RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17300
(152 letters)
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 121 bits (305), Expect = 5e-33
Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 11/141 (7%)
Query: 4 SSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAAN 63
S FL N + + +L +E GV G + A+REV+L+
Sbjct: 209 SGSFLFVKNKPN-ITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQG 267
Query: 64 SINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSYTI 123
+ ++L SG+G LS++ I + + VG+ L HP K +
Sbjct: 268 VFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHPG-VPFVLR-VKDGFGMDDV 325
Query: 124 N--------EIIYEYLTQRTG 136
++ Y R+G
Sbjct: 326 LLRHGPKRDAVVSAYNKNRSG 346
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 113 bits (285), Expect = 2e-30
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKV-----TGVEFRNPQGKTIKVNANREVVLA 61
+LR + + + V N++VTKL T + + T V A +EVVL+
Sbjct: 213 YLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQE-GAPTTTVCAKKEVVLS 271
Query: 62 ANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGL-----SYTFTKT 116
A S+ + +LQ SG+GD LS I + N P VG+ LS H + + TF
Sbjct: 272 AGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLLPAAFFVNSNQTFDNI 331
Query: 117 PVSSYTINEIIYEYLTQRTG 136
S N + ++ RTG
Sbjct: 332 FRDSSEFNVDLDQWTNTRTG 351
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 112 bits (283), Expect = 5e-30
Identities = 33/123 (26%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 3 ASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEF-RNPQGKTIKVNANREVVLA 61
+S ++ I ++ + +L FD + + TGV+ + G T ++ A EVVL+
Sbjct: 210 SSVSYIHPIVEQENFTLLTGLRARQLVFDADR-RCTGVDIVDSAFGHTHRLTARNEVVLS 268
Query: 62 ANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
+I++ ++L SG+G AA L+++ I ++ + PGVG+ L HP + + K P+ +
Sbjct: 269 TGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGV-VQFE-AKQPMVAE 326
Query: 122 TIN 124
+
Sbjct: 327 STQ 329
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 110 bits (277), Expect = 4e-29
Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 12/139 (8%)
Query: 7 FLRAIKD-KNTVQVSKNSEVTKLCFDETK--TKVTGVEFRNPQGKTIKVNANREVVLAAN 63
+L N +++ V K+ F +T + GV F + V A EV+LAA
Sbjct: 236 WLLPNYQRSN-LEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAG 294
Query: 64 SINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSY------TFTKTP 117
S S IL+ SG+G ++L + N+ + +LP VG + +S
Sbjct: 295 SAISPLILEYSGIGLKSVLDQANVTQLLDLP-VGINMQDQTT-TTVSSRASSAGAGQGQA 352
Query: 118 VSSYTINEIIYEYLTQRTG 136
V E +Y Q
Sbjct: 353 VFFANFTETFGDYAPQARD 371
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 109 bits (274), Expect = 7e-29
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 3 ASSIFLRAIKDKNTVQVSKNSEVTKLCFDE-TKTKVTGVEFR--NPQGKTIKVNANREVV 59
A+ L N ++V ++ V K+ F TGV +R N V + EV+
Sbjct: 196 AADELLNKGNSNN-LRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVI 254
Query: 60 LAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVS 119
++A +I + ++L SGVG + LS NIP+V + P VG+ L +P F ++ P+
Sbjct: 255 VSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNF-INIL-PPNPIE 312
Query: 120 SYTI 123
+
Sbjct: 313 PTIV 316
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 106 bits (267), Expect = 7e-28
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 12/139 (8%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKT--KVTGVEFRNPQGKTIKVNANREVVLAANS 64
+L + +QV V K+ + T + GVEF +G T V A EV+LAA S
Sbjct: 232 WLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGS 291
Query: 65 INSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY--- 121
S IL+ SG+G ++L I V +LP VG L + + +
Sbjct: 292 AVSPTILEYSGIGMKSILEPLGIDTVVDLP-VGLNLQDQTT-ATVRSR-ITSAGAGQGQA 348
Query: 122 ----TINEIIYEYLTQRTG 136
T NE +Y +
Sbjct: 349 AWFATFNETFGDYSEKAHE 367
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 105 bits (264), Expect = 2e-27
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 3 ASSIFLR-AIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLA 61
A+ +L A++ + + + S V +L + + V +E + + +V A ++VL
Sbjct: 211 AADAWLTKAVRGRKNLTILTGSRVRRLKLEGNQ--VRSLEVVG-RQGSAEVFA-DQIVLC 266
Query: 62 ANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTK-TPVSS 120
A ++ S +L +SG+G +L + + ++P +G+ L H + G Y K P S
Sbjct: 267 AGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAARKPVPPSR 326
Query: 121 YTINE 125
+E
Sbjct: 327 LQHSE 331
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 103 bits (258), Expect = 1e-26
Identities = 26/151 (17%), Positives = 52/151 (34%), Gaps = 25/151 (16%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP---QGKTIKVNANREVVLAAN 63
+L+ + N V+ + + ++ + GV+ +P I V V+L+A
Sbjct: 201 YLQTALARPNFTFKTNVMVSNVVRNGSQ--ILGVQTNDPTLGPNGFIPVTPKGRVILSAG 258
Query: 64 SINSVRILQQSGVGDAALLSKYNIPLVKNLP----------GVGKRLSLHPMFFGLSYTF 113
+ + RIL QSG+G ++ VG +P L +T
Sbjct: 259 AFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSIN-LVFT- 316
Query: 114 TKTPVSSYTINE--------IIYEYLTQRTG 136
+ + + +YL ++G
Sbjct: 317 HPSIDAYENWADVWSNPRPADAAQYLANQSG 347
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 67.6 bits (164), Expect = 4e-14
Identities = 14/96 (14%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 14 KNTVQVSKNSEVTKLCFDETKTKVTGVEFRN-PQGKTIKVNANREVVLAANSINSVRILQ 72
+ + ++ + +++ + + G ++ A VL A ++++ ++L
Sbjct: 272 EERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKA-DVYVLTAGAVHNTQLLV 330
Query: 73 QSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFG 108
SG G + N + LP +G ++ + F
Sbjct: 331 NSGFGQLGRPNPAN--PPELLPSLGSYITEQSLVFC 364
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 46.2 bits (109), Expect = 1e-06
Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 11/117 (9%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT--IKVNANREVVLAANS 64
+L A V + +V + + VE ++ GK K + R + L A S
Sbjct: 227 YLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGS 286
Query: 65 INSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
+ S +L + ++ L VG + P ++
Sbjct: 287 LGSTELL---------VRARDTGTLPNLNSEVGAGWGPNGNIMTARANHMWNPTGAH 334
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 45.1 bits (107), Expect = 2e-06
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 14/91 (15%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSIN 66
+A K++ + NS V KL ++ V G + A + VVLA
Sbjct: 256 LRKAAKEQG-IDTRLNSRVVKLVVND-DHSVVGAVVHGKHTGYYMIGA-KSVVLATGGY- 311
Query: 67 SVRILQQSGVGDAALLSKYNIPLVKNLPGVG 97
+ +++ Y P +K++
Sbjct: 312 ---------GMNKEMIAYYR-PTMKDMTSSN 332
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 44.4 bits (104), Expect = 4e-06
Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 12/112 (10%)
Query: 9 RAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTI--KVNANREVVLAANSIN 66
+A + ++ VTK+ +E + QG + KV V AA S+
Sbjct: 235 QAAATGK-LTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVG 293
Query: 67 SVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPV 118
+ ++L + K L VG+ +
Sbjct: 294 TSKLL---------VSMKAQGHLPNLSSQVGEGWGNNGNIMVGRANHMWDAT 336
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 41.9 bits (99), Expect = 3e-05
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 14/91 (15%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSIN 66
+ + V+ + V L D+ +V G+ + GK + V A R VVLA S
Sbjct: 208 LVETAEKLG-VRAEYDMRVQTLVTDD-TGRVVGIVAKQY-GKEVAVRARRGVVLATGSF- 263
Query: 67 SVRILQQSGVGDAALLSKYNIPLVKNLPGVG 97
+ ++ + P + PG
Sbjct: 264 ---------AYNDKMIEAHA-PRLIGRPGAA 284
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 41.6 bits (98), Expect = 3e-05
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 15/88 (17%)
Query: 8 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 67
L K + + N+ ++ D+ K V G+ + V A+ V+LA
Sbjct: 261 LYDNAVKRNIDLRMNTRGIEVLKDD-KGTVKGILVKGMYKGYYWVKADA-VILATG---- 314
Query: 68 VRILQQSGVG-DAALLSKYNIPLVKNLP 94
G + ++K + P +K
Sbjct: 315 -------GFAKNNERVAKLD-PSLKGFI 334
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 40.9 bits (96), Expect = 6e-05
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 15/88 (17%)
Query: 8 LRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSINS 67
L K + NS V ++ D KVTGV + + A+ VV+AA
Sbjct: 261 LWDNAVKRGTDIRLNSRVVRILEDA-SGKVTGVLVKGEYTGYYVIKADA-VVIAAG---- 314
Query: 68 VRILQQSGVG-DAALLSKYNIPLVKNLP 94
G + +SKY+ P +K
Sbjct: 315 -------GFAKNNERVSKYD-PKLKGFK 334
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.035
Identities = 24/134 (17%), Positives = 45/134 (33%), Gaps = 35/134 (26%)
Query: 2 IASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLA 61
A ++ RA D + S + + + + F +GK I RE
Sbjct: 1641 AAQDVWNRA--DNHFKDTYGFS-ILDIVINNPVNLT--IHFGGEKGKRI-----RE---- 1686
Query: 62 ANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSLHPMFFG----LSYT-FTKT 116
N ++ ++ V D L ++ K + + + + F LS T FT+
Sbjct: 1687 ----NYSAMIFETIV-DGKLKTE------KIFKEINEHSTSY-TFRSEKGLLSATQFTQ- 1733
Query: 117 P---VSSYTINEII 127
P + E +
Sbjct: 1734 PALTLMEKAAFEDL 1747
Score = 30.4 bits (68), Expect = 0.21
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 9/64 (14%)
Query: 23 SEVTKLCFDETKTKVTGVEFRNPQG---KTIKVNANREVVLAANSINSVRILQQSGV--G 77
T+ F E T FR+ +G T + L + L+ G+
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGLLSAT----QFTQPALTLMEKAAFEDLKSKGLIPA 1755
Query: 78 DAAL 81
DA
Sbjct: 1756 DATF 1759
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.12
Identities = 21/123 (17%), Positives = 35/123 (28%), Gaps = 40/123 (32%)
Query: 6 IFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAANSI 65
L K + VQ EV ++ + + + E R P T R+ +
Sbjct: 70 TLLS--KQEEMVQKFVE-EVLRINYKFLMSPIK-TEQRQPSMMTRMYIEQRDRLY----- 120
Query: 66 NSVRILQQSGVGDAALLSKYNIP---LVKNL--------PGVGKRLSLHPMF-FGLSYTF 113
D + +KYN+ L P K + + + G
Sbjct: 121 -----------NDNQVFAKYNVSRLQPYLKLRQALLELRP--AKNVLIDGVLGSG----- 162
Query: 114 TKT 116
KT
Sbjct: 163 -KT 164
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 27.6 bits (62), Expect = 1.6
Identities = 7/45 (15%), Positives = 13/45 (28%), Gaps = 5/45 (11%)
Query: 77 GDAALLSKYNIPLVKNLPGVGKRLSLHPMFFGLSYTFTKTPVSSY 121
L ++ + + G S + GL T T +
Sbjct: 340 AMNHLFARKGLNWLAY--GRF---SGFHLMPGLPPNTTDTGSITR 379
>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A
{Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A
Length = 504
Score = 27.2 bits (59), Expect = 2.4
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 45 PQGKTIKVNANREVVLAANSINSVRI 70
+TI V+ E S + + +
Sbjct: 476 ITSETITVDTEFEHTFKPFSCSVIEV 501
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein,
redox-active center, oxidoreductase, D oxidoreductase;
HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5
c.3.1.5 PDB: 2whd_A*
Length = 333
Score = 27.1 bits (61), Expect = 2.5
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 3 ASSIFL-RAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQ-GKTIKVNAN 55
AS I RA+ + + V NS V + D + + G++ +N G + +
Sbjct: 196 ASKIMQQRALSNPK-IDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVS 249
>1zru_A Lactophage P2 receptor binding protein; domains: beta barrel, beta
prism, beta barrel, structural structural proteomics in
europe; 1.73A {Lactococcus lactis phage P2} SCOP:
b.21.1.3 b.108.1.4 b.163.1.2 PDB: 2bsd_A 2bse_A 2x53_A
2x54_A 2x5a_A 2wzp_A
Length = 264
Score = 26.7 bits (58), Expect = 3.4
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTI---KVNANREVVLAANSINSVR 69
+ N V ++ S V K+CFD T TGV P +T ++ N V + +
Sbjct: 106 NSNGVDINNGSGVLKVCFDIVTTSGTGVTSTKPIVQTSTLDSISVNDMTVSGSIDVPVQT 165
Query: 70 ILQQSGVGDAALLSKYNIPLV 90
+ ++G G L+K N LV
Sbjct: 166 LTVEAGNGLQLQLTKKNNDLV 186
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding,
helix-turn-helix, gene regulation; NMR {Homo sapiens}
Length = 82
Score = 24.9 bits (54), Expect = 4.9
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 108 GLSYTFTKTPVSSYTINEIIYEYLTQRTGKRRRKFTRKR 146
G Y NE+I Y+ RTGK R TRK+
Sbjct: 28 GRRKIILSDEGKMYGRNELIARYIKLRTGKTR---TRKQ 63
>4f4f_A Threonine synthase; structural genomics, niaid, national institute
of allergy AN infectious diseases; HET: PLP; 1.90A
{Brucella melitensis BV}
Length = 468
Score = 26.1 bits (58), Expect = 5.7
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 61 AANSINSVRILQQ 73
NSIN RI+ Q
Sbjct: 223 GVNSINWARIMPQ 235
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A
{Escherichia coli} SCOP: c.79.1.1
Length = 428
Score = 26.1 bits (58), Expect = 5.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 61 AANSINSVRILQQS 74
+ANSIN R+L Q
Sbjct: 210 SANSINISRLLAQI 223
>2zw2_A Putative uncharacterized protein STS178; purine metabolism,
ligase; 1.55A {Sulfolobus tokodaii}
Length = 92
Score = 24.9 bits (55), Expect = 6.2
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 43 RNPQGKTIKVNANREVVLAANSINSVRI 70
R+P+G+TI+ ++ I R
Sbjct: 19 RDPEGETIQRYVVS---RFSDKIIETRA 43
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, lyase; 1.40A
{Burkholderia thailandensis}
Length = 487
Score = 25.8 bits (57), Expect = 6.8
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 61 AANSINSVRILQQ 73
NSIN R++ Q
Sbjct: 236 TVNSINWARVVAQ 248
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: d.15.1.1
Length = 100
Score = 24.6 bits (53), Expect = 8.7
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 17 VQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANR-EVVLAANSINSVRILQQSG 75
V + + + ET+ +TG E R+ +T + N ++V+ + + L++ G
Sbjct: 20 VFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQG 79
Query: 76 VG 77
V
Sbjct: 80 VA 81
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate,
beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces
cerevisiae} SCOP: c.79.1.1
Length = 514
Score = 25.4 bits (56), Expect = 8.8
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 61 AANSINSVRILQQ 73
A NSIN RIL Q
Sbjct: 238 AVNSINWARILAQ 250
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.365
Gapped
Lambda K H
0.267 0.0745 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,163,741
Number of extensions: 119307
Number of successful extensions: 267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 37
Length of query: 152
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 67
Effective length of database: 4,328,508
Effective search space: 290010036
Effective search space used: 290010036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)