RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17303
(159 letters)
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 61.9 bits (151), Expect = 1e-12
Identities = 47/86 (54%), Positives = 64/86 (74%)
Query: 74 WTQIETTVLAELKTILAGDKIDAVICVAGGWAVGNAAAKDFVKSADIMWRQSVWSSVLAA 133
WT+ E ++L + + L G ++D V CVAGGWA G+A++KDFVK+AD+M +QSVWSS +AA
Sbjct: 53 WTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAA 112
Query: 134 TIAANHLKPGGLVSLPGAKPALEGTP 159
+A HLKPGGL+ L GA A+ TP
Sbjct: 113 KLATTHLKPGGLLQLTGAAAAMGPTP 138
Score = 33.8 bits (78), Expect = 0.015
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 26 TVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADNTL 68
++L + + L G ++D V CVAGGWAGG+A++KDFVK+AD +
Sbjct: 59 SILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMI 101
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 56.9 bits (138), Expect = 1e-10
Identities = 43/86 (50%), Positives = 63/86 (73%)
Query: 74 WTQIETTVLAELKTILAGDKIDAVICVAGGWAVGNAAAKDFVKSADIMWRQSVWSSVLAA 133
+T+ V AE+ +L K+DA++CVAGGWA GNA +K K+ D+MW+QS+W+S +++
Sbjct: 57 FTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISS 116
Query: 134 TIAANHLKPGGLVSLPGAKPALEGTP 159
+A HLK GGL++L GAK AL+GTP
Sbjct: 117 HLATKHLKEGGLLTLAGAKAALDGTP 142
Score = 31.9 bits (73), Expect = 0.064
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 27 VLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADNTL 68
V AE+ +L K+DA++CVAGGWAGGNA +K K+ D
Sbjct: 64 VTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMW 105
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 56.9 bits (138), Expect = 1e-10
Identities = 28/67 (41%), Positives = 40/67 (59%)
Query: 93 KIDAVICVAGGWAVGNAAAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAK 152
K+D +C AGGW+ GNA++ +F+KS M +++S+ +A I A L GGL L GA
Sbjct: 87 KVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGAS 146
Query: 153 PALEGTP 159
AL T
Sbjct: 147 AALNRTS 153
Score = 31.1 bits (71), Expect = 0.11
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 22 SSETTVLAELKTILA-GDKIDAVICVAGGWAGGNAAAKDFVKSADNTL 68
S E + + ++ I + K+D +C AGGW+GGNA++ +F+KS +
Sbjct: 69 SGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMI 116
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for
structural genomi infectious diseases, csgid, serine
peptidase S66; 1.95A {Bacillus anthracis}
Length = 331
Score = 31.8 bits (73), Expect = 0.061
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 13/50 (26%)
Query: 28 LAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADNTLIPLLFWTQI 77
+ +L + A++ GG+ N+ N L+ L + I
Sbjct: 67 VQDLHEAFRDPNVKAILTTLGGY---NS----------NGLLKYLDYDLI 103
Score = 29.9 bits (68), Expect = 0.34
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 82 LAELKTILAGDKIDAVICVAGGW 104
+ +L + A++ GG+
Sbjct: 67 VQDLHEAFRDPNVKAILTTLGGY 89
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB:
3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Length = 371
Score = 31.7 bits (72), Expect = 0.087
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 13/50 (26%)
Query: 28 LAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADNTLIPLLFWTQI 77
E ++ I ++ GG N+L+P L + I
Sbjct: 98 AQEFNELVYNPDITCIMSTIGGDNS-------------NSLLPFLDYDAI 134
Score = 30.2 bits (68), Expect = 0.22
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 82 LAELKTILAGDKIDAVICVAGGW 104
E ++ I ++ GG
Sbjct: 98 AQEFNELVYNPDITCIMSTIGGD 120
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF
protein, center for structu genomics of infectious
diseases, immune system; 1.50A {Bacillus anthracis} PDB:
3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Length = 336
Score = 30.4 bits (69), Expect = 0.20
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 13/50 (26%)
Query: 28 LAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADNTLIPLLFWTQI 77
EL ++ + ++ GG N+L+P + +
Sbjct: 68 AKELNALIRNPNVSCIMSTIGGMNS-------------NSLLPYIDYDAF 104
Score = 30.0 bits (68), Expect = 0.28
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 82 LAELKTILAGDKIDAVICVAGGW 104
EL ++ + ++ GG
Sbjct: 68 AKELNALIRNPNVSCIMSTIGGM 90
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.76A {Homo sapiens}
Length = 196
Score = 30.2 bits (69), Expect = 0.21
Identities = 9/72 (12%), Positives = 23/72 (31%), Gaps = 19/72 (26%)
Query: 78 ETTVLAELKTILAGDKIDAVIC-----VAGGWAVGNAAAKDFVKSADIMWRQSVWSSVLA 132
+ + +L G + D ++ G + D + + +
Sbjct: 82 DPRTSQRILEVLPGRRADVILSDMAPNATGFRDL------DHDRLISL--------CLTL 127
Query: 133 ATIAANHLKPGG 144
++ + L+PGG
Sbjct: 128 LSVTPDILQPGG 139
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock
proteins, 23S ribosomal RNA; HET: SAM; 1.50A
{Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Length = 180
Score = 30.1 bits (69), Expect = 0.21
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 19/72 (26%)
Query: 78 ETTVLAELKTILAGDKIDAVIC-----VAGGWAVGNAAAKDFVKSADIMWRQSVWSSVLA 132
+ V+ L + K+ V+ ++G AV D ++ + LA
Sbjct: 73 DELVMKALLERVGDSKVQVVMSDMAPNMSGTPAV------DIPRAMYL--------VELA 118
Query: 133 ATIAANHLKPGG 144
+ + L PGG
Sbjct: 119 LEMCRDVLAPGG 130
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.70A {Plasmodium falciparum}
Length = 201
Score = 29.1 bits (66), Expect = 0.49
Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 20/92 (21%)
Query: 59 DFVKSADNTLIPLLFWTQIET-TVLAELKTILAGDKIDAVIC-----VAGGWAVGNAAAK 112
+ K N + + + + +V +LK IL KID ++ G
Sbjct: 71 EIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKID------ 124
Query: 113 DFVKSADIMWRQSVWSSVLAATIAANHLKPGG 144
D + S ++ ++ ++ GG
Sbjct: 125 DHLNSCEL--------TLSITHFMEQYINIGG 148
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT
structure initiative, midwest center for structural
genomic unknown function; HET: TLA PEG; 1.10A
{Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB:
1zrs_A 2aum_A 2aun_A
Length = 311
Score = 28.9 bits (65), Expect = 0.61
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 28 LAELKTILAGDKIDAVICVAGGW 50
L +L I AV C+ GG+
Sbjct: 69 LEDLHNAFDMPDITAVWCLRGGY 91
Score = 28.9 bits (65), Expect = 0.61
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 82 LAELKTILAGDKIDAVICVAGGW 104
L +L I AV C+ GG+
Sbjct: 69 LEDLHNAFDMPDITAVWCLRGGY 91
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.64
Identities = 29/220 (13%), Positives = 57/220 (25%), Gaps = 101/220 (45%)
Query: 13 LYVLIFF--QCSSETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADNTL-- 68
L + F Q +++ EL+ + + + D +K + TL
Sbjct: 156 LVAI--FGGQGNTDDY-FEELRDL---------------YQTYHVLVGDLIKFSAETLSE 197
Query: 69 ----------------------------------------IPLLFWTQ-----IETTVL- 82
PL+ Q + +L
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 83 ---AELKTILAGDKIDAVICVAGGWAVGNAAA-------KDFVKSADIM-----W----- 122
EL++ L G A G + A A + F S +
Sbjct: 258 FTPGELRSYLKG----ATGHSQG---LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC 310
Query: 123 -----RQSVWSSVLAATIAANHLKPGGLVSLPG-AKPALE 156
S+ S+L ++ N P ++S+ + ++
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.1
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 11/33 (33%)
Query: 123 RQSVWSSVLAATIAANHLKPGGLVSLPGAKPAL 155
+Q++ L A+ LK L + + PAL
Sbjct: 19 KQAL--KKLQAS-----LK---LYA-DDSAPAL 40
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural
genomics, NIA national institute of allergy and
infectious diseases; HET: AMP; 1.58A {Streptococcus
pneumoniae} PDB: 4e94_A*
Length = 346
Score = 28.0 bits (62), Expect = 1.3
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 82 LAELKTILAGDKIDAVICVAGGW-AVGNAAAKDFVKSADIMWRQSVWSSVLAATIAANHL 140
+L + D ID ++C GG + +Q ++ T+ L
Sbjct: 62 AEDLIHAFSDDSIDMILCAIGGDDTYRLLPYLFENDQLQKVIKQKIFLGFSDTTMNHLML 121
Query: 141 KPGGLVSLPG 150
G+ + G
Sbjct: 122 HKLGIKTFYG 131
Score = 28.0 bits (62), Expect = 1.5
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 28 LAELKTILAGDKIDAVICVAGGW 50
+L + D ID ++C GG
Sbjct: 62 AEDLIHAFSDDSIDMILCAIGGD 84
>3g23_A Peptidase U61, LD-carboxypeptidase A; flavodoxin-like fold,
catalytic triad, merops S66 unassigned peptidases
family; HET: MSE; 1.89A {Novosphingobium
aromaticivorans}
Length = 274
Score = 27.2 bits (60), Expect = 2.3
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 28 LAELKTILAGDKIDAVICVAGGW 50
L+ D +AV V GG+
Sbjct: 57 LSAFLECANDDAFEAVWFVRGGY 79
Score = 27.2 bits (60), Expect = 2.3
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 82 LAELKTILAGDKIDAVICVAGGW 104
L+ D +AV V GG+
Sbjct: 57 LSAFLECANDDAFEAVWFVRGGY 79
>3poh_A Endo-beta-N-acetylglucosaminidase F1; TIM barrel, structural
genomics, joint center for structural genomics, JCSG;
1.55A {Bacteroides thetaiotaomicron}
Length = 451
Score = 27.2 bits (59), Expect = 2.9
Identities = 15/113 (13%), Positives = 26/113 (23%), Gaps = 30/113 (26%)
Query: 39 KIDAVICVAGGWAGG------NAAAKDFVKSADNTLIPL------LFW------------ 74
+ ++ + G AKDF +
Sbjct: 241 GVKVLLGLLGNHDITGLAQLSEQGAKDFAREVAQYCKAYNLDGVNYDDEYSNSPDLSNPS 300
Query: 75 -----TQIETTVLAELKTILAGDKIDAVICVAGGWAVGNAAAKDFVKSADIMW 122
T + E K + DK+ V + V D + DI+
Sbjct: 301 LTNPSTAAAARLCYETKQAM-PDKLVTVFDWGQMYGVATVDGVDAKEWIDIVV 352
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR,
TSAR, WHTH, DNA- transcription, transcription
regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A*
3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Length = 305
Score = 26.8 bits (60), Expect = 3.3
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 123 RQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGT 158
S + + T+ + L S+P T
Sbjct: 234 AHSDLLTTMPRTLYERNAFKDQLCSIPLQDALPNPT 269
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 26.9 bits (59), Expect = 3.5
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 12/77 (15%)
Query: 69 IPLLFWTQIETTVLAELKTILAGDKIDAVICVAGGWAVGNAAAKDFVKSADIMWRQSVWS 128
W E L K + AGD DAVIC+ GN+ F D QS
Sbjct: 106 PAFDKWVIEEANWLTLDKDVPAGDGFDAVICL------GNS----FAHLPDSKGDQSEHR 155
Query: 129 SVLAATIAANHLKPGGL 145
L A+ ++PGGL
Sbjct: 156 LALKN--IASMVRPGGL 170
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A
{Homo sapiens} PDB: 2xte_A 2xtd_A
Length = 90
Score = 24.7 bits (54), Expect = 6.8
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 128 SSVLAATIAANHLKPGGLVSL 148
S + + I + P L+S+
Sbjct: 32 SHISQSNINGTLVPPAALISI 52
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic
binding protein, galactose, GBP, sugar binding protein;
HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Length = 400
Score = 25.9 bits (57), Expect = 7.3
Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 13/114 (11%)
Query: 46 VAGGWAGGNAAA-----KDFVKSADN-----TLIPLLFWTQIETTVLAELKTILAGDKID 95
+ WAG A + + + + + + L GD D
Sbjct: 5 IFSWWAGDEGPALEALIRLYKQKYPGVEVINATVTGGAGVNARAVLKTRM---LGGDPPD 61
Query: 96 AVICVAGGWAVGNAAAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLP 149
AG +G + ++ ++RQ W + GG+ S+P
Sbjct: 62 TFQVHAGMELIGTWVVANRMEDLSALFRQEGWLQAFPKGLIDLISYKGGIWSVP 115
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division,
structural genomics, protein structure initiative, PSI;
HET: SAM; 1.45A {Thermoplasma volcanium}
Length = 191
Score = 25.6 bits (57), Expect = 7.6
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 22/75 (29%)
Query: 78 ETTVLAELKTIL---AGDKIDAVIC-----VAGGWAVGNAAAKDFVKSADIMWRQSVWSS 129
+ T+ ++ L +K+D V+ V+G + D S I
Sbjct: 73 KETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSR------DHAVSYQI--------G 118
Query: 130 VLAATIAANHLKPGG 144
IA +L+ GG
Sbjct: 119 QRVMEIAVRYLRNGG 133
>1edt_A Endo-beta-N-acetylglucosaminidase H, endo H; hydrolase
(glucosidase); 1.90A {Streptomyces plicatus} SCOP:
c.1.8.5 PDB: 1c90_A 1c8x_A 1c91_A 1c3f_A 1c92_A 1c8y_A
1c93_A
Length = 271
Score = 25.3 bits (55), Expect = 8.9
Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 79 TTVLAELKTILAGDKIDAVICVAGGWAVGNAAAKDFVKSADIMW 122
++ L+ + DKI ++ + + + D D W
Sbjct: 150 VHLVTALRANM-PDKIISLYNIGPAASRLSYGGVDVSDKFDYAW 192
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA
complex; HET: FOU; 2.05A {Escherichia coli}
Length = 217
Score = 25.2 bits (56), Expect = 8.9
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 141 KPGGLVSLPGAKP 153
KP GL+S+PG
Sbjct: 26 KPSGLLSVPGRLE 38
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 25.3 bits (56), Expect = 9.6
Identities = 7/67 (10%), Positives = 18/67 (26%), Gaps = 1/67 (1%)
Query: 93 KIDAVICVAGGWAVGNAAAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAK 152
K+DA++ G + + + + + + L G +L
Sbjct: 58 KVDAIVSATGSATFSPLTELT-PEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGI 116
Query: 153 PALEGTP 159
+
Sbjct: 117 MMEDPIV 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.415
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,425,959
Number of extensions: 137677
Number of successful extensions: 454
Number of sequences better than 10.0: 1
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 55
Length of query: 159
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 73
Effective length of database: 4,300,587
Effective search space: 313942851
Effective search space used: 313942851
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)