Query psy17304
Match_columns 119
No_of_seqs 139 out of 921
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 18:33:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3607|consensus 100.0 6.8E-41 1.5E-45 294.7 7.3 116 2-119 397-512 (716)
2 smart00050 DISIN Homologues of 100.0 3.5E-30 7.6E-35 171.6 5.2 75 12-88 1-75 (75)
3 PF00200 Disintegrin: Disinteg 100.0 4.6E-30 1E-34 171.2 2.3 76 12-89 1-76 (76)
4 KOG3658|consensus 100.0 1.4E-28 3.1E-33 213.9 7.4 106 2-110 465-580 (764)
5 TIGR02232 myxo_disulf_rpt Myxo 96.9 0.0014 3E-08 38.5 3.1 38 3-45 1-38 (38)
6 PF13948 DUF4215: Domain of un 93.2 0.048 1E-06 32.9 1.3 21 3-23 18-38 (47)
7 smart00608 ACR ADAM Cysteine-R 79.2 1.3 2.9E-05 32.1 1.8 25 84-109 112-136 (137)
8 PF12115 Salp15: Salivary prot 70.7 2.8 6.1E-05 29.6 1.6 22 89-110 93-114 (118)
9 KOG3658|consensus 55.9 17 0.00037 33.5 4.0 25 88-112 630-655 (764)
10 PF07771 TSGP1: Tick salivary 55.3 5.4 0.00012 28.6 0.7 25 87-111 54-81 (120)
11 PF11703 UPF0506: UPF0506; In 36.0 28 0.00062 22.1 1.7 24 12-41 3-26 (59)
12 PF14369 zf-RING_3: zinc-finge 27.6 29 0.00062 19.5 0.6 10 4-13 25-34 (35)
13 KOG2906|consensus 22.6 38 0.00082 23.9 0.6 14 4-17 5-19 (105)
No 1
>KOG3607|consensus
Probab=100.00 E-value=6.8e-41 Score=294.67 Aligned_cols=116 Identities=54% Similarity=1.260 Sum_probs=113.5
Q ss_pred CCCcccCCceeCCCCCCCCCcCccCCCCCCCCcccCccccCCcCCCCCCCCCCcccCCCCccccCCCCCCCCCcccCCCC
Q psy17304 2 VHKLCGNGVVDEDEDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECDLPEWCTGTSG 81 (119)
Q Consensus 2 ~~~~CGNgivE~gEeCDCG~~~~C~~~d~CC~~~~C~lk~ga~Cs~g~CC~~C~~~~~g~~Cr~~~~~Cd~~e~C~G~s~ 81 (119)
+.++|||||||+|||||||++++|. ++||+++||||+++|+|+.|+||++|+|+|+|++||++.++||+||||+|+|+
T Consensus 397 ~~~~CGNg~vE~gEECDCG~~~eC~--~~cC~~~tCkL~pga~Ca~G~CC~~C~~~p~G~~CR~~~~eCDlpE~C~G~S~ 474 (716)
T KOG3607|consen 397 SGPVCGNGVVEEGEECDCGTPEECS--NLCCCASTCKLKPGAQCALGLCCKDCKFLPAGTVCRQAKNECDLPEYCNGTSS 474 (716)
T ss_pred CCCccCCcccccCCcCCCCChHHcC--ccccccccccccCCCCCCCCCchhccccccCcceecccCCccccccccCCCCC
Confidence 5689999999999999999999999 78999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhccCCccccCCcccccCCcCCChhhhhccccC
Q psy17304 82 ECPADEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIWG 119 (119)
Q Consensus 82 ~CP~~~~~~dg~~C~~~~~~C~~G~C~~~~~qC~~l~g 119 (119)
+||+|.|++||++|..++++||+|.|.++++||++|||
T Consensus 475 ~Cp~d~~~~dG~~C~~~~g~Cy~G~C~t~~~QC~~i~g 512 (716)
T KOG3607|consen 475 QCPPDLYVQDGIPCQGGQGYCYDGRCHTRDRQCQKIWG 512 (716)
T ss_pred CCCCCceeECCEecCCCcceecCCCCCCHHHHHHHHhC
Confidence 99999999999999999999999999999999999998
No 2
>smart00050 DISIN Homologues of snake disintegrins. Snake disintegrins inhibit the binding of ligands to integrin receptors. They contain a 'RGD' sequence, identical to the recognition site of many adhesion proteins. Molecules containing both disintegrin and metalloprotease domains are known as ADAMs.
Probab=99.96 E-value=3.5e-30 Score=171.56 Aligned_cols=75 Identities=61% Similarity=1.454 Sum_probs=72.0
Q ss_pred eCCCCCCCCCcCccCCCCCCCCcccCccccCCcCCCCCCCCCCcccCCCCccccCCCCCCCCCcccCCCCCCCcchh
Q psy17304 12 DEDEDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECDLPEWCTGTSGECPADEF 88 (119)
Q Consensus 12 E~gEeCDCG~~~~C~~~d~CC~~~~C~lk~ga~Cs~g~CC~~C~~~~~g~~Cr~~~~~Cd~~e~C~G~s~~CP~~~~ 88 (119)
|+|||||||+.+++. |+||++.+|+|++||+|++|+||++|+|+++|++||+++++||++|||+|+|++||+++|
T Consensus 1 E~gEeCDCG~~~~~~--d~CC~~~tC~l~~ga~Cs~G~CC~~C~~~~~g~~CR~~~~~Cd~~e~C~G~s~~CP~~~~ 75 (75)
T smart00050 1 EEGEECDCGSPKECT--NPCCDPATCKLKPGAQCASGPCCDNCKFKPAGTLCRPSVDECDLPEYCNGTSADCPPDVY 75 (75)
T ss_pred CcCcccCCCChhhcC--CCCcCCCcceecCCCeecCCCCCCcceEccCCCEecCccCCCCCccccCCCCCcCcCCCC
Confidence 789999999998876 999999999999999999999999999999999999999999999999999999999975
No 3
>PF00200 Disintegrin: Disintegrin; InterPro: IPR001762 Disintegrins are a family of small proteins from viper venoms that function as potent inhibitors of both platelet aggregation and integrin-dependent cell adhesion [, ]. Integrin receptors are involved in cell-cell and cell-extracellular matrix interactions, serving as the final common pathway leading to aggregation via formation of platelet-platelet bridges, which are essential in thrombosis and haemostasis. Disintegrins contain an RGD (Arg-Gly-Asp) or KGD (Lys-Gly-Asp) sequence motif that binds specifically to integrin IIb-IIIa receptors on the platelet surface, thereby blocking the binding of fibrinogen to the receptor-glycoprotein complex of activated platelets. Disintegrins act as receptor antagonists, inhibiting aggregation induced by ADP, thrombin, platelet-activating factor and collagen []. The role of disintegrin in preventing blood coagulation renders it of medical interest, particularly with regard to its use as an anti-coagulant []. Disintegrins from different snake species have been characterised: albolabrin, applagin, barbourin, batroxostatin, bitistatin, obtustatin [], schistatin [], echistatin [], elegantin, eristicophin, flavoridin [], halysin, kistrin, tergeminin, salmosin [] and triflavin. Disintegrin-like proteins are found in various species ranging from slime mold to humans. Some other proteins known to contain a disintegrin domain are: Some snake venom zinc metalloproteinases [] consist of an N-terminal catalytic domain fused to a disintegrin domain. Such is the case for trimerelysin I (HR1B), atrolysin-e (Ht-e) and trigramin. It has been suggested that these proteinases are able to cleave themselves from the disintegrin domains and that the latter may arise from such a post-translational processing. The beta-subunit of guinea pig sperm surface protein PH30 []. PH30 is a protein involved in sperm-egg fusion. The beta subunit contains a disintegrin at the N-terminal extremity. Mammalian epididymial apical protein 1 (EAP I) []. EAP I is associated with the sperm membrane and may play a role in sperm maturation. Structurally, EAP I consists of an N-terminal domain, followed by a zinc metalloproteinase domain, a disintegrin domain, and a large C-terminal domain that contains a transmembrane region. ; PDB: 1L3X_A 3C05_D 3K7N_A 3K7L_A 2ECH_A 1RO3_A 2PJF_A 2PJG_A 1Q7J_A 1Q7I_A ....
Probab=99.96 E-value=4.6e-30 Score=171.16 Aligned_cols=76 Identities=62% Similarity=1.483 Sum_probs=70.3
Q ss_pred eCCCCCCCCCcCccCCCCCCCCcccCccccCCcCCCCCCCCCCcccCCCCccccCCCCCCCCCcccCCCCCCCcchhc
Q psy17304 12 DEDEDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECDLPEWCTGTSGECPADEFK 89 (119)
Q Consensus 12 E~gEeCDCG~~~~C~~~d~CC~~~~C~lk~ga~Cs~g~CC~~C~~~~~g~~Cr~~~~~Cd~~e~C~G~s~~CP~~~~~ 89 (119)
|+|||||||++.+|. ++||++.+|+|+++|+|++|+||.+|+|+++|++||+++++||++|||+|+|++||+|+||
T Consensus 1 E~gEeCDCG~~~~C~--~~CC~~~~C~l~~ga~C~~g~CC~~C~~~~~g~~Cr~~~~~Cd~~e~C~G~s~~CP~d~~k 76 (76)
T PF00200_consen 1 EEGEECDCGSPEECN--DPCCDATTCKLKPGAQCSNGPCCNNCQFKPSGTVCRPATNECDLPEYCNGSSAECPPDVYK 76 (76)
T ss_dssp -TTTS-STSSTTTHT--CTTEETTTTEESTTSSTSSSTTEETTEESSTTEEEEECSSTTSEEEEECSSSSSS-SSTT-
T ss_pred CcCccCCCCChhhcc--CCCcCccccccccccccccCcccCcccccccccccCcccCcCCCCCcCCCcCCcCcCCCCC
Confidence 789999999999995 9999999999999999999999999999999999999999999999999999999999986
No 4
>KOG3658|consensus
Probab=99.95 E-value=1.4e-28 Score=213.87 Aligned_cols=106 Identities=45% Similarity=1.066 Sum_probs=98.7
Q ss_pred CCCcccCCceeCCCCCCCCCcCccCCCCCCCCc------ccCccccCCcCC--CCCCCC-CCcccCCCCccccCC-CCCC
Q psy17304 2 VHKLCGNGVVDEDEDCDCGSIDECHEKDPCCDA------ITCKLKKESQCA--DGPCCD-NCKLRPFGHICREAK-TECD 71 (119)
Q Consensus 2 ~~~~CGNgivE~gEeCDCG~~~~C~~~d~CC~~------~~C~lk~ga~Cs--~g~CC~-~C~~~~~g~~Cr~~~-~~Cd 71 (119)
+.+||||+|||+|||||||..++|. |.||+| ..||||+||+|| +||||. +|||++++..||.+. .+|.
T Consensus 465 ~~sfCGN~iVE~GEECDcG~~~~~~--D~CC~p~~~~~~k~C~lk~gaqCSpsqgpCC~~~Cqf~~~~~kc~~~d~~~C~ 542 (764)
T KOG3658|consen 465 ESSFCGNGIVEPGEECDCGFSTDCK--DSCCDPQPNLDEKPCTLKPGAQCSPSQGPCCTPNCQFHTSGEKCREADEATCK 542 (764)
T ss_pred cccccCCccccCCcccCcccccccC--CcccCCCCCCCCCCceeCCCCccCCCCCCccCCcceeecccCeeeccccccCc
Confidence 4689999999999999999999998 999993 599999999999 599996 999999999999765 4899
Q ss_pred CCCcccCCCCCCCcchhccCCccccCCcccccCCcCCCh
Q psy17304 72 LPEWCTGTSGECPADEFKKNGNPCNMRTGFCFNGFCPTV 110 (119)
Q Consensus 72 ~~e~C~G~s~~CP~~~~~~dg~~C~~~~~~C~~G~C~~~ 110 (119)
.+++|||.+++||+..+++|||.|+ .+++|++|+|...
T Consensus 543 ~~s~CnG~~aeCP~s~~~~d~t~C~-~~~~C~~G~C~gs 580 (764)
T KOG3658|consen 543 GESTCNGFSAECPPSPPKPDGTVCN-ETGVCINGKCIGS 580 (764)
T ss_pred CcccccCCccCCcCCCCCCCCCccc-ccceEeCCcCccH
Confidence 9999999999999999999999999 6899999999874
No 5
>TIGR02232 myxo_disulf_rpt Myxococcus cysteine-rich repeat. This model represents a sequence region shared between several proteins of Myxococcus xanthus DK 1622 and some eukaryotic proteins that include human pappalysin-1. The region of about 40 amino acids contains several conserved Cys residues presumed to form disulfide bonds. The region appears in up to 13 repeats in Myxococcus.
Probab=96.85 E-value=0.0014 Score=38.46 Aligned_cols=38 Identities=37% Similarity=0.924 Sum_probs=28.3
Q ss_pred CCcccCCceeCCCCCCCCCcCccCCCCCCCCcccCccccCCcC
Q psy17304 3 HKLCGNGVVDEDEDCDCGSIDECHEKDPCCDAITCKLKKESQC 45 (119)
Q Consensus 3 ~~~CGNgivE~gEeCDCG~~~~C~~~d~CC~~~~C~lk~ga~C 45 (119)
+++|||++|..+||||=|-...= |-| +. .|++.++..|
T Consensus 1 ~~~CGdG~~~~~EeCDDGN~~~~---DGC-s~-~C~iE~~~~C 38 (38)
T TIGR02232 1 APTCGDGIIEPGEECDDGNTTSG---DGC-SA-TCRLEEGFAC 38 (38)
T ss_pred CCcCCCCcCcCCccccCCCCcCC---CCc-Cc-ccccCCCCCC
Confidence 47899999999999999966421 343 33 7888877665
No 6
>PF13948 DUF4215: Domain of unknown function (DUF4215)
Probab=93.22 E-value=0.048 Score=32.91 Aligned_cols=21 Identities=38% Similarity=0.890 Sum_probs=18.3
Q ss_pred CCcccCCceeCCCCCCCCCcC
Q psy17304 3 HKLCGNGVVDEDEDCDCGSID 23 (119)
Q Consensus 3 ~~~CGNgivE~gEeCDCG~~~ 23 (119)
.++||++||...||||=|...
T Consensus 18 ~~~CGDgii~~~E~CDD~N~~ 38 (47)
T PF13948_consen 18 EPICGDGIIVGDEQCDDGNSI 38 (47)
T ss_pred ccccCCCeEECCcccCCCCcc
Confidence 378999999999999999553
No 7
>smart00608 ACR ADAM Cysteine-Rich Domain.
Probab=79.24 E-value=1.3 Score=32.10 Aligned_cols=25 Identities=28% Similarity=0.591 Sum_probs=21.3
Q ss_pred CcchhccCCccccCCcccccCCcCCC
Q psy17304 84 PADEFKKNGNPCNMRTGFCFNGFCPT 109 (119)
Q Consensus 84 P~~~~~~dg~~C~~~~~~C~~G~C~~ 109 (119)
|....++|||.|..+ .+|++++|++
T Consensus 112 ~d~g~V~dGT~CG~~-kvC~n~~Cv~ 136 (137)
T smart00608 112 TDLGMVKDGTKCGPG-KVCINGQCVD 136 (137)
T ss_pred CCccccCCCCCcCCC-CccCCCCccc
Confidence 466789999999986 6999999976
No 8
>PF12115 Salp15: Salivary protein of 15kDa inhibits CD4+ T cell activation; InterPro: IPR021971 This is a family of 15kDa salivary proteins from Acari Arachnids that is induced on feeding and assists the parasite to remain attached to its arthropod host. By repressing calcium fluxes triggered by TCR engagement, Salp15 inhibits CD4+ T cell activation. Salp15 shows weak similarity to Inhibin A, a member of the TGF-beta superfamily that inhibits the production of cytokines and the proliferation of T cells.
Probab=70.69 E-value=2.8 Score=29.55 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=19.4
Q ss_pred ccCCccccCCcccccCCcCCCh
Q psy17304 89 KKNGNPCNMRTGFCFNGFCPTV 110 (119)
Q Consensus 89 ~~dg~~C~~~~~~C~~G~C~~~ 110 (119)
++||+||+.....|.+|.|+..
T Consensus 93 LpdgtPCg~~~~~C~~G~Cv~~ 114 (118)
T PF12115_consen 93 LPDGTPCGPNGQTCKNGKCVGH 114 (118)
T ss_pred CCCCCccCCCcCEECCCccCCC
Confidence 8999999966789999999875
No 9
>KOG3658|consensus
Probab=55.87 E-value=17 Score=33.45 Aligned_cols=25 Identities=40% Similarity=0.933 Sum_probs=21.9
Q ss_pred hccCCccccCCcccccC-CcCCChhh
Q psy17304 88 FKKNGNPCNMRTGFCFN-GFCPTVDV 112 (119)
Q Consensus 88 ~~~dg~~C~~~~~~C~~-G~C~~~~~ 112 (119)
+.++|+||++.+|||-. +.|...+.
T Consensus 630 ~L~pGsPC~~~~GyCdvf~KCr~vd~ 655 (764)
T KOG3658|consen 630 YLRPGSPCNNYKGYCDVFGKCRKVDA 655 (764)
T ss_pred ecCCCCcCcCCcceeccccceeeecC
Confidence 78999999999999988 99987653
No 10
>PF07771 TSGP1: Tick salivary peptide group 1; InterPro: IPR011694 This entry contains a group of peptides derived from a salivary gland cDNA library of the tick Ixodes scapularis (Black-legged tick) []. Also present are peptides from a related tick species, Ixodes ricinus (Sheep tick). They are characterised by a putative signal peptide, indicative of secretion, and conserved cysteine residues.
Probab=55.31 E-value=5.4 Score=28.65 Aligned_cols=25 Identities=32% Similarity=0.833 Sum_probs=19.2
Q ss_pred hhccCCcccc---CCcccccCCcCCChh
Q psy17304 87 EFKKNGNPCN---MRTGFCFNGFCPTVD 111 (119)
Q Consensus 87 ~~~~dg~~C~---~~~~~C~~G~C~~~~ 111 (119)
.|..||++|. +..|+|++|.|....
T Consensus 54 g~~~dGt~C~y~~g~~G~C~~G~C~~~~ 81 (120)
T PF07771_consen 54 GFYGDGTPCFYNTGQDGVCQDGLCYLTE 81 (120)
T ss_pred EEecCCCccccCCCCceEecCCEEECCC
Confidence 3567999995 346999999997654
No 11
>PF11703 UPF0506: UPF0506; InterPro: IPR021712 This uncharacterised family is found in Schistosoma genomes. Although uncharacterised it appears to belong to the knottin fold. The sequence is composed of two repeats of a 6 cysteine motif.
Probab=35.98 E-value=28 Score=22.14 Aligned_cols=24 Identities=29% Similarity=0.816 Sum_probs=16.7
Q ss_pred eCCCCCCCCCcCccCCCCCCCCcccCcccc
Q psy17304 12 DEDEDCDCGSIDECHEKDPCCDAITCKLKK 41 (119)
Q Consensus 12 E~gEeCDCG~~~~C~~~d~CC~~~~C~lk~ 41 (119)
+.||+|+--.. ++||.+..|.|+.
T Consensus 3 ~lge~C~kt~f------~~CCg~~vC~L~~ 26 (59)
T PF11703_consen 3 ELGEECSKTVF------DRCCGDLVCQLIS 26 (59)
T ss_pred CCCCEecCCcC------CcCCCcceecccC
Confidence 56777765433 7888887777765
No 12
>PF14369 zf-RING_3: zinc-finger
Probab=27.63 E-value=29 Score=19.52 Aligned_cols=10 Identities=40% Similarity=0.803 Sum_probs=8.7
Q ss_pred CcccCCceeC
Q psy17304 4 KLCGNGVVDE 13 (119)
Q Consensus 4 ~~CGNgivE~ 13 (119)
|.|++|+||+
T Consensus 25 P~C~~gFvEe 34 (35)
T PF14369_consen 25 PRCHGGFVEE 34 (35)
T ss_pred cCCCCcEeEe
Confidence 6799999986
No 13
>KOG2906|consensus
Probab=22.64 E-value=38 Score=23.94 Aligned_cols=14 Identities=43% Similarity=0.959 Sum_probs=11.4
Q ss_pred CcccCCc-eeCCCCC
Q psy17304 4 KLCGNGV-VDEDEDC 17 (119)
Q Consensus 4 ~~CGNgi-vE~gEeC 17 (119)
|.|||.+ ||.|++|
T Consensus 5 P~Cgn~Live~g~~~ 19 (105)
T KOG2906|consen 5 PTCGNMLIVESGESC 19 (105)
T ss_pred CCCCCEEEEecCCeE
Confidence 6799987 7888885
Done!