RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17302
(244 letters)
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6
{Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 98.7 bits (245), Expect = 4e-26
Identities = 26/138 (18%), Positives = 51/138 (36%), Gaps = 4/138 (2%)
Query: 21 LLPLGHSFMLDGSQDSYAQLHKWNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKL 80
L LG F G+ + + E +F+T P G++L+ + + L
Sbjct: 34 SLYLGRMF--SGTPVIRLRFKRLQP-TRLVAEFDFRTFDPEGILLFAGGHQDSTWIVLAL 90
Query: 81 VEGALRLRYNLGSGAQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDN-ITQTRTSRGKEF 139
G L L+ ++ + G +N G W ++ V+ + V+ G F
Sbjct: 91 RAGRLELQLRYNGVGRVTSSGPVINHGMWQTISVEELARNLVIKVNRDAVMKIAVAGDLF 150
Query: 140 RFGHVTSNSWVYIGGMPP 157
+ + + +GG+P
Sbjct: 151 QPERGLYHLNLTVGGIPF 168
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 189
Score = 95.7 bits (237), Expect = 4e-25
Identities = 42/182 (23%), Positives = 71/182 (39%), Gaps = 16/182 (8%)
Query: 10 PCVLTMLWVLLLLPLGHSFMLDGSQDSYAQLH--KWNAALNGSLELEFKTEQPNGLILYT 67
PCV LL F S++S+ + ++ELE +TE +GL+ Y
Sbjct: 3 PCVAE--SEPALLTGSKQF--GLSRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYM 58
Query: 68 DDGGTYDFFEIKLVEGALRLRYNLGSGAQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDN 127
DF ++L G Y+LGSG + +NDG WH +++ R ++ L VD+
Sbjct: 59 ARINHADFATVQLRNGFPYFSYDLGSGDTSTMIPTKINDGQWHKIKIVRVKQEGILYVDD 118
Query: 128 ITQTRTSRGKEFRFGHVTSNSWVYIGGMPPWYNAKLTLLALPS-------VIFAGERVPV 180
+ S + + +Y+GG+P Y + S + V +
Sbjct: 119 ASSQTIS---PKKADILDVVGILYVGGLPINYTTRRIGPVTYSLDGCVRNLHMEQAPVDL 175
Query: 181 WS 182
Sbjct: 176 DQ 177
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 185
Score = 86.8 bits (214), Expect = 1e-21
Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 8/133 (6%)
Query: 35 DSYAQLHK-WNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGS 93
+A+ + L+ +E EF+T +P G++L D I++++ L + G+
Sbjct: 11 TGFAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGVSSQKM-DGMGIEMIDEKLMFHVDNGA 69
Query: 94 GAQIL----TVGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHVTSNSW 149
G + + +G WH V K+ + L VD S +N
Sbjct: 70 GRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSAST--SADTNDP 127
Query: 150 VYIGGMPPWYNAK 162
V++GG P N
Sbjct: 128 VFVGGFPGGLNQF 140
>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 195
Score = 85.0 bits (209), Expect = 6e-21
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 3/132 (2%)
Query: 29 MLDGSQDSYAQLHKWNAALNGSLELEFKTEQPNGLILYT-DDGGTYDFFEIKLVEGALRL 87
Y A + EL KTE GLIL++ D+ + +V+G +++
Sbjct: 24 TKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGKGLERSDYIALAIVDGFVQM 83
Query: 88 RYNLGSGAQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHVTSN 147
Y+LGS +L +N HW ++ R + SL V N S + ++
Sbjct: 84 MYDLGSKPVVLRSTVPINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGAT--QLDTD 141
Query: 148 SWVYIGGMPPWY 159
+++GGM
Sbjct: 142 GALWLGGMERLS 153
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 170
Score = 82.9 bits (204), Expect = 2e-20
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 6/111 (5%)
Query: 50 SLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSGAQILTVGHDLNDGHW 109
S E +T P G+I Y D D+F + L +G ++ + + G L+DG W
Sbjct: 29 SSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRW 88
Query: 110 HSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGHVTSNSWVYIGGMPPWYN 160
H V VK + L VD R R + +GG+ +
Sbjct: 89 HQVEVKMEGDSVLLEVDGEEVLRL------RQVSGHPIMRIALGGLLFPAS 133
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 177
Score = 76.8 bits (188), Expect = 4e-18
Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 4/137 (2%)
Query: 27 SFMLDGSQDSYAQ-LHKWNAALNGSLELEFKTEQPNGLILYTD-DGGTYDFFEIKLVEGA 84
F G Q +Y + + L + F T Q +++ D G D+ E+ + +G
Sbjct: 7 IFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGK 66
Query: 85 LRLRYNLGS-GAQILTVGHDLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGH 143
+ +++N+G+ I +NDG +H VR R +L VD+
Sbjct: 67 IGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIF 126
Query: 144 VTSNSWVYIGGMPPWYN 160
S + + IGG
Sbjct: 127 -NSQATIIIGGKEQGQP 142
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6
{Human (Homo sapiens) [TaxId: 9606]}
Length = 218
Score = 67.6 bits (164), Expect = 2e-14
Identities = 22/148 (14%), Positives = 38/148 (25%), Gaps = 16/148 (10%)
Query: 25 GHSFMLDGSQDSYAQL-HKWNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEG 83
G F L + + + G++ + +
Sbjct: 22 GSGFAFYSLDYMRTPLDVGTESTWEVEVVAHIRPAADTGVLFALW-APDLRAVPLSVALV 80
Query: 84 ALRLRYNLGSGAQILTVGH--------DLNDGHWHSVRVKRRVEKTSLTVDNITQTRTSR 135
L +L V H + DG H V V R + +L VD
Sbjct: 81 DYHSTKKLKKQLVVLAVEHTALALMEIKVCDGQEHVVTVSLRDGEATLEVDGTRGQSEVS 140
Query: 136 GKEFRFG------HVTSNSWVYIGGMPP 157
+ + H+ S + GG+P
Sbjct: 141 AAQLQERLAVLERHLRSPVLTFAGGLPD 168
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 206
Score = 35.0 bits (80), Expect = 0.004
Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 5/90 (5%)
Query: 50 SLELEFKTEQPNG--LILYTDDGGTYDFFEIKLV--EGALRLRYNLGSGAQILTV-GHDL 104
L + + L+ + F + G L L + +++V L
Sbjct: 62 LLLASLRQMKKTRGTLLALERKDHSGQVFSVVSNGKAGTLDLSLTVQGKQHVVSVEEALL 121
Query: 105 NDGHWHSVRVKRRVEKTSLTVDNITQTRTS 134
G W S+ + + ++ L +D
Sbjct: 122 ATGQWKSITLFVQEDRAQLYIDCEKMENAE 151
>d1a0ca_ c.1.15.3 (A:) D-xylose isomerase {Clostridium
thermosulfurogenes, also known as Thermoanaerobacter
thermosulfurigenes [TaxId: 33950]}
Length = 437
Score = 27.1 bits (60), Expect = 2.4
Identities = 16/99 (16%), Positives = 28/99 (28%), Gaps = 14/99 (14%)
Query: 48 NGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGALRLRYNLGSGAQI-LTVGHDLND 106
G +E K ++P D A +Y+L ++ + H
Sbjct: 225 EGQFLIEPKPKEPTKHQYDFDVANVL----------AFLRKYDLDKYFKVNIEANHATLA 274
Query: 107 GH--WHSVRVKRRVEKTSLTVDNITQTRTSRGKEFRFGH 143
H H +R R ++D T +F
Sbjct: 275 FHDFQHELRYARINGVL-GSIDANTGDMLLGWDTDQFPT 312
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase
flavoprotein, N-terminal domain {Oligotropha
carboxidovorans, formerly Pseudomonas carboxydovorans
[TaxId: 40137]}
Length = 177
Score = 26.0 bits (56), Expect = 3.4
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 73 YDFFEIKLVEGALRLRYNLGSGAQILTVGHDLNDGHWHSVR 113
+D+ K + A+ L LG A+ L GH L +
Sbjct: 6 FDYHRPKSIADAVALLTKLGEDARPLAGGHSLIPIMKTRLA 46
>d2fhfa3 b.3.1.3 (A:32-162) Pullulanase PulA {Klebsiella
pneumoniae [TaxId: 573]}
Length = 131
Score = 25.7 bits (56), Expect = 3.5
Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 2/54 (3%)
Query: 31 DGSQDSYAQLHKWNAALNGSLELEFKTEQPNGLILYTDDGGTYDFFEIKLVEGA 84
+ L+ WN +L + + T ++ I L + +
Sbjct: 38 PADYATKN-LYLWNNETCDALSAPV-ADWNDVSTTPTGSDKYGPYWVIPLTKES 89
>d2atza1 d.264.1.3 (A:3-178) Hypothetical protein HP0184
{Helicobacter pylori [TaxId: 210]}
Length = 176
Score = 25.2 bits (55), Expect = 5.6
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 155 MPPWYNAKLTLLALPSVIFAGERVPVWSR 183
P +N +LALP +FA ER W++
Sbjct: 152 WPKEFN----ILALPYEVFAKERGSSWAK 176
>d1ji1a1 b.1.18.2 (A:1-122) Maltogenic amylase, N-terminal domain
N {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}
Length = 122
Score = 24.9 bits (54), Expect = 6.6
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 67 TDDGGTYDFFEIKLVEGALRLRY 89
D GT+D+++ + Y
Sbjct: 68 NDPTGTFDYWKGTIPASPSIKYY 90
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.442
Gapped
Lambda K H
0.267 0.0484 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 949,777
Number of extensions: 43446
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 16
Length of query: 244
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,268,006
Effective search space: 204148966
Effective search space used: 204148966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.4 bits)