BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17303
(159 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P09417|DHPR_HUMAN Dihydropteridine reductase OS=Homo sapiens GN=QDPR PE=1 SV=2
Length = 244
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 64/86 (74%)
Query: 74 WTQIETTVLAELKTILAGDKIDAVICVAGGWAVGNAAAKDFVKSADIMWRQSVWSSVLAA 133
+T+ V AE+ +L +K+DA++CVAGGWA GNA +K K+ D+MW+QS+W+S +++
Sbjct: 60 FTEQADQVTAEVGKLLGEEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISS 119
Query: 134 TIAANHLKPGGLVSLPGAKPALEGTP 159
+A HLK GGL++L GAK AL+GTP
Sbjct: 120 HLATKHLKEGGLLTLAGAKAALDGTP 145
>sp|Q3T0Z7|DHPR_BOVIN Dihydropteridine reductase OS=Bos taurus GN=QDPR PE=2 SV=1
Length = 242
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 64/86 (74%)
Query: 74 WTQIETTVLAELKTILAGDKIDAVICVAGGWAVGNAAAKDFVKSADIMWRQSVWSSVLAA 133
+T+ V AE+ +L +K+DA++CVAGGWA GNA +K K+ D+MW+QSVW+S +++
Sbjct: 58 FTEQADQVTAEVGKLLGTEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSVWTSTISS 117
Query: 134 TIAANHLKPGGLVSLPGAKPALEGTP 159
+A HLK GGL++L GA+ AL+GTP
Sbjct: 118 HLATKHLKEGGLLTLAGARAALDGTP 143
>sp|P11348|DHPR_RAT Dihydropteridine reductase OS=Rattus norvegicus GN=Qdpr PE=1 SV=1
Length = 241
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 63/86 (73%)
Query: 74 WTQIETTVLAELKTILAGDKIDAVICVAGGWAVGNAAAKDFVKSADIMWRQSVWSSVLAA 133
+T+ V AE+ +L K+DA++CVAGGWA GNA +K K+ D+MW+QS+W+S +++
Sbjct: 57 FTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISS 116
Query: 134 TIAANHLKPGGLVSLPGAKPALEGTP 159
+A HLK GGL++L GAK AL+GTP
Sbjct: 117 HLATKHLKEGGLLTLAGAKAALDGTP 142
>sp|Q8MJ30|DHPR_PIG Dihydropteridine reductase OS=Sus scrofa GN=QDPR PE=2 SV=1
Length = 243
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 64/86 (74%)
Query: 74 WTQIETTVLAELKTILAGDKIDAVICVAGGWAVGNAAAKDFVKSADIMWRQSVWSSVLAA 133
+T+ V AE+ +L +K+DA++CVAGGWA GNA +K K+ D+MW+QS+W+S +++
Sbjct: 59 FTEQADQVTAEVGKLLGTEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISS 118
Query: 134 TIAANHLKPGGLVSLPGAKPALEGTP 159
+A HLK GGL++L GAK AL+GTP
Sbjct: 119 HLATKHLKEGGLLTLAGAKAALDGTP 144
>sp|Q8BVI4|DHPR_MOUSE Dihydropteridine reductase OS=Mus musculus GN=Qdpr PE=1 SV=2
Length = 241
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 63/86 (73%)
Query: 74 WTQIETTVLAELKTILAGDKIDAVICVAGGWAVGNAAAKDFVKSADIMWRQSVWSSVLAA 133
+T+ V A++ +L K+DA++CVAGGWA GNA +K K+ D+MW+QS+W+S +++
Sbjct: 57 FTEQADQVTADVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDMMWKQSMWTSTISS 116
Query: 134 TIAANHLKPGGLVSLPGAKPALEGTP 159
+A HLK GGL++L GAK AL+GTP
Sbjct: 117 HLATKHLKEGGLLTLAGAKAALDGTP 142
>sp|Q86A17|DHPR_DICDI Dihydropteridine reductase OS=Dictyostelium discoideum GN=qdpr PE=1
SV=1
Length = 231
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 93 KIDAVICVAGGWAVGNAAAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAK 152
K+D +C AGGW+ GNA++ +F+KS M +++S+ +A I A L GGL L GA
Sbjct: 67 KVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGAS 126
Query: 153 PALEGT 158
AL T
Sbjct: 127 AALNRT 132
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 39 KIDAVICVAGGWAGGNAAAKDFVKS 63
K+D +C AGGW+GGNA++ +F+KS
Sbjct: 67 KVDTFVCAAGGWSGGNASSDEFLKS 91
>sp|Q2SUW0|RLME_BURTA Ribosomal RNA large subunit methyltransferase E OS=Burkholderia
thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
CIP 106301) GN=rlmE PE=3 SV=1
Length = 220
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 17/71 (23%)
Query: 78 ETTVLAELKTILAGDKIDAVICVA----GGWAVGNAAAKDFVKSADIMWRQSVWSSVLAA 133
E TVL +L+ +LAG +D VI G AV +AA + V LA
Sbjct: 111 EETVLHQLEEVLAGRSVDLVISDMAPNLSGVAVADAARIEHV-------------CDLAL 157
Query: 134 TIAANHLKPGG 144
A NHLKP G
Sbjct: 158 EFAQNHLKPDG 168
>sp|A1K598|RLME_AZOSB Ribosomal RNA large subunit methyltransferase E OS=Azoarcus sp.
(strain BH72) GN=rlmE PE=3 SV=1
Length = 205
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 78 ETTVLAELKTILAGDKIDAVICVAGGWAVGNAAAKDFVKSADIMWRQSVWSSVLAATIAA 137
E VLAEL++ LAG +D V+ + A + A + +S++ LA A
Sbjct: 99 EDAVLAELESRLAGAAVDLVL---------SDMAPNLSGVATVDQARSIYLCELALDFAR 149
Query: 138 NHLKPGG 144
HLKPGG
Sbjct: 150 RHLKPGG 156
>sp|A4G4B0|RLME_HERAR Ribosomal RNA large subunit methyltransferase E OS=Herminiimonas
arsenicoxydans GN=rlmE PE=3 SV=1
Length = 214
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 78 ETTVLAELKTILAGDKIDAVICVAGGWAVGNAAAKDFVKSADIMWRQSVWSSVLAATIAA 137
E VL +L+ +LAG K+D V+ G A A D + DI+ LA A
Sbjct: 105 EQNVLEQLEVVLAGRKVDLVLSDMAPNLSGIAVA-DAARMMDIIE--------LAIDFAQ 155
Query: 138 NHLKPGG 144
+H+KP G
Sbjct: 156 HHMKPSG 162
>sp|Q5P1G0|RLME_AROAE Ribosomal RNA large subunit methyltransferase E OS=Aromatoleum
aromaticum (strain EbN1) GN=rlmE PE=3 SV=1
Length = 207
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 78 ETTVLAELKTILAGDKIDAVICVAGGWAVGNAAAKDFVKSADIMWRQSVWSSVLAATIAA 137
E VLAEL++ L G +D V+ N + D A +S++ LA A
Sbjct: 99 EEPVLAELESRLGGLPVDVVLSDM----APNMSGIDTTDQA-----RSIYLGELALEFAG 149
Query: 138 NHLKPGG 144
+HLKPGG
Sbjct: 150 HHLKPGG 156
>sp|B4RK82|RLME_NEIG2 Ribosomal RNA large subunit methyltransferase E OS=Neisseria
gonorrhoeae (strain NCCP11945) GN=rlmE PE=3 SV=1
Length = 206
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 78 ETTVLAELKTILAGDKIDAVICVAGGWAVGNAAAKDFVKSADIMWRQSVWSSVLAATIAA 137
E VLA+ +T+L +D VIC GNA + +S + LA A+
Sbjct: 100 ENDVLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQ---------ARSFYLCELALDFAS 150
Query: 138 NHLKPGG 144
HLK GG
Sbjct: 151 QHLKTGG 157
>sp|Q5F9L0|RLME_NEIG1 Ribosomal RNA large subunit methyltransferase E OS=Neisseria
gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rlmE PE=3
SV=1
Length = 206
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 78 ETTVLAELKTILAGDKIDAVICVAGGWAVGNAAAKDFVKSADIMWRQSVWSSVLAATIAA 137
E VLA+ +T+L +D VIC GNA + +S + LA A+
Sbjct: 100 ENDVLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQ---------ARSFYLCELALDFAS 150
Query: 138 NHLKPGG 144
HLK GG
Sbjct: 151 QHLKTGG 157
>sp|Q7DDL2|RLME_NEIMB Ribosomal RNA large subunit methyltransferase E OS=Neisseria
meningitidis serogroup B (strain MC58) GN=rlmE PE=3 SV=1
Length = 206
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 78 ETTVLAELKTILAGDKIDAVICVAGGWAVGNAAAKDFVKSADIMWRQSVWSSVLAATIAA 137
E VLA+ +T+L +D VIC GNA + +S + LA A+
Sbjct: 100 ENDVLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQ---------ARSFYLCELALDFAS 150
Query: 138 NHLKPGG 144
HLK GG
Sbjct: 151 QHLKTGG 157
>sp|Q9JQX5|RLME_NEIMA Ribosomal RNA large subunit methyltransferase E OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=rlmE PE=3 SV=1
Length = 206
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 78 ETTVLAELKTILAGDKIDAVICVAGGWAVGNAAAKDFVKSADIMWRQSVWSSVLAATIAA 137
E VLA+ +T+L +D VIC GNA + +S + LA A+
Sbjct: 100 ENDVLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQ---------ARSFYLCELALDFAS 150
Query: 138 NHLKPGG 144
HLK GG
Sbjct: 151 QHLKTGG 157
>sp|A9M3N1|RLME_NEIM0 Ribosomal RNA large subunit methyltransferase E OS=Neisseria
meningitidis serogroup C (strain 053442) GN=rlmE PE=3
SV=1
Length = 206
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 78 ETTVLAELKTILAGDKIDAVICVAGGWAVGNAAAKDFVKSADIMWRQSVWSSVLAATIAA 137
E VLA+ +T+L +D VIC GNA + +S + LA A+
Sbjct: 100 ENDVLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQ---------ARSFYLCELALDFAS 150
Query: 138 NHLKPGG 144
HLK GG
Sbjct: 151 QHLKTGG 157
>sp|Q7VRP6|RL7_BLOFL 50S ribosomal protein L7/L12 OS=Blochmannia floridanus GN=rplL PE=3
SV=1
Length = 126
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 53 GNAAAKDFVKSADNTLIPLLFWTQIETTVLAELKTILAGDKIDAVICVAGGWAVGNAAAK 112
G +AA + S +N ++ TQ+E T + + + G+KI + V +G AK
Sbjct: 32 GVSAASSHISSVEN-VVTESESTQVEQTEFTVILSSIGGNKIPVIKAVRSITGLGLKEAK 90
Query: 113 DFVKSADIMWRQSV 126
D V+SA + ++SV
Sbjct: 91 DLVESAPVTLKESV 104
>sp|Q5PAE9|GPMI_ANAMM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Anaplasma marginale (strain St. Maries) GN=gpmI PE=3
SV=2
Length = 494
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 97 VICVAGGWAVGNAAAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAK 152
V+C+ GW GN D + +A R+ W SV++ ++ G V LP A+
Sbjct: 7 VLCILDGWGNGNGDECDAIHAA----RKPFWESVVSGCPRSSLSASGEDVGLPAAQ 58
>sp|Q63V86|RLME_BURPS Ribosomal RNA large subunit methyltransferase E OS=Burkholderia
pseudomallei (strain K96243) GN=rlmE PE=3 SV=1
Length = 220
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 17/71 (23%)
Query: 78 ETTVLAELKTILAGDKIDAVICVA----GGWAVGNAAAKDFVKSADIMWRQSVWSSVLAA 133
E +VL +L+ +LAG +D VI G AV +AA + V LA
Sbjct: 111 EESVLHQLEEVLAGRAVDLVISDMAPNLSGVAVADAARIEHV-------------CDLAL 157
Query: 134 TIAANHLKPGG 144
A NHLKP G
Sbjct: 158 EFAQNHLKPDG 168
>sp|A3N853|RLME_BURP6 Ribosomal RNA large subunit methyltransferase E OS=Burkholderia
pseudomallei (strain 668) GN=rlmE PE=3 SV=1
Length = 220
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 17/71 (23%)
Query: 78 ETTVLAELKTILAGDKIDAVICVA----GGWAVGNAAAKDFVKSADIMWRQSVWSSVLAA 133
E +VL +L+ +LAG +D VI G AV +AA + V LA
Sbjct: 111 EESVLHQLEEVLAGRAVDLVISDMAPNLSGVAVADAARIEHV-------------CDLAL 157
Query: 134 TIAANHLKPGG 144
A NHLKP G
Sbjct: 158 EFAQNHLKPDG 168
>sp|Q3JTT5|RLME_BURP1 Ribosomal RNA large subunit methyltransferase E OS=Burkholderia
pseudomallei (strain 1710b) GN=rlmE PE=3 SV=2
Length = 220
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 17/71 (23%)
Query: 78 ETTVLAELKTILAGDKIDAVICVA----GGWAVGNAAAKDFVKSADIMWRQSVWSSVLAA 133
E +VL +L+ +LAG +D VI G AV +AA + V LA
Sbjct: 111 EESVLHQLEEVLAGRAVDLVISDMAPNLSGVAVADAARIEHV-------------CDLAL 157
Query: 134 TIAANHLKPGG 144
A NHLKP G
Sbjct: 158 EFAQNHLKPDG 168
>sp|A3NTW3|RLME_BURP0 Ribosomal RNA large subunit methyltransferase E OS=Burkholderia
pseudomallei (strain 1106a) GN=rlmE PE=3 SV=1
Length = 220
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 17/71 (23%)
Query: 78 ETTVLAELKTILAGDKIDAVICVA----GGWAVGNAAAKDFVKSADIMWRQSVWSSVLAA 133
E +VL +L+ +LAG +D VI G AV +AA + V LA
Sbjct: 111 EESVLHQLEEVLAGRAVDLVISDMAPNLSGVAVADAARIEHV-------------CDLAL 157
Query: 134 TIAANHLKPGG 144
A NHLKP G
Sbjct: 158 EFAQNHLKPDG 168
>sp|A1V319|RLME_BURMS Ribosomal RNA large subunit methyltransferase E OS=Burkholderia
mallei (strain SAVP1) GN=rlmE PE=3 SV=2
Length = 220
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 17/71 (23%)
Query: 78 ETTVLAELKTILAGDKIDAVICVA----GGWAVGNAAAKDFVKSADIMWRQSVWSSVLAA 133
E +VL +L+ +LAG +D VI G AV +AA + V LA
Sbjct: 111 EESVLHQLEEVLAGRAVDLVISDMAPNLSGVAVADAARIEHV-------------CDLAL 157
Query: 134 TIAANHLKPGG 144
A NHLKP G
Sbjct: 158 EFAQNHLKPDG 168
>sp|Q62L80|RLME_BURMA Ribosomal RNA large subunit methyltransferase E OS=Burkholderia
mallei (strain ATCC 23344) GN=rlmE PE=3 SV=1
Length = 220
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 17/71 (23%)
Query: 78 ETTVLAELKTILAGDKIDAVICVA----GGWAVGNAAAKDFVKSADIMWRQSVWSSVLAA 133
E +VL +L+ +LAG +D VI G AV +AA + V LA
Sbjct: 111 EESVLHQLEEVLAGRAVDLVISDMAPNLSGVAVADAARIEHV-------------CDLAL 157
Query: 134 TIAANHLKPGG 144
A NHLKP G
Sbjct: 158 EFAQNHLKPDG 168
>sp|A2S3Q7|RLME_BURM9 Ribosomal RNA large subunit methyltransferase E OS=Burkholderia
mallei (strain NCTC 10229) GN=rlmE PE=3 SV=1
Length = 220
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 17/71 (23%)
Query: 78 ETTVLAELKTILAGDKIDAVICVA----GGWAVGNAAAKDFVKSADIMWRQSVWSSVLAA 133
E +VL +L+ +LAG +D VI G AV +AA + V LA
Sbjct: 111 EESVLHQLEEVLAGRAVDLVISDMAPNLSGVAVADAARIEHV-------------CDLAL 157
Query: 134 TIAANHLKPGG 144
A NHLKP G
Sbjct: 158 EFAQNHLKPDG 168
>sp|A3MIQ3|RLME_BURM7 Ribosomal RNA large subunit methyltransferase E OS=Burkholderia
mallei (strain NCTC 10247) GN=rlmE PE=3 SV=1
Length = 220
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 17/71 (23%)
Query: 78 ETTVLAELKTILAGDKIDAVICVA----GGWAVGNAAAKDFVKSADIMWRQSVWSSVLAA 133
E +VL +L+ +LAG +D VI G AV +AA + V LA
Sbjct: 111 EESVLHQLEEVLAGRAVDLVISDMAPNLSGVAVADAARIEHV-------------CDLAL 157
Query: 134 TIAANHLKPGG 144
A NHLKP G
Sbjct: 158 EFAQNHLKPDG 168
>sp|O34851|LDC_BACSU Probable murein peptide carboxypeptidase OS=Bacillus subtilis
(strain 168) GN=ykfA PE=2 SV=2
Length = 319
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 28 LAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADNTLI---PLLFWTQIETTVL 82
LA+L + D++ AV+C GG+ G AA D +LI P +FW + T L
Sbjct: 69 LADLHEMFRDDEVKAVLCACGGFGTGRIAA-----GIDFSLIRKHPKIFWGYSDITFL 121
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 82 LAELKTILAGDKIDAVICVAGGWAVGN-AAAKDF---VKSADIMW 122
LA+L + D++ AV+C GG+ G AA DF K I W
Sbjct: 69 LADLHEMFRDDEVKAVLCACGGFGTGRIAAGIDFSLIRKHPKIFW 113
>sp|C7Z622|3DHQ2_NECH7 Catabolic 3-dehydroquinase 2 OS=Nectria haematococca (strain
77-13-4 / ATCC MYA-4622 / FGSC 9596 / MPVI) GN=qutE2
PE=3 SV=1
Length = 153
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 19 FQCSSETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADNTLIPL--LFWTQ 76
FQ +SE ++ + A +IDA+I AG + + A +D + D IP + T
Sbjct: 50 FQANSEGAIVDRIHA--ARGEIDAIIINAGAYTHTSVAIRDALTGVD---IPFVEIHITN 104
Query: 77 IETTVLAELKTILAGDKIDAVIC 99
+ T + L DK +AVIC
Sbjct: 105 VHTREAFRHHSFLC-DKAEAVIC 126
>sp|B9DUV7|MURD_STRU0 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
uberis (strain ATCC BAA-854 / 0140J) GN=murD PE=3 SV=1
Length = 453
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 19/108 (17%)
Query: 18 FFQCSSETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADNTLIPLLFWTQI 77
F+ S T +LA + L+G + VI +AGG GNA +TLIP + +
Sbjct: 325 FYNDSKSTNILA-CQKALSGFDNNKVILIAGGLDRGNAF---------DTLIPDIKGLK- 373
Query: 78 ETTVLAELKTILAGDKIDAVICVAGGWAVGNAAAKDFVKSADIMWRQS 125
K IL G+ + + A VG AKD + I + Q+
Sbjct: 374 --------KMILLGESAEKMKEAAERAGVGYLEAKDVADATRIAFEQA 413
>sp|Q48FD0|TOLB_PSE14 Protein TolB OS=Pseudomonas syringae pv. phaseolicola (strain
1448A / Race 6) GN=tolB PE=3 SV=1
Length = 433
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 21 CSSETTVLAELKTIL---AGDKIDAVICVAGGWAGGNAAAKDFVKSADNTLIPLLFWTQI 77
C + V AE K IL D+ + V GW GGN +D + N L ++ I
Sbjct: 13 CFASAMVSAEEKNILVTSGSDRAAPIAVVPFGWQGGNVLPEDMAEIVSNDLRNSGYYAPI 72
Query: 78 ETTVLAELKT 87
+ L T
Sbjct: 73 PKQNMISLPT 82
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,703,817
Number of Sequences: 539616
Number of extensions: 2084628
Number of successful extensions: 6044
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 6022
Number of HSP's gapped (non-prelim): 56
length of query: 159
length of database: 191,569,459
effective HSP length: 108
effective length of query: 51
effective length of database: 133,290,931
effective search space: 6797837481
effective search space used: 6797837481
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)