +.+|-|=| ++|.
T Consensus 112 ~~~~~~~~v~~~~~~~v~~~~~~--~~~v~-v~l~~-dG~--~~~a-~llVgADG-~~S~ 163 (387)
T COG0654 112 EAARALPNVTLRFGAEVEAVEQD--GDGVT-VTLSF-DGE--TLDA-DLLVGADG-ANSA 163 (387)
T ss_pred HHHhhCCCcEEEcCceEEEEEEc--CCceE-EEEcC-CCc--EEec-CEEEECCC-CchH
Confidence 33556788999999999999887 45666 76663 665 7887 46666555 4444
No 126
>KOG1298|consensus
Probab=74.94 E-value=4.3 Score=35.53 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=43.3
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHH
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 70 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~l 70 (152)
+...||+++..++ |..++-+ .+.+.||.|.+..|++.++.| ..-|+|-|-+.+=|-
T Consensus 157 a~slpNV~~eeGt-V~sLlee--~gvvkGV~yk~k~gee~~~~A-pLTvVCDGcfSnlRr 212 (509)
T KOG1298|consen 157 AASLPNVRLEEGT-VKSLLEE--EGVVKGVTYKNKEGEEVEAFA-PLTVVCDGCFSNLRR 212 (509)
T ss_pred HhcCCCeEEeeee-HHHHHhc--cCeEEeEEEecCCCceEEEec-ceEEEecchhHHHHH
Confidence 4567888876655 7776655 569999999988888888999 688999987766443
No 127
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=74.41 E-value=20 Score=30.92 Aligned_cols=62 Identities=19% Similarity=0.281 Sum_probs=42.9
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-------CCC---------cEEEEEeCcEEEEccCCccChHHHhhCCC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-------PQG---------KTIKVNANREVVLAANSINSVRILQQSGV 76 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-------~~g---------~~~~~~a~k~VIlaaGai~tP~lLl~Sgi 76 (152)
...++++++++.+.++.-++ ++++++|.+.. .+| .+..+.+ ..||+|.|..-...+|...|+
T Consensus 320 ~~~GV~~~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-D~Vi~AiG~~p~~~~l~~~gl 397 (449)
T TIGR01316 320 EEEGVKFHFLCQPVEIIGDE-EGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEA-DAVIVAIGNGSNPIMAETTRL 397 (449)
T ss_pred HhCCCEEEeccCcEEEEEcC-CCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEEC-CEEEECCCCCCCchhhhccCc
Confidence 45789999999999986543 57888888751 122 3456888 599999997655544444443
No 128
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=73.80 E-value=9.3 Score=24.58 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=25.6
Q ss_pred hhHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEE
Q psy17300 6 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFR 43 (152)
Q Consensus 6 ~~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~ 43 (152)
.++.....+.|+++++++.+.+|.-+. ++ ++ |.+.
T Consensus 44 ~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~-~~-V~~~ 78 (80)
T PF00070_consen 44 KILEEYLRKRGVEVHTNTKVKEIEKDG-DG-VE-VTLE 78 (80)
T ss_dssp HHHHHHHHHTTEEEEESEEEEEEEEET-TS-EE-EEEE
T ss_pred HHHHHHHHHCCCEEEeCCEEEEEEEeC-CE-EE-EEEe
Confidence 344444456699999999999998774 33 66 7776
No 129
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=73.59 E-value=19 Score=31.33 Aligned_cols=61 Identities=23% Similarity=0.293 Sum_probs=44.4
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc--C----CC--------cEEEEEeCcEEEEccCCccChHHHhhC
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN--P----QG--------KTIKVNANREVVLAANSINSVRILQQS 74 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~--~----~g--------~~~~~~a~k~VIlaaGai~tP~lLl~S 74 (152)
+..++.+++...++|.++... +++++||.-.- + .| ..+++.| ..||++.|.|+--+=|.+-
T Consensus 162 ~~~~~~v~f~~RHrV~~l~~t--~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A-~aviv~SGGIGGnhelVRr 236 (552)
T COG3573 162 AQRRGRVTFRFRHRVDGLTTT--GGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSA-SAVIVASGGIGGNHELVRR 236 (552)
T ss_pred HHhCCceEEEeeeeccceEee--CCeEeeecccccCCCccccCCCccceeecceEEee-eeEEEecCCcCCCHHHHHh
Confidence 345788999999999999887 88999986321 1 12 1357888 6899999998765555443
No 130
>PLN02487 zeta-carotene desaturase
Probab=73.30 E-value=9.7 Score=34.40 Aligned_cols=57 Identities=18% Similarity=0.185 Sum_probs=40.2
Q ss_pred cCCCcEEEcCcEEEEEEEeCC-CC--eEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 13 DKNTVQVSKNSEVTKLCFDET-KT--KVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~-~~--~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
.+.+.+|.+++.|.+|..+.+ ++ +++||.+. ..+....+.+ +.||++++.-...+||
T Consensus 306 ~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~-~~~~~~~~~a-D~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 306 TDRGGRFHLRWGCREILYDKSPDGETYVTGLKVS-KATEKEIVKA-DAYVAACDVPGIKRLL 365 (569)
T ss_pred HHcCCEEEeCCceEEEEEecCCCCceeEEEEEEe-cCCCceEEEC-CEEEECCCHHHHHHhC
Confidence 456789999999999999742 22 58999985 2333345777 6899988866555544
No 131
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=73.21 E-value=20 Score=34.37 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=46.9
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCCC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVG 77 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgig 77 (152)
.+.++++++++.|.++.- ++++.+|.+...++....+.+ ..|+++.|..-+..|+...|..
T Consensus 362 ~~~GV~i~~~~~v~~i~g---~~~v~~V~l~~~~g~~~~i~~-D~V~va~G~~Pnt~L~~~lg~~ 422 (985)
T TIGR01372 362 RELGIEVLTGHVVAATEG---GKRVSGVAVARNGGAGQRLEA-DALAVSGGWTPVVHLFSQRGGK 422 (985)
T ss_pred HHcCCEEEcCCeEEEEec---CCcEEEEEEEecCCceEEEEC-CEEEEcCCcCchhHHHHhcCCC
Confidence 466899999999999852 346778888743455567888 6999999999999888777643
No 132
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=73.09 E-value=22 Score=29.62 Aligned_cols=62 Identities=15% Similarity=0.205 Sum_probs=43.3
Q ss_pred HHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCCC
Q psy17300 8 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVG 77 (152)
Q Consensus 8 l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgig 77 (152)
+.......++++++++.|.++..+ +.. ..|.+. +|. .+.+ +.||+|.|..-++.++..+|+.
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~~~--~~~-~~v~~~--~g~--~i~~-D~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 189 LQHRLTEMGVHLLLKSQLQGLEKT--DSG-IRATLD--SGR--SIEV-DAVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred HHHHHHhCCCEEEECCeEEEEEcc--CCE-EEEEEc--CCc--EEEC-CEEEECcCCCcchHHHHHCCCC
Confidence 333344678999999999998654 222 234443 453 4667 6999999998888888877764
No 133
>PRK08244 hypothetical protein; Provisional
Probab=72.06 E-value=18 Score=31.37 Aligned_cols=59 Identities=25% Similarity=0.218 Sum_probs=38.6
Q ss_pred HHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 8 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 8 l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
|.......+++++.++.|+++..+ +..+ .|.+.+.+| ..++++ +.||.|.|+-.+.+=+
T Consensus 106 L~~~~~~~gv~v~~~~~v~~i~~~--~~~v-~v~~~~~~g-~~~i~a-~~vVgADG~~S~vR~~ 164 (493)
T PRK08244 106 LEEHARSLGVEIFRGAEVLAVRQD--GDGV-EVVVRGPDG-LRTLTS-SYVVGADGAGSIVRKQ 164 (493)
T ss_pred HHHHHHHcCCeEEeCCEEEEEEEc--CCeE-EEEEEeCCc-cEEEEe-CEEEECCCCChHHHHh
Confidence 333334457999999999998766 3333 345553345 456888 6999999885554433
No 134
>PRK12831 putative oxidoreductase; Provisional
Probab=72.01 E-value=18 Score=31.49 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=41.5
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-------C---------CCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-------P---------QGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-------~---------~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
..++++++++.+.++.-++ ++++++|++.. . .|.+..+.+ ..||+|.|..-...++.
T Consensus 330 ~eGV~i~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~-D~Vi~AiG~~p~~~~~~ 402 (464)
T PRK12831 330 EEGVIFDLLTNPVEILGDE-NGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEV-DTVIMSLGTSPNPLISS 402 (464)
T ss_pred HcCCEEEecccceEEEecC-CCeEEEEEEEEEEecCcCCCCCccceecCCceEEEEC-CEEEECCCCCCChhhhc
Confidence 5789999999999987654 57899988751 1 234456888 59999999776655443
No 135
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=71.47 E-value=14 Score=31.14 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=35.0
Q ss_pred hHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCC
Q psy17300 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANS 64 (152)
Q Consensus 7 ~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGa 64 (152)
||.......+.++++.+.|+.+..++ ++.+.++... + .+++| +.||.|-|+
T Consensus 100 ~La~~A~~aGae~~~~~~~~~~~~~~-~~~~~~~~~~---~--~e~~a-~~vI~AdG~ 150 (396)
T COG0644 100 WLAERAEEAGAELYPGTRVTGVIRED-DGVVVGVRAG---D--DEVRA-KVVIDADGV 150 (396)
T ss_pred HHHHHHHHcCCEEEeceEEEEEEEeC-CcEEEEEEcC---C--EEEEc-CEEEECCCc
Confidence 55554556889999999999999884 3444333322 1 67888 677777764
No 136
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=70.81 E-value=16 Score=31.76 Aligned_cols=60 Identities=27% Similarity=0.291 Sum_probs=42.8
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc----------CCCcEEEEEeCcEEEEccCCccC-hHHHhhCCC
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN----------PQGKTIKVNANREVVLAANSINS-VRILQQSGV 76 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~----------~~g~~~~~~a~k~VIlaaGai~t-P~lLl~Sgi 76 (152)
..++++++++.+++|.-+ ++++++|++.. ..+.+..+.+ ..||+|.|..-+ ..++...|+
T Consensus 341 ~~GV~i~~~~~~~~i~~~--~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~-D~VI~A~G~~p~~~~l~~~~gl 411 (471)
T PRK12810 341 EEGVEREFNVQTKEFEGE--NGKVTGVKVVRTELGEGDFEPVEGSEFVLPA-DLVLLAMGFTGPEAGLLAQFGV 411 (471)
T ss_pred HcCCeEEeccCceEEEcc--CCEEEEEEEEEEEecCCCccccCCceEEEEC-CEEEECcCcCCCchhhccccCc
Confidence 568999999999998643 67899888652 1245567888 599999996654 345554443
No 137
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=70.60 E-value=22 Score=27.65 Aligned_cols=53 Identities=19% Similarity=0.132 Sum_probs=34.9
Q ss_pred hHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCcc
Q psy17300 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSIN 66 (152)
Q Consensus 7 ~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~ 66 (152)
+|.....+.+++++.++.|.++..++ +.+ .+.+. + ....+++ +.||.|.|.-.
T Consensus 96 ~l~~~~~~~gv~~~~~~~v~~~~~~~--~~~-~~~~~--~-~~~~~~a-~~vv~a~G~~s 148 (295)
T TIGR02032 96 QLAERAQEAGAELRLGTTVLDVEIHD--DRV-VVIVR--G-GEGTVTA-KIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHcCCEEEeCcEEeeEEEeC--CEE-EEEEc--C-ccEEEEe-CEEEECCCcch
Confidence 33333345689999999999998774 332 23332 2 2245778 79999999764
No 138
>PRK07233 hypothetical protein; Provisional
Probab=69.72 E-value=8.5 Score=32.17 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=35.0
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
..+.+|.+++.|++|..+ +++++.+.. ++. .+.+ +.||+|+..-..+.+|
T Consensus 210 ~~g~~v~~~~~V~~i~~~--~~~~~~~~~---~~~--~~~a-d~vI~a~p~~~~~~ll 259 (434)
T PRK07233 210 ARGGEIRLGTPVTSVVID--GGGVTGVEV---DGE--EEDF-DAVISTAPPPILARLV 259 (434)
T ss_pred hcCceEEeCCCeeEEEEc--CCceEEEEe---CCc--eEEC-CEEEECCCHHHHHhhc
Confidence 456799999999999876 455555542 333 4667 6899998876555554
No 139
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=69.27 E-value=16 Score=29.96 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=29.5
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHH
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 70 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~l 70 (152)
++.+++++.++.|+.|. + + .|.. .+|. ++| +.||+|+|+- ++.|
T Consensus 157 ~~~Gv~i~~~t~V~~i~-~--~----~v~t--~~g~---i~a-~~VV~A~G~~-s~~l 200 (365)
T TIGR03364 157 EQHGVEFHWNTAVTSVE-T--G----TVRT--SRGD---VHA-DQVFVCPGAD-FETL 200 (365)
T ss_pred hcCCCEEEeCCeEEEEe-c--C----eEEe--CCCc---EEe-CEEEECCCCC-hhhh
Confidence 34589999999999984 1 2 3333 2342 567 6999999984 3444
No 140
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=69.24 E-value=26 Score=29.74 Aligned_cols=61 Identities=23% Similarity=0.258 Sum_probs=41.6
Q ss_pred HHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCCC
Q psy17300 8 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVG 77 (152)
Q Consensus 8 l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgig 77 (152)
+.......++++++++.|.+|.- ++.+..+.. ++. .+.+ +.+|+|.|..-+..+|..+|+.
T Consensus 197 l~~~l~~~gI~v~~~~~v~~i~~---~~~~~~v~~---~~~--~i~~-d~vi~a~G~~p~~~~l~~~gl~ 257 (444)
T PRK09564 197 MEEELRENGVELHLNEFVKSLIG---EDKVEGVVT---DKG--EYEA-DVVIVATGVKPNTEFLEDTGLK 257 (444)
T ss_pred HHHHHHHCCCEEEcCCEEEEEec---CCcEEEEEe---CCC--EEEc-CEEEECcCCCcCHHHHHhcCcc
Confidence 33334466799999999999842 234444433 232 3677 6999999988777788877763
No 141
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=68.80 E-value=7.3 Score=33.48 Aligned_cols=52 Identities=25% Similarity=0.135 Sum_probs=42.3
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHH
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 70 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~l 70 (152)
+.+--++++-.|.+..+. +++++.|..+ ++....++| +.+|||.|.+.|--|
T Consensus 270 ~~Gg~~m~Gd~V~~a~~~--~~~v~~i~tr--n~~diP~~a-~~~VLAsGsffskGL 321 (421)
T COG3075 270 QLGGLWMPGDEVKKATCK--GGRVTEIYTR--NHADIPLRA-DFYVLASGSFFSKGL 321 (421)
T ss_pred HcCceEecCCceeeeeee--CCeEEEEEec--ccccCCCCh-hHeeeeccccccccc
Confidence 455678888899998888 8899999987 666677888 699999999877643
No 142
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=68.73 E-value=27 Score=30.14 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=39.2
Q ss_pred HHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 8 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 8 l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
+.....+.++++++++.|+++..+. ++.+..+.. .+|....+.+ ..||+|.|..-+...|
T Consensus 227 l~~~l~~~gI~i~~~~~v~~i~~~~-~~~~~~~~~--~~g~~~~i~~-D~vi~a~G~~p~~~~l 286 (472)
T PRK05976 227 VARLLKKLGVRVVTGAKVLGLTLKK-DGGVLIVAE--HNGEEKTLEA-DKVLVSVGRRPNTEGI 286 (472)
T ss_pred HHHHHHhcCCEEEeCcEEEEEEEec-CCCEEEEEE--eCCceEEEEe-CEEEEeeCCccCCCCC
Confidence 3333446789999999999997521 223333332 3565567888 5899999987665443
No 143
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=68.71 E-value=12 Score=33.35 Aligned_cols=66 Identities=18% Similarity=0.156 Sum_probs=40.1
Q ss_pred hhhHHhhhcCCCc--EEEcCcEEEEEEEeCCCC--eEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 5 SIFLRAIKDKNTV--QVSKNSEVTKLCFDETKT--KVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 5 ~~~l~~~~~~~nl--~l~~~~~V~ri~~~~~~~--~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
..||....++-+| +|..++.|++|...++.. .-..|... .+|+..+-.- +.||+|.|....|.+=.
T Consensus 87 ~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~-~~g~~~~~~f-D~VvvatG~~~~P~~P~ 156 (531)
T PF00743_consen 87 LEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTE-NDGKEETEEF-DAVVVATGHFSKPNIPE 156 (531)
T ss_dssp HHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEET-TTTEEEEEEE-CEEEEEE-SSSCESB--
T ss_pred HHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEee-cCCeEEEEEe-CeEEEcCCCcCCCCCCh
Confidence 4577765554444 789999999998764211 12234332 3454433333 58999999999998754
No 144
>PLN02612 phytoene desaturase
Probab=68.65 E-value=12 Score=33.56 Aligned_cols=44 Identities=20% Similarity=0.201 Sum_probs=32.7
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccC
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAAN 63 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaG 63 (152)
+.+.+|++++.|++|..++ ++++++|.+. +|+ .+.+ +.||++..
T Consensus 320 ~~G~~I~l~~~V~~I~~~~-~g~v~~v~~~--~G~--~~~a-d~VI~a~p 363 (567)
T PLN02612 320 SLGGEVRLNSRIKKIELND-DGTVKHFLLT--NGS--VVEG-DVYVSATP 363 (567)
T ss_pred hcCCEEEeCCeeeEEEECC-CCcEEEEEEC--CCc--EEEC-CEEEECCC
Confidence 3577999999999998865 4567777774 453 4667 68888764
No 145
>PRK07045 putative monooxygenase; Reviewed
Probab=68.47 E-value=26 Score=29.13 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=34.7
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHH
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 70 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~l 70 (152)
+...++++++.++.|+.+..++ ++.++.|.+. +|+ ++.+ +.||-|-|+-...|=
T Consensus 116 ~~~~~gv~i~~~~~v~~i~~~~-~~~~~~v~~~--~g~--~~~~-~~vIgADG~~S~vR~ 169 (388)
T PRK07045 116 LDGLPNVRLRFETSIERIERDA-DGTVTSVTLS--DGE--RVAP-TVLVGADGARSMIRD 169 (388)
T ss_pred HhcCCCeeEEeCCEEEEEEECC-CCcEEEEEeC--CCC--EEEC-CEEEECCCCChHHHH
Confidence 3346789999999999998764 3445566664 453 4666 455555554443443
No 146
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=68.18 E-value=34 Score=30.63 Aligned_cols=54 Identities=26% Similarity=0.390 Sum_probs=41.3
Q ss_pred cCCCcEEEcCcEEEEEEEeCC--CCeEEEEEEEcCCCcE--EEEEeCcEEEEccCCccC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDET--KTKVTGVEFRNPQGKT--IKVNANREVVLAANSINS 67 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~--~~~~~gV~~~~~~g~~--~~~~a~k~VIlaaGai~t 67 (152)
...++++..++.|+-|.++.+ ..+|+.+.+. .+|++ ..+..+..|++.-|.+-+
T Consensus 218 ~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~-~~g~~~~i~l~~~DlV~vT~GS~t~ 275 (500)
T PF06100_consen 218 KSQGVDFRFNTKVTDIDFDITGDKKTATRIHIE-QDGKEETIDLGPDDLVFVTNGSMTE 275 (500)
T ss_pred HHCCCEEECCCEEEEEEEEccCCCeeEEEEEEE-cCCCeeEEEeCCCCEEEEECCcccc
Confidence 467899999999999999753 4578888887 55554 456677888888777654
No 147
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=68.12 E-value=14 Score=32.04 Aligned_cols=59 Identities=27% Similarity=0.234 Sum_probs=40.8
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCC
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 76 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgi 76 (152)
....+|..++.|+.+.+++ ++...-|.+. ++...++.+ +.||+|+|.++.|.+=-.-|+
T Consensus 96 ~~~~~i~~~~~v~~~~~~~-~~~~w~V~~~--~~~~~~~~a-~~vV~ATG~~~~P~iP~~~G~ 154 (443)
T COG2072 96 GLRFQIRFNTRVEVADWDE-DTKRWTVTTS--DGGTGELTA-DFVVVATGHLSEPYIPDFAGL 154 (443)
T ss_pred CceeEEEcccceEEEEecC-CCCeEEEEEc--CCCeeeEec-CEEEEeecCCCCCCCCCCCCc
Confidence 3456777777787788886 3445556665 333333677 799999999999977666554
No 148
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=67.50 E-value=27 Score=28.57 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=32.7
Q ss_pred HHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCcc
Q psy17300 8 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSIN 66 (152)
Q Consensus 8 l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~ 66 (152)
+..+.+.++++++.++.|+++..+ ++.+ .|.+ .+|. .+.+ +.||.|.|.-.
T Consensus 113 ~~~~~~~~~~~v~~~~~v~~i~~~--~~~~-~v~~--~~g~--~~~~-~~vi~adG~~S 163 (385)
T TIGR01988 113 WERLQEYPNVTLLCPARVVELPRH--SDHV-ELTL--DDGQ--QLRA-RLLVGADGANS 163 (385)
T ss_pred HHHHHhCCCcEEecCCeEEEEEec--CCee-EEEE--CCCC--EEEe-eEEEEeCCCCC
Confidence 333555566999999999999766 3333 2443 3554 3666 57777777543
No 149
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=66.80 E-value=24 Score=29.86 Aligned_cols=57 Identities=16% Similarity=0.189 Sum_probs=34.8
Q ss_pred HHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCC-----CcEEEEEeCcEEEEccCCcc
Q psy17300 8 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ-----GKTIKVNANREVVLAANSIN 66 (152)
Q Consensus 8 l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~-----g~~~~~~a~k~VIlaaGai~ 66 (152)
|.....+.+++++..+ +..+....+.....+|.+...+ |+...++| +.||.|.|+-.
T Consensus 99 L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a-~~VIgADG~~S 160 (398)
T TIGR02028 99 LRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEV-DAVIGADGANS 160 (398)
T ss_pred HHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEe-CEEEECCCcch
Confidence 4333345688997775 7666543223445567665322 55567888 68888888644
No 150
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=66.09 E-value=37 Score=29.09 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=38.0
Q ss_pred hhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 10 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 10 ~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
....+.++++++++.|++|.-+ ++.+ .+.+. ..+.+..+.+ ..||+|.|..-+..+|
T Consensus 221 ~~l~~~gV~i~~~~~V~~i~~~--~~~v-~v~~~-~gg~~~~i~~-D~vi~a~G~~p~~~~l 277 (462)
T PRK06416 221 RALKKRGIKIKTGAKAKKVEQT--DDGV-TVTLE-DGGKEETLEA-DYVLVAVGRRPNTENL 277 (462)
T ss_pred HHHHHcCCEEEeCCEEEEEEEe--CCEE-EEEEE-eCCeeEEEEe-CEEEEeeCCccCCCCC
Confidence 3334568999999999999755 2322 24443 2244456778 6999999987666554
No 151
>PRK06370 mercuric reductase; Validated
Probab=66.05 E-value=35 Score=29.38 Aligned_cols=57 Identities=16% Similarity=0.304 Sum_probs=37.1
Q ss_pred HHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChH
Q psy17300 8 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR 69 (152)
Q Consensus 8 l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~ 69 (152)
+.......++++++++.|.+|.-+ ++. ..|.+.. .+....+.+ ..||+|.|..-+..
T Consensus 218 l~~~l~~~GV~i~~~~~V~~i~~~--~~~-~~v~~~~-~~~~~~i~~-D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 218 VREILEREGIDVRLNAECIRVERD--GDG-IAVGLDC-NGGAPEITG-SHILVAVGRVPNTD 274 (463)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEc--CCE-EEEEEEe-CCCceEEEe-CEEEECcCCCcCCC
Confidence 334445678999999999998754 222 2344432 222345777 68999999776665
No 152
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=65.83 E-value=21 Score=31.09 Aligned_cols=61 Identities=23% Similarity=0.273 Sum_probs=42.2
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-------CC---------CcEEEEEeCcEEEEccCCccC-hHHHhhCCC
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-------PQ---------GKTIKVNANREVVLAANSINS-VRILQQSGV 76 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-------~~---------g~~~~~~a~k~VIlaaGai~t-P~lLl~Sgi 76 (152)
..++++++++.+.+|..++ ++++++|++.. .+ |.+..+.+ ..||++.|..-+ +.++..+|+
T Consensus 332 ~~GV~~~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~-D~Vi~a~G~~p~~~~~~~~~gl 409 (467)
T TIGR01318 332 EEGVEFLFNVQPVYIECDE-DGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPA-DVVIMAFGFQPHAMPWLAGHGI 409 (467)
T ss_pred hcCCEEEecCCcEEEEECC-CCeEEEEEEEEEEecccCCCCCccceecCCceEEEEC-CEEEECCcCCCCccccccccCc
Confidence 5689999999999987653 56788887631 12 34567888 599999997754 334444443
No 153
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=65.15 E-value=16 Score=31.71 Aligned_cols=59 Identities=29% Similarity=0.333 Sum_probs=41.9
Q ss_pred hhHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCC
Q psy17300 6 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSG 75 (152)
Q Consensus 6 ~~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sg 75 (152)
.|......+.++++++++.|++|.-+ +|.+. +|.+ ++.+ ..+|.+||.=.+|-+=.++|
T Consensus 213 ~~a~~~L~~~GV~v~l~~~Vt~v~~~-------~v~~~--~g~~-~I~~-~tvvWaaGv~a~~~~~~l~~ 271 (405)
T COG1252 213 KYAERALEKLGVEVLLGTPVTEVTPD-------GVTLK--DGEE-EIPA-DTVVWAAGVRASPLLKDLSG 271 (405)
T ss_pred HHHHHHHHHCCCEEEcCCceEEECCC-------cEEEc--cCCe-eEec-CEEEEcCCCcCChhhhhcCh
Confidence 34555556789999999999998543 55554 3333 6877 69999999888885554444
No 154
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=64.97 E-value=35 Score=29.35 Aligned_cols=57 Identities=12% Similarity=0.166 Sum_probs=37.3
Q ss_pred HHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChH
Q psy17300 8 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR 69 (152)
Q Consensus 8 l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~ 69 (152)
+.......++++++++.|+++.-+ +. ...+.+.+ ++...++.+ +.||+|.|..-+..
T Consensus 213 l~~~l~~~gV~i~~~~~V~~i~~~--~~-~~~v~~~~-~~~~~~i~~-D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 213 VEEALAEEGIEVVTSAQVKAVSVR--GG-GKIITVEK-PGGQGEVEA-DELLVATGRRPNTD 269 (463)
T ss_pred HHHHHHHcCCEEEcCcEEEEEEEc--CC-EEEEEEEe-CCCceEEEe-CEEEEeECCCcCCC
Confidence 334344678999999999998654 22 23344442 233356777 69999999765555
No 155
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=64.57 E-value=36 Score=28.00 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=29.9
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCc
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSI 65 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai 65 (152)
.++++++.++.|+.|..++ +.+ .|.+ .+|. .+++ +.||.|.|.=
T Consensus 118 ~~gv~~~~~~~v~~i~~~~--~~~-~v~~--~~g~--~~~a-d~vV~AdG~~ 161 (382)
T TIGR01984 118 LTNIQLYCPARYKEIIRNQ--DYV-RVTL--DNGQ--QLRA-KLLIAADGAN 161 (382)
T ss_pred CCCcEEEcCCeEEEEEEcC--CeE-EEEE--CCCC--EEEe-eEEEEecCCC
Confidence 3689999999999987663 322 2333 3453 4677 6888888844
No 156
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=64.54 E-value=32 Score=31.31 Aligned_cols=61 Identities=23% Similarity=0.294 Sum_probs=42.1
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-------CC---------CcEEEEEeCcEEEEccCCccCh-HHHhhCCC
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-------PQ---------GKTIKVNANREVVLAANSINSV-RILQQSGV 76 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-------~~---------g~~~~~~a~k~VIlaaGai~tP-~lLl~Sgi 76 (152)
..++++++++.+.+|..++ ++++++|++.. .+ |.+..+.+ ..||+|.|..-.. .+|..+|+
T Consensus 518 ~~Gv~~~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~-D~Vi~AiG~~p~~~~~~~~~gl 595 (654)
T PRK12769 518 EEGANFEFNVQPVALELNE-QGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPA-DAVIMAFGFNPHGMPWLESHGV 595 (654)
T ss_pred HcCCeEEeccCcEEEEECC-CCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEEC-CEEEECccCCCCccccccccCC
Confidence 5679999999999987654 57899998742 12 34567888 6999999976543 34433443
No 157
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=63.91 E-value=35 Score=29.64 Aligned_cols=51 Identities=12% Similarity=0.140 Sum_probs=35.4
Q ss_pred cEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 17 VQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 17 l~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
+++++++.|+++..+ ++. ..+.+.+.++...++.+ ..||+|.|..-+..+|
T Consensus 229 v~i~~~~~v~~i~~~--~~~-~~v~~~~~~~~~~~i~~-D~vi~a~G~~pn~~~l 279 (471)
T PRK06467 229 FNIMLETKVTAVEAK--EDG-IYVTMEGKKAPAEPQRY-DAVLVAVGRVPNGKLL 279 (471)
T ss_pred eEEEcCCEEEEEEEc--CCE-EEEEEEeCCCcceEEEe-CEEEEeecccccCCcc
Confidence 999999999998755 233 23555433343456888 6999999988776654
No 158
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.61 E-value=34 Score=30.00 Aligned_cols=56 Identities=21% Similarity=0.222 Sum_probs=42.4
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCc-cChHHHh
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSI-NSVRILQ 72 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai-~tP~lLl 72 (152)
.+++.++.++.|.++.-.. +++ ..+.++. ..++..+++. ..||+|.|-= ..|.+|-
T Consensus 290 ~~~v~l~~~~ev~~~~~~G-~g~-~~l~~~~~~~~~~~t~~~-D~vIlATGY~~~~P~fL~ 347 (436)
T COG3486 290 KPDVRLLSLSEVQSVEPAG-DGR-YRLTLRHHETGELETVET-DAVILATGYRRAVPSFLE 347 (436)
T ss_pred CCCeeeccccceeeeecCC-Cce-EEEEEeeccCCCceEEEe-eEEEEecccccCCchhhh
Confidence 7889999999999987663 244 5666664 3577778887 6999999988 6676653
No 159
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=60.98 E-value=52 Score=29.00 Aligned_cols=56 Identities=16% Similarity=0.244 Sum_probs=36.7
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
+...+++++..++.|+.+..++ ..+ .+.+.+.++ ..++++ +.||.|.|+-..-|=+
T Consensus 135 ~~~~~~v~v~~~~~v~~i~~~~--~~v-~v~~~~~~g-~~~i~a-d~vVgADG~~S~vR~~ 190 (547)
T PRK08132 135 AQALPNIDLRWKNKVTGLEQHD--DGV-TLTVETPDG-PYTLEA-DWVIACDGARSPLREM 190 (547)
T ss_pred HHhCCCcEEEeCCEEEEEEEcC--CEE-EEEEECCCC-cEEEEe-CEEEECCCCCcHHHHH
Confidence 3345689999999999988763 322 244443334 346788 6888888876554433
No 160
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=60.23 E-value=46 Score=28.01 Aligned_cols=62 Identities=11% Similarity=0.223 Sum_probs=41.5
Q ss_pred hHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCCC
Q psy17300 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVG 77 (152)
Q Consensus 7 ~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgig 77 (152)
++.......++++++++.|+++.- ++. ..|.+ .+|. .+.+ +.||++.|..-+..++..+|+.
T Consensus 191 ~l~~~l~~~GV~i~~~~~V~~i~~---~~~-~~v~l--~~g~--~i~a-D~Vv~a~G~~pn~~l~~~~gl~ 252 (396)
T PRK09754 191 YLLQRHQQAGVRILLNNAIEHVVD---GEK-VELTL--QSGE--TLQA-DVVIYGIGISANDQLAREANLD 252 (396)
T ss_pred HHHHHHHHCCCEEEeCCeeEEEEc---CCE-EEEEE--CCCC--EEEC-CEEEECCCCChhhHHHHhcCCC
Confidence 343333467899999999999853 222 22433 3454 4667 6999999998887777777663
No 161
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=60.09 E-value=44 Score=27.59 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=34.3
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCC
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 76 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgi 76 (152)
+...++++++.++.|+.+..+ ++.+. |.+ .++. .+.+ +.||.|.|.- | .+....++
T Consensus 122 ~~~~~g~~~~~~~~v~~i~~~--~~~~~-v~~--~~g~--~~~a-~~vI~AdG~~-S-~vr~~~~~ 177 (395)
T PRK05732 122 LDKAPGVTLHCPARVANVERT--QGSVR-VTL--DDGE--TLTG-RLLVAADGSH-S-ALREALGI 177 (395)
T ss_pred HhcCCCcEEEcCCEEEEEEEc--CCeEE-EEE--CCCC--EEEe-CEEEEecCCC-h-hhHHhhCC
Confidence 344578999999999998655 33322 333 3443 4667 6888888764 3 24443344
No 162
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=60.08 E-value=44 Score=31.72 Aligned_cols=64 Identities=14% Similarity=0.220 Sum_probs=45.2
Q ss_pred hHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCC
Q psy17300 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 76 (152)
Q Consensus 7 ~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgi 76 (152)
.+.......++++++++.+.+|.-+. ......|.+. +|. .+.+ ..||+|.|..-+..|+..+|+
T Consensus 192 ~l~~~L~~~GV~v~~~~~v~~I~~~~-~~~~~~v~~~--dG~--~i~~-D~Vv~A~G~rPn~~L~~~~Gl 255 (847)
T PRK14989 192 QLRRKIESMGVRVHTSKNTLEIVQEG-VEARKTMRFA--DGS--ELEV-DFIVFSTGIRPQDKLATQCGL 255 (847)
T ss_pred HHHHHHHHCCCEEEcCCeEEEEEecC-CCceEEEEEC--CCC--EEEc-CEEEECCCcccCchHHhhcCc
Confidence 34444456789999999999986442 2345556654 454 4667 699999999888887777775
No 163
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=59.86 E-value=27 Score=28.24 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=29.2
Q ss_pred CcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccCh
Q psy17300 16 TVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 16 nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP 68 (152)
+.+|++++.|++|..+ +++++ |.+ .+|. .+.| +.||+++..=...
T Consensus 223 g~~i~l~~~V~~I~~~--~~~v~-v~~--~~g~--~~~a-d~VI~a~p~~~l~ 267 (450)
T PF01593_consen 223 GGEIRLNTPVTRIERE--DGGVT-VTT--EDGE--TIEA-DAVISAVPPSVLK 267 (450)
T ss_dssp GGGEESSEEEEEEEEE--SSEEE-EEE--TTSS--EEEE-SEEEE-S-HHHHH
T ss_pred CceeecCCcceecccc--ccccc-ccc--ccce--EEec-ceeeecCchhhhh
Confidence 4489999999999988 44443 333 4565 5677 5888887543333
No 164
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=59.85 E-value=35 Score=28.97 Aligned_cols=49 Identities=27% Similarity=0.319 Sum_probs=34.3
Q ss_pred hcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChH
Q psy17300 12 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR 69 (152)
Q Consensus 12 ~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~ 69 (152)
..+.++++++++.|++|..+ ++ ...|.. ++. .+.+ +.||+|+|....|.
T Consensus 115 l~~~gv~i~~~~~V~~i~~~--~~-~~~v~~---~~~--~i~a-d~VIlAtG~~s~p~ 163 (400)
T TIGR00275 115 LKELGVEILTNSKVKSIKKD--DN-GFGVET---SGG--EYEA-DKVILATGGLSYPQ 163 (400)
T ss_pred HHHCCCEEEeCCEEEEEEec--CC-eEEEEE---CCc--EEEc-CEEEECCCCcccCC
Confidence 34568999999999998654 33 233443 232 4667 79999999987764
No 165
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=59.75 E-value=33 Score=29.96 Aligned_cols=47 Identities=23% Similarity=0.283 Sum_probs=34.0
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCc
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSI 65 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai 65 (152)
+..+-++++++.|++|.+++ ++++.+|... +|+ .++| +.||.....+
T Consensus 243 a~~Gg~~~L~~~V~~I~~~~-~g~~~~V~~~--~Ge--~i~a-~~VV~~~s~~ 289 (443)
T PTZ00363 243 AIYGGTYMLNTPVDEVVFDE-NGKVCGVKSE--GGE--VAKC-KLVICDPSYF 289 (443)
T ss_pred HHcCcEEEcCCeEEEEEEcC-CCeEEEEEEC--CCc--EEEC-CEEEECcccc
Confidence 34577999999999999874 5678888775 453 4667 5777765544
No 166
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=59.64 E-value=48 Score=28.67 Aligned_cols=60 Identities=17% Similarity=0.130 Sum_probs=38.7
Q ss_pred HHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 8 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 8 l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
+.....+.++++++++.|+++.-+ ++. ..+.+.+ .+|....+.+ ..|++|.|..-+...|
T Consensus 221 l~~~l~~~gV~i~~~~~V~~i~~~--~~~-v~v~~~~~~~g~~~~i~~-D~vi~a~G~~pn~~~l 281 (466)
T PRK06115 221 LQKALTKQGMKFKLGSKVTGATAG--ADG-VSLTLEPAAGGAAETLQA-DYVLVAIGRRPYTQGL 281 (466)
T ss_pred HHHHHHhcCCEEEECcEEEEEEEc--CCe-EEEEEEEcCCCceeEEEe-CEEEEccCCccccccC
Confidence 333344678999999999998644 222 2333432 2344566888 6999999987665544
No 167
>PRK08163 salicylate hydroxylase; Provisional
Probab=58.85 E-value=40 Score=27.94 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=34.2
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
+.+.+++++..++.|+.+..+ ++. |.+...+|. ++.+ +.||.|.|.-...|-.
T Consensus 119 ~~~~~~v~~~~~~~v~~i~~~--~~~---v~v~~~~g~--~~~a-d~vV~AdG~~S~~r~~ 171 (396)
T PRK08163 119 VLDHPLVEFRTSTHVVGIEQD--GDG---VTVFDQQGN--RWTG-DALIGCDGVKSVVRQS 171 (396)
T ss_pred HHhcCCcEEEeCCEEEEEecC--CCc---eEEEEcCCC--EEec-CEEEECCCcChHHHhh
Confidence 444567999999999999765 332 333323453 4677 6888888876555433
No 168
>PRK11445 putative oxidoreductase; Provisional
Probab=58.53 E-value=65 Score=26.58 Aligned_cols=54 Identities=28% Similarity=0.250 Sum_probs=37.6
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
..+++++.++.|..+..++ +. ..|.+. .+|...++++ +.||.|.|+-...+-.+
T Consensus 110 ~~gv~v~~~~~v~~i~~~~--~~-~~v~~~-~~g~~~~i~a-~~vV~AdG~~S~vr~~l 163 (351)
T PRK11445 110 PASVEVYHNSLCRKIWRED--DG-YHVIFR-ADGWEQHITA-RYLVGADGANSMVRRHL 163 (351)
T ss_pred hcCCEEEcCCEEEEEEEcC--CE-EEEEEe-cCCcEEEEEe-CEEEECCCCCcHHhHHh
Confidence 4679999999999987653 32 235554 3565567888 69999999766555443
No 169
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=58.30 E-value=38 Score=29.16 Aligned_cols=57 Identities=25% Similarity=0.275 Sum_probs=39.8
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcC---------------CCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP---------------QGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~---------------~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
...++++++++.+.+|.-+ ++.+++|.+.+. ++....+.+ ..||+|.|..-...++.
T Consensus 322 ~~~GV~i~~~~~v~~i~~~--~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~-D~vi~a~G~~p~~~l~~ 393 (457)
T PRK11749 322 KEEGVEFEWLAAPVEILGD--EGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPA-DLVIKAIGQTPNPLILS 393 (457)
T ss_pred HHCCCEEEecCCcEEEEec--CCceEEEEEEEEEecCcCCCCCcccCCCCceEEEEC-CEEEECccCCCCchhhc
Confidence 3578999999999998644 344567766421 234567888 69999999877655543
No 170
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=57.60 E-value=43 Score=28.68 Aligned_cols=56 Identities=25% Similarity=0.225 Sum_probs=37.5
Q ss_pred HHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 8 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 8 l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
+.....+.++++++++.|+++..+ ++.+ .+.+ .+|. .+.+ +.||+|.|..-+..+|
T Consensus 222 l~~~l~~~gI~v~~~~~v~~i~~~--~~~~-~v~~--~~g~--~i~~-D~vi~a~G~~p~~~~l 277 (461)
T PRK05249 222 LSYHLRDSGVTIRHNEEVEKVEGG--DDGV-IVHL--KSGK--KIKA-DCLLYANGRTGNTDGL 277 (461)
T ss_pred HHHHHHHcCCEEEECCEEEEEEEe--CCeE-EEEE--CCCC--EEEe-CEEEEeecCCccccCC
Confidence 333344678999999999998755 2322 2333 3454 4667 6999999988777764
No 171
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=57.28 E-value=34 Score=31.09 Aligned_cols=48 Identities=25% Similarity=0.295 Sum_probs=31.8
Q ss_pred CcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 16 TVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 16 nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
++++..++.|++|..+ ++.++ |.. .++ ..+++ +.||+|+|+- ++.++.
T Consensus 421 Gv~i~~~~~V~~i~~~--~~~~~-v~t--~~g--~~~~a-d~VV~A~G~~-s~~l~~ 468 (662)
T PRK01747 421 QLTIHFGHEVARLERE--DDGWQ-LDF--AGG--TLASA-PVVVLANGHD-AARFAQ 468 (662)
T ss_pred CcEEEeCCEeeEEEEe--CCEEE-EEE--CCC--cEEEC-CEEEECCCCC-cccccc
Confidence 7999999999998766 34433 332 233 23456 6999999974 445543
No 172
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=56.91 E-value=50 Score=27.47 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=35.0
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCCC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVG 77 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgig 77 (152)
...++++..++.|+++..+ ++.++ |.+ .+|. .+++ +.||.|.|.-. .+-...|+.
T Consensus 124 ~~~gv~i~~~~~v~~i~~~--~~~v~-v~~--~~g~--~~~a-~~vV~AdG~~S--~vr~~~g~~ 178 (392)
T PRK08773 124 HAAGVQLHCPARVVALEQD--ADRVR-LRL--DDGR--RLEA-ALAIAADGAAS--TLRELAGLP 178 (392)
T ss_pred HhCCCEEEcCCeEEEEEec--CCeEE-EEE--CCCC--EEEe-CEEEEecCCCc--hHHHhhcCC
Confidence 3468999999999998765 33332 443 3453 4677 68888888744 343334543
No 173
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=56.81 E-value=32 Score=29.68 Aligned_cols=45 Identities=31% Similarity=0.314 Sum_probs=30.8
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~t 67 (152)
.+.+++|+.++.|+.|.. +.. ..|.. .+| .++| +.||+|+|+...
T Consensus 194 ~~~Gv~i~~~t~V~~i~~---~~~-~~v~t--~~g---~v~A-~~VV~Atga~s~ 238 (460)
T TIGR03329 194 LELGVEIHENTPMTGLEE---GQP-AVVRT--PDG---QVTA-DKVVLALNAWMA 238 (460)
T ss_pred HHcCCEEECCCeEEEEee---CCc-eEEEe--CCc---EEEC-CEEEEccccccc
Confidence 456899999999999863 222 23332 344 4778 699999998643
No 174
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=56.75 E-value=42 Score=28.78 Aligned_cols=48 Identities=15% Similarity=0.258 Sum_probs=33.4
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCC-CcEEEEEeCcEEEEccCCcc
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ-GKTIKVNANREVVLAANSIN 66 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~-g~~~~~~a~k~VIlaaGai~ 66 (152)
++.+++++.++.|++|..+ +. .|.+.+.. +....+.. +.+|+|+|+--
T Consensus 69 ~~~~i~v~~~~~V~~Id~~--~~---~v~~~~~~~~~~~~~~y-d~lviAtGs~~ 117 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDE--RQ---TVTVLNRKTNEQFEESY-DKLILSPGASA 117 (438)
T ss_pred HhCCCEEEeCCEEEEEECC--CC---EEEEEECCCCcEEeeec-CEEEECCCCCC
Confidence 4568999999999999765 32 35555322 34445666 69999999864
No 175
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=56.34 E-value=46 Score=28.68 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=36.1
Q ss_pred hhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHH
Q psy17300 10 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 70 (152)
Q Consensus 10 ~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~l 70 (152)
....+.++++++++.|+++..+ +. .+.+. .+++...+.+ ..||+|.|..-+...
T Consensus 219 ~~L~~~GI~i~~~~~V~~i~~~--~~---~v~~~-~~g~~~~i~~-D~vivA~G~~p~~~~ 272 (458)
T PRK06912 219 EKLENDGVKIFTGAALKGLNSY--KK---QALFE-YEGSIQEVNA-EFVLVSVGRKPRVQQ 272 (458)
T ss_pred HHHHHCCCEEEECCEEEEEEEc--CC---EEEEE-ECCceEEEEe-CEEEEecCCccCCCC
Confidence 3334568999999999998644 22 23343 2455456777 699999997655443
No 176
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=55.91 E-value=79 Score=26.20 Aligned_cols=63 Identities=24% Similarity=0.390 Sum_probs=47.4
Q ss_pred HhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCC
Q psy17300 9 RAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 76 (152)
Q Consensus 9 ~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgi 76 (152)
..+.+++++.+++++.+.+|.=+ + +.+|.+.+..+.+..+.. ..|.++.|..-.-.++...++
T Consensus 186 ~~l~~~~~i~~~~~~~i~ei~G~--~--v~~v~l~~~~~~~~~~~~-~gvf~~iG~~p~~~~~~~~~~ 248 (305)
T COG0492 186 ERLKKNVKIEVLTNTVVKEILGD--D--VEGVVLKNVKGEEKELPV-DGVFIAIGHLPNTELLKGLGV 248 (305)
T ss_pred HHHHhcCCeEEEeCCceeEEecC--c--cceEEEEecCCceEEEEe-ceEEEecCCCCchHHHhhccc
Confidence 33556679999999999998644 3 889999864466667777 588888888777777776654
No 177
>PRK07538 hypothetical protein; Provisional
Probab=55.06 E-value=61 Score=27.30 Aligned_cols=49 Identities=20% Similarity=0.271 Sum_probs=29.6
Q ss_pred CCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccCCccCh
Q psy17300 15 NTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 15 ~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaGai~tP 68 (152)
+..+++.++.|+.+..++ ++.+ +.+.+ ..|...+++| +.|| +|-.++|.
T Consensus 117 g~~~i~~~~~v~~~~~~~-~~~~--~~~~~~~~g~~~~~~a-dlvI-gADG~~S~ 166 (413)
T PRK07538 117 GPDAVRTGHRVVGFEQDA-DVTV--VFLGDRAGGDLVSVRG-DVLI-GADGIHSA 166 (413)
T ss_pred CCcEEEcCCEEEEEEecC-CceE--EEEeccCCCccceEEe-eEEE-ECCCCCHH
Confidence 346799999999987664 3333 33333 2455567888 3444 44555553
No 178
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=54.68 E-value=42 Score=30.50 Aligned_cols=52 Identities=19% Similarity=0.292 Sum_probs=38.0
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-------CC---------CcEEEEEeCcEEEEccCCccC
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-------PQ---------GKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-------~~---------g~~~~~~a~k~VIlaaGai~t 67 (152)
..++++++++.+.+|..++ ++++++|++.. .+ |.++.+.+ ..||+|.|..-+
T Consensus 501 ~eGv~~~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~a-D~Vi~AiG~~p~ 568 (639)
T PRK12809 501 EEGVEFQFNVQPQYIACDE-DGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPA-DVLIMAFGFQAH 568 (639)
T ss_pred HcCCeEEeccCCEEEEECC-CCeEEEEEEEEEEecCcCCCCCccceecCCceEEEEC-CEEEECcCCCCC
Confidence 5689999999999987654 57888887631 12 34567888 599999996643
No 179
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=54.00 E-value=62 Score=28.35 Aligned_cols=61 Identities=18% Similarity=0.144 Sum_probs=40.0
Q ss_pred hHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 7 ~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
++.......++++++++.+.+|.-. ++. ..|.+.+. +....+.+ ..|++|.|-.-++.+|.
T Consensus 225 ~l~~~L~~~gV~i~~~~~v~~v~~~--~~~-~~v~~~~~-~~~~~i~~-D~vl~a~G~~pn~~~l~ 285 (484)
T TIGR01438 225 KVGEHMEEHGVKFKRQFVPIKVEQI--EAK-VKVTFTDS-TNGIEEEY-DTVLLAIGRDACTRKLN 285 (484)
T ss_pred HHHHHHHHcCCEEEeCceEEEEEEc--CCe-EEEEEecC-CcceEEEe-CEEEEEecCCcCCCcCC
Confidence 3444445678999999999998644 222 23555421 11235777 59999999888877654
No 180
>PRK09126 hypothetical protein; Provisional
Probab=53.73 E-value=78 Score=26.15 Aligned_cols=48 Identities=19% Similarity=0.384 Sum_probs=31.8
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCcc
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSIN 66 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~ 66 (152)
+...++++++.++.|+.+..++ +. ..|.+. +|. .+++ +.||.|.|.-.
T Consensus 120 ~~~~~g~~i~~~~~v~~~~~~~--~~-~~v~~~--~g~--~~~a-~~vI~AdG~~S 167 (392)
T PRK09126 120 VSQQDGIELLTGTRVTAVRTDD--DG-AQVTLA--NGR--RLTA-RLLVAADSRFS 167 (392)
T ss_pred HhhCCCcEEEcCCeEEEEEEcC--Ce-EEEEEc--CCC--EEEe-CEEEEeCCCCc
Confidence 3345789999999999987653 32 235543 453 5777 57777777633
No 181
>PRK06834 hypothetical protein; Provisional
Probab=53.65 E-value=54 Score=28.75 Aligned_cols=49 Identities=24% Similarity=0.311 Sum_probs=33.9
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChH
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVR 69 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~ 69 (152)
.+.+++++.++.|+.+..++ .. |.+...+|. ++++ +.||.|.|+-.+-+
T Consensus 111 ~~~gv~i~~~~~v~~v~~~~--~~---v~v~~~~g~--~i~a-~~vVgADG~~S~vR 159 (488)
T PRK06834 111 GELGVPIYRGREVTGFAQDD--TG---VDVELSDGR--TLRA-QYLVGCDGGRSLVR 159 (488)
T ss_pred HhCCCEEEcCCEEEEEEEcC--Ce---EEEEECCCC--EEEe-CEEEEecCCCCCcH
Confidence 34579999999999998763 32 333323443 5778 79999999865544
No 182
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=53.61 E-value=75 Score=26.29 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=31.4
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccCh
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP 68 (152)
+...++++++.++.|+.+..++ +. ..|.+ .+|. ++++ +.||.|.|. .|+
T Consensus 122 ~~~~~gv~i~~~~~v~~i~~~~--~~-~~v~~--~~g~--~~~a-~~vI~AdG~-~S~ 170 (391)
T PRK08020 122 LEAHPNVTLRCPASLQALQRDD--DG-WELTL--ADGE--EIQA-KLVIGADGA-NSQ 170 (391)
T ss_pred HHcCCCcEEEcCCeeEEEEEcC--Ce-EEEEE--CCCC--EEEe-CEEEEeCCC-Cch
Confidence 3345689999999999987653 22 23443 2443 4777 577777775 443
No 183
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=53.48 E-value=59 Score=27.79 Aligned_cols=53 Identities=21% Similarity=0.152 Sum_probs=35.3
Q ss_pred hcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHH
Q psy17300 12 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 70 (152)
Q Consensus 12 ~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~l 70 (152)
..+. +++++++.|.++.-+ +. .+|.+...++....+.+ ..||+|.|..-+...
T Consensus 220 l~~~-I~i~~~~~v~~i~~~--~~--~~v~~~~~~~~~~~i~~-D~vi~a~G~~p~~~~ 272 (460)
T PRK06292 220 LSKE-FKIKLGAKVTSVEKS--GD--EKVEELEKGGKTETIEA-DYVLVATGRRPNTDG 272 (460)
T ss_pred Hhhc-cEEEcCCEEEEEEEc--CC--ceEEEEEcCCceEEEEe-CEEEEccCCccCCCC
Confidence 3445 999999999998654 22 23443223455556777 589999998766654
No 184
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=53.10 E-value=65 Score=26.82 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=33.4
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHH
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 70 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~l 70 (152)
+...++++++.++.|+++..++ ..+ .|.+. +|. ++++ +.||.|-|.-..-|-
T Consensus 120 ~~~~~~i~i~~~~~v~~~~~~~--~~~-~v~~~--~g~--~~~~-~lvIgADG~~S~vR~ 171 (384)
T PRK08849 120 FAQYPNLTLMCPEKLADLEFSA--EGN-RVTLE--SGA--EIEA-KWVIGADGANSQVRQ 171 (384)
T ss_pred HHhCCCeEEECCCceeEEEEcC--CeE-EEEEC--CCC--EEEe-eEEEEecCCCchhHH
Confidence 3456789999999999998763 332 24443 453 5677 567666665444443
No 185
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=52.82 E-value=61 Score=26.75 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=41.0
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc----------------CCCcEEEEEeCcEEEEccCCccChHHHhh-CC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN----------------PQGKTIKVNANREVVLAANSINSVRILQQ-SG 75 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~----------------~~g~~~~~~a~k~VIlaaGai~tP~lLl~-Sg 75 (152)
...++++++++.+.++.- .+++.+|++.+ .++....+.+ ..||++.|..-++.++.. .|
T Consensus 221 ~~~gi~i~~~~~v~~i~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-D~vi~a~G~~p~~~l~~~~~g 296 (352)
T PRK12770 221 IARGVEFLELVTPVRIIG---EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEA-DTVVFAIGEIPTPPFAKECLG 296 (352)
T ss_pred HHcCCEEeeccCceeeec---CCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEEC-CEEEECcccCCCchhhhcccC
Confidence 356899999999988752 23466666532 1345567888 699999999877765544 45
Q ss_pred C
Q psy17300 76 V 76 (152)
Q Consensus 76 i 76 (152)
+
T Consensus 297 ~ 297 (352)
T PRK12770 297 I 297 (352)
T ss_pred c
Confidence 4
No 186
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=52.18 E-value=31 Score=25.37 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=36.0
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeE----EEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKV----TGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~----~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
.+.++++..++.|.+|... ...+ ..+... ..+....+.+ +.+|+|+|.- |+.+
T Consensus 69 ~~~~v~~~~~~~v~~i~~~--~~~~~~~~~~~~~~-~~~~~~~~~~-d~lviAtG~~--~~~~ 125 (201)
T PF07992_consen 69 KNRGVEIRLNAKVVSIDPE--SKRVVCPAVTIQVV-ETGDGREIKY-DYLVIATGSR--PRTP 125 (201)
T ss_dssp HHHTHEEEHHHTEEEEEES--TTEEEETCEEEEEE-ETTTEEEEEE-EEEEEESTEE--EEEE
T ss_pred ccceEEEeecccccccccc--ccccccCcccceee-ccCCceEecC-CeeeecCccc--ccee
Confidence 3578999999999999776 4433 122222 3456677888 6999999944 5444
No 187
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=52.16 E-value=63 Score=26.60 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=30.4
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCcc
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSIN 66 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~ 66 (152)
+.+.+|++++ ++.|+.+..++ ..+ .|.+. +|. ++++ +.||.|.|+-.
T Consensus 121 ~~~~~~v~~~-~~~v~~i~~~~--~~~-~v~~~--~g~--~~~a-~~vI~adG~~S 167 (388)
T PRK07608 121 LRFQPNLTWF-PARAQGLEVDP--DAA-TLTLA--DGQ--VLRA-DLVVGADGAHS 167 (388)
T ss_pred HHhCCCcEEE-cceeEEEEecC--CeE-EEEEC--CCC--EEEe-eEEEEeCCCCc
Confidence 4445569999 99999987553 332 24443 443 5777 68888888743
No 188
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=52.03 E-value=70 Score=26.72 Aligned_cols=55 Identities=7% Similarity=-0.043 Sum_probs=34.4
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
...+.++..++.|+++.-.+ + ....|.+. .+|++.++++ +.||-|-|+=...|=.
T Consensus 114 ~~~gv~v~~~~~v~~i~~~~-~-~~~~V~~~-~~G~~~~i~a-d~vVgADG~~S~vR~~ 168 (392)
T PRK08243 114 LAAGGPIRFEASDVALHDFD-S-DRPYVTYE-KDGEEHRLDC-DFIAGCDGFHGVSRAS 168 (392)
T ss_pred HhCCCeEEEeeeEEEEEecC-C-CceEEEEE-cCCeEEEEEe-CEEEECCCCCCchhhh
Confidence 34678999999999986421 2 23456664 4677778888 4555555544444333
No 189
>PRK07190 hypothetical protein; Provisional
Probab=51.14 E-value=54 Score=28.76 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=33.9
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHH
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 70 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~l 70 (152)
..++++..++.|+.+..++ .. |.+...+|. +++| +.||.|.|+-.+-|=
T Consensus 121 ~~Gv~v~~~~~v~~l~~~~--~~---v~v~~~~g~--~v~a-~~vVgADG~~S~vR~ 169 (487)
T PRK07190 121 EAGAAVKRNTSVVNIELNQ--AG---CLTTLSNGE--RIQS-RYVIGADGSRSFVRN 169 (487)
T ss_pred HCCCEEEeCCEEEEEEEcC--Ce---eEEEECCCc--EEEe-CEEEECCCCCHHHHH
Confidence 4589999999999998774 22 222213443 6888 799999998554443
No 190
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=50.93 E-value=82 Score=26.64 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=40.6
Q ss_pred HHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCC
Q psy17300 8 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 76 (152)
Q Consensus 8 l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgi 76 (152)
+.....+.++++++++.|.+|.-+ + .+ +.+. +|. .+.+ ..+|+|.|..-+..+|..+|+
T Consensus 185 ~~~~l~~~gV~v~~~~~v~~i~~~--~-~~--v~~~--~g~--~i~~-D~vi~a~G~~p~~~~l~~~gl 243 (427)
T TIGR03385 185 VEEELKKHEINLRLNEEVDSIEGE--E-RV--KVFT--SGG--VYQA-DMVILATGIKPNSELAKDSGL 243 (427)
T ss_pred HHHHHHHcCCEEEeCCEEEEEecC--C-CE--EEEc--CCC--EEEe-CEEEECCCccCCHHHHHhcCc
Confidence 333345678999999999998533 2 22 3333 454 3667 589999999888788877765
No 191
>PRK06184 hypothetical protein; Provisional
Probab=50.82 E-value=78 Score=27.53 Aligned_cols=54 Identities=24% Similarity=0.165 Sum_probs=34.8
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
..++++..++.|+++..++ ..+ .+.+.+.++ ..++++ +.||.|.|+-.+-|=++
T Consensus 121 ~~gv~i~~~~~v~~i~~~~--~~v-~v~~~~~~~-~~~i~a-~~vVgADG~~S~vR~~l 174 (502)
T PRK06184 121 ELGHRVEFGCELVGFEQDA--DGV-TARVAGPAG-EETVRA-RYLVGADGGRSFVRKAL 174 (502)
T ss_pred HCCCEEEeCcEEEEEEEcC--CcE-EEEEEeCCC-eEEEEe-CEEEECCCCchHHHHhC
Confidence 4479999999999997663 333 233432222 356888 68888888765544433
No 192
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=50.80 E-value=63 Score=30.22 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=43.6
Q ss_pred HHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCC
Q psy17300 8 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 76 (152)
Q Consensus 8 l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgi 76 (152)
+.......++++++++.+++|.-+ +.+.+|.+. +|. .+.+ ..||+|.|.--+..++..+|+
T Consensus 188 l~~~l~~~GV~v~~~~~v~~i~~~---~~~~~v~~~--dG~--~i~~-D~Vi~a~G~~Pn~~la~~~gl 248 (785)
T TIGR02374 188 LQRELEQKGLTFLLEKDTVEIVGA---TKADRIRFK--DGS--SLEA-DLIVMAAGIRPNDELAVSAGI 248 (785)
T ss_pred HHHHHHHcCCEEEeCCceEEEEcC---CceEEEEEC--CCC--EEEc-CEEEECCCCCcCcHHHHhcCC
Confidence 333345678999999999988532 356677765 454 4667 699999998877777766665
No 193
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=50.78 E-value=60 Score=28.87 Aligned_cols=60 Identities=22% Similarity=0.208 Sum_probs=40.8
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-------C-------CCcEEEEEeCcEEEEccCCccChHHHhh-CCC
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-------P-------QGKTIKVNANREVVLAANSINSVRILQQ-SGV 76 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-------~-------~g~~~~~~a~k~VIlaaGai~tP~lLl~-Sgi 76 (152)
..++++++++.+.+|.-++ ++.+ +|++.. . .|.+..+.+ ..||+|.|..-.+.+|.. +|+
T Consensus 317 ~~GVki~~~~~~~~i~~~~-~~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~-D~Vi~A~G~~p~~~~~~~~~gl 391 (564)
T PRK12771 317 REGVEINWLRTPVEIEGDE-NGAT-GLRVITVEKMELDEDGRPSPVTGEEETLEA-DLVVLAIGQDIDSAGLESVPGV 391 (564)
T ss_pred HcCCEEEecCCcEEEEcCC-CCEE-EEEEEEEEecccCCCCCeeecCCceEEEEC-CEEEECcCCCCchhhhhhccCc
Confidence 4689999999999986543 3444 765421 1 244567888 599999998776666652 444
No 194
>PRK14727 putative mercuric reductase; Provisional
Probab=50.03 E-value=65 Score=27.98 Aligned_cols=55 Identities=16% Similarity=0.292 Sum_probs=37.3
Q ss_pred HHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 8 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 8 l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
+.....+.++++++++.|+++..++ +. +.+...++ .+.+ ..||+|.|..-+..+|
T Consensus 234 l~~~L~~~GV~i~~~~~V~~i~~~~--~~---~~v~~~~g---~i~a-D~VlvA~G~~pn~~~l 288 (479)
T PRK14727 234 LTACFEKEGIEVLNNTQASLVEHDD--NG---FVLTTGHG---ELRA-EKLLISTGRHANTHDL 288 (479)
T ss_pred HHHHHHhCCCEEEcCcEEEEEEEeC--CE---EEEEEcCC---eEEe-CEEEEccCCCCCccCC
Confidence 3334456789999999999987552 22 23332233 3667 6999999999887764
No 195
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=49.60 E-value=75 Score=26.53 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=31.0
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc----CCCcEEEEEeCcEEEEccCCcc
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN----PQGKTIKVNANREVVLAANSIN 66 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~----~~g~~~~~~a~k~VIlaaGai~ 66 (152)
.+.+++++.. .|+++..+ ++.+ .|.+.+ ..++..+++| +.||.|.|.-.
T Consensus 103 ~~~G~~v~~~-~v~~v~~~--~~~~-~v~~~~~~~~~~~~~~~i~a-~~VI~AdG~~S 155 (388)
T TIGR02023 103 QKAGAELIHG-LFLKLERD--RDGV-TLTYRTPKKGAGGEKGSVEA-DVVIGADGANS 155 (388)
T ss_pred HhCCCEEEee-EEEEEEEc--CCeE-EEEEEeccccCCCcceEEEe-CEEEECCCCCc
Confidence 3457888754 68888665 3333 466653 1334567888 68888888643
No 196
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=48.73 E-value=76 Score=30.74 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=42.7
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-------CC--------CcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-------PQ--------GKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-------~~--------g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
...++++.+++.+.+|..++ ++++++|++.. .+ |.+..+.+ ..||+|.|..-++.++.
T Consensus 620 ~eeGI~~~~~~~p~~i~~~~-~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~-D~Vi~AiG~~p~~~~~~ 692 (1006)
T PRK12775 620 KEEGIDFFFLHSPVEIYVDA-EGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLEC-DTVIYALGTKANPIITQ 692 (1006)
T ss_pred HhCCCEEEecCCcEEEEeCC-CCeEEEEEEEEEEecccCCCCCccccCCCceEEEEc-CEEEECCCcCCChhhhh
Confidence 35789999999999987543 67899988752 11 33457888 59999999887765543
No 197
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=48.69 E-value=29 Score=28.66 Aligned_cols=50 Identities=16% Similarity=0.176 Sum_probs=30.7
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHH
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 70 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~l 70 (152)
+.+.+|.+++.|++|..++ ++++. .+. .+|+ .+.+ +.||++.-+-...+|
T Consensus 209 ~~g~~i~~~~~V~~i~~~~--~~~~~-~~~-~~g~--~~~~-d~vi~a~p~~~~~~l 258 (419)
T TIGR03467 209 SRGGEVRLGTRVRSIEANA--GGIRA-LVL-SGGE--TLPA-DAVVLAVPPRHAASL 258 (419)
T ss_pred HcCCEEEcCCeeeEEEEcC--CcceE-EEe-cCCc--cccC-CEEEEcCCHHHHHHh
Confidence 3467999999999998873 33332 222 2343 4667 588886554333333
No 198
>PRK06116 glutathione reductase; Validated
Probab=48.64 E-value=88 Score=26.73 Aligned_cols=54 Identities=7% Similarity=0.108 Sum_probs=35.9
Q ss_pred hhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHH
Q psy17300 10 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 70 (152)
Q Consensus 10 ~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~l 70 (152)
....+.++++++++.|.+|.-++ ++.+ .|.+. +|. .+.+ ..||+|.|..-+...
T Consensus 216 ~~L~~~GV~i~~~~~V~~i~~~~-~g~~-~v~~~--~g~--~i~~-D~Vv~a~G~~p~~~~ 269 (450)
T PRK06116 216 EEMEKKGIRLHTNAVPKAVEKNA-DGSL-TLTLE--DGE--TLTV-DCLIWAIGREPNTDG 269 (450)
T ss_pred HHHHHCCcEEECCCEEEEEEEcC-CceE-EEEEc--CCc--EEEe-CEEEEeeCCCcCCCC
Confidence 33456789999999999997553 2222 34443 453 4667 689999997655553
No 199
>PRK06847 hypothetical protein; Provisional
Probab=48.64 E-value=1e+02 Score=25.27 Aligned_cols=52 Identities=25% Similarity=0.187 Sum_probs=35.5
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
...++++..++.|+++..+ ++. ..|.+. +|. .+.+ +.||.|.|.-...+-.+
T Consensus 118 ~~~gv~v~~~~~v~~i~~~--~~~-~~v~~~--~g~--~~~a-d~vI~AdG~~s~~r~~l 169 (375)
T PRK06847 118 RAAGADVRLGTTVTAIEQD--DDG-VTVTFS--DGT--TGRY-DLVVGADGLYSKVRSLV 169 (375)
T ss_pred HHhCCEEEeCCEEEEEEEc--CCE-EEEEEc--CCC--EEEc-CEEEECcCCCcchhhHh
Confidence 3467899999999998765 333 234443 454 4667 69999999876666444
No 200
>PLN02576 protoporphyrinogen oxidase
Probab=48.04 E-value=60 Score=27.99 Aligned_cols=52 Identities=25% Similarity=0.376 Sum_probs=33.0
Q ss_pred cEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 17 VQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 17 l~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
-+|.+++.|++|..+. +++ ..|.+.+.+|. ..+.+ +.||++.-+-....||.
T Consensus 252 ~~i~l~~~V~~I~~~~-~~~-~~v~~~~~~g~-~~~~a-d~VI~a~P~~~l~~ll~ 303 (496)
T PLN02576 252 DKVKLNWKVLSLSKND-DGG-YSLTYDTPEGK-VNVTA-KAVVMTAPLYVVSEMLR 303 (496)
T ss_pred CcEEcCCEEEEEEECC-CCc-EEEEEecCCCc-eeEEe-CEEEECCCHHHHHHHhc
Confidence 3699999999998764 222 34555433343 34777 68998876555555543
No 201
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=47.66 E-value=43 Score=28.37 Aligned_cols=56 Identities=21% Similarity=0.290 Sum_probs=35.8
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcC-CCcEEEEEeCcEEEEccCCccChHHHhhCCC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSINSVRILQQSGV 76 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~-~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgi 76 (152)
.+.+++++.++.|++|..+ +. .|.+.+. .+......+ +.+|+|.|+ +|+.+-..|+
T Consensus 55 ~~~gv~~~~~~~V~~id~~--~~---~v~~~~~~~~~~~~~~y-d~lIiATG~--~p~~~~i~G~ 111 (427)
T TIGR03385 55 KKRGIDVKTNHEVIEVNDE--RQ---TVVVRNNKTNETYEESY-DYLILSPGA--SPIVPNIEGI 111 (427)
T ss_pred HhcCCeEEecCEEEEEECC--CC---EEEEEECCCCCEEecCC-CEEEECCCC--CCCCCCCCCc
Confidence 4568899999999998654 32 3444432 233333336 699999998 6665555553
No 202
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=47.42 E-value=89 Score=26.95 Aligned_cols=56 Identities=20% Similarity=0.162 Sum_probs=37.9
Q ss_pred hhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 10 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 10 ~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
......++++++++.|++|.-+. ++ ...|.+. ++. ..+.+ ..||+|.|..-+..+|
T Consensus 215 ~~l~~~gI~i~~~~~v~~i~~~~-~~-~~~v~~~--~g~-~~i~~-D~vi~a~G~~pn~~~l 270 (450)
T TIGR01421 215 EEYEKEGINVHKLSKPVKVEKTV-EG-KLVIHFE--DGK-SIDDV-DELIWAIGRKPNTKGL 270 (450)
T ss_pred HHHHHcCCEEEcCCEEEEEEEeC-Cc-eEEEEEC--CCc-EEEEc-CEEEEeeCCCcCcccC
Confidence 33446789999999999997542 22 2234443 342 45777 6999999988877764
No 203
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=47.30 E-value=58 Score=29.03 Aligned_cols=46 Identities=26% Similarity=0.362 Sum_probs=33.8
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCcc
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSIN 66 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~ 66 (152)
..+.+++.+++|+.|++. ++.+.+|... +| ..+.+ ++||||-|=-+
T Consensus 185 ~~G~ei~f~t~VeDi~~~--~~~~~~v~~~--~g--~~i~~-~~vvlA~Grsg 230 (486)
T COG2509 185 SLGGEIRFNTEVEDIEIE--DNEVLGVKLT--KG--EEIEA-DYVVLAPGRSG 230 (486)
T ss_pred hcCcEEEeeeEEEEEEec--CCceEEEEcc--CC--cEEec-CEEEEccCcch
Confidence 445899999999999988 4456666654 44 34666 79999988433
No 204
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=46.90 E-value=72 Score=27.17 Aligned_cols=54 Identities=13% Similarity=0.282 Sum_probs=36.1
Q ss_pred hhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 10 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 10 ~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
....+.++++++++.|.+|.-+ ++. +.+...++ .+.+ ..|++|.|..-+..+|.
T Consensus 207 ~~l~~~gV~v~~~~~v~~i~~~--~~~---v~v~~~~g---~i~~-D~vl~a~G~~pn~~~l~ 260 (441)
T PRK08010 207 TILRDQGVDIILNAHVERISHH--ENQ---VQVHSEHA---QLAV-DALLIASGRQPATASLH 260 (441)
T ss_pred HHHHhCCCEEEeCCEEEEEEEc--CCE---EEEEEcCC---eEEe-CEEEEeecCCcCCCCcC
Confidence 3345678999999999998754 332 33332233 2566 69999999887776543
No 205
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=45.17 E-value=1.2e+02 Score=25.34 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=31.9
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccC
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~t 67 (152)
+.+.+++++..++.|+.+..++ .. ..|.+. +|+ .++| +.||.|-|+ +|
T Consensus 121 ~~~~~~v~v~~~~~v~~i~~~~--~~-~~v~~~--~g~--~~~a-~lvIgADG~-~S 168 (405)
T PRK08850 121 VQKQDNVTLLMPARCQSIAVGE--SE-AWLTLD--NGQ--ALTA-KLVVGADGA-NS 168 (405)
T ss_pred HhcCCCeEEEcCCeeEEEEeeC--Ce-EEEEEC--CCC--EEEe-CEEEEeCCC-CC
Confidence 3445789999999999997763 22 234443 553 4777 677777774 44
No 206
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=45.08 E-value=1.1e+02 Score=26.52 Aligned_cols=62 Identities=21% Similarity=0.300 Sum_probs=40.1
Q ss_pred hHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH--hhCCC
Q psy17300 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL--QQSGV 76 (152)
Q Consensus 7 ~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL--l~Sgi 76 (152)
++.....+.++++++++.|++|.-+ ++.+ .|.+ .+|. .+.+ ..|+++.|..-+..+| ..+|+
T Consensus 223 ~l~~~L~~~gV~i~~~~~v~~v~~~--~~~~-~v~~--~~g~--~l~~-D~vl~a~G~~pn~~~l~l~~~gl 286 (466)
T PRK07845 223 VLEEVFARRGMTVLKRSRAESVERT--GDGV-VVTL--TDGR--TVEG-SHALMAVGSVPNTAGLGLEEAGV 286 (466)
T ss_pred HHHHHHHHCCcEEEcCCEEEEEEEe--CCEE-EEEE--CCCc--EEEe-cEEEEeecCCcCCCCCCchhhCc
Confidence 3444445678999999999998654 2322 2333 3453 4666 5899999988777653 44444
No 207
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=44.96 E-value=95 Score=25.71 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=34.1
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCCC
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVG 77 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgig 77 (152)
...+++++.++.|+.+..+ ++.+ .|.+ .+|. .+.+ +.||.|.|+ .|. +....|+.
T Consensus 122 ~~~gv~v~~~~~v~~i~~~--~~~v-~v~~--~~g~--~~~a-d~vI~AdG~-~S~-vr~~~g~~ 176 (403)
T PRK07333 122 EALGIDLREATSVTDFETR--DEGV-TVTL--SDGS--VLEA-RLLVAADGA-RSK-LRELAGIK 176 (403)
T ss_pred HhCCCEEEcCCEEEEEEEc--CCEE-EEEE--CCCC--EEEe-CEEEEcCCC-ChH-HHHHcCCC
Confidence 3458999999999998765 3332 2444 3453 4667 577777775 333 44444554
No 208
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=44.83 E-value=1.5e+02 Score=28.52 Aligned_cols=55 Identities=13% Similarity=0.101 Sum_probs=40.2
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-------C--------CCcEEEEEeCcEEEEccCCccChH
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-------P--------QGKTIKVNANREVVLAANSINSVR 69 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-------~--------~g~~~~~~a~k~VIlaaGai~tP~ 69 (152)
..++++..++.+.+|.-++++++++++++.. . .|.+..+.+ ..||+|.|..-++.
T Consensus 496 eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~a-D~VI~AiG~~p~~~ 565 (944)
T PRK12779 496 EEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPV-DLVIMALGNTANPI 565 (944)
T ss_pred HCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEEC-CEEEEcCCcCCChh
Confidence 4689999999999987654355788876631 1 244567888 69999999876654
No 209
>KOG1399|consensus
Probab=44.68 E-value=78 Score=27.83 Aligned_cols=67 Identities=19% Similarity=0.179 Sum_probs=46.9
Q ss_pred hhHHhhhcCCCc--EEEcCcEEEEEEEeCCCCeEEEEEEEcCCCc--EEEEEeCcEEEEccCCccChHHHhhCCCC
Q psy17300 6 IFLRAIKDKNTV--QVSKNSEVTKLCFDETKTKVTGVEFRNPQGK--TIKVNANREVVLAANSINSVRILQQSGVG 77 (152)
Q Consensus 6 ~~l~~~~~~~nl--~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~--~~~~~a~k~VIlaaGai~tP~lLl~Sgig 77 (152)
.||...+++-++ .+..++.|.++.... .....|.+.+..+. ++.+ +-|++|.|-...|++=+.+|.+
T Consensus 94 ~YL~~yA~~F~l~~~i~f~~~v~~v~~~~--~gkW~V~~~~~~~~~~~~if---d~VvVctGh~~~P~~P~~~g~~ 164 (448)
T KOG1399|consen 94 EYLRDYAKHFDLLKMINFNTEVVRVDSID--KGKWRVTTKDNGTQIEEEIF---DAVVVCTGHYVEPRIPQIPGPG 164 (448)
T ss_pred HHHHHHHHhcChhhheEecccEEEEeecc--CCceeEEEecCCcceeEEEe---eEEEEcccCcCCCCCCcCCCCc
Confidence 577776666555 688888888876552 14677888754332 3333 6899999999669998888865
No 210
>KOG2311|consensus
Probab=44.16 E-value=35 Score=30.91 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=40.0
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCC--CeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETK--TKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~--~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
+...+||.|+-++.+.=|+.+.++ .++.||... +| ..|.| +-|||..|++-+.+|-
T Consensus 134 i~st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~--dg--t~v~a-~~VilTTGTFL~~~I~ 191 (679)
T KOG2311|consen 134 ISSTPNLEIREGAVADLIVEDPDDGHCVVSGVVLV--DG--TVVYA-ESVILTTGTFLRGQIN 191 (679)
T ss_pred hccCCcchhhhhhhhheeeccCCCCceEEEEEEEe--cC--cEecc-ceEEEeeccceeeEEe
Confidence 345789999988755554444322 368888887 44 34777 7999999999888775
No 211
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=43.82 E-value=64 Score=27.36 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=32.6
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcC-CCcEEEEEeCcEEEEccCCc
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-QGKTIKVNANREVVLAANSI 65 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~-~g~~~~~~a~k~VIlaaGai 65 (152)
.+.+++++.++.|++|..+ +. .|.+.+. ++....+.. +.+|+|.|+-
T Consensus 67 ~~~gv~~~~~~~V~~id~~--~~---~v~~~~~~~~~~~~~~y-d~lviAtG~~ 114 (444)
T PRK09564 67 IKSGIDVKTEHEVVKVDAK--NK---TITVKNLKTGSIFNDTY-DKLMIATGAR 114 (444)
T ss_pred HHCCCeEEecCEEEEEECC--CC---EEEEEECCCCCEEEecC-CEEEECCCCC
Confidence 4568999999999999766 33 3555432 344455446 6999999984
No 212
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=43.35 E-value=95 Score=25.38 Aligned_cols=49 Identities=33% Similarity=0.393 Sum_probs=31.8
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccCh
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP 68 (152)
+.+.....+..++.|..+.-+ + ++.+|... .|. +.| +.||+|+|+....
T Consensus 166 ~~~~G~~~~~~~~~~~~~~~~--~-~~~~v~t~--~g~---i~a-~~vv~a~G~~~~~ 214 (387)
T COG0665 166 AEELGVVIIEGGTPVTSLERD--G-RVVGVETD--GGT---IEA-DKVVLAAGAWAGE 214 (387)
T ss_pred HHhcCCeEEEccceEEEEEec--C-cEEEEEeC--Ccc---EEe-CEEEEcCchHHHH
Confidence 333444678889999887644 3 44555543 443 777 6999999976443
No 213
>PRK08013 oxidoreductase; Provisional
Probab=43.09 E-value=1.1e+02 Score=25.60 Aligned_cols=49 Identities=20% Similarity=0.311 Sum_probs=30.4
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccCh
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP 68 (152)
+.+.++++++.++.|+.+..++ .. +.|.+. +|. ++++ +.||-|-| ++|.
T Consensus 121 ~~~~~~v~i~~~~~v~~i~~~~--~~-v~v~~~--~g~--~i~a-~lvVgADG-~~S~ 169 (400)
T PRK08013 121 AQQSSDITLLAPAELQQVAWGE--NE-AFLTLK--DGS--MLTA-RLVVGADG-ANSW 169 (400)
T ss_pred HhcCCCcEEEcCCeeEEEEecC--Ce-EEEEEc--CCC--EEEe-eEEEEeCC-CCcH
Confidence 4445689999999999997663 22 223443 453 5777 45555555 4443
No 214
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=42.89 E-value=1.8e+02 Score=25.90 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=40.0
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEE--eCc---EEEEccCCccChHHHh
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVN--ANR---EVVLAANSINSVRILQ 72 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~--a~k---~VIlaaGai~tP~lLl 72 (152)
+....++++++++.|++|.- ++.+..+.+.+ .+|....+. ++. .||++.|..-+..++.
T Consensus 188 ~~~~~gV~i~~~~~V~~i~~---~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~ 252 (555)
T TIGR03143 188 VKNHPKIEVKFNTELKEATG---DDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFK 252 (555)
T ss_pred HHhCCCcEEEeCCEEEEEEc---CCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHh
Confidence 34456899999999999862 34566666654 346555443 432 3999999988887654
No 215
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=42.29 E-value=1.4e+02 Score=24.75 Aligned_cols=52 Identities=10% Similarity=0.212 Sum_probs=33.4
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
+.+.++++++.++.|+++..++ ..+ .|.+. ++ ++++ +.||-|-|.-.+-|=+
T Consensus 114 ~~~~~~v~~~~~~~v~~i~~~~--~~v-~v~~~--~~---~~~a-dlvIgADG~~S~vR~~ 165 (374)
T PRK06617 114 ITNNPLITLIDNNQYQEVISHN--DYS-IIKFD--DK---QIKC-NLLIICDGANSKVRSH 165 (374)
T ss_pred HhcCCCcEEECCCeEEEEEEcC--CeE-EEEEc--CC---EEee-CEEEEeCCCCchhHHh
Confidence 4455679999999999987663 332 24442 33 5777 5777777765444433
No 216
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=42.11 E-value=94 Score=28.79 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=40.5
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-------CC---------CcEEEEEeCcEEEEccCCccChHH
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-------PQ---------GKTIKVNANREVVLAANSINSVRI 70 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-------~~---------g~~~~~~a~k~VIlaaGai~tP~l 70 (152)
...+++++.++.+.+|.-++ ++++++|++.. .+ |.+..+.+ ..||+|.|..-+..+
T Consensus 619 ~~~GV~i~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~-D~Vi~A~G~~p~~~l 690 (752)
T PRK12778 619 KEEGIEFLTLHNPIEYLADE-KGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDV-DLVIVSVGVSPNPLV 690 (752)
T ss_pred HHcCCEEEecCcceEEEECC-CCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEEC-CEEEECcCCCCCccc
Confidence 35689999999999987553 57888988741 12 33456888 599999997766544
No 217
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=41.62 E-value=1.1e+02 Score=23.81 Aligned_cols=50 Identities=20% Similarity=0.225 Sum_probs=31.1
Q ss_pred hHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCc
Q psy17300 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSI 65 (152)
Q Consensus 7 ~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai 65 (152)
++.....+.++++++ +.|++|..+ +.. ..|.. .++. .+++ +.+|+|+|.-
T Consensus 62 ~l~~~~~~~gv~~~~-~~v~~v~~~--~~~-~~v~~--~~~~--~~~~-d~liiAtG~~ 111 (300)
T TIGR01292 62 KMKEQAVKFGAEIIY-EEVIKVDLS--DRP-FKVKT--GDGK--EYTA-KAVIIATGAS 111 (300)
T ss_pred HHHHHHHHcCCeEEE-EEEEEEEec--CCe-eEEEe--CCCC--EEEe-CEEEECCCCC
Confidence 444434456789988 889988765 222 12332 2343 4666 6999999984
No 218
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=41.44 E-value=1.5e+02 Score=27.04 Aligned_cols=56 Identities=23% Similarity=0.216 Sum_probs=37.4
Q ss_pred CcEEEcCcEEEEEEEeCCCCeEEEEEEEcC----CCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 16 TVQVSKNSEVTKLCFDETKTKVTGVEFRNP----QGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 16 nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~----~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
++.+..++.|+.+..++++..-+.|.+.+. +|.+.+++| +.||-|=|+=.+-|=++
T Consensus 157 ~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A-~~lVGaDGa~S~VR~~l 216 (634)
T PRK08294 157 RLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRA-KYVVGCDGARSRVRKAI 216 (634)
T ss_pred ceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEe-CEEEECCCCchHHHHhc
Confidence 468888999999987642323344566643 465678998 67777777766655544
No 219
>PRK13984 putative oxidoreductase; Provisional
Probab=41.35 E-value=1e+02 Score=27.66 Aligned_cols=56 Identities=25% Similarity=0.327 Sum_probs=40.3
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc------CCC---------cEEEEEeCcEEEEccCCccChHHHh
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN------PQG---------KTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~------~~g---------~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
..++++++++.+.++..+ ++++++|++.+ .+| .+..+.+ ..||+|.|..-+..+|.
T Consensus 474 ~~GV~i~~~~~~~~i~~~--~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~a-D~Vi~aiG~~p~~~~l~ 544 (604)
T PRK13984 474 EEGVVIYPGWGPMEVVIE--NDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEA-DMVVEAIGQAPDYSYLP 544 (604)
T ss_pred HcCCEEEeCCCCEEEEcc--CCEEEEEEEEEEeeccCCCCCccceecCCceEEEEC-CEEEEeeCCCCChhhhh
Confidence 368999999989887543 67888887642 122 3457888 59999999887666654
No 220
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=41.08 E-value=97 Score=27.24 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=38.4
Q ss_pred HHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 8 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 8 l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
+.....+.++++++++.|.+|.-++ .....|.+. ++. .+.+ ..|++|.|..-+..+|
T Consensus 237 l~~~L~~~GI~i~~~~~v~~i~~~~--~~~~~v~~~--~g~--~i~~-D~vl~a~G~~Pn~~~l 293 (486)
T TIGR01423 237 LTKQLRANGINIMTNENPAKVTLNA--DGSKHVTFE--SGK--TLDV-DVVMMAIGRVPRTQTL 293 (486)
T ss_pred HHHHHHHcCCEEEcCCEEEEEEEcC--CceEEEEEc--CCC--EEEc-CEEEEeeCCCcCcccC
Confidence 3334456789999999999986542 223345443 343 4777 5899999987776654
No 221
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=40.62 E-value=85 Score=27.61 Aligned_cols=50 Identities=22% Similarity=0.275 Sum_probs=33.2
Q ss_pred hHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCC
Q psy17300 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANS 64 (152)
Q Consensus 7 ~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGa 64 (152)
++.....+-+++++.++.|++|..++ + ...|.. .++. .+++ +.+|+|.|+
T Consensus 271 ~l~~~~~~~gv~i~~~~~V~~I~~~~--~-~~~V~~--~~g~--~i~a-~~vViAtG~ 320 (517)
T PRK15317 271 ALEEHVKEYDVDIMNLQRASKLEPAA--G-LIEVEL--ANGA--VLKA-KTVILATGA 320 (517)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEEecC--C-eEEEEE--CCCC--EEEc-CEEEECCCC
Confidence 44444445679999999999987652 2 223333 2443 4666 799999998
No 222
>PLN02507 glutathione reductase
Probab=39.90 E-value=1.4e+02 Score=26.26 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=37.3
Q ss_pred HHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 8 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 8 l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
+.....+.++++++++.|.++.-+ ++.+ .|.. .+|. .+.+ ..|+++.|..-+..+|
T Consensus 250 l~~~l~~~GI~i~~~~~V~~i~~~--~~~~-~v~~--~~g~--~i~~-D~vl~a~G~~pn~~~l 305 (499)
T PLN02507 250 VARNLEGRGINLHPRTNLTQLTKT--EGGI-KVIT--DHGE--EFVA-DVVLFATGRAPNTKRL 305 (499)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEe--CCeE-EEEE--CCCc--EEEc-CEEEEeecCCCCCCCC
Confidence 333345678999999999998754 2222 2332 3443 4677 5999999988777664
No 223
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=39.87 E-value=70 Score=27.85 Aligned_cols=52 Identities=25% Similarity=0.389 Sum_probs=34.0
Q ss_pred hhHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCC
Q psy17300 6 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANS 64 (152)
Q Consensus 6 ~~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGa 64 (152)
.+|.......+++++.++ |..+.+++ ++.+++|... +| .+++| +-||=|+|.
T Consensus 158 ~~L~~~A~~~Gv~~~~g~-V~~v~~~~-~g~i~~v~~~--~g--~~i~a-d~~IDASG~ 209 (454)
T PF04820_consen 158 QFLRRHAEERGVEVIEGT-VVDVELDE-DGRITAVRLD--DG--RTIEA-DFFIDASGR 209 (454)
T ss_dssp HHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEET--TS--EEEEE-SEEEE-SGG
T ss_pred HHHHHHHhcCCCEEEeCE-EEEEEEcC-CCCEEEEEEC--CC--CEEEE-eEEEECCCc
Confidence 455553344589998875 88888876 7888999886 34 46788 577777763
No 224
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=39.46 E-value=48 Score=28.85 Aligned_cols=59 Identities=17% Similarity=0.284 Sum_probs=39.7
Q ss_pred hhhhHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHH
Q psy17300 4 SSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRI 70 (152)
Q Consensus 4 ~~~~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~l 70 (152)
+..|+.++.+.=.=.|.+++.|.+|..-+ .||++.+.+|+..+| ..||+++-+-+--.+
T Consensus 219 S~~yvq~laa~~~~~i~t~~~V~~l~rlP-----dGv~l~~~~G~s~rF---D~vViAth~dqAl~m 277 (447)
T COG2907 219 SRAYVQRLAADIRGRIETRTPVCRLRRLP-----DGVVLVNADGESRRF---DAVVIATHPDQALAL 277 (447)
T ss_pred hHHHHHHHhccccceeecCCceeeeeeCC-----CceEEecCCCCcccc---ceeeeecChHHHHHh
Confidence 45678776543223499999999986543 377777667888888 578888766554333
No 225
>KOG2852|consensus
Probab=39.34 E-value=68 Score=27.32 Aligned_cols=65 Identities=18% Similarity=0.358 Sum_probs=42.7
Q ss_pred hHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCC
Q psy17300 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 76 (152)
Q Consensus 7 ~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgi 76 (152)
.+..++++.+++++.+. |..|. |+ ..++.+|.+....+.-+...+ ..+|||+|.- |++||..-+|
T Consensus 153 i~sea~k~~~V~lv~Gk-v~ev~-dE-k~r~n~v~~ae~~~ti~~~d~-~~ivvsaGPW-Tskllp~~rI 217 (380)
T KOG2852|consen 153 ILSEAEKRGGVKLVFGK-VKEVS-DE-KHRINSVPKAEAEDTIIKADV-HKIVVSAGPW-TSKLLPFTRI 217 (380)
T ss_pred HHHHHHhhcCeEEEEee-eEEee-cc-cccccccchhhhcCceEEeee-eEEEEecCCC-chhhcccccc
Confidence 44557788889998886 45554 32 567777776622233344555 6889999974 7778876654
No 226
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=38.41 E-value=1.3e+02 Score=25.07 Aligned_cols=50 Identities=18% Similarity=0.245 Sum_probs=32.8
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
+.++++..++.|+.+..+. +.+ .|.+ .+|. ++.+ +.||.|.|+=...|=+
T Consensus 124 ~~gv~v~~~~~v~~i~~~~--~~v-~v~~--~~g~--~~~a-~~vVgAdG~~S~vR~~ 173 (405)
T PRK05714 124 DSDIGLLANARLEQMRRSG--DDW-LLTL--ADGR--QLRA-PLVVAADGANSAVRRL 173 (405)
T ss_pred cCCCEEEcCCEEEEEEEcC--CeE-EEEE--CCCC--EEEe-CEEEEecCCCchhHHh
Confidence 4579999999999987653 322 2444 3453 4677 6888888874444333
No 227
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=38.36 E-value=1.5e+02 Score=24.43 Aligned_cols=47 Identities=21% Similarity=0.243 Sum_probs=28.7
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCcc
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSIN 66 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~ 66 (152)
+.+.+++. +.++.|+.+..+ ++.++ |.+ .+|. .+++ +.||.|.|+-.
T Consensus 121 ~~~~~~~~-~~~~~v~~i~~~--~~~~~-v~~--~~g~--~~~a-~~vI~AdG~~S 167 (388)
T PRK07494 121 VAELPNIT-RFGDEAESVRPR--EDEVT-VTL--ADGT--TLSA-RLVVGADGRNS 167 (388)
T ss_pred HhcCCCcE-EECCeeEEEEEc--CCeEE-EEE--CCCC--EEEE-eEEEEecCCCc
Confidence 34445666 779999998765 33332 443 2443 4677 67777777643
No 228
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=37.73 E-value=1.3e+02 Score=25.71 Aligned_cols=56 Identities=14% Similarity=0.111 Sum_probs=36.4
Q ss_pred HHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCC
Q psy17300 8 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 76 (152)
Q Consensus 8 l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgi 76 (152)
+.....+.++++++++.|.++.- . .|.+. +|. ++.+ ..+|++.|.-.+| ++..+|+
T Consensus 234 ~~~~L~~~gV~v~~~~~v~~v~~----~---~v~~~--~g~--~i~~-d~vi~~~G~~~~~-~~~~~~l 289 (424)
T PTZ00318 234 GQRRLRRLGVDIRTKTAVKEVLD----K---EVVLK--DGE--VIPT-GLVVWSTGVGPGP-LTKQLKV 289 (424)
T ss_pred HHHHHHHCCCEEEeCCeEEEEeC----C---EEEEC--CCC--EEEc-cEEEEccCCCCcc-hhhhcCC
Confidence 33344567899999999998742 2 34443 454 4666 5888888866654 5555553
No 229
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=37.64 E-value=1.1e+02 Score=26.88 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=30.5
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCc
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSI 65 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai 65 (152)
.+.++++++++.|++|..+. .. ..|.. .+|. .+.+ +.+|+|+|+-
T Consensus 278 ~~~gv~i~~~~~V~~I~~~~--~~-~~v~~--~~g~--~i~~-d~lIlAtGa~ 322 (515)
T TIGR03140 278 KQYPIDLMENQRAKKIETED--GL-IVVTL--ESGE--VLKA-KSVIVATGAR 322 (515)
T ss_pred HHhCCeEEcCCEEEEEEecC--Ce-EEEEE--CCCC--EEEe-CEEEECCCCC
Confidence 34689999999999987652 21 22332 3443 4666 6999999984
No 230
>PRK14694 putative mercuric reductase; Provisional
Probab=37.40 E-value=1.3e+02 Score=26.01 Aligned_cols=55 Identities=11% Similarity=0.257 Sum_probs=36.4
Q ss_pred HHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 8 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 8 l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
+.....+.++++++++.|.+|..+ +.. +.+.. ++. .+.+ ..||+|.|..-+..+|
T Consensus 224 l~~~l~~~GI~v~~~~~v~~i~~~--~~~---~~v~~-~~~--~i~~-D~vi~a~G~~pn~~~l 278 (468)
T PRK14694 224 IEAAFRREGIEVLKQTQASEVDYN--GRE---FILET-NAG--TLRA-EQLLVATGRTPNTENL 278 (468)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEc--CCE---EEEEE-CCC--EEEe-CEEEEccCCCCCcCCC
Confidence 333344678999999999998654 332 22221 222 3777 5899999988777665
No 231
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=36.14 E-value=2.1e+02 Score=27.63 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=31.9
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc------CC----CcEEEEEeCcEEEEccCCccC
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN------PQ----GKTIKVNANREVVLAANSINS 67 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~------~~----g~~~~~~a~k~VIlaaGai~t 67 (152)
+...+|+++++++.|..+. + +..+.-+.-.+ .. .....+++ +.||||+|+...
T Consensus 225 l~~~~~v~v~~~t~V~~i~-~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a-~~VILATGa~~r 287 (985)
T TIGR01372 225 LTAMPEVTLLPRTTAFGYY-D--HNTVGALERVTDHLDAPPKGVPRERLWRIRA-KRVVLATGAHER 287 (985)
T ss_pred HhcCCCcEEEcCCEEEEEe-c--CCeEEEEEEeeeccccccCCccccceEEEEc-CEEEEcCCCCCc
Confidence 3345679999999998873 2 23333222110 01 12235777 799999999653
No 232
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=35.83 E-value=1.7e+02 Score=25.05 Aligned_cols=57 Identities=16% Similarity=0.270 Sum_probs=40.2
Q ss_pred HHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCC
Q psy17300 8 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 76 (152)
Q Consensus 8 l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgi 76 (152)
+.....+.++++++++.|.++. +. .|.+. +|. .+.+ ..|++|.|..-++.+|..+|+
T Consensus 195 l~~~l~~~gI~i~~~~~v~~i~----~~---~v~~~--~g~--~~~~-D~vl~a~G~~pn~~~l~~~gl 251 (438)
T PRK13512 195 ILDELDKREIPYRLNEEIDAIN----GN---EVTFK--SGK--VEHY-DMIIEGVGTHPNSKFIESSNI 251 (438)
T ss_pred HHHHHHhcCCEEEECCeEEEEe----CC---EEEEC--CCC--EEEe-CEEEECcCCCcChHHHHhcCc
Confidence 3334456789999999999983 22 34443 343 3566 589999999988888877765
No 233
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=35.47 E-value=1.5e+02 Score=26.11 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=34.7
Q ss_pred hHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCc
Q psy17300 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSI 65 (152)
Q Consensus 7 ~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai 65 (152)
++.......++++.+++.|+++.-+ ++. ..+.+. +|....+++ ..|++|.|=.
T Consensus 219 ~~~~~l~~~gv~i~~~~~v~~~~~~--~~~-v~v~~~--~g~~~~~~a-d~vLvAiGR~ 271 (454)
T COG1249 219 ELTKQLEKGGVKILLNTKVTAVEKK--DDG-VLVTLE--DGEGGTIEA-DAVLVAIGRK 271 (454)
T ss_pred HHHHHHHhCCeEEEccceEEEEEec--CCe-EEEEEe--cCCCCEEEe-eEEEEccCCc
Confidence 3333334478999999999998755 233 455555 333336777 5889988855
No 234
>PRK06475 salicylate hydroxylase; Provisional
Probab=35.07 E-value=1.5e+02 Score=24.74 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=29.5
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccCh
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP 68 (152)
+.+++++..++.|+++..++ .. ..|.+.+.++. .++.+ .+|++|-.++|.
T Consensus 119 ~~~~i~v~~~~~v~~~~~~~--~~-v~v~~~~~~~~-~~~~a--dlvIgADG~~S~ 168 (400)
T PRK06475 119 NNPGIEIKLGAEMTSQRQTG--NS-ITATIIRTNSV-ETVSA--AYLIACDGVWSM 168 (400)
T ss_pred hcCCcEEEECCEEEEEecCC--Cc-eEEEEEeCCCC-cEEec--CEEEECCCccHh
Confidence 44689999999999987653 32 23444422222 34666 455555555554
No 235
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=34.91 E-value=1.7e+02 Score=24.46 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=26.2
Q ss_pred EEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCC
Q psy17300 18 QVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANS 64 (152)
Q Consensus 18 ~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGa 64 (152)
+|.+++.|++|..+. +. ..|.+ .+|+ .+.+ +.||+++-.
T Consensus 235 ~i~~~~~V~~i~~~~--~~-~~v~~--~~g~--~~~~-d~vI~a~p~ 273 (451)
T PRK11883 235 TIHKGTPVTKIDKSG--DG-YEIVL--SNGG--EIEA-DAVIVAVPH 273 (451)
T ss_pred eEEeCCEEEEEEEcC--Ce-EEEEE--CCCC--EEEc-CEEEECCCH
Confidence 799999999998763 32 23333 3554 3566 588887654
No 236
>PRK13748 putative mercuric reductase; Provisional
Probab=34.76 E-value=1.5e+02 Score=26.15 Aligned_cols=54 Identities=13% Similarity=0.248 Sum_probs=36.1
Q ss_pred HhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 9 RAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 9 ~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
.......++++++++.|.+|..+ ++. +.+...++ .+.+ ..||+|.|..-+..+|
T Consensus 317 ~~~l~~~gI~i~~~~~v~~i~~~--~~~---~~v~~~~~---~i~~-D~vi~a~G~~pn~~~l 370 (561)
T PRK13748 317 TAAFRAEGIEVLEHTQASQVAHV--DGE---FVLTTGHG---ELRA-DKLLVATGRAPNTRSL 370 (561)
T ss_pred HHHHHHCCCEEEcCCEEEEEEec--CCE---EEEEecCC---eEEe-CEEEEccCCCcCCCCc
Confidence 33345678999999999998754 332 22321223 3677 6999999988777654
No 237
>PLN02676 polyamine oxidase
Probab=34.54 E-value=1e+02 Score=27.12 Aligned_cols=38 Identities=18% Similarity=0.403 Sum_probs=26.8
Q ss_pred cEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEcc
Q psy17300 17 VQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAA 62 (152)
Q Consensus 17 l~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaa 62 (152)
-.|++++.|++|..++ + +|.+...+|. +++| +.||++.
T Consensus 245 ~~I~l~~~V~~I~~~~--~---gV~V~~~~G~--~~~a-~~VIvtv 282 (487)
T PLN02676 245 PRLKLNKVVREISYSK--N---GVTVKTEDGS--VYRA-KYVIVSV 282 (487)
T ss_pred CceecCCEeeEEEEcC--C---cEEEEECCCC--EEEe-CEEEEcc
Confidence 4699999999998763 2 3555434553 4777 6888876
No 238
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=34.10 E-value=80 Score=26.96 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=29.8
Q ss_pred hhcCCCcEEEcCcEEEEEEEe-CCCCeEEEEEEEcCCCcEEEEEeCcEEEEcc
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFD-ETKTKVTGVEFRNPQGKTIKVNANREVVLAA 62 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~-~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaa 62 (152)
+.++.+.++ .++.|++|... +++.....|.+.+..+...... +.||+|+
T Consensus 134 ll~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~y--D~VVIAt 183 (368)
T PF07156_consen 134 LLEASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEY--DIVVIAT 183 (368)
T ss_pred HHHHccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccC--CEEEECC
Confidence 445677888 89999999332 2234455677764333322222 5888875
No 239
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=32.98 E-value=1.7e+02 Score=25.01 Aligned_cols=54 Identities=13% Similarity=0.218 Sum_probs=35.2
Q ss_pred hhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 10 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 10 ~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
....+.++++++++.|.++.-++ +. ..|.+. ++. .+.+ ..||+|.|..-+...|
T Consensus 215 ~~l~~~gV~i~~~~~v~~i~~~~--~~-~~v~~~--~g~--~i~~-D~viva~G~~pn~~~l 268 (446)
T TIGR01424 215 RNMEGRGIRIHPQTSLTSITKTD--DG-LKVTLS--HGE--EIVA-DVVLFATGRSPNTKGL 268 (446)
T ss_pred HHHHHCCCEEEeCCEEEEEEEcC--Ce-EEEEEc--CCc--Eeec-CEEEEeeCCCcCCCcC
Confidence 33446789999999999986542 22 223332 443 4666 6899999987665543
No 240
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=32.97 E-value=1.1e+02 Score=25.86 Aligned_cols=47 Identities=28% Similarity=0.382 Sum_probs=30.7
Q ss_pred cEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 17 VQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 17 l~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
.+|++++.|++|..++ +.+ .|.. .+|. ++.+ +.||++.-+-..+.||
T Consensus 238 ~~i~~~~~V~~I~~~~--~~~-~v~~--~~g~--~~~a-d~VI~t~P~~~~~~ll 284 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRG--SNY-TLEL--DNGV--TVET-DSVVVTAPHKAAAGLL 284 (462)
T ss_pred CeEEcCCeEEEEEecC--CcE-EEEE--CCCc--EEEc-CEEEECCCHHHHHHHh
Confidence 5799999999998763 322 2332 3553 4677 6899887765555554
No 241
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=32.71 E-value=87 Score=30.60 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=42.7
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcC-------C------C-------------cEEEEEeCcEEEEccCCccC
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-------Q------G-------------KTIKVNANREVVLAANSINS 67 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~-------~------g-------------~~~~~~a~k~VIlaaGai~t 67 (152)
..++++..++...+|..|+ ++++++++|... . + .+.++.| +.||+|+|.-.+
T Consensus 652 eEGV~f~~~~~P~~i~~d~-~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~vi~A~G~~~~ 729 (1028)
T PRK06567 652 ALGVDFKENMQPLRINVDK-YGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKT-KTVIMAIGIENN 729 (1028)
T ss_pred HcCcEEEecCCcEEEEecC-CCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccC-CEEEEecccCCc
Confidence 5789999999999998765 679999998731 1 1 4467888 799999997665
Q ss_pred hHHH
Q psy17300 68 VRIL 71 (152)
Q Consensus 68 P~lL 71 (152)
-..+
T Consensus 730 ~~~~ 733 (1028)
T PRK06567 730 TQFD 733 (1028)
T ss_pred cccc
Confidence 5543
No 242
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=32.42 E-value=1.1e+02 Score=25.36 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=29.2
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCc
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSI 65 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai 65 (152)
.+.+++++.++.|++|..+ ...+. . ++. .+.. +.+|||.|+-
T Consensus 69 ~~~gv~~~~~~~V~~id~~--~~~v~---~---~~~--~~~y-d~LVlATG~~ 110 (377)
T PRK04965 69 EQFNLRLFPHTWVTDIDAE--AQVVK---S---QGN--QWQY-DKLVLATGAS 110 (377)
T ss_pred HhCCCEEECCCEEEEEECC--CCEEE---E---CCe--EEeC-CEEEECCCCC
Confidence 4568999999999998765 33222 1 332 4556 6999999984
No 243
>KOG1335|consensus
Probab=32.17 E-value=1.7e+02 Score=25.96 Aligned_cols=50 Identities=14% Similarity=0.229 Sum_probs=35.9
Q ss_pred hhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccC
Q psy17300 11 IKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAAN 63 (152)
Q Consensus 11 ~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaG 63 (152)
.....++++.+++.|..+..+.++ -.-|++.+ .+++..++.+ ....+|.|
T Consensus 261 ~L~kQgikF~l~tkv~~a~~~~dg--~v~i~ve~ak~~k~~tle~-DvlLVsiG 311 (506)
T KOG1335|consen 261 VLQKQGIKFKLGTKVTSATRNGDG--PVEIEVENAKTGKKETLEC-DVLLVSIG 311 (506)
T ss_pred HHHhcCceeEeccEEEEeeccCCC--ceEEEEEecCCCceeEEEe-eEEEEEcc
Confidence 344578999999999999877532 45666666 4567778888 46666665
No 244
>PLN02507 glutathione reductase
Probab=31.84 E-value=1.4e+02 Score=26.18 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=25.6
Q ss_pred hcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCc
Q psy17300 12 KDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSI 65 (152)
Q Consensus 12 ~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai 65 (152)
....+++++.+ .+..+ +. . .+.+...+|++..+.+ +.+|||+|+-
T Consensus 134 l~~~gV~~i~g-~a~~v--d~--~---~v~V~~~~g~~~~~~~-d~LIIATGs~ 178 (499)
T PLN02507 134 LANAGVKLYEG-EGKIV--GP--N---EVEVTQLDGTKLRYTA-KHILIATGSR 178 (499)
T ss_pred HHhCCcEEEEE-EEEEe--cC--C---EEEEEeCCCcEEEEEc-CEEEEecCCC
Confidence 34456666665 33333 21 1 2333334566666777 6999999973
No 245
>KOG2415|consensus
Probab=31.50 E-value=1.1e+02 Score=27.50 Aligned_cols=80 Identities=15% Similarity=0.306 Sum_probs=56.5
Q ss_pred hhHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc----CCCc-------EEEEEeCcEEEEccCCcc--ChHHHh
Q psy17300 6 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN----PQGK-------TIKVNANREVVLAANSIN--SVRILQ 72 (152)
Q Consensus 6 ~~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~----~~g~-------~~~~~a~k~VIlaaGai~--tP~lLl 72 (152)
.||..-.+.-+++|++..-+..+++++ ++.|.||...| .+|. -..++| |.-|.|-|.-+ |-||+.
T Consensus 187 ~wLg~kAEe~GvEiyPg~aaSevly~e-dgsVkGiaT~D~GI~k~G~pKd~FerGme~ha-k~TifAEGc~G~Lskqi~k 264 (621)
T KOG2415|consen 187 RWLGEKAEELGVEIYPGFAASEVLYDE-DGSVKGIATNDVGISKDGAPKDTFERGMEFHA-KVTIFAEGCHGSLSKQIIK 264 (621)
T ss_pred HHHHHHHHhhCceeccccchhheeEcC-CCcEeeEeeccccccCCCCccccccccceecc-eeEEEeccccchhHHHHHH
Confidence 466554556789999999999999997 67899998775 2332 235777 67777776655 568887
Q ss_pred hCCCCChhhhhhcCC
Q psy17300 73 QSGVGDAALLSKYNI 87 (152)
Q Consensus 73 ~Sgig~~~~l~~~gi 87 (152)
.=++....+.+..||
T Consensus 265 kf~Lr~n~e~qtYgl 279 (621)
T KOG2415|consen 265 KFDLRENCEPQTYGL 279 (621)
T ss_pred HhCcccCCCcceecc
Confidence 776665555555544
No 246
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=31.28 E-value=1.8e+02 Score=25.21 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=31.5
Q ss_pred hHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcC-----CCcEEEEEeCcEEEEccCC
Q psy17300 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP-----QGKTIKVNANREVVLAANS 64 (152)
Q Consensus 7 ~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~-----~g~~~~~~a~k~VIlaaGa 64 (152)
+|.....+.+.+++.. .+.+|..+.++.....|.+.+. .|...+++| +.||-|-|+
T Consensus 137 ~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a-~~VIgADG~ 197 (450)
T PLN00093 137 FLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEV-DAVIGADGA 197 (450)
T ss_pred HHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEe-CEEEEcCCc
Confidence 3443333457888765 5777765432223335666532 144567888 577777775
No 247
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=31.28 E-value=2.8e+02 Score=22.35 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=36.9
Q ss_pred hHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc----CCC---cEEEEEeCcEEEEccC
Q psy17300 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN----PQG---KTIKVNANREVVLAAN 63 (152)
Q Consensus 7 ~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~----~~g---~~~~~~a~k~VIlaaG 63 (152)
.+..+. .++.+|+..+.|+-+.+.+ +.++.||...- ..| -+..+++ |.||=|+|
T Consensus 102 L~s~a~-~aGakifn~~~vEDvi~r~-~~rV~GvViNWt~V~~~glHvDPl~i~a-k~ViDaTG 162 (230)
T PF01946_consen 102 LASKAI-DAGAKIFNLTSVEDVIVRE-DDRVAGVVINWTPVEMAGLHVDPLTIRA-KVVIDATG 162 (230)
T ss_dssp HHHHHH-TTTEEEEETEEEEEEEEEC-SCEEEEEEEEEHHHHTT--T-B-EEEEE-SEEEE---
T ss_pred HHHHHh-cCCCEEEeeeeeeeeEEEc-CCeEEEEEEEehHHhHhhcCCCcceEEE-eEEEeCCC
Confidence 333444 4899999999999999885 48999998763 222 2467888 67777665
No 248
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=31.15 E-value=1.6e+02 Score=24.11 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=37.0
Q ss_pred hHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCC
Q psy17300 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 76 (152)
Q Consensus 7 ~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgi 76 (152)
.+.......++++++++.|.++. ++ .|.+. +|. ++.+ ..||+|.|...++ +|..+|+
T Consensus 196 ~~~~~l~~~gV~v~~~~~v~~i~----~~---~v~~~--~g~--~i~~-D~vi~a~G~~p~~-~l~~~gl 252 (364)
T TIGR03169 196 LVLRLLARRGIEVHEGAPVTRGP----DG---ALILA--DGR--TLPA-DAILWATGARAPP-WLAESGL 252 (364)
T ss_pred HHHHHHHHCCCEEEeCCeeEEEc----CC---eEEeC--CCC--EEec-CEEEEccCCChhh-HHHHcCC
Confidence 33444456789999999998873 22 34443 453 4666 6999999976554 5555654
No 249
>PTZ00052 thioredoxin reductase; Provisional
Probab=30.30 E-value=2e+02 Score=25.24 Aligned_cols=58 Identities=14% Similarity=0.040 Sum_probs=38.7
Q ss_pred hHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 7 ~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
.+.....+.++++++++.|.++.-. ++. ..|.+. +|++ +.+ ..|++|.|..-+..+|.
T Consensus 227 ~l~~~l~~~GV~i~~~~~v~~v~~~--~~~-~~v~~~--~g~~--i~~-D~vl~a~G~~pn~~~l~ 284 (499)
T PTZ00052 227 KVVEYMKEQGTLFLEGVVPINIEKM--DDK-IKVLFS--DGTT--ELF-DTVLYATGRKPDIKGLN 284 (499)
T ss_pred HHHHHHHHcCCEEEcCCeEEEEEEc--CCe-EEEEEC--CCCE--EEc-CEEEEeeCCCCCccccC
Confidence 3334344668999999999998644 222 234443 4543 556 69999999988877763
No 250
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=29.84 E-value=93 Score=25.83 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=25.9
Q ss_pred CCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhh
Q psy17300 33 TKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQ 73 (152)
Q Consensus 33 ~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~ 73 (152)
++.+|.|+.|+...+.+. +.|.+|-|.+.||.=+..
T Consensus 234 ng~~i~g~ly~y~~~~~v-----~i~c~chg~~~~~~efv~ 269 (284)
T PF07897_consen 234 NGKRIEGFLYKYGKGEEV-----RIVCVCHGSFLSPAEFVK 269 (284)
T ss_pred CCceeeEEEEEecCCCeE-----EEEEEecCCCCCHHHHHH
Confidence 367899999884334333 578899999999975543
No 251
>PLN02697 lycopene epsilon cyclase
Probab=28.98 E-value=2e+02 Score=25.85 Aligned_cols=50 Identities=22% Similarity=0.247 Sum_probs=30.8
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
..++++ .++.|++|..+ ++.+..+.+. +| ..++| +.||.|.|+ .|.+++.
T Consensus 204 ~~GV~~-~~~~V~~I~~~--~~~~~vv~~~--dG--~~i~A-~lVI~AdG~-~S~rl~~ 253 (529)
T PLN02697 204 ESGVSY-LSSKVDRITEA--SDGLRLVACE--DG--RVIPC-RLATVASGA-ASGRLLQ 253 (529)
T ss_pred hcCCEE-EeeEEEEEEEc--CCcEEEEEEc--CC--cEEEC-CEEEECCCc-Chhhhhc
Confidence 457777 67899998765 3333333332 44 34777 688888887 4445443
No 252
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=28.53 E-value=2e+02 Score=26.27 Aligned_cols=62 Identities=15% Similarity=0.229 Sum_probs=39.0
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc----C---------CCcEEEEEeCcEEEEccCCccChHHHhhCCC
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN----P---------QGKTIKVNANREVVLAANSINSVRILQQSGV 76 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~----~---------~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgi 76 (152)
..++++..++.+.+|.-++++..+..+.+.+ . +|.+..+.+ ..||+|.|..-.+.++...|+
T Consensus 373 ~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~-D~VI~AiG~~p~~~ll~~~gl 447 (652)
T PRK12814 373 AEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQA-DTVISAIGQQVDPPIAEAAGI 447 (652)
T ss_pred HcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEEC-CEEEECCCCcCCcccccccCc
Confidence 4579999999998886542111233333321 1 244567888 599999998766666654544
No 253
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=28.12 E-value=2.2e+02 Score=24.22 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=34.9
Q ss_pred hhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 10 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 10 ~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
......++++++++.|++|.-+ +.. +.+. .++. .+.+ ..||+|.|..-+...|
T Consensus 206 ~~l~~~GI~i~~~~~V~~i~~~--~~~---v~v~-~~g~--~i~~-D~viva~G~~p~~~~l 258 (438)
T PRK07251 206 QYMEEDGITFLLNAHTTEVKND--GDQ---VLVV-TEDE--TYRF-DALLYATGRKPNTEPL 258 (438)
T ss_pred HHHHHcCCEEEcCCEEEEEEec--CCE---EEEE-ECCe--EEEc-CEEEEeeCCCCCcccC
Confidence 3334668999999999998654 333 2233 2343 4667 6999999987665443
No 254
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=27.87 E-value=1.9e+02 Score=24.25 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=29.3
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccCh
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP 68 (152)
+.+..++.++.++.+.-.+ + ....|.+. .+|+...+++ + +|++|-.++|.
T Consensus 115 ~~g~~~~~~~~~v~~~~~~-~-~~~~V~~~-~~g~~~~i~a-d-lvIGADG~~S~ 164 (390)
T TIGR02360 115 AAGLTTVYDADDVRLHDLA-G-DRPYVTFE-RDGERHRLDC-D-FIAGCDGFHGV 164 (390)
T ss_pred hcCCeEEEeeeeEEEEecC-C-CccEEEEE-ECCeEEEEEe-C-EEEECCCCchh
Confidence 3467888888877764322 2 22356664 3566667888 4 45555555553
No 255
>PTZ00058 glutathione reductase; Provisional
Probab=27.38 E-value=1.5e+02 Score=26.66 Aligned_cols=61 Identities=10% Similarity=0.099 Sum_probs=38.2
Q ss_pred hhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCC
Q psy17300 10 AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 76 (152)
Q Consensus 10 ~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgi 76 (152)
....+.++++++++.|.+|.-++ ++ ++.+.-.++. ..+.+ ..|++|.|..-+...|.+.++
T Consensus 286 ~~L~~~GV~i~~~~~V~~I~~~~-~~---~v~v~~~~~~-~~i~a-D~VlvA~Gr~Pn~~~L~l~~~ 346 (561)
T PTZ00058 286 NDMKKNNINIITHANVEEIEKVK-EK---NLTIYLSDGR-KYEHF-DYVIYCVGRSPNTEDLNLKAL 346 (561)
T ss_pred HHHHHCCCEEEeCCEEEEEEecC-CC---cEEEEECCCC-EEEEC-CEEEECcCCCCCccccCcccc
Confidence 33446789999999999986432 22 2222212222 45777 699999998766666544443
No 256
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=27.33 E-value=3.2e+02 Score=23.25 Aligned_cols=59 Identities=14% Similarity=0.204 Sum_probs=35.0
Q ss_pred hhcCC--CcEEEcCcEEEEEEEeCC--CCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 11 IKDKN--TVQVSKNSEVTKLCFDET--KTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 11 ~~~~~--nl~l~~~~~V~ri~~~~~--~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
+...+ |+++..++.|+.+..++. +....+|.+.-.+|+ +++| +.||-|-|+-.+-|=++
T Consensus 127 ~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~--~i~a-~llVgADG~~S~vR~~~ 189 (437)
T TIGR01989 127 LQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQ--VLYT-KLLIGADGSNSNVRKAA 189 (437)
T ss_pred HHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCC--EEEe-eEEEEecCCCChhHHHc
Confidence 33445 799999999999976410 011123333323553 5778 57777777765555444
No 257
>PTZ00367 squalene epoxidase; Provisional
Probab=26.80 E-value=2.7e+02 Score=25.18 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=35.2
Q ss_pred cCCCcEEEcCcEEEEEEEeCCC--CeEEEEEEEcCCC---------------------cEEEEEeCcEEEEccCCccChH
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETK--TKVTGVEFRNPQG---------------------KTIKVNANREVVLAANSINSVR 69 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~--~~~~gV~~~~~~g---------------------~~~~~~a~k~VIlaaGai~tP~ 69 (152)
..+|++++ ++.|+.++.+..+ .++.||.+...++ ...+++| +.||.|-|.-..-|
T Consensus 145 ~~~~V~v~-~~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~A-dLvVgADG~~S~vR 222 (567)
T PTZ00367 145 CQDNVTML-EGTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATA-PLVVMCDGGMSKFK 222 (567)
T ss_pred cCCCcEEE-EeEEEEeccccCccCCeeEEEEEecCCcccccccccccccccccccccccceEEEe-CEEEECCCcchHHH
Confidence 35789996 5678888765422 4688998874331 1346778 57777777654444
No 258
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=25.93 E-value=2.5e+02 Score=23.06 Aligned_cols=44 Identities=18% Similarity=0.076 Sum_probs=27.5
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCc
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSI 65 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai 65 (152)
..+++++ .+.|..+..+ +.....|.+. +| ..++| +.||.|.|.-
T Consensus 97 ~~gv~~~-~~~v~~i~~~--~~~~~~v~~~--~g--~~~~a-~~VI~A~G~~ 140 (388)
T TIGR01790 97 EGGVLWL-ERKAIHAEAD--GVALSTVYCA--GG--QRIQA-RLVIDARGFG 140 (388)
T ss_pred hcCcEEE-ccEEEEEEec--CCceeEEEeC--CC--CEEEe-CEEEECCCCc
Confidence 3467775 5678877654 2333444443 44 35777 7999999975
No 259
>PRK09897 hypothetical protein; Provisional
Probab=25.66 E-value=2.6e+02 Score=25.13 Aligned_cols=43 Identities=23% Similarity=0.223 Sum_probs=28.2
Q ss_pred cEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCcc
Q psy17300 17 VQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSIN 66 (152)
Q Consensus 17 l~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~ 66 (152)
+++..++.|+.|..++ + ++.+...++. ..+.+ +.||||+|...
T Consensus 124 V~v~~~~~V~~I~~~~--~---g~~V~t~~gg-~~i~a-D~VVLAtGh~~ 166 (534)
T PRK09897 124 VAVYESCQVTDLQITN--A---GVMLATNQDL-PSETF-DLAVIATGHVW 166 (534)
T ss_pred EEEEECCEEEEEEEeC--C---EEEEEECCCC-eEEEc-CEEEECCCCCC
Confidence 6788899999997663 3 2334322322 34666 69999999753
No 260
>KOG2820|consensus
Probab=25.64 E-value=1.7e+02 Score=25.35 Aligned_cols=51 Identities=12% Similarity=0.174 Sum_probs=35.5
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccCh
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP 68 (152)
..-+..++.+..|.-+.+.++.+...+|... +|. ++.| +.+|+++|+--+.
T Consensus 164 ~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt--~gs--~Y~a-kkiI~t~GaWi~k 214 (399)
T KOG2820|consen 164 RELGVIFRDGEKVKFIKFVDEEGNHVSVQTT--DGS--IYHA-KKIIFTVGAWINK 214 (399)
T ss_pred HHcCeEEecCcceeeEeeccCCCceeEEEec--cCC--eeec-ceEEEEecHHHHh
Confidence 3567889999999998887544444444443 453 3566 7999999986554
No 261
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=25.44 E-value=1.6e+02 Score=25.17 Aligned_cols=39 Identities=26% Similarity=0.305 Sum_probs=26.1
Q ss_pred cEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccC
Q psy17300 17 VQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAAN 63 (152)
Q Consensus 17 l~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaG 63 (152)
.+|.+++.|++|..+. +++ .|.+ .+|. .+.+ +.||+++-
T Consensus 239 ~~i~~~~~V~~I~~~~--~~~-~v~~--~~g~--~~~a-d~VI~a~p 277 (463)
T PRK12416 239 TVVKKGAVTTAVSKQG--DRY-EISF--ANHE--SIQA-DYVVLAAP 277 (463)
T ss_pred ccEEcCCEEEEEEEcC--CEE-EEEE--CCCC--EEEe-CEEEECCC
Confidence 4699999999998763 332 3433 3443 3567 68888774
No 262
>PLN02268 probable polyamine oxidase
Probab=25.39 E-value=1.9e+02 Score=24.34 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=26.2
Q ss_pred CcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEcc
Q psy17300 16 TVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAA 62 (152)
Q Consensus 16 nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaa 62 (152)
+++|.+++.|++|..++ +.+ .|.+ .+|+ .+.+ +.||+|.
T Consensus 210 ~~~i~~~~~V~~i~~~~--~~v-~v~~--~~g~--~~~a-d~VIva~ 248 (435)
T PLN02268 210 GLDIRLNHRVTKIVRRY--NGV-KVTV--EDGT--TFVA-DAAIIAV 248 (435)
T ss_pred cCceeCCCeeEEEEEcC--CcE-EEEE--CCCc--EEEc-CEEEEec
Confidence 56899999999998763 222 2333 3553 3667 6888885
No 263
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=25.38 E-value=1.3e+02 Score=19.24 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=19.2
Q ss_pred EEEEcCCCcEEEEEeCcEEEEccCC
Q psy17300 40 VEFRNPQGKTIKVNANREVVLAANS 64 (152)
Q Consensus 40 V~~~~~~g~~~~~~a~k~VIlaaGa 64 (152)
|.+.+.+|.++.++|...+++-+|.
T Consensus 36 v~it~~~G~~~~~~aGD~~~~p~G~ 60 (74)
T PF05899_consen 36 VTITDEDGETVTFKAGDAFFLPKGW 60 (74)
T ss_dssp EEEEETTTEEEEEETTEEEEE-TTE
T ss_pred EEEEECCCCEEEEcCCcEEEECCCC
Confidence 4566668889999998888888775
No 264
>PRK07236 hypothetical protein; Provisional
Probab=24.84 E-value=2.9e+02 Score=22.84 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=29.9
Q ss_pred CCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 15 NTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 15 ~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
++.++..++.|+++..+ +..+ .|.+. +|+ ++++ +.||.|-|+=...|-.
T Consensus 111 ~~~~i~~~~~v~~i~~~--~~~v-~v~~~--~g~--~~~a-d~vIgADG~~S~vR~~ 159 (386)
T PRK07236 111 PAERYHLGETLVGFEQD--GDRV-TARFA--DGR--RETA-DLLVGADGGRSTVRAQ 159 (386)
T ss_pred CCcEEEcCCEEEEEEec--CCeE-EEEEC--CCC--EEEe-CEEEECCCCCchHHHH
Confidence 55789999999999766 3333 24443 454 4667 4666665544433333
No 265
>PRK07846 mycothione reductase; Reviewed
Probab=23.82 E-value=2.4e+02 Score=24.27 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=34.7
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHH
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRIL 71 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lL 71 (152)
+.++++++++.|+++..+ ++.+ .|.+ .+|. .+.+ ..|++|.|..-+..+|
T Consensus 218 ~~~v~i~~~~~v~~i~~~--~~~v-~v~~--~~g~--~i~~-D~vl~a~G~~pn~~~l 267 (451)
T PRK07846 218 SKRWDVRLGRNVVGVSQD--GSGV-TLRL--DDGS--TVEA-DVLLVATGRVPNGDLL 267 (451)
T ss_pred hcCeEEEeCCEEEEEEEc--CCEE-EEEE--CCCc--Eeec-CEEEEEECCccCcccc
Confidence 356999999999998654 3322 2333 2443 4667 6999999988877765
No 266
>PRK07588 hypothetical protein; Provisional
Probab=23.01 E-value=3.1e+02 Score=22.67 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=28.7
Q ss_pred CCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccCh
Q psy17300 15 NTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 15 ~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP 68 (152)
++++++.++.|++|..+ ++.++ |.+ .+|.. +++ +.||-|.|. .|.
T Consensus 115 ~~v~i~~~~~v~~i~~~--~~~v~-v~~--~~g~~--~~~-d~vIgADG~-~S~ 159 (391)
T PRK07588 115 GQVETIFDDSIATIDEH--RDGVR-VTF--ERGTP--RDF-DLVIGADGL-HSH 159 (391)
T ss_pred cCeEEEeCCEEeEEEEC--CCeEE-EEE--CCCCE--EEe-CEEEECCCC-Ccc
Confidence 46999999999999766 33332 444 35543 456 566666665 443
No 267
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=22.98 E-value=2.5e+02 Score=23.53 Aligned_cols=43 Identities=14% Similarity=0.266 Sum_probs=29.4
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCcc
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSIN 66 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~ 66 (152)
..+++++.++.|.+|..+ ... |.. .+|. .+.. +.+|+|+|+-.
T Consensus 70 ~~~i~~~~g~~V~~id~~--~~~---v~~--~~g~--~~~y-d~LViATGs~~ 112 (396)
T PRK09754 70 ENNVHLHSGVTIKTLGRD--TRE---LVL--TNGE--SWHW-DQLFIATGAAA 112 (396)
T ss_pred HCCCEEEcCCEEEEEECC--CCE---EEE--CCCC--EEEc-CEEEEccCCCC
Confidence 468899999999988655 222 222 2454 3555 69999999864
No 268
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=22.91 E-value=1.1e+02 Score=26.86 Aligned_cols=59 Identities=22% Similarity=0.307 Sum_probs=36.3
Q ss_pred hhHHhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 6 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 6 ~~l~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
.++..+.+.-..++++++.|++|..+. . +..+.+.+|.+ +.+ ..||+++=+-.-+++|-
T Consensus 216 ~l~~al~~~l~~~i~~~~~V~~i~~~~--~---~~~~~~~~g~~--~~~-D~VI~t~p~~~l~~ll~ 274 (444)
T COG1232 216 SLIEALAEKLEAKIRTGTEVTKIDKKG--A---GKTIVDVGGEK--ITA-DGVISTAPLPELARLLG 274 (444)
T ss_pred HHHHHHHHHhhhceeecceeeEEEEcC--C---ccEEEEcCCce--EEc-ceEEEcCCHHHHHHHcC
Confidence 445555555556699999999998762 1 22222234544 555 58888876666565554
No 269
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=22.80 E-value=3e+02 Score=19.82 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=20.9
Q ss_pred CcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCC
Q psy17300 22 NSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANS 64 (152)
Q Consensus 22 ~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGa 64 (152)
..+|+.|.... +. ..|.. .+|. .+.+ ..||||.|.
T Consensus 121 ~~~V~~i~~~~--~~-~~v~~--~~g~--~~~~-d~VvLa~Gh 155 (156)
T PF13454_consen 121 RAEVVDIRRDD--DG-YRVVT--ADGQ--SIRA-DAVVLATGH 155 (156)
T ss_pred eeEEEEEEEcC--Cc-EEEEE--CCCC--EEEe-CEEEECCCC
Confidence 55788877663 22 12222 4564 3466 699999983
No 270
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=22.65 E-value=2e+02 Score=26.96 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=31.9
Q ss_pred cCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHh
Q psy17300 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQ 72 (152)
Q Consensus 13 ~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl 72 (152)
+..++++++++.|++|..+ ... |.. .+|.+ +.. +.+|||+|+. |..+-
T Consensus 65 ~~~gv~~~~g~~V~~Id~~--~k~---V~~--~~g~~--~~y-D~LVlATGs~--p~~p~ 112 (785)
T TIGR02374 65 EKHGITLYTGETVIQIDTD--QKQ---VIT--DAGRT--LSY-DKLILATGSY--PFILP 112 (785)
T ss_pred HHCCCEEEcCCeEEEEECC--CCE---EEE--CCCcE--eeC-CEEEECCCCC--cCCCC
Confidence 3568999999999998765 322 222 24543 445 6999999974 54443
No 271
>KOG0404|consensus
Probab=22.65 E-value=1.4e+02 Score=24.66 Aligned_cols=52 Identities=13% Similarity=0.233 Sum_probs=37.3
Q ss_pred HhhhcCCCcEEEcCcEEEEEEEeCCCCeEEEEEEEc-CCCcEEEEEeCcEEEEccC
Q psy17300 9 RAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAAN 63 (152)
Q Consensus 9 ~~~~~~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~-~~g~~~~~~a~k~VIlaaG 63 (152)
..+.+.||++++.|+.+....=| ++...++.+++ ..|.+..+.+ +.+..+-|
T Consensus 200 ~ra~~npnI~v~~nt~~~ea~gd--~~~l~~l~ikn~~tge~~dl~v-~GlFf~IG 252 (322)
T KOG0404|consen 200 QRAEKNPNIEVLYNTVAVEALGD--GKLLNGLRIKNVKTGEETDLPV-SGLFFAIG 252 (322)
T ss_pred HHHhcCCCeEEEechhhhhhccC--cccccceEEEecccCccccccc-ceeEEEec
Confidence 34667899999999998876544 66778888886 3566666776 45555544
No 272
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=22.51 E-value=2.3e+02 Score=18.32 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=20.8
Q ss_pred EEEEEEEeCCCCeEEEEEEEcCCCcEEEEEe
Q psy17300 24 EVTKLCFDETKTKVTGVEFRNPQGKTIKVNA 54 (152)
Q Consensus 24 ~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a 54 (152)
.|.+|.+++ ....-|+..+.+|+.+.++-
T Consensus 44 ~v~~ve~~~--~g~yev~~~~~dG~~~ev~v 72 (83)
T PF13670_consen 44 QVREVEFDD--DGCYEVEARDKDGKKVEVYV 72 (83)
T ss_pred ceEEEEEcC--CCEEEEEEEECCCCEEEEEE
Confidence 788998863 33477887778888776653
No 273
>PRK06996 hypothetical protein; Provisional
Probab=22.35 E-value=4.1e+02 Score=22.11 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=30.6
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccCh
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP 68 (152)
..++++..++.|+.+.-+ +..+ -+.+.+.+| ..++++ +.||-|-|...|.
T Consensus 127 ~~g~~~~~~~~v~~~~~~--~~~v-~v~~~~~~g-~~~i~a-~lvIgADG~~~s~ 176 (398)
T PRK06996 127 GTPVRWLTSTTAHAPAQD--ADGV-TLALGTPQG-ARTLRA-RIAVQAEGGLFHD 176 (398)
T ss_pred hCCCEEEcCCeeeeeeec--CCeE-EEEECCCCc-ceEEee-eEEEECCCCCchH
Confidence 346899999999988544 2222 233332223 246888 6888887876444
No 274
>PRK14694 putative mercuric reductase; Provisional
Probab=21.58 E-value=2.5e+02 Score=24.22 Aligned_cols=51 Identities=10% Similarity=0.083 Sum_probs=29.2
Q ss_pred CCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccChHHHhhCCC
Q psy17300 15 NTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGV 76 (152)
Q Consensus 15 ~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP~lLl~Sgi 76 (152)
++++++... |+.+.. . ...|... +|...++++ +.+|+|.|+ .|+.+-..|+
T Consensus 110 ~~v~~~~g~-v~~id~----~-~~~V~~~--~g~~~~~~~-d~lViATGs--~p~~p~i~G~ 160 (468)
T PRK14694 110 AAITVLNGE-ARFVDE----R-TLTVTLN--DGGEQTVHF-DRAFIGTGA--RPAEPPVPGL 160 (468)
T ss_pred CCeEEEEEE-EEEecC----C-EEEEEec--CCCeEEEEC-CEEEEeCCC--CCCCCCCCCC
Confidence 466666653 555521 1 1233333 454456777 699999998 5555544443
No 275
>PRK05868 hypothetical protein; Validated
Probab=20.22 E-value=4.1e+02 Score=22.08 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=28.1
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccCh
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP 68 (152)
.++++++.++.|+.+..+ ++.+ .|.+. +|. ++++ +.| ++|-.++|.
T Consensus 116 ~~~v~i~~~~~v~~i~~~--~~~v-~v~~~--dg~--~~~a-dlv-IgADG~~S~ 161 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDD--GDSV-RVTFE--RAA--AREF-DLV-IGADGLHSN 161 (372)
T ss_pred cCCcEEEeCCEEEEEEec--CCeE-EEEEC--CCC--eEEe-CEE-EECCCCCch
Confidence 467999999999998654 3332 35554 454 3556 344 445555554
No 276
>PLN02463 lycopene beta cyclase
Probab=20.07 E-value=4.2e+02 Score=23.06 Aligned_cols=45 Identities=29% Similarity=0.319 Sum_probs=29.4
Q ss_pred CCCcEEEcCcEEEEEEEeCCCCeEEEEEEEcCCCcEEEEEeCcEEEEccCCccCh
Q psy17300 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINSV 68 (152)
Q Consensus 14 ~~nl~l~~~~~V~ri~~~~~~~~~~gV~~~~~~g~~~~~~a~k~VIlaaGai~tP 68 (152)
..++++. .+.|++|..++ +. ..|.+. +|. .++| +.||.|.|. +++
T Consensus 126 ~~GV~~~-~~~V~~I~~~~--~~-~~V~~~--dG~--~i~A-~lVI~AdG~-~s~ 170 (447)
T PLN02463 126 ANGVQFH-QAKVKKVVHEE--SK-SLVVCD--DGV--KIQA-SLVLDATGF-SRC 170 (447)
T ss_pred hcCCEEE-eeEEEEEEEcC--Ce-EEEEEC--CCC--EEEc-CEEEECcCC-CcC
Confidence 4578875 57899987653 22 345553 453 5777 799999986 443
Done!