RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17302
(244 letters)
>gnl|CDD|214598 smart00282, LamG, Laminin G domain.
Length = 132
Score = 103 bits (259), Expect = 4e-28
Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 50 SLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSGAQILTVGHD-LNDGH 108
S+ F+T PNGL+LY G D+ ++L +G L LRY+LGSG LT LNDG
Sbjct: 1 SISFSFRTTSPNGLLLYAGSKGGGDYLALELRDGRLVLRYDLGSGPARLTSDPTPLNDGQ 60
Query: 109 WHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHVTSNSWVYIGGMPP 157
WH V V+R +L+VD + ++ +Y+GG+P
Sbjct: 61 WHRVAVERNGRSVTLSVDGGNRVSGESPGGLTILNLDGP--LYLGGLPE 107
>gnl|CDD|238058 cd00110, LamG, Laminin G domain; Laminin G-like domains are usually
Ca++ mediated receptors that can have binding sites for
steroids, beta1 integrins, heparin, sulfatides,
fibulin-1, and alpha-dystroglycans. Proteins that
contain LamG domains serve a variety of purposes
including signal transduction via cell-surface steroid
receptors, adhesion, migration and differentiation
through mediation of cell adhesion molecules.
Length = 151
Score = 103 bits (258), Expect = 9e-28
Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Query: 33 SQDSYAQLHKW-NAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNL 91
S SY +L S+ F+T PNGL+LY DF ++L +G L LRY+L
Sbjct: 5 SGSSYVRLPTLPAPRTRLSISFSFRTTSPNGLLLYAGSQNGGDFLALELEDGRLVLRYDL 64
Query: 92 GSGAQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHVTSNSWVY 151
GSG+ +L+ LNDG WHSV V+R +L+VD + ++ +Y
Sbjct: 65 GSGSLVLSSKTPLNDGQWHSVSVERNGRSVTLSVDGERVVESGSPGGSALLNLDGP--LY 122
Query: 152 IGGMPP 157
+GG+P
Sbjct: 123 LGGLPE 128
>gnl|CDD|216930 pfam02210, Laminin_G_2, Laminin G domain. This family includes the
Thrombospondin N-terminal-like domain, a Laminin G
subfamily.
Length = 124
Score = 100 bits (250), Expect = 6e-27
Identities = 41/111 (36%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 55 FKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSGA-QILTVGHDLNDGHWHSVR 113
F+T QPNGL+LY DF ++L +G L LRY+LGSG +L G LNDG WH V
Sbjct: 1 FRTTQPNGLLLYAGGEDGLDFLALELEDGRLVLRYDLGSGGSVLLLSGKKLNDGQWHRVS 60
Query: 114 VKRRVEKTSLTVDNITQTRTSRGKEFRFGHVTSNSWVYIGGMPPWYNAKLT 164
V R +L+VD T + ++ +Y+GG+P L
Sbjct: 61 VSRDGRSLTLSVDGGTVVSEALPGSSSILNLNGP--LYLGGLPEDSGLSLL 109
>gnl|CDD|215681 pfam00054, Laminin_G_1, Laminin G domain.
Length = 131
Score = 71.6 bits (176), Expect = 6e-16
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 55 FKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSGAQILTVGHDLNDGHWHSVRV 114
F+T +P+GL+LY DF ++L +G L + Y+LGSGA ++ G LNDG WHSV +
Sbjct: 1 FRTTEPSGLLLYNGTQTERDFLALELRDGRLEVSYDLGSGAAVVRSGDKLNDGKWHSVEL 60
Query: 115 KRRVEKTSLTVDNITQTRTSRGKEFRFGHVTSNSWVYIGGMPPWYNAKLTLLALPS 170
+R +L+VD + + + +Y+GG+P L PS
Sbjct: 61 ERNGRSGTLSVDGEARVTGESPLG-ATTDLDVDGPLYVGGLPSLAVKLRRLAISPS 115
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily. This
family contains members of the 2-oxoglutarate (2OG) and
Fe(II)-dependent oxygenase superfamily. This family
includes the C-terminal of prolyl 4-hydroxylase alpha
subunit. The holoenzyme has the activity EC:1.14.11.2
catalyzing the reaction: Procollagen L-proline +
2-oxoglutarate + O2 <=> procollagen trans-
4-hydroxy-L-proline + succinate + CO2. The full enzyme
consists of a alpha2 beta2 complex with the alpha
subunit contributing most of the parts of the active
site. The family also includes lysyl hydrolases,
isopenicillin synthases and AlkB.
Length = 96
Score = 31.6 bits (72), Expect = 0.096
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 63 LILYTDDGGTY-----DFFEIKLVEGALRLRYNLGSGAQILTVGHDLNDGHWHSVRVKRR 117
++L GG + ++ GAL + N G +L+ G + H V
Sbjct: 29 ILLQDGGGGLQFLKDGGWIDVPPGPGALVV--NFGDLLLVLSNGRYKS--VLHRVLPNTG 84
Query: 118 VEKTSLTV 125
E+ S+
Sbjct: 85 GERISIAF 92
>gnl|CDD|185754 cd09215, Thaumatin-like, the sweet-tasting protein, thaumatin, and
thaumatin-like proteins involved in host defense. This
family is represented by the sweet-tasting protein
thaumatin from the African berry Thaumatococcus
daniellii and thaumatin-like proteins (TLPs) involved in
host defense and a wide range of developmental processes
in fungi, plants, and animals. Plant TLPs are classified
as pathogenesis-related (PR) protein family 5 (PR5),
their expression is induced by environmental stresses
such as pathogen/pest attack, drought and cold. TLPs
included in this family are such proteins as zeamatin,
found in high concentrations in cereal seeds; osmotin, a
salt-induced protein in osmotically stressed plants; and
PpAZ44, a propylene-induced TLP in abscission of young
fruit. Several members of the plant TLP family have been
reported as food allergens from fruits (i.e., cherry,
Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and
pollen allergens from conifers (i.e., mountain cedar,
Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry
j3). Thaumatin and TLPs are three-domain, crescent-fold
structures with either an electronegative,
electropositive, or neutral cleft occurring between
domains I and II. It has been proposed that the
antifungal activity of plant PR5 proteins relies on the
strong electronegative character of this cleft. Some
TLPs hydrolyze the beta-1,3-glucans of the type commonly
found in fungal walls. Most TLPs contain 16 conserved
Cys residues. A deletion within the third domain (domain
II) of the Triticum aestivum thaumatin-like xylanase
inhibitor is observed, thus, only 10 conserved Cys
residues are present within this smaller TLP and similar
homologs.
Length = 157
Score = 29.0 bits (65), Expect = 1.4
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 48 NGSLELEFKTEQPNGLILYT-DDGGTYDFFEIKLVEGALRLRYNL 91
NG L + P L +T GG D+++I LV+G YNL
Sbjct: 71 NGGLNCQGTGGPPATLAEFTLSGGGGLDYYDISLVDG-----YNL 110
>gnl|CDD|185758 cd09219, TLP-F, thaumatin-like proteins: basidiomycete homologs.
This subfamily is represented by Lentinula edodes TLG1,
a thaumatin-like protein (TLP), as well as, other
basidiomycete homologs. In general, TLPs are involved
in host defense and a wide range of developmental
processes in fungi, plants, and animals. TLG1 TLP is
involved in lentinan degradation and fruiting body
senescence. TLG1 expressed in Escherichia coli and
Aspergillus oryzae exhibited beta-1,3-glucanase activity
and demonstrated lentinan degrading activity. TLG1 is
proposed to be involved in lentinan and cell wall
degradation during senescence following harvest and
spore diffusion. TLPs are three-domain, crescent-fold
structures with either an electronegative,
electropositive, or neutral cleft occurring between
domains I and II. TLG1 from Lentinula edodes contains
the required acidic amino acids conserved in the
appropriate positions to possess an electronegative
cleft. TLPs within this subfamily contain 13 conserved
Cys residues; the number of total Cys residues in these
TLPs varies from 16 in L. edodes TLG1 to 18 in other
basidiomycete homologs.
Length = 229
Score = 29.6 bits (66), Expect = 1.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 48 NGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEG 83
G L E + P L +T GG D ++I LV+G
Sbjct: 76 GGGLTCENSDQPPASLAEFTLIGGKEDNYDISLVDG 111
>gnl|CDD|215149 PLN02265, PLN02265, probable phenylalanyl-tRNA synthetase beta
chain.
Length = 597
Score = 28.9 bits (65), Expect = 2.6
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 15/56 (26%)
Query: 128 ITQTRTSRGKEF-----------RFGHVTSNSWVYIGGMPPWYNAKLTLLALPSVI 172
+ QT++ R E +F H+ NS V+ P Y++ T+L+LP +I
Sbjct: 191 LKQTKSFRADELMEFYKSDMKLKKFLHIIENSPVF----PVIYDSNRTVLSLPPII 242
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.442
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,702,925
Number of extensions: 1203269
Number of successful extensions: 1022
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1020
Number of HSP's successfully gapped: 26
Length of query: 244
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 150
Effective length of database: 6,768,326
Effective search space: 1015248900
Effective search space used: 1015248900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)