RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17300
(152 letters)
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
niger [TaxId: 5061]}
Length = 385
Score = 94.9 bits (235), Expect = 2e-24
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Query: 1 MIASSIFLRAIKDKNTVQVSKNSEVTKLCFDE--TKTKVTGVEFRNPQGKTIKVNANREV 58
A+ +L + +QV V K+ + T + GVEF +G T V A EV
Sbjct: 224 SDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEV 283
Query: 59 VLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLP-GVGKRLSLHPM 105
+LAA S S IL+ SG+G ++L I V +LP G+ +
Sbjct: 284 LLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLCSMMPKEMG 331
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
(Prunus dulcis) [TaxId: 3755]}
Length = 351
Score = 86.1 bits (212), Expect = 2e-21
Identities = 22/74 (29%), Positives = 35/74 (47%)
Query: 43 RNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSL 102
N V + EV+++A +I + ++L SGVG + LS NIP+V + P VG+ L
Sbjct: 238 SNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQCLVG 297
Query: 103 HPMFFGLSYTFTKT 116
+ T
Sbjct: 298 KVLDGDFRVTGINA 311
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 391
Score = 79.6 bits (195), Expect = 6e-19
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 22 NSEVTKLCFDETK--TKVTGVEFRNPQGKTIKVNANREVVLAANSINSVRILQQSGVGDA 79
V K+ F +T + GV F + V A EV+LAA S S IL+ SG+G
Sbjct: 251 GQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLK 310
Query: 80 ALLSKYNIPLVKNLP-GVGKRLSLHP 104
++L + N+ + +LP G+ +S
Sbjct: 311 SVLDQANVTQLLDLPVGICSMMSREL 336
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
flavocytochrome cellobiose dehydrogenase (CDH),
FAD-binding domain {Fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 360
Score = 69.7 bits (169), Expect = 2e-15
Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
Query: 9 RAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQG---KTIKVNANREVVLAANSI 65
+ + N V+ + + ++ + GV+ +P I V V+L+A +
Sbjct: 198 QTALARPNFTFKTNVMVSNVVRNGSQ--ILGVQTNDPTLGPNGFIPVTPKGRVILSAGAF 255
Query: 66 NSVRILQQSGVGDAALLSKYNIPLVKNLPGVGKRLSL-HPM 105
+ RIL QSG+G ++ + + P+
Sbjct: 256 GTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPV 296
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
fungus (Peniophora sp. SG) [TaxId: 204723]}
Length = 379
Score = 54.2 bits (129), Expect = 5e-10
Identities = 10/94 (10%), Positives = 30/94 (31%), Gaps = 1/94 (1%)
Query: 3 ASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIKVNANREVVLAA 62
+ ++ + ++ + +++ + + VL A
Sbjct: 220 LQNRPNTDAPEERF-NLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTA 278
Query: 63 NSINSVRILQQSGVGDAALLSKYNIPLVKNLPGV 96
++++ ++L SG G + N P + G
Sbjct: 279 GAVHNTQLLVNSGFGQLGRPNPTNPPELLPSLGS 312
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC
family {Streptomyces sp. [TaxId: 1931]}
Length = 367
Score = 53.1 bits (126), Expect = 1e-09
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 3 ASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKT--IKVNANREVVL 60
+L A V + +V + + VE ++ GK K + R + L
Sbjct: 220 LDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFL 279
Query: 61 AANSINSVRILQQSG 75
A S+ S +L ++
Sbjct: 280 GAGSLGSTELLVRAR 294
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC
family {Brevibacterium sterolicum [TaxId: 1702]}
Length = 370
Score = 53.0 bits (126), Expect = 1e-09
Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 8/104 (7%)
Query: 3 ASSIFLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTI--KVNANREVVL 60
+L + ++ VTK+ +E + QG + KV V
Sbjct: 224 LDKTYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFF 283
Query: 61 AANSINSVRILQQSG-VGDAALLSK-----YNIPLVKNLPGVGK 98
AA S+ + ++L G LS + + L K G+
Sbjct: 284 AAGSVGTSKLLVSMKAQGHLPNLSSQVGEGWGVLLNKATDNFGR 327
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 297
Score = 29.8 bits (65), Expect = 0.10
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 7 FLRAIKDKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNPQGKTIK 51
F R ++ + ++ + + K GV+ + T K
Sbjct: 242 FARLSAIYG-GTYMLDTPIDEVLYKKDTGKFEGVK---TKLGTFK 282
>d1zrua3 b.163.1.2 (A:2-140) Receptor binding protein, rbp,
N-terminal domain {Lactococcus lactis phage p2 [TaxId:
100641]}
Length = 139
Score = 25.0 bits (54), Expect = 2.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 13 DKNTVQVSKNSEVTKLCFDETKTKVTGVEFRNP 45
+ N V ++ S V K+CFD T TGV P
Sbjct: 105 NSNGVDINNGSGVLKVCFDIVTTSGTGVTSTKP 137
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.365
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 514,265
Number of extensions: 21762
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 10
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.3 bits)