BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17303
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OOE|A Chain A, Structural Genomics Of Caenorhabditis Elegans :
Dihydropteridine Reductase
pdb|1OOE|B Chain B, Structural Genomics Of Caenorhabditis Elegans :
Dihydropteridine Reductase
Length = 236
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 53/86 (61%)
Query: 74 WTQIETTVLAELKTILAGDKIDAVICXXXXXXXXXXXXKDFVKSADIMWRQSVWSSVLAA 133
WT+ E ++L + + L G ++D V C KDFVK+AD+M +QSVWSS +AA
Sbjct: 53 WTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAA 112
Query: 134 TIAANHLKPGGLVSLPGAKPALEGTP 159
+A HLKPGGL+ L GA A+ TP
Sbjct: 113 KLATTHLKPGGLLQLTGAAAAMGPTP 138
>pdb|1HDR|A Chain A, The Crystallographic Structure Of A Human Dihydropteridine
Reductase Nadh Binary Complex Expressed In Escherichia
Coli By A Cdna Constructed From Its Rat Homologue
Length = 244
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 54/86 (62%)
Query: 74 WTQIETTVLAELKTILAGDKIDAVICXXXXXXXXXXXXKDFVKSADIMWRQSVWSSVLAA 133
+T+ V AE+ +L +K+DA++C K K+ D+MW+QS+W+S +++
Sbjct: 60 FTEQADQVTAEVGKLLGEEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISS 119
Query: 134 TIAANHLKPGGLVSLPGAKPALEGTP 159
+A HLK GGL++L GAK AL+GTP
Sbjct: 120 HLATKHLKEGGLLTLAGAKAALDGTP 145
>pdb|1DIR|A Chain A, Crystal Structure Of A Monoclinic Form Of Dihydropteridine
Reductase From Rat Liver
pdb|1DIR|B Chain B, Crystal Structure Of A Monoclinic Form Of Dihydropteridine
Reductase From Rat Liver
pdb|1DIR|C Chain C, Crystal Structure Of A Monoclinic Form Of Dihydropteridine
Reductase From Rat Liver
pdb|1DIR|D Chain D, Crystal Structure Of A Monoclinic Form Of Dihydropteridine
Reductase From Rat Liver
pdb|1DHR|A Chain A, Crystal Structure Of Rat Liver Dihydropteridine Reductase
Length = 241
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 74 WTQIETTVLAELKTILAGDKIDAVICXXXXXXXXXXXXKDFVKSADIMWRQSVWSSVLAA 133
+T+ V AE+ +L K+DA++C K K+ D+MW+QS+W+S +++
Sbjct: 57 FTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISS 116
Query: 134 TIAANHLKPGGLVSLPGAKPALEGTP 159
+A HLK GGL++L GAK AL+GTP
Sbjct: 117 HLATKHLKEGGLLTLAGAKAALDGTP 142
>pdb|3ORF|A Chain A, Crystal Structure Of Dihydropteridine Reductase From
Dictyostelium Discoideum
pdb|3ORF|B Chain B, Crystal Structure Of Dihydropteridine Reductase From
Dictyostelium Discoideum
pdb|3ORF|C Chain C, Crystal Structure Of Dihydropteridine Reductase From
Dictyostelium Discoideum
pdb|3ORF|D Chain D, Crystal Structure Of Dihydropteridine Reductase From
Dictyostelium Discoideum
Length = 251
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 93 KIDAVICXXXXXXXXXXXXKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAK 152
K+D +C +F+KS M +++S+ +A I A L GGL L GA
Sbjct: 87 KVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGAS 146
Query: 153 PALEGT 158
AL T
Sbjct: 147 AALNRT 152
>pdb|3UCE|A Chain A, Crystal Structure Of A Small-Chain Dehydrogenase In
Complex With Nadph
pdb|3UCE|B Chain B, Crystal Structure Of A Small-Chain Dehydrogenase In
Complex With Nadph
pdb|3UCE|C Chain C, Crystal Structure Of A Small-Chain Dehydrogenase In
Complex With Nadph
pdb|3UCE|D Chain D, Crystal Structure Of A Small-Chain Dehydrogenase In
Complex With Nadph
pdb|3UCF|A Chain A, Crystal Structure Of A Small-chain Dehydrogenase
pdb|3UCF|B Chain B, Crystal Structure Of A Small-chain Dehydrogenase
pdb|3UCF|C Chain C, Crystal Structure Of A Small-chain Dehydrogenase
pdb|3UCF|D Chain D, Crystal Structure Of A Small-chain Dehydrogenase
Length = 223
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 115 VKSADIMWRQSVWSSVLAATIAANHLKPGGLVSL 148
V A + W +VLAA A +LK GG ++L
Sbjct: 81 VTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITL 114
>pdb|1R8X|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8X|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8Y|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|C Chain C, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|D Chain D, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|E Chain E, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|F Chain F, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|G Chain G, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|H Chain H, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
Length = 292
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 74 WTQIETTVLAELKTILAGDKIDAVICXXXXXXXXXXXXKDFVKSADIMWRQSVWSSVLAA 133
W E L K +L+GD DAVIC F D QS LA
Sbjct: 110 WVIEEANWLTLDKDVLSGDGFDAVIC----------LGNSFAHLPDCKGDQS--EHRLAL 157
Query: 134 TIAANHLKPGGLV 146
A+ ++PGGL+
Sbjct: 158 KNIASMVRPGGLL 170
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 26.2 bits (56), Expect = 8.1, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 123 RQSVWSSVLAATIAANHLKPGGLVSL---PGAK 152
R WS +A T+ A ++PG V+L PGA+
Sbjct: 65 RLDAWSDAVARTLLAEGVRPGDRVALRMSPGAE 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,287,342
Number of Sequences: 62578
Number of extensions: 84480
Number of successful extensions: 111
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 11
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)