RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17304
         (119 letters)



>gnl|CDD|215784 pfam00200, Disintegrin, Disintegrin. 
          Length = 76

 Score = 94.6 bits (236), Expect = 5e-27
 Identities = 49/78 (62%), Positives = 58/78 (74%), Gaps = 2/78 (2%)

Query: 12 DEDEDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECD 71
          +E E+CDCGS +EC   +PCCDA TCKLK  +QCA GPCCD CK +P G +CR A  ECD
Sbjct: 1  EEGEECDCGSPEECQ--NPCCDATTCKLKPGAQCATGPCCDQCKFKPAGTVCRPASGECD 58

Query: 72 LPEWCTGTSGECPADEFK 89
          LPE+CTG S ECP D +K
Sbjct: 59 LPEYCTGQSAECPPDVYK 76


>gnl|CDD|214490 smart00050, DISIN, Homologues of snake disintegrins.  Snake
          disintegrins inhibit the binding of ligands to integrin
          receptors. They contain a 'RGD' sequence, identical to
          the recognition site of many adhesion proteins.
          Molecules containing both disintegrin and
          metalloprotease domains are known as ADAMs.
          Length = 75

 Score = 83.9 bits (208), Expect = 8e-23
 Identities = 47/77 (61%), Positives = 56/77 (72%), Gaps = 2/77 (2%)

Query: 12 DEDEDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECD 71
          +E E+CDCGS  EC   DPCCD  TCKLK  +QCA GPCCDNCK +P G +CR +  ECD
Sbjct: 1  EEGEECDCGSPKECT--DPCCDPATCKLKPGAQCASGPCCDNCKFKPAGTLCRPSVDECD 58

Query: 72 LPEWCTGTSGECPADEF 88
          LPE+C GTS +CP D +
Sbjct: 59 LPEYCNGTSADCPPDPY 75


>gnl|CDD|219879 pfam08516, ADAM_CR, ADAM cysteine-rich.  ADAMs are
           membrane-anchored proteases that proteolytically modify
           cell surface and extracellular matrix (ECM) in order to
           alter cell behaviour. It has been shown that the
           cysteine-rich domain of ADAM13 regulates the protein's
           metalloprotease activity.
          Length = 117

 Score = 39.2 bits (92), Expect = 5e-05
 Identities = 14/29 (48%), Positives = 22/29 (75%)

Query: 91  NGNPCNMRTGFCFNGFCPTVDVQCEEIWG 119
           +G+PC    G+C+NG CPT D QC++++G
Sbjct: 1   DGHPCQNNQGYCYNGRCPTRDNQCQDLFG 29


>gnl|CDD|214743 smart00608, ACR, ADAM Cysteine-Rich Domain. 
          Length = 137

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 91  NGNPCNMRTGFCFNGFCPTVDVQCEEIWG 119
           +G PC+   G+C+NG CPT D QC+ ++G
Sbjct: 2   DGTPCDNGQGYCYNGRCPTRDNQCQALFG 30


>gnl|CDD|236584 PRK09602, PRK09602, translation-associated GTPase; Reviewed.
          Length = 396

 Score = 30.9 bits (71), Expect = 0.13
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 7/35 (20%)

Query: 82  ECPADEFKKNGNPCNMRTGFCFNG--FCPT--VDV 112
           ECP  E    G  CN R G C +G  F P   +DV
Sbjct: 48  ECPCKEL---GVKCNPRNGKCIDGTRFIPVELIDV 79


>gnl|CDD|206686 cd01899, Ygr210, Ygr210 GTPase.  Ygr210 is a member of Obg-like
           family and present in archaea and fungi. They are
           characterized by a distinct glycine-rich motif
           immediately following the Walker B motif. The Ygr210 and
           YyaF/YchF subfamilies appear to form one major branch of
           the Obg-like family. Among eukaryotes, the Ygr210
           subfamily is represented only in fungi. These fungal
           proteins form a tight cluster with their archaeal
           orthologs, which suggests the possibility of horizontal
           transfer from archaea to fungi.
          Length = 318

 Score = 28.3 bits (64), Expect = 0.84
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 7/35 (20%)

Query: 82  ECPADEFKKNGNPCNMRTGFCFNGFC--PT--VDV 112
           ECP  E   +   CN R G C +G    P   +DV
Sbjct: 45  ECPCKELGVS---CNPRYGKCIDGKRYVPVELIDV 76


>gnl|CDD|151789 pfam11348, DUF3150, Protein of unknown function (DUF3150).  This
          bacterial family of proteins with unknown function
          appears to be restricted to Proteobacteria.
          Length = 257

 Score = 26.9 bits (60), Expect = 2.3
 Identities = 6/21 (28%), Positives = 9/21 (42%)

Query: 51 CDNCKLRPFGHICREAKTECD 71
           D   L+PF  +   A+  C 
Sbjct: 46 IDPEALKPFSKLKSRAERLCL 66


>gnl|CDD|225855 COG3318, COG3318, Predicted metal-binding protein related to the
          C-terminal domain of SecA [General function prediction
          only].
          Length = 216

 Score = 26.7 bits (59), Expect = 2.6
 Identities = 9/37 (24%), Positives = 17/37 (45%)

Query: 9  GVVDEDEDCDCGSIDECHEKDPCCDAITCKLKKESQC 45
          G ++E++ C C S  + +++D  C      L     C
Sbjct: 2  GKLNENDLCPCLSALKKYKQDGDCAKTEGFLTALLSC 38


>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits
           [Intracellular trafficking and secretion].
          Length = 757

 Score = 26.6 bits (59), Expect = 3.8
 Identities = 7/33 (21%), Positives = 9/33 (27%), Gaps = 4/33 (12%)

Query: 21  SIDECHEKDPCCDAITCKLKKESQCADGPCCDN 53
            +      D     I  KL+K  Q        N
Sbjct: 324 KLFLIEYNDD----IYIKLEKLDQLTRLADDQN 352


>gnl|CDD|221770 pfam12785, VESA1_N, Variant erythrocyte surface antigen-1.  This
           family represents the N-terminal of the variant
           erythrocyte surface antigen 1, versions a and b, of
           Babesia. Babesia bovis is a tick-borne,
           intra-erythrocytic, protozoal parasite of cattle that
           shares many lifestyle parallels with the most virulent
           of the human malarial parasites, Plasmodium falciparum.
           Babesia uses antigenic variation to establish consistent
           infections of long duration. The two variants of VESA1,
           a and b, are expressed from different but closely
           related genes, and variation is achieved through the
           involvement of a segmental gene conversion mechanism and
           low-frequency epigenetic in situ switching of
           transcriptional activity from the VESA1 gene-pair to a
           possible other gene pair.
          Length = 428

 Score = 26.1 bits (58), Expect = 4.7
 Identities = 9/44 (20%), Positives = 11/44 (25%), Gaps = 5/44 (11%)

Query: 12  DEDEDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCK 55
             D  C C +         C     CK     +C    C   C 
Sbjct: 147 GSDHGCKCSTGGGS-----CSAGKECKCALAGKCCKCCCKGKCG 185


>gnl|CDD|200363 TIGR04112, seleno_YedE, putative selenium metabolism protein, YedE
           family.  For 79 of the first 80 reference genomes in
           which a member of this protein family, YedE, is found, a
           selenium utilization system is found, spread over a
           broad taxonomic range (Firmicutes, spirochetes,
           delta-proteobacteria, Fusobacteria, Bacteriodes, etc.
           This family is less widespread than YedF, also involved
           in selenium metabolism.
          Length = 337

 Score = 26.0 bits (58), Expect = 5.8
 Identities = 10/17 (58%), Positives = 10/17 (58%), Gaps = 2/17 (11%)

Query: 90  KNGNPCNMRTGFCFNGF 106
           K GNP NM  GFC   F
Sbjct: 18  KLGNPGNM--GFCIACF 32


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.142    0.524 

Gapped
Lambda     K      H
   0.267   0.0705    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,575,882
Number of extensions: 425964
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 35
Length of query: 119
Length of database: 10,937,602
Length adjustment: 82
Effective length of query: 37
Effective length of database: 7,300,574
Effective search space: 270121238
Effective search space used: 270121238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)