BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17304
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E3X|A Chain A, Crystal Structure Of Russell's Viper Venom
Metalloproteinase
Length = 427
Score = 120 bits (300), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 79/115 (68%), Gaps = 2/115 (1%)
Query: 5 LCGNGVVDEDEDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICR 64
+CGN + +E E+CDCGS C ++PCCDA TCKLK ++C +G CC CK++ G +CR
Sbjct: 215 VCGNEIWEEGEECDCGSPANC--QNPCCDAATCKLKPGAECGNGLCCYQCKIKTAGTVCR 272
Query: 65 EAKTECDLPEWCTGTSGECPADEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIWG 119
A+ ECD+PE CTG S ECP D+ ++NG PC G+C+NG CP + QC ++G
Sbjct: 273 RARDECDVPEHCTGQSAECPRDQLQQNGKPCQNNRGYCYNGDCPIMRNQCISLFG 327
>pdb|3HDB|A Chain A, Crystal Structure Of Aahiv, A Metalloproteinase From Venom
Of Agkistrodon Acutus
Length = 417
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 76/115 (66%), Gaps = 2/115 (1%)
Query: 5 LCGNGVVDEDEDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICR 64
LCGN +++ E+CDCG+ + C ++PCCDA TCKLK SQC G CC+ CK R G CR
Sbjct: 211 LCGNELLEVGEECDCGTPENC--QNPCCDAATCKLKSGSQCGHGKCCEQCKFRTSGTECR 268
Query: 65 EAKTECDLPEWCTGTSGECPADEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIWG 119
+ +ECD E CTG S ECPAD F KNG PC G+C+NG CP + QC ++G
Sbjct: 269 ASMSECDPAEHCTGQSSECPADVFHKNGEPCLDNYGYCYNGNCPIMYHQCYALFG 323
>pdb|2ERO|A Chain A, Crystal Structure Of Vascular Apoptosis-inducing Protein-
1(orthorhombic Crystal Form)
pdb|2ERO|B Chain B, Crystal Structure Of Vascular Apoptosis-inducing Protein-
1(orthorhombic Crystal Form)
pdb|2ERP|A Chain A, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Inhibitor- Bound Form)
pdb|2ERP|B Chain B, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Inhibitor- Bound Form)
pdb|2ERQ|A Chain A, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Tetragonal Crystal Form)
pdb|2ERQ|B Chain B, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Tetragonal Crystal Form)
Length = 427
Score = 115 bits (287), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 77/115 (66%), Gaps = 3/115 (2%)
Query: 5 LCGNGVVDEDEDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICR 64
+CGN V+ E+CDCGS C +DPCCDA TCKL++ +QCA+G CCD C+ + G CR
Sbjct: 222 VCGNYFVEVGEECDCGSPRTC--RDPCCDATTCKLRQGAQCAEGLCCDQCRFKGAGTECR 279
Query: 65 EAKTECDLPEWCTGTSGECPADEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIWG 119
AK ECD+ + CTG S EC D F++NG PC G+C+NG CP + QC ++G
Sbjct: 280 AAKDECDMADVCTGRSAEC-TDRFQRNGQPCKNNNGYCYNGKCPIMADQCIALFG 333
>pdb|2DW0|A Chain A, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-1 Crystal)
pdb|2DW0|B Chain B, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-1 Crystal)
pdb|2DW1|A Chain A, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-2 Crystal)
pdb|2DW1|B Chain B, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-2 Crystal)
pdb|2DW2|A Chain A, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-5 Crystal)
pdb|2DW2|B Chain B, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-5 Crystal)
Length = 419
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 75/115 (65%), Gaps = 2/115 (1%)
Query: 5 LCGNGVVDEDEDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICR 64
+CGN +++ E+CDCG+ + C ++ CCDA TCKLK SQC G CC+ CK G CR
Sbjct: 213 VCGNELLEVGEECDCGTPENC--QNECCDAATCKLKSGSQCGHGDCCEQCKFSKSGTECR 270
Query: 65 EAKTECDLPEWCTGTSGECPADEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIWG 119
+ +ECD E CTG S ECPAD F KNG PC G+C+NG CP + QC +++G
Sbjct: 271 ASMSECDPAEHCTGQSSECPADVFHKNGQPCLDNYGYCYNGNCPIMYHQCYDLFG 325
>pdb|3DSL|B Chain B, The Three-Dimensional Structure Of Bothropasin, The Main
Hemorrhagic Factor From Bothrops Jararaca Venom.
pdb|3DSL|A Chain A, The Three-Dimensional Structure Of Bothropasin, The Main
Hemorrhagic Factor From Bothrops Jararaca Venom
Length = 419
Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Query: 5 LCGNGVVDEDEDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICR 64
+CGN +++ E+CDCG+ + C ++ CCDA TCKLK SQC G CC+ CK G CR
Sbjct: 213 VCGNELLEVGEECDCGTPENC--QNECCDAATCKLKSGSQCGHGDCCEQCKFSKSGTECR 270
Query: 65 EAKTECDLPEWCTGTSGECPADEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIWG 119
+ +ECD E CTG S ECPAD F KNG PC G+C+NG CP + QC ++G
Sbjct: 271 ASMSECDPAEHCTGQSSECPADVFHKNGQPCLDNYGYCYNGNCPIMYHQCYALFG 325
>pdb|3K7L|A Chain A, Structures Of Two Elapid Snake Venom Metalloproteases With
Distinct Activities Highlight The Disulfide Patterns In
The D Domain Of Adamalysin Family Proteins
Length = 422
Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 73/115 (63%), Gaps = 2/115 (1%)
Query: 5 LCGNGVVDEDEDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICR 64
+CGN V+ E+CDCGS +C + CC+A TCKL+ E+QC CC+ CK + CR
Sbjct: 219 ICGNYFVEVGEECDCGSPADC--QSACCNATTCKLQHEAQCDSEECCEKCKFKGARAECR 276
Query: 65 EAKTECDLPEWCTGTSGECPADEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIWG 119
AK +CDLPE CTG S ECP D F++NG PC G+C+NG CP + QC + G
Sbjct: 277 AAKDDCDLPELCTGQSAECPTDVFQRNGLPCQNNQGYCYNGKCPIMTNQCIALRG 331
>pdb|3G5C|A Chain A, Structural And Biochemical Studies On The Ectodomain Of
Human Adam22
pdb|3G5C|B Chain B, Structural And Biochemical Studies On The Ectodomain Of
Human Adam22
Length = 510
Score = 99.4 bits (246), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 6 CGNGVVDEDEDCDCGSIDEC-HEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICR 64
CGNG ++ E+CDCG+ EC E CC C L ++SQC+DG CC CK +P G +CR
Sbjct: 215 CGNGFIETGEECDCGTPAECVLEGAECCKK--CTLTQDSQCSDGLCCKKCKFQPMGTVCR 272
Query: 65 EAKTECDLPEWCTGTSGECPADEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIWG 119
EA +CD+ E C+G S +C + K +G C+ G CF G C T D QC+ IWG
Sbjct: 273 EAVNDCDIRETCSGNSSQCAPNIHKMDGYSCDGVQGICFGGRCKTRDRQCKYIWG 327
>pdb|3K7N|A Chain A, Structures Of Two Elapid Snake Venom Metalloproteases With
Distinct Activities Highlight The Disulfide Patterns In
The D Domain Of Adamalysin Family Proteins
Length = 397
Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 21/116 (18%)
Query: 5 LCGNGVVDEDEDCDCGSIDECHEKDPCCDAITCKLK-KESQCADGPCCDNCKLRPFGHIC 63
+CGN V+ E+CDCGS C + CC+A TC+ K E++C
Sbjct: 214 ICGNYFVEVGEECDCGSPQAC--QSACCNAATCQFKGAETEC------------------ 253
Query: 64 REAKTECDLPEWCTGTSGECPADEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIWG 119
R AK +CDLPE CTG S ECP D ++NG+PC +C+NG CPT+ QC + G
Sbjct: 254 RVAKDDCDLPELCTGQSAECPTDSLQRNGHPCQNNQSYCYNGTCPTLTNQCITLLG 309
>pdb|1L3X|A Chain A, Solution Structure Of Novel Disintegrin Salmosin
Length = 73
Score = 65.5 bits (158), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%), Gaps = 6/74 (8%)
Query: 15 EDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECDLPE 74
E+CDCGS +PCCDA TCKL++ +QCA+G CCD C+ G ICR A+ + DL +
Sbjct: 4 EECDCGS-----PGNPCCDAATCKLRQGAQCAEGLCCDQCRFMKEGTICRRARGD-DLDD 57
Query: 75 WCTGTSGECPADEF 88
+C G S CP + F
Sbjct: 58 YCNGISAGCPRNPF 71
>pdb|3C05|B Chain B, Crystal Structure Of Acostatin From Agkistrodon
Contortrix Contortrix
pdb|3C05|D Chain D, Crystal Structure Of Acostatin From Agkistrodon
Contortrix Contortrix
Length = 64
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 29 DPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECDLPEWCTGTSGECPADEF 88
+PCCDA TCKL SQCADG CCD CK G +CR A+ + DL ++C G S CP + F
Sbjct: 5 NPCCDAATCKLTTGSQCADGLCCDQCKFMKEGTVCRRARGD-DLDDYCNGISAGCPRNPF 63
>pdb|3C05|A Chain A, Crystal Structure Of Acostatin From Agkistrodon
Contortrix Contortrix
pdb|3C05|C Chain C, Crystal Structure Of Acostatin From Agkistrodon
Contortrix Contortrix
Length = 62
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 28 KDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECDLPEW-CTGTSGECPAD 86
K+PCCDA TCKL SQCA+G CCD CK G ICR A+ D P++ CTG SG+CP
Sbjct: 3 KNPCCDAATCKLTPGSQCAEGLCCDQCKFIKAGKICRRARG--DNPDYRCTGQSGDCPRK 60
Query: 87 EF 88
F
Sbjct: 61 HF 62
>pdb|2AO7|A Chain A, Adam10 Disintegrin And Cysteine- Rich Domain
Length = 192
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 59/112 (52%), Gaps = 12/112 (10%)
Query: 5 LCGNGVVDEDEDCDCGSIDECHEKDPCC------DAITCKLKKESQC--ADGPCCD-NCK 55
+CGNG+V++ E+CDCG D+C KD CC + CKLK QC + GPCC +C
Sbjct: 5 ICGNGMVEQGEECDCGYSDQC--KDECCYDANQPEGKKCKLKPGKQCSPSQGPCCTAHCA 62
Query: 56 LRPFGHICREAKTECDLPEWCTGTSGECPADEFKKNGNPCNMRTGFCFNGFC 107
+ CR+ ++C C G + CPA + K N CN T C NG C
Sbjct: 63 FKSKTEKCRD-DSDCAKEGICNGITALCPASDPKPNFTDCNRHTQVCINGQC 113
>pdb|1J2L|A Chain A, Crystal Structure Of The Disintegrin, Trimestatin
Length = 70
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 8/71 (11%)
Query: 15 EDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECDLP- 73
E+CDCGS +PCCDA TCKL+ +QCADG CCD C+ + ICR A+ D P
Sbjct: 2 EECDCGS-----PSNPCCDAATCKLRPGAQCADGLCCDQCRFKKKRTICRIARG--DFPD 54
Query: 74 EWCTGTSGECP 84
+ CTG S +CP
Sbjct: 55 DRCTGQSADCP 65
>pdb|3UCI|A Chain A, Crystal Structure Of Rhodostomin Arlddl Mutant
Length = 72
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 6/70 (8%)
Query: 15 EDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECDLPE 74
++CDC S + +PCCDA TCKL+ +QC +G CC+ CK G ICR A+ + DL +
Sbjct: 6 KECDCSSPE-----NPCCDAATCKLRPGAQCGEGLCCEQCKFSRAGKICRIARLD-DLDD 59
Query: 75 WCTGTSGECP 84
CTG S +CP
Sbjct: 60 RCTGQSADCP 69
>pdb|1FVL|A Chain A, The Nuclear Magnetic Resonance Solution Structure Of
Flavoridin, An Antagonist Of The Platelet Gp Iib-Iiia
Receptor
Length = 70
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 8/71 (11%)
Query: 15 EDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECDLP- 73
E+CDCGS +PCCDA TCKL+ +QCADG CCD C+ + ICR A+ D P
Sbjct: 2 EECDCGS-----PSNPCCDAATCKLRPGAQCADGLCCDQCRFKKKRTICRIARG--DFPD 54
Query: 74 EWCTGTSGECP 84
+ CTG S +CP
Sbjct: 55 DRCTGLSNDCP 65
>pdb|2PJI|A Chain A, Solution Structure Of Rhodostomin P48a Mutant
Length = 68
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 8/71 (11%)
Query: 15 EDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECDLP- 73
++CDC S + +PCCDA TCKL+ +QC +G CC+ CK G ICR A+ D+P
Sbjct: 2 KECDCSSPE-----NPCCDAATCKLRPGAQCGEGLCCEQCKFSRAGKICRIARG--DMPD 54
Query: 74 EWCTGTSGECP 84
+ CTG S +CP
Sbjct: 55 DRCTGQSADCP 65
>pdb|2LJV|A Chain A, Solution Structure Of Rhodostomin G50l Mutant
Length = 68
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 15 EDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECDLP- 73
++CDC S + +PCCDA TCKL+ +QC +G CC+ CK G ICR + D+P
Sbjct: 2 KECDCSSPE-----NPCCDAATCKLRPGAQCGEGLCCEQCKFSRAGKICRIPRL--DMPD 54
Query: 74 EWCTGTSGECP 84
+ CTG S +CP
Sbjct: 55 DRCTGQSADCP 65
>pdb|1Q7J|A Chain A, Structural Analysis Of Integrin Alpha Iib Beta 3-
Disintegrin With The Akgdwn Motif
Length = 68
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 15 EDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECDLPE 74
++CDC S + +PCCDA TCKL+ +QC +G CC+ CK G ICR AK + + +
Sbjct: 2 KECDCSSPE-----NPCCDAATCKLRPGAQCGEGLCCEQCKFSRAGKICRIAKGDWN-DD 55
Query: 75 WCTGTSGECP 84
CTG S +CP
Sbjct: 56 RCTGQSADCP 65
>pdb|1N4Y|A Chain A, Refined Structure Of Kistrin
pdb|2PJF|A Chain A, Solution Structure Of Rhodostomin
Length = 68
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 15 EDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECDLP- 73
++CDC S + +PCCDA TCKL+ +QC +G CC+ CK G ICR + D+P
Sbjct: 2 KECDCSSPE-----NPCCDAATCKLRPGAQCGEGLCCEQCKFSRAGKICRIPRG--DMPD 54
Query: 74 EWCTGTSGECP 84
+ CTG S +CP
Sbjct: 55 DRCTGQSADCP 65
>pdb|2PJG|A Chain A, Solution Structure Of Rhodostomin D51e Mutant
Length = 68
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 15 EDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECDLP- 73
++CDC S + +PCCDA TCKL+ +QC +G CC+ CK G ICR + E +P
Sbjct: 2 KECDCSSPE-----NPCCDAATCKLRPGAQCGEGLCCEQCKFSRAGKICRIPRGE--MPD 54
Query: 74 EWCTGTSGECP 84
+ CTG S +CP
Sbjct: 55 DRCTGQSADCP 65
>pdb|1Q7I|A Chain A, Structural Analysis Of Integrin Alpha Iib Beta 3-
Disintegrin With The Akgdwn Motif
Length = 68
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 15 EDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECDLPE 74
++CDC S + +PCCDA TCKL+ +QC +G CC+ CK G ICR A+ + + +
Sbjct: 2 KECDCSSPE-----NPCCDAATCKLRPGAQCGEGLCCEQCKFSRAGKICRIARGDWN-DD 55
Query: 75 WCTGTSGECP 84
CTG S +CP
Sbjct: 56 RCTGQSADCP 65
>pdb|1TEJ|A Chain A, Crystal Structure Of A Disintegrin Heterodimer At 1.9 A
Resolution
Length = 64
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 29 DPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECDLPEWCTGTSGECPADEF 88
+PCCD + CK + C GPCC+NCK G IC+ A+ + + ++CTG + +CP + +
Sbjct: 4 NPCCDPVICKPRDGEHCISGPCCNNCKFLNSGTICQRARGDGNH-DYCTGITTDCPRNRY 62
Query: 89 K 89
Sbjct: 63 N 63
>pdb|1Z1X|A Chain A, Crystal Structure Of A Novel Disintegrin From Saw-Scaled
Viper At 3.2 A Resolution
Length = 64
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 30 PCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECDLPEWCTGTSGECPADEF 88
PCCD + C+ ++ C GPCC NCK G IC+ A + L ++CTG + +CP + +
Sbjct: 5 PCCDPVKCEPREGEHCISGPCCRNCKFLNAGTICKRAMLD-GLHDYCTGVTSDCPRNRY 62
>pdb|1RMR|A Chain A, Crystal Structure Of Schistatin, A Disintegrin Homodimer
From Saw-Scaled Viper (Echis Carinatus) At 2.5 A
Resolution
Length = 64
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 30 PCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECDLPEWCTGTSGECPADEFK 89
PCCD + C+ ++ C GPCC+NC G IC+ A+ + + ++CTG + +CP + +
Sbjct: 5 PCCDPVICEPREGEHCISGPCCENCYFLNSGTICKRARGDGNQ-DYCTGITPDCPRNRYN 63
>pdb|1TEJ|B Chain B, Crystal Structure Of A Disintegrin Heterodimer At 1.9 A
Resolution
Length = 64
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 29 DPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECDLPEWCTGTSGECPADEF 88
+PCCD TCK + C GPCC+NC G IC+ A+ + + ++CTG + +CP + +
Sbjct: 4 NPCCDPQTCKPIEGKHCISGPCCENCYFLRSGTICQRARGDGNN-DYCTGITPDCPRNRY 62
Query: 89 K 89
Sbjct: 63 N 63
>pdb|2ECH|A Chain A, Echistatin-The Refined Structure Of A Disintegrin In
Solution By 1h Nmr
Length = 50
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 44 QCADGPCCDNCKLRPFGHICREAKTECDLPEWCTGTSGECPADEFK 89
+C GPCC NCK G IC+ A+ + D+ ++C G + +CP + K
Sbjct: 1 ECESGPCCRNCKFLKEGTICKRARGD-DMDDYCNGKTCDCPRNPHK 45
>pdb|1RO3|A Chain A, New Structural Insights On Short Disintegrin Echistatin
By Nmr
Length = 49
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 44 QCADGPCCDNCKLRPFGHICREAKTECDLPEWCTGTSGECPADEFK 89
+C GPCC NCK G IC+ A+ + D+ ++C G + +CP + K
Sbjct: 1 ECESGPCCRNCKFLKEGTICKRARGD-DMDDYCNGKTCDCPRNPHK 45
>pdb|2W9U|A Chain A, Solution Structure Of Jerdostatin Mutant R24k From
Trimeresurus Jerdonii
Length = 46
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 45 CADGPCCDNCKLRPFGHICREAKTECDLPEWCTGTSGECPADEFKKNG 92
C GPCC CKL+P G C + +CTG S ECP+ + NG
Sbjct: 4 CTTGPCCRQCKLKPAGTTCWKTSVS---SHYCTGRSCECPS--YPGNG 46
>pdb|2W9W|A Chain A, Solution Structure Of Jerdostatin Mutant R24k From
Trimeresurus Jerdonii With End C-Terminal Residues
N45g46 Deleted
Length = 44
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 45 CADGPCCDNCKLRPFGHICREAKTECDLPEWCTGTSGECPA 85
C GPCC CKL+P G C + +CTG S ECP+
Sbjct: 4 CTTGPCCRQCKLKPAGTTCWKTSVS---SHYCTGRSCECPS 41
>pdb|2W9O|A Chain A, Solution Structure Of Jerdostatin From Trimeresurus
Jerdonii
Length = 46
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 45 CADGPCCDNCKLRPFGHICREAKTECDLPEWCTGTSGECPADEFKKNG 92
C GPCC CKL+P G C +CTG S ECP+ + NG
Sbjct: 4 CTTGPCCRQCKLKPAGTTCWRTSVS---SHYCTGRSCECPS--YPGNG 46
>pdb|2W9V|A Chain A, Solution Structure Of Jerdostatin From Trimeresurus
Jerdonii With End C-Terminal Residues N45g46 Deleted
Length = 44
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 45 CADGPCCDNCKLRPFGHICREAKTECDLPEWCTGTSGECPA 85
C GPCC CKL+P G C +CTG S ECP+
Sbjct: 4 CTTGPCCRQCKLKPAGTTCWRTSVS---SHYCTGRSCECPS 41
>pdb|1MPZ|A Chain A, Nmr Solution Structure Of Native Viperidae Lebetina
Obtusa Protein
Length = 41
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 46 ADGPCCDNCKLRPFGHICREAKTECDLPEWCTGTSGECP 84
GPCC CKL+P G C + +CTG S +CP
Sbjct: 2 TTGPCCRQCKLKPAGTTCWKTSLT---SHYCTGKSCDCP 37
>pdb|3OWO|A Chain A, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 With And Without Nad Cofactor
pdb|3OWO|B Chain B, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 With And Without Nad Cofactor
pdb|3OWO|C Chain C, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 With And Without Nad Cofactor
pdb|3OWO|D Chain D, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 With And Without Nad Cofactor
pdb|3OX4|A Chain A, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
pdb|3OX4|B Chain B, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
pdb|3OX4|C Chain C, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
pdb|3OX4|D Chain D, Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From
Zymomonas Mobilis Zm4 Complexed With Nad Cofactor
Length = 383
Score = 29.3 bits (64), Expect = 0.52, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 33 DAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECD 71
DA+T + S A P D C L+ I + KT CD
Sbjct: 194 DALTHAFEAYSSTAATPITDACALKAASMIAKNLKTACD 232
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 86 DEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIW 118
D F +GNP N TG F+G C + + C W
Sbjct: 23 DRFS-DGNPANNPTGAAFDGTCTNLRLYCGGDW 54
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 86 DEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIW 118
D F +GNP N TG F+G C + + C W
Sbjct: 23 DRFS-DGNPANNPTGAAFDGTCTNLRLYCGGDW 54
>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135n
Length = 686
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 86 DEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIW 118
D F +GNP N TG F+G C + + C W
Sbjct: 23 DRFS-DGNPANNPTGAAFDGTCTNLRLYCGGDW 54
>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135a
Length = 686
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 86 DEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIW 118
D F +GNP N TG F+G C + + C W
Sbjct: 23 DRFS-DGNPANNPTGAAFDGTCTNLRLYCGGDW 54
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 86 DEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIW 118
D F +GNP N TG F+G C + + C W
Sbjct: 23 DRFS-DGNPANNPTGAAFDGTCTNLRLYCGGDW 54
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 86 DEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIW 118
D F +GNP N TG F+G C + + C W
Sbjct: 23 DRFS-DGNPANNPTGAAFDGTCTNLRLYCGGDW 54
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 86 DEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIW 118
D F +GNP N TG F+G C + + C W
Sbjct: 23 DRFS-DGNPANNPTGAAFDGTCTNLRLYCGGDW 54
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 86 DEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIW 118
D F +GNP N TG F+G C + + C W
Sbjct: 23 DRFS-DGNPANNPTGAAFDGTCTNLRLYCGGDW 54
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 86 DEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIW 118
D F +GNP N TG F+G C + + C W
Sbjct: 23 DRFS-DGNPANNPTGAAFDGTCTNLRLYCGGDW 54
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 86 DEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIW 118
D F +GNP N TG F+G C + + C W
Sbjct: 23 DRFS-DGNPANNPTGAAFDGTCTNLRLYCGGDW 54
>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXF|A Chain A, Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM
Bacillus Circulans Strain 251 With Maltotetraose At 120
K And Ph 9.1 Obtained After Soaking The Crystal With
Alpha- Cyclodextrin
Length = 686
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 86 DEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIW 118
D F +GNP N TG F+G C + + C W
Sbjct: 23 DRFS-DGNPANNPTGAAFDGTCTNLRLYCGGDW 54
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin
Glycosyltransferase From Bacillus Circulans Strain 251
In A Maltose-Dependent Crystal Form
pdb|1CXE|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.1 Based On Diffraction Data Of A Crystal Soaked
With Alpha-Cyclodextrin
pdb|1CXH|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.6 Based On Diffraction Data Of A Crystal Soaked
With Maltoheptaose
pdb|1CXI|A Chain A, Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120
K And Ph 7.55
pdb|2CXG|A Chain A, Cyclodextrin Glycosyltransferase Complexed To The
Inhibitor Acarbose
Length = 686
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 86 DEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIW 118
D F +GNP N TG F+G C + + C W
Sbjct: 23 DRFS-DGNPANNPTGAAFDGTCTNLRLYCGGDW 54
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 86 DEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIW 118
D F +GNP N TG F+G C + + C W
Sbjct: 23 DRFS-DGNPANNPTGAAFDGTCTNLRLYCGGDW 54
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 86 DEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIW 118
D F +GNP N TG F+G C + + C W
Sbjct: 23 DRFS-DGNPANNPTGAAFDGTCTNLRLYCGGDW 54
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 86 DEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIW 118
D F +GNP N TG F+G C + + C W
Sbjct: 23 DRFS-DGNPANNPTGAAFDGTCTNLRLYCGGDW 54
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 86 DEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIW 118
D F +GNP N TG F+G C + + C W
Sbjct: 23 DRFS-DGNPANNPTGAAFDGTCTNLRLYCGGDW 54
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 28.5 bits (62), Expect = 0.93, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 86 DEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIW 118
D F +GNP N TG F+G C + + C W
Sbjct: 23 DRFS-DGNPANNPTGAAFDGSCTNLRLYCGGDW 54
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 28.5 bits (62), Expect = 0.93, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 86 DEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIW 118
D F +GNP N TG F+G C + + C W
Sbjct: 23 DRFS-DGNPANNPTGAAFDGSCTNLRLYCGGDW 54
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 28.5 bits (62), Expect = 0.93, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 86 DEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIW 118
D F +GNP N TG F+G C + + C W
Sbjct: 23 DRFS-DGNPANNPTGAAFDGSCTNLRLYCGGDW 54
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 28.5 bits (62), Expect = 0.93, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 86 DEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIW 118
D F +GNP N TG F+G C + + C W
Sbjct: 23 DRFS-DGNPANNPTGAAFDGSCTNLRLYCGGDW 54
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 28.5 bits (62), Expect = 0.93, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 86 DEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIW 118
D F +GNP N TG F+G C + + C W
Sbjct: 23 DRFS-DGNPANNPTGAAFDGSCTNLRLYCGGDW 54
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 28.5 bits (62), Expect = 0.93, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 86 DEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIW 118
D F +GNP N TG F+G C + + C W
Sbjct: 23 DRFS-DGNPANNPTGAAFDGSCTNLRLYCGGDW 54
>pdb|2I47|A Chain A, Crystal Structure Of Catalytic Domain Of Tace With
Inhibitor
pdb|2I47|B Chain B, Crystal Structure Of Catalytic Domain Of Tace With
Inhibitor
pdb|2I47|C Chain C, Crystal Structure Of Catalytic Domain Of Tace With
Inhibitor
pdb|2I47|D Chain D, Crystal Structure Of Catalytic Domain Of Tace With
Inhibitor
pdb|3G42|A Chain A, Crystal Structure Of Tace With Tryptophan Sulfonamide
Derivative Inhibitor
pdb|3G42|B Chain B, Crystal Structure Of Tace With Tryptophan Sulfonamide
Derivative Inhibitor
pdb|3G42|C Chain C, Crystal Structure Of Tace With Tryptophan Sulfonamide
Derivative Inhibitor
pdb|3G42|D Chain D, Crystal Structure Of Tace With Tryptophan Sulfonamide
Derivative Inhibitor
Length = 288
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 3 HKLCGNGVVDEDEDCDCGS 21
+K+CGN VDE E+CD GS
Sbjct: 264 NKVCGNSRVDEGEECDPGS 282
>pdb|2FUG|4 Chain 4, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|D Chain D, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|M Chain M, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|V Chain V, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|4 Chain 4, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|D Chain D, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|4 Chain 4, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|D Chain D, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|4 Chain 4, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|D Chain D, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|M Chain M, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|V Chain V, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|4 Chain 4, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|D Chain D, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|4 Chain 4, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|4 Chain 4, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|E Chain E, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 409
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 56 LRPFGHICREAKTECDLPEWCTG 78
L PF + RE +T DL EW TG
Sbjct: 143 LTPFFYAFRERETILDLFEWVTG 165
>pdb|1XRJ|A Chain A, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
pdb|1XRJ|B Chain B, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
Length = 261
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 91 NGNPCNMRTGFCFNGFCPTVDVQCEE 116
NG P +T C NG+ P+ Q E
Sbjct: 230 NGGPSKRQTNGCLNGYTPSRKRQASE 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.142 0.524
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,279,049
Number of Sequences: 62578
Number of extensions: 177844
Number of successful extensions: 333
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 87
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)