BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17302
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 11/161 (6%)
Query: 32 GSQDSYAQLHKWNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGA-LRLRYN 90
G++ + + KWNA + + KT GL+LY DD G DF E+ L G L+L ++
Sbjct: 5 GAEGQWTRFPKWNACCESEMSFQLKTRSARGLVLYFDDEGFCDFLELILTRGGRLQLSFS 64
Query: 91 LGSG--AQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHVTSNS 148
+ A +LT +NDG WH+VR++R+ T+L +D + + R +T S
Sbjct: 65 IFCAEPATLLT-DTPVNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRR--DMTVFS 121
Query: 149 WVYIGGMPPWYNAKLTLLALPSVIFAGERVPV--WSRHFQL 187
+++GG+PP A L L SV ER P W R ++
Sbjct: 122 GLFVGGLPPELRAAALKLTLASV---REREPFKGWIRDVRV 159
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 16/135 (11%)
Query: 35 DSYAQLHKWNAALNGSLELEFKTEQPNGLILYT-------DDGG-----TYDFFEIKLVE 82
+S+ L KWNA GS+ +F+T +PNGLIL++ D DFF I++++
Sbjct: 430 ESFISLPKWNAKKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLD 489
Query: 83 GALRLRYNLGSGA-QILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRF 141
G L L ++GSG +I + +NDG W+ V +R +++V+ + T+ G+
Sbjct: 490 GHLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSGTISVNTLRTPYTAPGES--- 546
Query: 142 GHVTSNSWVYIGGMP 156
+ + +Y+GG+P
Sbjct: 547 EILDLDDELYLGGLP 561
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 7/109 (6%)
Query: 51 LELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSGA---QILTVGHDLNDG 107
+ L FKT Q NGL+L+T G + D+ + L GA+ L NLGSGA + V ND
Sbjct: 258 ITLSFKTLQRNGLMLHT--GKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDN 315
Query: 108 HWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHVTSNSWVYIGGMP 156
WH V+V R + + +++VD I T +++ + S+ + Y+GG P
Sbjct: 316 AWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTM--LGSDDFFYVGGSP 362
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 13/170 (7%)
Query: 33 SQDSYAQLHKWNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLG 92
++ SY L A + L +FKT +GLILY G DF ++LV+G L ++LG
Sbjct: 853 TKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNSGDGN-DFIVVELVKGYLHYVFDLG 911
Query: 93 SGAQILTVGHD--LNDGHWHSVRVKRRVEKT-SLTVDNITQTRTSRGKEFRFGHVTSNSW 149
+GA ++ + LND WH+V + R ++ +D T+ + G ++ S
Sbjct: 912 NGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGAR----NLDLKSD 967
Query: 150 VYIGGMPPWYNAKLTLLALPSVIFAGERVPVWSRHFQLVGGMPPWYNAKL 199
+YIGG+ AK T +LP ++ A E L G +P + L
Sbjct: 968 LYIGGV-----AKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDAL 1012
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 51 LELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGS---------GAQILTVG 101
+ L F++++ G+++ T + D ++L G ++L NL G + L G
Sbjct: 684 VSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLDCIRINCNSSKGPETLFAG 743
Query: 102 HDLNDGHWHSVRVKRRVEKTSLTVDN 127
++LND WH+VRV RR + LTVD+
Sbjct: 744 YNLNDNEWHTVRVVRRGKSLKLTVDD 769
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 51 LELEFKTEQPNGLILYTDDG-GTYDFFEIKLVEGALRLRYNLGSG-AQILTVGHDLNDGH 108
L + F T Q +++ D G D+ E+ + +G + +++N+G+ I +NDG
Sbjct: 1094 LAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGK 1153
Query: 109 WHSVRVKRRVEKTSLTVDN 127
+H VR R +L VD+
Sbjct: 1154 YHVVRFTRSGGNATLQVDS 1172
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 11/161 (6%)
Query: 32 GSQDSYAQLHKWNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGA-LRLRYN 90
G++ + + KWNA + + KT GL+LY DD G DF E+ L G L+L ++
Sbjct: 5 GAEGQWTRFPKWNACCESEMSFQLKTRSARGLVLYFDDEGFCDFLELILTRGGRLQLSFS 64
Query: 91 LGSG--AQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHVTSNS 148
+ A +LT +NDG WH+VR++R+ T+L +D + + R +T S
Sbjct: 65 IFCAEPATLLT-DTPVNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRR--DMTVFS 121
Query: 149 WVYIGGMPPWYNAKLTLLALPSVIFAGERVPV--WSRHFQL 187
+++GG+PP A L L SV ER P W R ++
Sbjct: 122 GLFVGGLPPELRAAALKLTLASV---REREPFKGWIRDVRV 159
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 16/135 (11%)
Query: 35 DSYAQLHKWNAALNGSLELEFKTEQPNGLILYT-------DDGG-----TYDFFEIKLVE 82
+S+ L KWNA GS+ +F+T +PNGLIL++ D DFF I++++
Sbjct: 430 ESFISLPKWNAKKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLD 489
Query: 83 GALRLRYNLGSGA-QILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRF 141
G L L ++GSG +I + +NDG W+ V +R +++V+ + T+ G+
Sbjct: 490 GHLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSGTISVNTLRTPYTAPGES--- 546
Query: 142 GHVTSNSWVYIGGMP 156
+ + +Y+GG+P
Sbjct: 547 EILDLDDELYLGGLP 561
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 7/109 (6%)
Query: 51 LELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSGA---QILTVGHDLNDG 107
+ L FKT Q NGL+L+T G + D+ + L GA+ L NLGSGA + V ND
Sbjct: 258 ITLSFKTLQRNGLMLHT--GKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDN 315
Query: 108 HWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHVTSNSWVYIGGMP 156
WH V+V R + + +++VD I T +++ + S+ + Y+GG P
Sbjct: 316 AWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTM--LGSDDFFYVGGSP 362
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 13/170 (7%)
Query: 33 SQDSYAQLHKWNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLG 92
++ SY L A + L +FKT +GLILY G DF ++LV+G L ++LG
Sbjct: 844 TKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNSGDGN-DFIVVELVKGYLHYVFDLG 902
Query: 93 SGAQILTVGHD--LNDGHWHSVRVKRRVEKT-SLTVDNITQTRTSRGKEFRFGHVTSNSW 149
+GA ++ + LND WH+V + R ++ +D T+ + G ++ S
Sbjct: 903 NGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGAR----NLDLKSD 958
Query: 150 VYIGGMPPWYNAKLTLLALPSVIFAGERVPVWSRHFQLVGGMPPWYNAKL 199
+YIGG+ AK T +LP ++ A E L G +P + L
Sbjct: 959 LYIGGV-----AKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDAL 1003
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%)
Query: 51 LELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSGAQILTVGHDLNDGHWH 110
+ L F++++ G+++ T + D ++L G ++L NLG G + L G++LND WH
Sbjct: 684 VSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLGKGPETLFAGYNLNDNEWH 743
Query: 111 SVRVKRRVEKTSLTVDN 127
+VRV RR + LTVD+
Sbjct: 744 TVRVVRRGKSLKLTVDD 760
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 51 LELEFKTEQPNGLILYTDDG-GTYDFFEIKLVEGALRLRYNLGSG-AQILTVGHDLNDGH 108
L + F T Q +++ D G D+ E+ + +G + +++N+G+ I +NDG
Sbjct: 1085 LAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGK 1144
Query: 109 WHSVRVKRRVEKTSLTVDN 127
+H VR R +L VD+
Sbjct: 1145 YHVVRFTRSGGNATLQVDS 1163
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 16/135 (11%)
Query: 35 DSYAQLHKWNAALNGSLELEFKTEQPNGLILYT-------DDGG-----TYDFFEIKLVE 82
+S+ L KWNA GS+ +F+T +PNGLIL++ D DFF I++++
Sbjct: 205 ESFISLPKWNAKKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLD 264
Query: 83 GALRLRYNLGSGA-QILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRF 141
G L L ++GSG +I + +NDG W+ V +R +++V+ + T+ G+
Sbjct: 265 GHLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSGTISVNTLRTPYTAPGES--- 321
Query: 142 GHVTSNSWVYIGGMP 156
+ + +Y+GG+P
Sbjct: 322 EILDLDDELYLGGLP 336
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 7/109 (6%)
Query: 51 LELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSGA---QILTVGHDLNDG 107
+ L FKT Q NGL+L+T G + D+ + L GA+ L NLGSGA + V ND
Sbjct: 33 ITLSFKTLQRNGLMLHT--GKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDN 90
Query: 108 HWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHVTSNSWVYIGGMP 156
WH V+V R + + +++VD I T +++ + S+ + Y+GG P
Sbjct: 91 AWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTM--LGSDDFFYVGGSP 137
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 13/170 (7%)
Query: 33 SQDSYAQLHKWNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLG 92
++ SY L A + L +FKT +GLILY G DF ++LV+G L ++LG
Sbjct: 628 TKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNSGDGN-DFIVVELVKGYLHYVFDLG 686
Query: 93 SGAQILTVGHD--LNDGHWHSVRVKRRVEKT-SLTVDNITQTRTSRGKEFRFGHVTSNSW 149
+GA ++ + LND WH+V + R ++ +D T+ + G ++ S
Sbjct: 687 NGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGAR----NLDLKSD 742
Query: 150 VYIGGMPPWYNAKLTLLALPSVIFAGERVPVWSRHFQLVGGMPPWYNAKL 199
+YIGG+ AK T +LP ++ A E L G +P + L
Sbjct: 743 LYIGGV-----AKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDAL 787
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 51 LELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGS---------GAQILTVG 101
+ L F++++ G+++ T + D ++L G ++L NL G + L G
Sbjct: 459 VSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLDCIRINCNSSKGPETLFAG 518
Query: 102 HDLNDGHWHSVRVKRRVEKTSLTVDN 127
++LND WH+VRV RR + LTVD+
Sbjct: 519 YNLNDNEWHTVRVVRRGKSLKLTVDD 544
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 51 LELEFKTEQPNGLILYTDDG-GTYDFFEIKLVEGALRLRYNLGSG-AQILTVGHDLNDGH 108
L + F T Q +++ D G D+ E+ + +G + +++N+G+ I +NDG
Sbjct: 869 LAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGK 928
Query: 109 WHSVRVKRRVEKTSLTVDN 127
+H VR R +L VD+
Sbjct: 929 YHVVRFTRSGGNATLQVDS 947
>pdb|2H0B|A Chain A, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
pdb|2H0B|B Chain B, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
pdb|2H0B|C Chain C, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
pdb|2H0B|D Chain D, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
Length = 184
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 51 LELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSGA---QILTVGHDLNDG 107
+ L FKT Q NGL L+T G + D+ + L GA+ L NLGSGA + V ND
Sbjct: 32 ITLSFKTLQRNGLXLHT--GKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDN 89
Query: 108 HWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHVTSNSWVYIGGMP 156
WH V+V R + + +++VD I T +++ + S+ + Y+GG P
Sbjct: 90 AWHDVKVTRNLRQVTISVDGILTTTGYTQEDYT--XLGSDDFFYVGGSP 136
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6
Length = 410
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 13/170 (7%)
Query: 33 SQDSYAQLHKWNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLG 92
++ SY L A + L +FKT +GLILY G DF ++LV+G L ++LG
Sbjct: 12 TKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNSGDGN-DFIVVELVKGYLHYVFDLG 70
Query: 93 SGAQILTVGHD--LNDGHWHSVRVKRRVEKT-SLTVDNITQTRTSRGKEFRFGHVTSNSW 149
+GA ++ + LND WH+V + R ++ +D T+ + G ++ S
Sbjct: 71 NGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGAR----NLDLKSD 126
Query: 150 VYIGGMPPWYNAKLTLLALPSVIFAGERVPVWSRHFQLVGGMPPWYNAKL 199
+YIGG+ AK T +LP ++ A E L G +P + L
Sbjct: 127 LYIGGV-----AKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDAL 171
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 51 LELEFKTEQPNGLILYTDDG-GTYDFFEIKLVEGALRLRYNLGSG-AQILTVGHDLNDGH 108
L + F T Q +++ D G D+ E+ + +G + +++N+G+ I +NDG
Sbjct: 253 LAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGK 312
Query: 109 WHSVRVKRRVEKTSLTVDN 127
+H VR R +L VD+
Sbjct: 313 YHVVRFTRSGGNATLQVDS 331
>pdb|2R16|A Chain A, Crystal Structure Of Bovine Neurexin 1 Alpha LnsLG DOMAIN
4 (With No Splice Insert)
Length = 182
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%)
Query: 50 SLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSGAQILTVGHDLNDGHW 109
+ L F++++ G+++ T + D ++L G ++L NLG G + L G++LND W
Sbjct: 30 DVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLGKGPETLFAGYNLNDNEW 89
Query: 110 HSVRVKRRVEKTSLTVDN 127
H+VRV RR + LTVD+
Sbjct: 90 HTVRVVRRGKSLKLTVDD 107
>pdb|1DYK|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair
Length = 394
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 50 SLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSGAQILTVGHDLNDGHW 109
++ELE +TE +GL+ Y DF ++L G Y+LGSG + +NDG W
Sbjct: 60 TIELEVRTEAESGLLFYMARINHADFATVQLRNGFPYFSYDLGSGDTSTMIPTKINDGQW 119
Query: 110 HSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHVTSNSWVYIGGMPPWYNAK 162
H +++ R ++ L VD+ + S K V +Y+GG+P Y +
Sbjct: 120 HKIKIVRVKQEGILYVDDASSQTISPKKADILDVV---GILYVGGLPINYTTR 169
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 43 WNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSGAQILTVGH 102
+ L+ +E EF+T +P G++L D I++++ +L +++ +GA T +
Sbjct: 228 FKVGLDLLVEFEFRTTRPTGVLLGVSSQ-KMDGMGIEMIDE--KLMFHVDNGAGRFTAIY 284
Query: 103 D------LNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHVTSNSWVYIGGMP 156
D + +G WH V K+ + L VD ++ +N V++GG P
Sbjct: 285 DAEIPGHMCNGQWHKVTAKKIKNRLELVVDG--NQVDAQSPNSASTSADTNDPVFVGGFP 342
Query: 157 PWYN 160
N
Sbjct: 343 GGLN 346
>pdb|3SH4|A Chain A, Laminin G Like Domain 3 From Human Perlecan
pdb|3SH5|A Chain A, Calcium-Bound Laminin G Like Domain 3 From Human Perlecan
Length = 195
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 50 SLELEFKTEQPNGLILYT-----DDGGTYDFFEIKLVEGALRLRYNLGSGAQILTVGHDL 104
++ELE +T +GL+L+ + G DF + L +G L RY LGSG L +
Sbjct: 33 TIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQLGSGEARLVSEDPI 92
Query: 105 NDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGH-------VTSNSWVYIGGMP 156
NDG WH V R + S+ VD G+E G V + VYIGG P
Sbjct: 93 NDGEWHRVTALREGRRGSIQVD---------GEELVSGRSPGPNVAVNAKGSVYIGGAP 142
>pdb|1OKQ|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair, Ca1 Site Mutant
Length = 394
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 50 SLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSGAQILTVGHDLNDGHW 109
++ELE +TE +GL+ Y F ++L G Y+LGSG + +NDG W
Sbjct: 60 TIELEVRTEAESGLLFYMARINHAAFATVQLRNGFPYFSYDLGSGDTSTMIPTKINDGQW 119
Query: 110 HSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHVTSNSWVYIGGMPPWYNAK 162
H +++ R ++ L VD+ + S K V +Y+GG+P Y +
Sbjct: 120 HKIKIVRVKQEGILYVDDASSQTISPKKADILAVV---GILYVGGLPINYTTR 169
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 43 WNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSGAQILTVGH 102
+ L+ +E EF+T +P G++L D I++++ +L +++ +GA T +
Sbjct: 228 FKVGLDLLVEFEFRTTRPTGVLLGVSSQ-KMDGMGIEMIDE--KLMFHVDNGAGRFTAIY 284
Query: 103 D------LNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHVTSNSWVYIGGMP 156
D + +G WH V K+ + L VD ++ +N V++GG P
Sbjct: 285 DAEIPGHMCNGQWHKVTAKKIKNRLELVVDG--NQVDAQSPNSASTSADTNDPVFVGGFP 342
Query: 157 PWYN 160
N
Sbjct: 343 GGLN 346
>pdb|2WJS|A Chain A, Crystal Structure Of The Lg1-3 Region Of The Laminin
Alpha2 Chain
Length = 608
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Query: 50 SLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSGAQILTVGHDLNDGHW 109
++ +F+T + L++Y DF ++L +G +++ Y+LGSG + + NDG W
Sbjct: 228 TVMFKFRTFSSSALLMYLATRDLKDFMSVELSDGHVKVSYDLGSGMTSVVSNQNHNDGKW 287
Query: 110 HSVRVKRRVEKTSLTVDNITQTR------TSRGKEFRFGHVTSNSWVYIGGMPPWYNAK 162
+ + R ++ ++++ +I + +S G F + ++ +Y GG+P N +
Sbjct: 288 KAFTLSRIQKQANISIVDIDSNQEENVATSSSGNNFGL-DLKADDKIYFGGLPTLRNLR 345
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/116 (18%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 50 SLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSG-AQILTVGHDLNDGH 108
++ + KT + L+ Y DF I++ +G + +++GSG ++ ++D +
Sbjct: 34 NIVVHVKTAVADNLLFYLGSAKFIDFLAIEMRKGKVSFLWDVGSGVGRVEYPDLTIDDSY 93
Query: 109 WHSVRVKRRVEKTSLTVDNITQTRTSRGKE---------FRFGHVTSNSWVYIGGM 155
W+ + R S++V + + S + V +N+ +++GG+
Sbjct: 94 WYRIEASRTGRNGSISVRALDGPKASMVPSTYHSVSPPGYTILDVDANAMLFVGGL 149
>pdb|2JD4|A Chain A, Mouse Laminin Alpha1 Chain, Domains Lg4-5
pdb|2JD4|B Chain B, Mouse Laminin Alpha1 Chain, Domains Lg4-5
Length = 383
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 2/138 (1%)
Query: 25 GHSFMLDGSQDSYAQLHKWNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGA 84
H F L + L + + ++L +T +GLI Y D+ ++L EG
Sbjct: 21 AHQFGLSQNSHLVLPLQQSDVRKRLQVQLSIRTFASSGLIYYVAHQNQMDYATLQLQEGR 80
Query: 85 LRLRYNLGSGAQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHV 144
L ++LG G ++ L+DG WH+V+ + K +TVD Q S + +
Sbjct: 81 LHFMFDLGKGRTKVSHPALLSDGKWHTVKTEYIKRKAFMTVDG--QESPSVTVVGKATTL 138
Query: 145 TSNSWVYIGGMPPWYNAK 162
+Y+GG+P Y A+
Sbjct: 139 DVERKLYLGGLPSHYRAR 156
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 37 YAQLHK--WNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSG 94
YA L K + L+ + LEF+T NG++L D +++V+G + N G+G
Sbjct: 208 YAALVKEGYKVRLDLQITLEFRTTSKNGVLLGISSA-KVDAIGLEIVDGKVLFHVNNGAG 266
Query: 95 AQILT----VGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHVTS---N 147
T L DG WH+++ + + LTVD S E H TS N
Sbjct: 267 RITATYQPRAARALCDGKWHTLQAHKSKHRIVLTVDG-----NSVRAESPHTHSTSADTN 321
Query: 148 SWVYIGGMP 156
+Y+GG P
Sbjct: 322 DPIYVGGYP 330
>pdb|1PZ7|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ7|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
Length = 204
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 51 LELEFKTEQPNGLILYTDDG-GTYDFFEIKLVEGALRLRYNLGSGAQILTVGHDLNDGHW 109
EL KTE GLIL++ G D+ + +V+G +++ Y+LGS +L +N HW
Sbjct: 52 FELSIKTEATQGLILWSGKGLERSDYIALAIVDGFVQMMYDLGSKPVVLRSTVPINTNHW 111
Query: 110 HSVRVKRRVEKTSLTVDN 127
++ R + SL V N
Sbjct: 112 THIKAYRVQREGSLQVGN 129
>pdb|1PZ8|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|C Chain C, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|D Chain D, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ9|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ9|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
Length = 201
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 51 LELEFKTEQPNGLILYTDDG-GTYDFFEIKLVEGALRLRYNLGSGAQILTVGHDLNDGHW 109
EL KTE GLIL++ G D+ + +V+G +++ Y+LGS +L +N HW
Sbjct: 49 FELSIKTEATQGLILWSGKGLERSDYIALAIVDGFVQMMYDLGSKPVVLRSTVPINTNHW 108
Query: 110 HSVRVKRRVEKTSLTVDN 127
++ R + SL V N
Sbjct: 109 THIKAYRVQREGSLQVGN 126
>pdb|1Q56|A Chain A, Nmr Structure Of The B0 Isoform Of The Agrin G3 Domain In
Its Ca2+ Bound State
Length = 195
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 51 LELEFKTEQPNGLILYTDDG-GTYDFFEIKLVEGALRLRYNLGSGAQILTVGHDLNDGHW 109
EL KTE GLIL++ G D+ + +V+G +++ Y+LGS +L +N HW
Sbjct: 43 FELSIKTEATQGLILWSGKGLERSDYIALAIVDGFVQMMYDLGSKPVVLRSTVPINTNHW 102
Query: 110 HSVRVKRRVEKTSLTVDN 127
++ R + SL V N
Sbjct: 103 THIKAYRVQREGSLQVGN 120
>pdb|3V64|A Chain A, Crystal Structure Of Agrin And Lrp4
pdb|3V64|B Chain B, Crystal Structure Of Agrin And Lrp4
pdb|3V65|A Chain A, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|C Chain C, Crystal Structure Of Agrin And Lrp4 Complex
Length = 191
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 52 ELEFKTEQPNGLILYTDDGGT-YDFFEIKLVEGALRLRYNLGSGAQILTVGHDLNDGHWH 110
EL +TE GL+L+ D+ + +V+G L+L Y+LGS +L +N W
Sbjct: 40 ELSLRTEATQGLVLWIGKAAERADYMALAIVDGHLQLSYDLGSQPVVLRSTVKVNTNRWL 99
Query: 111 SVRVKRRVEKTSLTVDN 127
+R R + SL V N
Sbjct: 100 RIRAHREHREGSLQVGN 116
>pdb|3PVE|A Chain A, Crystal Structure Of The G2 Domain Of Agrin From Mus
Musculus
pdb|3PVE|B Chain B, Crystal Structure Of The G2 Domain Of Agrin From Mus
Musculus
Length = 189
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 28 FMLDGSQDSYAQL---HKWNAALNGSLELE--FKTEQPNGLILYTDD--GGTYDFFEIKL 80
F+ D + SY +L H + L + LE F P+GL+LY G DF + L
Sbjct: 10 FLADFNGFSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKTDGKGDFVSLAL 69
Query: 81 VEGALRLRYNLGSGAQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDN 127
L RY+LG GA I+ + G W V ++R K +L V +
Sbjct: 70 HNRHLEFRYDLGKGAAIIRSKEPIALGTWVRVFLERNGRKGALQVGD 116
>pdb|1F5F|A Chain A, Crystal Structure Of The N-Terminal G-Domain Of Shbg In
Complex With Zinc
Length = 205
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%)
Query: 50 SLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSGAQILTVGHDLNDGHW 109
S E +T P G+I Y D D+F + L +G ++ + + G L+DG W
Sbjct: 41 SSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRW 100
Query: 110 HSVRVKRRVEKTSLTVD 126
H V VK + L VD
Sbjct: 101 HQVEVKMEGDSVLLEVD 117
>pdb|1LHN|A Chain A, Crystal Structure Of The N-Terminal Lg-Domain Of Shbg In
Complex With 5alpha-Androstane-3beta,17alpha-Diol
pdb|1LHO|A Chain A, Crystal Structure Of The N-terminal Lg-domain Of Shbg In
Complex With 5alpha-androstane-3beta,17beta-diol
pdb|1LHU|A Chain A, Crystal Structure Of The N-Terminal Lg-Domain Of Shbg In
Complex With Estradiol
pdb|1LHV|A Chain A, Crystal Structure Of The N-terminal Lg-domain Of Shbg In
Complex With Norgestrel
pdb|1LHW|A Chain A, Crystal Structure Of The N-Terminal Lg-Domain Of Shbg In
Complex With 2-Methoxyestradiol
Length = 189
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%)
Query: 50 SLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSGAQILTVGHDLNDGHW 109
S E +T P G+I Y D D+F + L +G ++ + + G L+DG W
Sbjct: 41 SSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRW 100
Query: 110 HSVRVKRRVEKTSLTVD 126
H V VK + L VD
Sbjct: 101 HQVEVKMEGDSVLLEVD 117
>pdb|1D2S|A Chain A, Crystal Structure Of The N-Terminal Laminin G-Like Domain
Of Shbg In Complex With Dihydrotestosterone
Length = 170
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%)
Query: 50 SLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSGAQILTVGHDLNDGHW 109
S E +T P G+I Y D D+F + L +G ++ + + G L+DG W
Sbjct: 29 SSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRW 88
Query: 110 HSVRVKRRVEKTSLTVD 126
H V VK + L VD
Sbjct: 89 HQVEVKMEGDSVLLEVD 105
>pdb|1KDK|A Chain A, The Structure Of The N-Terminal Lg Domain Of Shbg In
Crystals Soaked With Edta
pdb|1KDM|A Chain A, The Crystal Structure Of The Human Sex Hormone-Binding
Globulin (Tetragonal Crystal Form)
Length = 177
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%)
Query: 50 SLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSGAQILTVGHDLNDGHW 109
S E +T P G+I Y D D+F + L +G ++ + + G L+DG W
Sbjct: 30 SSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRW 89
Query: 110 HSVRVKRRVEKTSLTVD 126
H V VK + L VD
Sbjct: 90 HQVEVKMEGDSVLLEVD 106
>pdb|3MW4|A Chain A, Crystal Structure Of Beta-Neurexin 3 Without The Splice
Insert 4
pdb|3MW4|B Chain B, Crystal Structure Of Beta-Neurexin 3 Without The Splice
Insert 4
pdb|3MW4|C Chain C, Crystal Structure Of Beta-Neurexin 3 Without The Splice
Insert 4
Length = 178
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 51 LELEFKTEQPNGLILYTDDG-GTYDFFEIKLVEGALRLRYNLGS-GAQILTVGHDLNDGH 108
L + F T +G+++ D G DF ++ + +G + + +N+G+ I +NDG
Sbjct: 33 LAVGFSTTVKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTPVNDGK 92
Query: 109 WHSVRVKRRVEKTSLTVDN 127
+H VR R +L VDN
Sbjct: 93 YHVVRFTRNGANATLQVDN 111
>pdb|3BIW|E Chain E, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|F Chain F, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|G Chain G, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|H Chain H, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
Length = 243
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 51 LELEFKTEQPNGLILYTDDG-GTYDFFEIKLVEGALRLRYNLGSG-AQILTVGHDLNDGH 108
L + F T Q +++ D G D+ E+ + +G + +++N+G+ I +NDG
Sbjct: 81 LAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGK 140
Query: 109 WHSVRVKRRVEKTSLTVDN 127
+H VR R +L VD+
Sbjct: 141 YHVVRFTRSGGNATLQVDS 159
>pdb|2R1D|A Chain A, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|B Chain B, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|C Chain C, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|D Chain D, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|E Chain E, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|F Chain F, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|G Chain G, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|H Chain H, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|I Chain I, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|W Chain W, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
Length = 226
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 51 LELEFKTEQPNGLILYTDDG-GTYDFFEIKLVEGALRLRYNLGSG-AQILTVGHDLNDGH 108
L + F T Q +++ D G D+ E+ + +G + +++N+G+ I +NDG
Sbjct: 67 LAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGK 126
Query: 109 WHSVRVKRRVEKTSLTVDN 127
+H VR R +L VD+
Sbjct: 127 YHVVRFTRSGGNATLQVDS 145
>pdb|3B3Q|E Chain E, Crystal Structure Of A Synaptic Adhesion Complex
pdb|3B3Q|F Chain F, Crystal Structure Of A Synaptic Adhesion Complex
Length = 197
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 51 LELEFKTEQPNGLILYTDDG-GTYDFFEIKLVEGALRLRYNLGSG-AQILTVGHDLNDGH 108
L + F T Q +++ D G D+ E+ + +G + +++N+G+ I +NDG
Sbjct: 41 LAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGK 100
Query: 109 WHSVRVKRRVEKTSLTVDN 127
+H VR R +L VD+
Sbjct: 101 YHVVRFTRSGGNATLQVDS 119
>pdb|3BOD|A Chain A, Structure Of Mouse Beta-Neurexin 1
Length = 178
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 51 LELEFKTEQPNGLILYTDDG-GTYDFFEIKLVEGALRLRYNLGSG-AQILTVGHDLNDGH 108
L + F T Q +++ D G D+ E+ + +G + +++N+G+ I +NDG
Sbjct: 33 LAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGK 92
Query: 109 WHSVRVKRRVEKTSLTVDN 127
+H VR R +L VD+
Sbjct: 93 YHVVRFTRSGGNATLQVDS 111
>pdb|1QU0|A Chain A, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
pdb|1QU0|B Chain B, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
pdb|1QU0|C Chain C, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
pdb|1QU0|D Chain D, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
Length = 191
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 51 LELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSGAQILTVGHD------L 104
+E EF+T +P G++L D I++++ +L +++ +GA T +D +
Sbjct: 33 VEFEFRTTRPTGVLLGISSQ-KMDGMGIEMID--EKLMFHVDNGAGRFTAIYDAEIPGHM 89
Query: 105 NDGHWHSVRVKRRVEKTSLTVD-NITQTRTSRGKEFRFGHVTSNSWVYIGGMPPWYN 160
+G WH V K+ + L VD N ++ +N V++GG P N
Sbjct: 90 CNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSAST---SADTNDPVFVGGFPGGLN 143
>pdb|1C4R|A Chain A, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|B Chain B, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|C Chain C, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|D Chain D, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|E Chain E, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|F Chain F, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|G Chain G, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|H Chain H, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
Length = 182
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 51 LELEFKTEQPNGLILYTDDG-GTYDFFEIKLVEGALRLRYNLGSG-AQILTVGHDLNDGH 108
L + F T Q +++ D G D+ E+ + +G + +++N+G+ I +NDG
Sbjct: 33 LAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGK 92
Query: 109 WHSVRVKRRVEKTSLTVDN 127
+H VR R +L VD+
Sbjct: 93 YHVVRFTRSGGNATLQVDS 111
>pdb|2WQZ|C Chain C, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2WQZ|D Chain D, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2XB6|C Chain C, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
pdb|2XB6|D Chain D, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
Length = 179
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 51 LELEFKTEQPNGLILYTDDG-GTYDFFEIKLVEGALRLRYNLGSG-AQILTVGHDLNDGH 108
L + F T Q +++ D G D+ E+ + +G + +++N+G+ I +NDG
Sbjct: 34 LAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGK 93
Query: 109 WHSVRVKRRVEKTSLTVDN 127
+H VR R +L VD+
Sbjct: 94 YHVVRFTRSGGNATLQVDS 112
>pdb|3VKF|C Chain C, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
pdb|3VKF|D Chain D, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
Length = 181
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 51 LELEFKTEQPNGLILYTDDG-GTYDFFEIKLVEGALRLRYNLGSG-AQILTVGHDLNDGH 108
L + F T Q +++ D G D+ E+ + +G + +++N+G+ I +NDG
Sbjct: 32 LAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGK 91
Query: 109 WHSVRVKRRVEKTSLTVDN 127
+H VR R +L VD+
Sbjct: 92 YHVVRFTRSGGNATLQVDS 110
>pdb|2R1B|A Chain A, Crystal Structure Of Rat Neurexin 1beta With A Splice
Insert At Ss#4
pdb|2R1B|B Chain B, Crystal Structure Of Rat Neurexin 1beta With A Splice
Insert At Ss#4
Length = 220
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 51 LELEFKTEQPNGLILYTDDG-GTYDFFEIKLVEGALRLRYNLGSG-AQILTVGHDLNDGH 108
L + F T Q +++ D G D+ E+ + +G + +++N+G+ I +NDG
Sbjct: 39 LAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGK 98
Query: 109 WHSVRVKRRVEKTSLTVDN 127
+H VR R +L VD+
Sbjct: 99 YHVVRFTRSGGNATLQVDS 117
>pdb|3MW2|A Chain A, Crystal Structure Of Beta-Neurexin 1 With The Splice
Insert 4
pdb|3MW2|B Chain B, Crystal Structure Of Beta-Neurexin 1 With The Splice
Insert 4
Length = 207
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 51 LELEFKTEQPNGLILYTDDG-GTYDFFEIKLVEGALRLRYNLGSG-AQILTVGHDLNDGH 108
L + F T Q +++ D G D+ E+ + +G + +++N+G+ I +NDG
Sbjct: 32 LAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGK 91
Query: 109 WHSVRVKRRVEKTSLTVDN 127
+H VR R +L VD+
Sbjct: 92 YHVVRFTRSGGNATLQVDS 110
>pdb|1H30|A Chain A, C-Terminal Lg Domain Pair Of Human Gas6
pdb|2C5D|A Chain A, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|B Chain B, Structure Of A Minimal Gas6-Axl Complex
Length = 422
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 52 ELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGA----LRLRYNLGSGAQILTVGHDLNDG 107
E +F+T P G++L+ GG D I L A L+LRYN G G ++ + G +N G
Sbjct: 66 EFDFRTFDPEGILLFA--GGHQDSTWIVLALRAGRLELQLRYN-GVG-RVTSSGPVINHG 121
Query: 108 HWHSVRVKRRVEKTSLTVD 126
W ++ V+ + V+
Sbjct: 122 MWQTISVEELARNLVIKVN 140
>pdb|3BOP|A Chain A, Structure Of Mouse Beta-neurexin 2d4
pdb|3BOP|B Chain B, Structure Of Mouse Beta-neurexin 2d4
pdb|3BOP|C Chain C, Structure Of Mouse Beta-neurexin 2d4
Length = 175
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 51 LELEFKTEQPNGLILYTDDG-GTYDFFEIKLVEGALRLRYNLGSGAQILTVGHDL-NDGH 108
L + F T Q + +++ D G D+ ++ + +G + + +N+G+ + + + +DG
Sbjct: 30 LAVGFSTHQRSAVLVRVDSASGLGDYLQLHIDQGTVGVIFNVGTDDITIDEPNAIVSDGK 89
Query: 109 WHSVRVKRRVEKTSLTVDN 127
+H VR R +L VD+
Sbjct: 90 YHVVRFTRSGGNATLQVDS 108
>pdb|3MW3|A Chain A, Crystal Structure Of Beta-Neurexin 2 With The Splice
Insert 4
Length = 208
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 51 LELEFKTEQPNGLILYTDDG-GTYDFFEIKLVEGALRLRYNLGSGAQILTVGHDL-NDGH 108
L + F T Q + +++ D G D+ ++ + +G + + +N+G+ + + + +DG
Sbjct: 33 LAVGFSTHQRSAVLVRVDSASGLGDYLQLHIDQGTVGVIFNVGTDDITIDEPNAIVSDGK 92
Query: 109 WHSVRVKRRVEKTSLTVDN 127
+H VR R +L VD+
Sbjct: 93 YHVVRFTRSGGNATLQVDS 111
>pdb|3PTY|A Chain A, Crystal Structure Of The C-Terminal Extracellular Domain
Of Mycobacterium Tuberculosis Embc
Length = 406
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 182 SRHFQLVGGMPPWYNAKLTLLALPSVIFEPRFVGFIRNVIYADPHASGPRRQLAHSPP 239
S F VG P W N + L A+PS + R V AD P+ +A +PP
Sbjct: 196 SMEFADVGAAPAWRNLRAPLSAIPSTATQVRLV--------ADDQDLAPQHWIALTPP 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,563,660
Number of Sequences: 62578
Number of extensions: 314175
Number of successful extensions: 639
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 558
Number of HSP's gapped (non-prelim): 63
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)