RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17302
(244 letters)
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 134 bits (337), Expect = 4e-36
Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 10/155 (6%)
Query: 27 SFMLDGSQDSYAQLHKWNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGA-L 85
F G++ + + KWNA + + KT GL+LY DD G DF E+ L G L
Sbjct: 2 EF--PGAEGQWTRFPKWNACCESEMSFQLKTRSARGLVLYFDDEGFCDFLELILTRGGRL 59
Query: 86 RLRYNLGSG-AQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHV 144
+L +++ L +NDG WH+VR++R+ T+L +D + + R +
Sbjct: 60 QLSFSIFCAEPATLLTDTPVNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRR--DM 117
Query: 145 TSNSWVYIGGMPPWYNAKLTLLALPSVI----FAG 175
T S +++GG+PP A L L SV F G
Sbjct: 118 TVFSGLFVGGLPPELRAAALKLTLASVREREPFKG 152
Score = 108 bits (270), Expect = 5e-27
Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 16/149 (10%)
Query: 35 DSYAQLHKWNAALNGSLELEFKTEQPNGLILYTDDGGTY------------DFFEIKLVE 82
+S+ L KWNA GS+ +F+T +PNGLIL++ + DFF I++++
Sbjct: 430 ESFISLPKWNAKKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLD 489
Query: 83 GALRLRYNLGSG-AQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRF 141
G L L ++GSG +I + +NDG W+ V +R +++V+ + T+ G+
Sbjct: 490 GHLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSGTISVNTLRTPYTAPGESEIL 549
Query: 142 GHVTSNSWVYIGGMPPWYNAKLTLLALPS 170
+ +Y+GG+P + + +
Sbjct: 550 ---DLDDELYLGGLPENKAGLVFPTEVWT 575
Score = 102 bits (256), Expect = 3e-25
Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 6/145 (4%)
Query: 33 SQDSYAQLHKWNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLG 92
++ SY L A + L +FKT +GLILY G DF ++LV+G L ++LG
Sbjct: 844 TKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNSGDGN-DFIVVELVKGYLHYVFDLG 902
Query: 93 SGAQILTV--GHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHVTSNSWV 150
+GA ++ LND WH+V + R + T ++ S +
Sbjct: 903 NGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGAR---NLDLKSDL 959
Query: 151 YIGGMPPWYNAKLTLLALPSVIFAG 175
YIGG+ L L F G
Sbjct: 960 YIGGVAKETYKSLPKLVHAKEGFQG 984
Score = 99.5 bits (247), Expect = 4e-24
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 10/141 (7%)
Query: 26 HSFMLDGSQDSYAQLHKWNAALNGS---LELEFKTEQPNGLILYTDDGGTYDFFEIKLVE 82
++ Y + S + L FKT Q NGL+L+T G + D+ + L
Sbjct: 230 EEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHT--GKSADYVNLALKN 287
Query: 83 GALRLRYNLGSGAQ---ILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEF 139
GA+ L NLGSGA + V ND WH V+V R + + +++VD I T +++
Sbjct: 288 GAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDY 347
Query: 140 RFGHVTSNSWVYIGGMPPWYN 160
+ S+ + Y+GG P +
Sbjct: 348 T--MLGSDDFFYVGGSPSTAD 366
Score = 95.3 bits (236), Expect = 1e-22
Identities = 37/152 (24%), Positives = 59/152 (38%)
Query: 7 YLTPCVLTMLWVLLLLPLGHSFMLDGSQDSYAQLHKWNAALNGSLELEFKTEQPNGLILY 66
Y+ C T DGS QL + L F++++ G+++
Sbjct: 640 YVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMA 699
Query: 67 TDDGGTYDFFEIKLVEGALRLRYNLGSGAQILTVGHDLNDGHWHSVRVKRRVEKTSLTVD 126
T + D ++L G ++L NLG G + L G++LND WH+VRV RR + LTVD
Sbjct: 700 TTSRDSADTLRLELDAGRVKLTVNLGKGPETLFAGYNLNDNEWHTVRVVRRGKSLKLTVD 759
Query: 127 NITQTRTSRGKEFRFGHVTSNSWVYIGGMPPW 158
+ + + I
Sbjct: 760 DQQAMTGQMAGDHTRLEFHNIETGIITERRYL 791
Score = 94.1 bits (233), Expect = 4e-22
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 50 SLELEFKTEQPNGLILYTDDG-GTYDFFEIKLVEGALRLRYNLGSG-AQILTVGHDLNDG 107
L + F T Q +++ D G D+ E+ + +G + +++N+G+ I +NDG
Sbjct: 1084 RLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDG 1143
Query: 108 HWHSVRVKRRVEKTSLTVDNIT-QTRTSRGKEFRFGHVTSNSWVYIGGMPP 157
+H VR R +L VD+ R G++ S + + IGG
Sbjct: 1144 KYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTI--FNSQATIIIGGKEQ 1192
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus}
SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Length = 394
Score = 124 bits (313), Expect = 8e-34
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 24 LGHSFMLDGSQDSYAQLH--KWNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLV 81
L S S++S+ + ++ELE +TE +GL+ Y DF ++L
Sbjct: 32 LTGSKQFGLSRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMARINHADFATVQLR 91
Query: 82 EGALRLRYNLGSGAQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRF 141
G Y+LGSG + +NDG WH +++ R ++ L VD+ + S K
Sbjct: 92 NGFPYFSYDLGSGDTSTMIPTKINDGQWHKIKIVRVKQEGILYVDDASSQTISPKK---A 148
Query: 142 GHVTSNSWVYIGGMPPWYNAKL 163
+ +Y+GG+P Y +
Sbjct: 149 DILDVVGILYVGGLPINYTTRR 170
Score = 98.9 bits (246), Expect = 3e-24
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 8/127 (6%)
Query: 35 DSYAQLHK-WNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGS 93
+A+ + L+ +E EF+T +P G++L D I++++ L + G+
Sbjct: 219 TGFAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGVSSQKM-DGMGIEMIDEKLMFHVDNGA 277
Query: 94 G----AQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHVTSNSW 149
G + + +G WH V K+ + L VD S +N
Sbjct: 278 GRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSAST--SADTNDP 335
Query: 150 VYIGGMP 156
V++GG P
Sbjct: 336 VFVGGFP 342
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4
PDB: 1pz8_A 1pz9_A 1q56_A
Length = 204
Score = 119 bits (301), Expect = 1e-33
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 5/139 (3%)
Query: 26 HSFMLDGSQDSYAQLHKWNAALNGSLELEFKTEQPNGLILYT-DDGGTYDFFEIKLVEGA 84
++ Y A + EL KTE GLIL++ D+ + +V+G
Sbjct: 27 NAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGKGLERSDYIALAIVDGF 86
Query: 85 LRLRYNLGSGAQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNI-TQTRTSRGKEFRFGH 143
+++ Y+LGS +L +N HW ++ R + SL V N T +S +
Sbjct: 87 VQMMYDLGSKPVVLRSTVPINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQLD- 145
Query: 144 VTSNSWVYIGGMPPWYNAK 162
++ +++GGM A
Sbjct: 146 --TDGALWLGGMERLSVAH 162
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding
protein; 1.9A {Mus musculus}
Length = 383
Score = 123 bits (311), Expect = 1e-33
Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 6/154 (3%)
Query: 24 LGHSFMLDGSQDSYAQLHKWNAALNG--SLELEFKTEQPNGLILYTDDGGTYDFFEIKLV 81
+ + SQ+S+ L + + ++L +T +GLI Y D+ ++L
Sbjct: 18 VAGAHQFGLSQNSHLVLPLQQSDVRKRLQVQLSIRTFASSGLIYYVAHQNQMDYATLQLQ 77
Query: 82 EGALRLRYNLGSGAQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRF 141
EG L ++LG G ++ L+DG WH+V+ + K +TVD + +
Sbjct: 78 EGRLHFMFDLGKGRTKVSHPALLSDGKWHTVKTEYIKRKAFMTVDGQESPSVTVVGKATT 137
Query: 142 GHVTSNSWVYIGGMPPWYNAKLTLLALPSVIFAG 175
V +Y+GG+P Y A+ S
Sbjct: 138 LDVERK--LYLGGLPSHYRARNIGTITHS--IPA 167
Score = 99.7 bits (248), Expect = 1e-24
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 9/130 (6%)
Query: 33 SQDSYAQLHKW--NAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYN 90
YA L K L+ + LEF+T NG++L D +++V+G + N
Sbjct: 204 EGSGYAALVKEGYKVRLDLQITLEFRTTSKNGVLLGISSAKV-DAIGLEIVDGKVLFHVN 262
Query: 91 LGSGAQILTV----GHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHVTS 146
G+G T L DG WH+++ + + LTVD + + +
Sbjct: 263 NGAGRITATYQPRAARALCDGKWHTLQAHKSKHRIVLTVDG--NSVRAESPHTHSTSADT 320
Query: 147 NSWVYIGGMP 156
N +Y+GG P
Sbjct: 321 NDPIYVGGYP 330
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A
{Bos taurus}
Length = 182
Score = 118 bits (296), Expect = 3e-33
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 3/133 (2%)
Query: 25 GHSFMLDGSQDSYAQLHKWNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGA 84
DGS QL + L F++++ G+++ T + D ++L G
Sbjct: 5 ATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGR 64
Query: 85 LRLRYNLGSGAQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHV 144
++L NLG G + L G++LND WH+VRV RR + LTVD+ +
Sbjct: 65 VKLTVNLGKGPETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEF 124
Query: 145 TSNSWVYIGGMPP 157
+ + G +
Sbjct: 125 HN---IETGIITE 134
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein;
HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB:
1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Length = 205
Score = 118 bits (297), Expect = 4e-33
Identities = 28/133 (21%), Positives = 45/133 (33%), Gaps = 3/133 (2%)
Query: 24 LGHSFMLDGSQDSYAQLHKWNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEG 83
L + + S E +T P G+I Y D D+F + L +G
Sbjct: 18 LSNGP--GQEPIAVMTFDLTKIT-KTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDG 74
Query: 84 ALRLRYNLGSGAQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGH 143
++ + + G L+DG WH V VK + L VD R +
Sbjct: 75 RPEIQLHNHWAQLTVGAGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSK 134
Query: 144 VTSNSWVYIGGMP 156
+ +GG+
Sbjct: 135 RHPIMRIALGGLL 147
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller,
laminin-G, signaling, protein binding; HET: NAG; 2.85A
{Rattus norvegicus} PDB: 3v65_A
Length = 191
Score = 117 bits (294), Expect = 6e-33
Identities = 31/144 (21%), Positives = 60/144 (41%), Gaps = 9/144 (6%)
Query: 25 GHSFM----LDGSQDSYAQLHKWNAALNGSLELEFKTEQPNGLILYT-DDGGTYDFFEIK 79
G +++ + ++ A + EL +TE GL+L+ D+ +
Sbjct: 9 GRTYIEYLNAVIESELTNEIPAEKALQSNHFELSLRTEATQGLVLWIGKAAERADYMALA 68
Query: 80 LVEGALRLRYNLGSGAQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNI-TQTRTSRGKE 138
+V+G L+L Y+LGS +L +N W +R R + SL V N T +S
Sbjct: 69 IVDGHLQLSYDLGSQPVVLRSTVKVNTNRWLRIRAHREHREGSLQVGNEAPVTGSSPLG- 127
Query: 139 FRFGHVTSNSWVYIGGMPPWYNAK 162
+ ++ +++GG+ +
Sbjct: 128 --ATQLDTDGALWLGGLQKLPVGQ 149
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein,
vitamin K-dependent protein, AXL/SKY/MER ligand, laminin
G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4
b.29.1.4 PDB: 2c5d_A*
Length = 422
Score = 119 bits (299), Expect = 9e-32
Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 4/134 (2%)
Query: 24 LGHSFMLDGSQDSYAQLHKWNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEG 83
LG F G+ + + E +F+T P G++L+ + + L G
Sbjct: 41 LGRMF--SGTPVIRLRFKRLQP-TRLVAEFDFRTFDPEGILLFAGGHQDSTWIVLALRAG 97
Query: 84 ALRLRYNLGSGAQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNIT-QTRTSRGKEFRFG 142
L L+ ++ + G +N G W ++ V+ + V+ G F+
Sbjct: 98 RLELQLRYNGVGRVTSSGPVINHGMWQTISVEELARNLVIKVNRDAVMKIAVAGDLFQPE 157
Query: 143 HVTSNSWVYIGGMP 156
+ + +GG+P
Sbjct: 158 RGLYHLNLTVGGIP 171
Score = 72.9 bits (178), Expect = 4e-15
Identities = 19/121 (15%), Positives = 35/121 (28%), Gaps = 15/121 (12%)
Query: 50 SLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSGAQILTVGH------- 102
+ + G++ + + L +L V H
Sbjct: 252 EVVAHIRPAADTGVLFALWAPD-LRAVPLSVALVDYHSTKKLKKQLVVLAVEHTALALME 310
Query: 103 -DLNDGHWHSVRVKRRVEKTSLTVDN------ITQTRTSRGKEFRFGHVTSNSWVYIGGM 155
+ DG H V V R + +L VD ++ + H+ S + GG+
Sbjct: 311 IKVCDGQEHVVTVSLRDGEATLEVDGTRGQSEVSAAQLQERLAVLERHLRSPVLTFAGGL 370
Query: 156 P 156
P
Sbjct: 371 P 371
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal
binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Length = 195
Score = 113 bits (285), Expect = 1e-31
Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 14/134 (10%)
Query: 35 DSYAQL-----HKWNAALNGSLELEFKTEQPNGLILYT-----DDGGTYDFFEIKLVEGA 84
D + + + ++ELE +T +GL+L+ + G DF + L +G
Sbjct: 13 DGFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQDGH 72
Query: 85 LRLRYNLGSGAQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNI-TQTRTSRGKEFRFGH 143
L RY LGSG L +NDG WH V R + S+ VD + S G
Sbjct: 73 LVFRYQLGSGEARLVSEDPINDGEWHRVTALREGRRGSIQVDGEELVSGRSPGP---NVA 129
Query: 144 VTSNSWVYIGGMPP 157
V + VYIGG P
Sbjct: 130 VNAKGSVYIGGAPD 143
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin
G-like domain, jellyroll, androgen binding protein
(ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4
PDB: 1kdk_A* 1kdm_A*
Length = 170
Score = 112 bits (281), Expect = 3e-31
Identities = 28/136 (20%), Positives = 45/136 (33%), Gaps = 7/136 (5%)
Query: 26 HSFMLDGSQDSYAQLHKWNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGAL 85
S + S E +T P G+I Y D D+F + L +G
Sbjct: 6 LSNGPGQEPIAVMTFDLTKI-TKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRP 64
Query: 86 RLRYNLGSGAQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHVT 145
++ + + G L+DG WH V VK + L VD R +
Sbjct: 65 EIQLHNHWAQLTVGAGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGHPIMR-- 122
Query: 146 SNSWVYIGGMPPWYNA 161
+ +GG+ +
Sbjct: 123 ----IALGGLLFPASN 134
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2,
protein structure initiative; 1.40A {Mus musculus}
Length = 189
Score = 109 bits (275), Expect = 4e-30
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 9/141 (6%)
Query: 27 SFMLDGSQDSYAQL-----HKWNAALNGSLELEFKTEQPNGLILYTDD--GGTYDFFEIK 79
F+ D + SY +L + + +LE+ F P+GL+LY G DF +
Sbjct: 9 PFLADFNGFSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKTDGKGDFVSLA 68
Query: 80 LVEGALRLRYNLGSGAQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEF 139
L L RY+LG GA I+ + G W V ++R K +L V + +
Sbjct: 69 LHNRHLEFRYDLGKGAAIIRSKEPIALGTWVRVFLERNGRKGALQVGDGPRVLGESPVPH 128
Query: 140 RFGHVTSNSWVYIGGMPPWYN 160
++ +Y+GG P +
Sbjct: 129 TMLNLKEP--LYVGGAPDFSK 147
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 113 bits (284), Expect = 1e-29
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 8/146 (5%)
Query: 33 SQDSYAQLHKWNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLG 92
++ SY L A + L +FKT +GLILY G DF ++LV+G L ++LG
Sbjct: 12 TKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNSGDGN-DFIVVELVKGYLHYVFDLG 70
Query: 93 SGAQILTV--GHDLNDGHWHSVRVKRRVEKT-SLTVDNITQTRTSRGKEFRFGHVTSNSW 149
+GA ++ LND WH+V + R ++ +D T+ + G ++ S
Sbjct: 71 NGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGAR----NLDLKSD 126
Query: 150 VYIGGMPPWYNAKLTLLALPSVIFAG 175
+YIGG+ L L F G
Sbjct: 127 LYIGGVAKETYKSLPKLVHAKEGFQG 152
Score = 95.8 bits (238), Expect = 3e-23
Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 4/134 (2%)
Query: 26 HSFMLDGSQDSYAQLHKWNAALNG-SLELEFKTEQPNGLILY-TDDGGTYDFFEIKLVEG 83
+ F G Q +Y + L + F T Q +++ G D+ E+ + +G
Sbjct: 227 YIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQG 286
Query: 84 ALRLRYNLGSG-AQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFG 142
+ +++N+G+ I +NDG +H VR R +L VD+ +
Sbjct: 287 KIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGR-QLT 345
Query: 143 HVTSNSWVYIGGMP 156
S + + IGG
Sbjct: 346 IFNSQATIIIGGKE 359
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Length = 184
Score = 108 bits (271), Expect = 2e-29
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 15/140 (10%)
Query: 25 GHSFMLDGSQDSYAQLHKWNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGA 84
G + Y + + + L FKT Q NGL+L+T G + D+ + L GA
Sbjct: 12 GSEYF------CYDLSQNPIQSSSDEITLSFKTLQRNGLMLHT--GKSADYVNLALKNGA 63
Query: 85 LRLRYNLGSGAQ---ILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNI-TQTRTSRGKEFR 140
+ L NLGSGA + V ND WH V+V R + + +++VD I T T ++
Sbjct: 64 VSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQED--- 120
Query: 141 FGHVTSNSWVYIGGMPPWYN 160
+ + S+ + Y+GG P +
Sbjct: 121 YTMLGSDDFFYVGGSPSTAD 140
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
glycoprotein, laminin EGF-like domain, extracellular
matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
musculus}
Length = 608
Score = 114 bits (285), Expect = 4e-29
Identities = 24/166 (14%), Positives = 60/166 (36%), Gaps = 17/166 (10%)
Query: 35 DSYAQLH-KWNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGS 93
D + ++ + KT + L+ Y DF I++ +G + +++GS
Sbjct: 18 DCVRTYRPEIKKGSYNNIVVHVKTAVADNLLFYLGSAKFIDFLAIEMRKGKVSFLWDVGS 77
Query: 94 GAQILTV-GHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGK---------EFRFGH 143
G + ++D +W+ + R S++V + + S +
Sbjct: 78 GVGRVEYPDLTIDDSYWYRIEASRTGRNGSISVRALDGPKASMVPSTYHSVSPPGYTILD 137
Query: 144 VTSNSWVYIGGMPPWYNAKLTLLA------LPSVIFAGERVPVWSR 183
V +N+ +++GG+ + + F + + +W+
Sbjct: 138 VDANAMLFVGGLTGKIKKADAVRVITFTGCMGETYFDNKPIGLWNF 183
Score = 111 bits (278), Expect = 3e-28
Identities = 26/145 (17%), Positives = 61/145 (42%), Gaps = 5/145 (3%)
Query: 26 HSFMLDGSQDSYAQLHKWNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGAL 85
+ DG + ++ +F+T + L++Y DF ++L +G +
Sbjct: 204 GTIQFDGEGYALVSRPIRWYPNISTVMFKFRTFSSSALLMYLATRDLKDFMSVELSDGHV 263
Query: 86 RLRYNLGSGAQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGK-----EFR 140
++ Y+LGSG + + NDG W + + R ++ ++++ +I +
Sbjct: 264 KVSYDLGSGMTSVVSNQNHNDGKWKAFTLSRIQKQANISIVDIDSNQEENVATSSSGNNF 323
Query: 141 FGHVTSNSWVYIGGMPPWYNAKLTL 165
+ ++ +Y GG+P N + +
Sbjct: 324 GLDLKADDKIYFGGLPTLRNLRPEV 348
Score = 98.6 bits (245), Expect = 8e-24
Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 9/129 (6%)
Query: 33 SQDSYAQLHKWNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLG 92
+ + +L + + + L F T +G+IL GG ++ I L +G L + + G
Sbjct: 393 PKPGFVELAAVSIDVGTEINLSFSTRNESGIILLGSGGGQ-AYYAIFLNKGRLEVHLSSG 451
Query: 93 SGAQILTV----GHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHVTSNS 148
+ V + +DG HSV V+R ++ +D + + +E
Sbjct: 452 TRTMRKIVIKPEPNRFHDGREHSVHVERTRGIFTVQIDEDRRHMQNLTEE----QPIEVK 507
Query: 149 WVYIGGMPP 157
+++GG PP
Sbjct: 508 KLFVGGAPP 516
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium,
cell adhesion, EGF-like domain, glycoprotein, membrane,
metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C*
2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Length = 178
Score = 104 bits (262), Expect = 3e-28
Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 8/144 (5%)
Query: 23 PLGHSFMLDGSQDSYAQL----HKWNAALNGSLELEFKTEQPNGLILYTDD-GGTYDFFE 77
PLG ++ + + + L + F T Q +++ D G D+ E
Sbjct: 2 PLGSTY-IFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLE 60
Query: 78 IKLVEGALRLRYNLGSG-AQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRG 136
+ + +G + +++N+G+ I +NDG +H VR R +L VD+
Sbjct: 61 LHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPA 120
Query: 137 KEFRFGHVTSNSWVYIGGMPPWYN 160
S + + IGG
Sbjct: 121 GRQ-LTIFNSQATIIIGGKEQGQP 143
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB:
3biw_E*
Length = 226
Score = 101 bits (253), Expect = 2e-26
Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 7/135 (5%)
Query: 32 GSQDSYAQL----HKWNAALNGSLELEFKTEQPNGLILYTDD-GGTYDFFEIKLVEGALR 86
+ + L + F T Q +++ D G D+ E+ + +G +
Sbjct: 44 SKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIG 103
Query: 87 LRYNLGSG-AQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHVT 145
+++N+G+ I +NDG +H VR R +L VD+ +
Sbjct: 104 VKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGR-QLTIFN 162
Query: 146 SNSWVYIGGMPPWYN 160
S + + IGG
Sbjct: 163 SQATIIIGGKEQGQP 177
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E*
3mw3_A*
Length = 220
Score = 97.1 bits (241), Expect = 7e-25
Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 11/154 (7%)
Query: 42 KWNAALNGSLELEFKTEQPNGLILYTDD-GGTYDFFEIKLVEGALRLRYNLGSG-AQILT 99
+ L + F T Q +++ D G D+ E+ + +G + +++N+G+ I
Sbjct: 30 DRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEE 89
Query: 100 VGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEF---RFGHVTSNSWVYIGGMP 156
+NDG +H VR R +L VD+ R +G +
Sbjct: 90 SNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGNNDNERLAIARQRIPYRLGRVV 149
Query: 157 ----PWYNAKLTLLALPSVIFAGERVPVWSRHFQ 186
+LT+ + I G + + FQ
Sbjct: 150 DEWLLDKGRQLTIFNSQATIIIGGKEQ--GQPFQ 181
>4azz_A Levanase; hydrolase; 1.70A {Bacillus subtilis}
Length = 172
Score = 37.9 bits (88), Expect = 0.001
Identities = 6/87 (6%), Positives = 27/87 (31%), Gaps = 7/87 (8%)
Query: 48 NGSLELEFKTEQPN-----GLIL-YTDDGGTYDFFEIKLVEGALRLRYNLGSGAQIL-TV 100
+ + E + + N L+ D + ++ A ++
Sbjct: 44 DFTYESDITIKDGNGRGAGALMFRSDKDAKNGYLANVDAKHDLVKFFKFENGAASVIAEY 103
Query: 101 GHDLNDGHWHSVRVKRRVEKTSLTVDN 127
++ + ++ + ++ + +D+
Sbjct: 104 KTPIDVNKKYHLKTEAEGDRFKIYLDD 130
>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET:
SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A
2ouj_A
Length = 251
Score = 34.8 bits (79), Expect = 0.018
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 5/82 (6%)
Query: 50 SLELEFKTEQPNG--LILYTDDGGTYDFFEIKL--VEGALRLRYNLGSGAQILTV-GHDL 104
L + + L+ + F + G L L + +++V L
Sbjct: 75 LLLASLRQMKKTRGTLLALERKDHSGQVFSVVSNGKAGTLDLSLTVQGKQHVVSVEEALL 134
Query: 105 NDGHWHSVRVKRRVEKTSLTVD 126
G W S+ + + ++ L +D
Sbjct: 135 ATGQWKSITLFVQEDRAQLYID 156
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.020
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 26/66 (39%)
Query: 5 VLYLT----PCVLTM---LWVLL----LLPL-----GHSFMLDGSQDSYAQLHKWNAALN 48
+L T P + M + L L+P GHS L G YA L A+L
Sbjct: 1725 LLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS--L-GE---YAAL----ASLA 1774
Query: 49 GSLELE 54
+ +E
Sbjct: 1775 DVMSIE 1780
Score = 27.7 bits (61), Expect = 5.1
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 29/80 (36%)
Query: 182 SRHFQLVGG-------MPP--WYNAK------LTLLALPSVIF----EP--------RFV 214
+R L G +P ++ A +L P+ F EP +F+
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 215 GFIRNVIYADPHASGPRRQL 234
G++ +++ +P G Q+
Sbjct: 66 GYVSSLV--EPSKVGQFDQV 83
>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding
protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A
1z78_A
Length = 209
Score = 33.2 bits (75), Expect = 0.046
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 5/82 (6%)
Query: 50 SLELEFKTEQPNG--LILYTDDGGTYDFFEIKL--VEGALRLRYNLGSGAQILTV-GHDL 104
L + + L+ + F + G L L + +++V L
Sbjct: 65 LLLASLRQMKKTRGTLLALERKDHSGQVFSVVSNGKAGTLDLSLTVQGKQHVVSVEEALL 124
Query: 105 NDGHWHSVRVKRRVEKTSLTVD 126
G W S+ + + ++ L +D
Sbjct: 125 ATGQWKSITLFVQEDRAQLYID 146
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.12
Identities = 17/130 (13%), Positives = 44/130 (33%), Gaps = 38/130 (29%)
Query: 8 LTPCVLTMLW-------VLLLLPLGHSF-MLDGSQDSYA-QLHKWNAALNGSLELEFKTE 58
+ +L+++W V++++ H + +++ + S+ LE K +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP--------SIYLELKVK 438
Query: 59 QPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSGAQILTVGHDLNDGHWHS-----VR 113
N L +V+ YN+ + D +++S ++
Sbjct: 439 LENEYAL-----------HRSIVD-----HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 114 VKRRVEKTSL 123
E+ +L
Sbjct: 483 NIEHPERMTL 492
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer,
pentraxin fold, cyclic heptamer, invertebrate lectin,
sugar binding protein; 2.30A {Limulus polyphemus} PDB:
3flr_A 3flt_A
Length = 217
Score = 30.0 bits (67), Expect = 0.48
Identities = 20/142 (14%), Positives = 39/142 (27%), Gaps = 13/142 (9%)
Query: 50 SLELEFKTEQPNG--LILYTDDGGTYDFFEIKLVEGALRLRYNL---GSGAQILTVGHDL 104
++ K N + F V+ L L S + ++ ++
Sbjct: 35 TVCQRIKPFHRNTGYIFSCATSNQDNQFITSMYVKSDGTLNLGLQVNASSNKYISCPIEI 94
Query: 105 NDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGH-VTSNSWVYIGGMPPWYNAKL 163
G W+ V + V + + GH +++ V IG
Sbjct: 95 ELGQWYHVCHVWSGVDGRMAV-YANGSPCGTMENVGKGHQISAGGTVVIGQEQDKIGGGF 153
Query: 164 TLLALPSVIFAGE--RVPVWSR 183
++GE + VW
Sbjct: 154 E----EQESWSGELSDLQVWDE 171
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.53
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 77 EIKLVEGALRLRYNLGSGAQILTV 100
+K ++ +L+L Y S A L +
Sbjct: 21 ALKKLQASLKL-YADDS-APALAI 42
>2atz_A H. pylori predicted coding region HP0184; structural genomics, PSI,
protein struc initiative, midwest center for structural
genomics, MCSG; HET: DGT; 2.00A {Helicobacter pylori}
SCOP: d.264.1.3
Length = 180
Score = 29.2 bits (65), Expect = 0.75
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 155 MPPWYNAKLTLLALPSVIFAGERVPVWSRHF 185
P +N +LALP +FA ER W++H
Sbjct: 154 WPKEFN----ILALPYEVFAKERGSSWAKHL 180
>2hzm_B RNA polymerase II mediator complex subunit 18; beta barrel,
channel, transcription; 2.40A {Saccharomyces cerevisiae}
PDB: 2hzs_B 3rj1_E
Length = 317
Score = 27.1 bits (59), Expect = 5.8
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 186 QLVGGMPPWYNAKLTLLALPSVIFEPRFVGFIRNVI 221
+ G PP L + P+ ++ V ++
Sbjct: 23 TTISGNPPLLYNSLCTVWKPNPSYDVENVNSRNQLV 58
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural
genomics of infectious diseases (csgid national
institute of allergy and infectious diseases; 1.70A
{Streptococcus pneumoniae}
Length = 265
Score = 26.9 bits (60), Expect = 6.1
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 68 DDGGTYDFFEIKLVEGALRLRYNL--GSGAQILTVGHDLN 105
G+ F+ ++EG ++ +GA V
Sbjct: 129 AGSGSRATFDTVIMEGQSAMQSQEQDSNGAVKSIVSKSPG 168
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.442
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,841,887
Number of extensions: 226309
Number of successful extensions: 496
Number of sequences better than 10.0: 1
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 46
Length of query: 244
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 153
Effective length of database: 4,160,982
Effective search space: 636630246
Effective search space used: 636630246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)