RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17303
         (159 letters)



>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC
          family {Brevibacterium sterolicum [TaxId: 1702]}
          Length = 370

 Score = 27.6 bits (60), Expect = 0.62
 Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 33 TILAGDKIDAVICVAGGWAGGNAAAK 58
          T+  GD++ A++ +  G+ G  AA +
Sbjct: 1  TLADGDRVPALV-IGSGYGGAVAALR 25


>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
           synthase) {Thermotoga maritima [TaxId: 2336]}
          Length = 293

 Score = 25.8 bits (56), Expect = 2.7
 Identities = 26/135 (19%), Positives = 42/135 (31%), Gaps = 18/135 (13%)

Query: 27  VLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADNTLIPLLFWTQIETTVLAELK 86
                       +IDA +   G   G  +     +K      + ++     ++ VL+  +
Sbjct: 147 TTGPEILKQMDYQIDAFVAGVGT-GGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQ 205

Query: 87  T---------------ILAGDKIDAVICVAGGWAVGNAAAKDFVKSADIMWRQSVWSSVL 131
                           IL    ID VI V    A     A+   K   ++   S  ++V 
Sbjct: 206 PGKHAIQGIGAGFVPKILDRSVIDEVITVEDEEAY--EMARYLAKKEGLLVGISSGANVA 263

Query: 132 AATIAANHLKPGGLV 146
           AA   A  L P   V
Sbjct: 264 AALKVAQKLGPDARV 278


>d1zl0a2 c.23.16.7 (A:3-169) LD-carboxypeptidase A, N-terminal
          domain {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 167

 Score = 25.3 bits (55), Expect = 3.4
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 28 LAELKTILAGDKIDAVICVAGGW 50
          L +L        I AV C+ GG+
Sbjct: 65 LEDLHNAFDMPDITAVWCLRGGY 87



 Score = 25.3 bits (55), Expect = 3.4
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 82  LAELKTILAGDKIDAVICVAGGW 104
           L +L        I AV C+ GG+
Sbjct: 65  LEDLHNAFDMPDITAVWCLRGGY 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0452    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 569,287
Number of extensions: 22886
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 9
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.3 bits)