RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17304
(119 letters)
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja
atra}
Length = 422
Score = 135 bits (340), Expect = 2e-39
Identities = 56/119 (47%), Positives = 73/119 (61%), Gaps = 2/119 (1%)
Query: 1 IVHKLCGNGVVDEDEDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFG 60
+ +CGN V+ E+CDCGS +C CC+A TCKL+ E+QC CC+ CK +
Sbjct: 215 VSPPICGNYFVEVGEECDCGSPADCQ--SACCNATTCKLQHEAQCDSEECCEKCKFKGAR 272
Query: 61 HICREAKTECDLPEWCTGTSGECPADEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIWG 119
CR AK +CDLPE CTG S ECP D F++NG PC G+C+NG CP + QC + G
Sbjct: 273 AECRAAKDDCDLPELCTGQSAECPTDVFQRNGLPCQNNQGYCYNGKCPIMTNQCIALRG 331
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 427
Score = 130 bits (327), Expect = 2e-37
Identities = 57/119 (47%), Positives = 79/119 (66%), Gaps = 2/119 (1%)
Query: 1 IVHKLCGNGVVDEDEDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFG 60
+ +CGN + +E E+CDCGS C +PCCDA TCKLK ++C +G CC CK++ G
Sbjct: 211 VSPPVCGNEIWEEGEECDCGSPANCQ--NPCCDAATCKLKPGAECGNGLCCYQCKIKTAG 268
Query: 61 HICREAKTECDLPEWCTGTSGECPADEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIWG 119
+CR A+ ECD+PE CTG S ECP D+ ++NG PC G+C+NG CP + QC ++G
Sbjct: 269 TVCRRARDECDVPEHCTGQSAECPRDQLQQNGKPCQNNRGYCYNGDCPIMRNQCISLFG 327
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease,
disintegrin, calcium-binding, ADAM, SVMP, M protein,
toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A*
2erq_A*
Length = 427
Score = 127 bits (319), Expect = 3e-36
Identities = 57/119 (47%), Positives = 76/119 (63%), Gaps = 3/119 (2%)
Query: 1 IVHKLCGNGVVDEDEDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFG 60
+ +CGN V+ E+CDCGS C DPCCDA TCKL++ +QCA+G CCD C+ + G
Sbjct: 218 VSPAVCGNYFVEVGEECDCGSPRTCR--DPCCDATTCKLRQGAQCAEGLCCDQCRFKGAG 275
Query: 61 HICREAKTECDLPEWCTGTSGECPADEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIWG 119
CR AK ECD+ + CTG S EC F++NG PC G+C+NG CP + QC ++G
Sbjct: 276 TECRAAKDECDMADVCTGRSAECTDR-FQRNGQPCKNNNGYCYNGKCPIMADQCIALFG 333
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase,
apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus
atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Length = 419
Score = 125 bits (314), Expect = 1e-35
Identities = 58/119 (48%), Positives = 76/119 (63%), Gaps = 2/119 (1%)
Query: 1 IVHKLCGNGVVDEDEDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFG 60
I +CGN +++ E+CDCG+ + C ++ CCDA TCKLK SQC G CC+ CK G
Sbjct: 209 ISPPVCGNELLEVGEECDCGTPENC--QNECCDAATCKLKSGSQCGHGDCCEQCKFSKSG 266
Query: 61 HICREAKTECDLPEWCTGTSGECPADEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIWG 119
CR + +ECD E CTG S ECPAD F KNG PC G+C+NG CP + QC +++G
Sbjct: 267 TECRASMSECDPAEHCTGQSSECPADVFHKNGQPCLDNYGYCYNGNCPIMYHQCYDLFG 325
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 117 bits (295), Expect = 2e-32
Identities = 50/119 (42%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
Query: 1 IVHKLCGNGVVDEDEDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFG 60
+ CGNG ++ E+CDCG+ EC + C L ++SQC+DG CC CK +P G
Sbjct: 210 LDPPECGNGFIETGEECDCGTPAEC-VLEGAECCKKCTLTQDSQCSDGLCCKKCKFQPMG 268
Query: 61 HICREAKTECDLPEWCTGTSGECPADEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIWG 119
+CREA +CD+ E C+G S +C + K +G C+ G CF G C T D QC+ IWG
Sbjct: 269 TVCREAVNDCDIRETCSGNSSQCAPNIHKMDGYSCDGVQGICFGGRCKTRDRQCKYIWG 327
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Length = 397
Score = 92.8 bits (230), Expect = 8e-24
Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 19/117 (16%)
Query: 3 HKLCGNGVVDEDEDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHI 62
+CGN V+ E+CDCGS C + CC C+ +
Sbjct: 212 PPICGNYFVEVGEECDCGSPQAC--QSACC-----------------NAATCQFKGAETE 252
Query: 63 CREAKTECDLPEWCTGTSGECPADEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIWG 119
CR AK +CDLPE CTG S ECP D ++NG+PC +C+NG CPT+ QC + G
Sbjct: 253 CRVAKDDCDLPELCTGQSAECPTDSLQRNGHPCQNNQSYCYNGTCPTLTNQCITLLG 309
>2ao7_A ADAM 10; extracellular, protease, disintegrin, hydrolase; 2.90A
{Bos taurus}
Length = 192
Score = 82.4 bits (203), Expect = 5e-21
Identities = 44/118 (37%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 6 CGNGVVDEDEDCDCGSIDECHEKDPCC------DAITCKLKKESQC--ADGPCCD-NCKL 56
CGNG+V++ E+CDCG D+C KD CC + CKLK QC + GPCC +C
Sbjct: 6 CGNGMVEQGEECDCGYSDQC--KDECCYDANQPEGKKCKLKPGKQCSPSQGPCCTAHCAF 63
Query: 57 RPFGHICREAKTECDLPEWCTGTSGECPADEFKKNGNPCNMRTGFCFNGFCPTVDVQC 114
+ CR+ ++C C G + CPA + K N CN T C NG C +
Sbjct: 64 KSKTEKCRDD-SDCAKEGICNGITALCPASDPKPNFTDCNRHTQVCINGQCAGSICEK 120
>1j2l_A Disintegrin triflavin; RGD motif, trimestatin, snake venom,
toxin; 1.70A {Trimeresurus flavoviridis} SCOP: g.20.1.1
PDB: 1fvl_A 2pji_A 1n4y_A 2pjf_A 2pjg_A 1q7i_A 1q7j_A
1l3x_A 3c05_A 3c05_B
Length = 70
Score = 67.0 bits (164), Expect = 2e-16
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 15 EDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECDLPE 74
E+CDCGS +PCCDA TCKL+ +QCADG CCD C+ + ICR A+ + +
Sbjct: 2 EECDCGS-----PSNPCCDAATCKLRPGAQCADGLCCDQCRFKKKRTICRIARGDFP-DD 55
Query: 75 WCTGTSGECPAD 86
CTG S +CP
Sbjct: 56 RCTGQSADCPRW 67
>1tej_A Disintegrin chain A; cryatal structure, heterodimer, protein
binding; 1.90A {Echis carinatus} SCOP: g.20.1.1 PDB:
1rmr_A 1tej_B 1z1x_A
Length = 64
Score = 66.3 bits (162), Expect = 3e-16
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 28 KDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECDLPEWCTGTSGECPADE 87
+PCCD + CK + C GPCC+NCK G IC+ A+ + + ++CTG + +CP +
Sbjct: 3 VNPCCDPVICKPRDGEHCISGPCCNNCKFLNSGTICQRARGDGN-HDYCTGITTDCPRNR 61
Query: 88 FK 89
+
Sbjct: 62 YN 63
>1ro3_A Disintegrin echistatin; no regular secondary structure, cell
adhesion; NMR {Echis carinatus} SCOP: g.20.1.1 PDB:
2ech_A
Length = 49
Score = 60.7 bits (148), Expect = 3e-14
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 44 QCADGPCCDNCKLRPFGHICREAKTECDLPEWCTGTSGECPADEFKKNG 92
+C GPCC NCK G IC+ A+ D+ ++C G + +CP + K
Sbjct: 1 ECESGPCCRNCKFLKEGTICKRARG-DDMDDYCNGKTCDCPRNPHKGPA 48
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease,
heparin-binding, metalloproteinase, metzincin,
glycoprotein metal-binding; 2.00A {Homo sapiens} PDB:
2jih_A 3q2g_A* 3q2h_A*
Length = 300
Score = 52.9 bits (127), Expect = 1e-09
Identities = 16/80 (20%), Positives = 20/80 (25%), Gaps = 13/80 (16%)
Query: 6 CGNGVVDEDEDCDCGSIDECHEKDPCCDAITCK-LKKESQCADGPCCDNCKLRPF-GHIC 63
D + C ++ K A TC L C G C
Sbjct: 225 LPGTSYDANRQCQFTFGEDS--KHCPDAASTCSTLWCTGTSGGVLVCQTKHFPWADGTSC 282
Query: 64 REAKTECDLPEWCTGTSGEC 83
E K WC G+C
Sbjct: 283 GEGK-------WCIN--GKC 293
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of
basic residues, extracellular matrix, glycoprotein,
hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens}
PDB: 3b2z_A
Length = 316
Score = 49.2 bits (117), Expect = 3e-08
Identities = 17/120 (14%), Positives = 23/120 (19%), Gaps = 41/120 (34%)
Query: 3 HKLCGNGVVDEDEDCDCGSIDECHE---KDPCCDAITCKLKKESQCADGPCCDNCKLRPF 59
G D D C + P C A+ C C
Sbjct: 224 VTFPGK-DYDADRQCQLTFGPDSRHCPQLPPPCAALWCSG---HLNGHAMCQTKHSPWAD 279
Query: 60 GHICREAKTECDLPEWCTGTSGECPADEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIWG 119
G C A+ C G C +D Q ++
Sbjct: 280 GTPCGPAQ---------------------------------ACMGGRCLHMD-QLQDFNI 305
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of
BAS residues, extracellular matrix, glycoprotein,
hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo
sapiens}
Length = 378
Score = 47.8 bits (113), Expect = 1e-07
Identities = 16/114 (14%), Positives = 21/114 (18%), Gaps = 15/114 (13%)
Query: 6 CGNGVVDEDEDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICRE 65
D + C+ E C C + G K P
Sbjct: 225 LPGQTYDATQQCNLTFGPEYS---VCPGMDVCARLWCAVVRQGQMVCLTKKLPAV----- 276
Query: 66 AKTECDLPEWCTGTSGECPADEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIWG 119
T C C + K + G QC G
Sbjct: 277 EGTPCGKGRIC-LQGKCVDKTKKKYYSTSSHGNWGSW------GSWGQCSRSCG 323
>2w9o_A Jerdostatin, short disintegrin jerdostatin; venom, toxin, cell
adhesion, blood coagulation; NMR {Trimeresurus
jerdonii} PDB: 2w9u_A
Length = 46
Score = 42.5 bits (100), Expect = 5e-07
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 44 QCADGPCCDNCKLRPFGHICREAKTECDLPEWCTGTSGECPADEFK 89
C GPCC CKL+P G C +CTG S ECP+
Sbjct: 3 DCTTGPCCRQCKLKPAGTTCWRTSVSSH---YCTGRSCECPSYPGN 45
>2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A
{Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A*
Length = 288
Score = 43.9 bits (103), Expect = 2e-06
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 4 KLCGNGVVDEDEDCDCGSIDECH 26
K+CGN VDE E+CD GS H
Sbjct: 265 KVCGNSRVDEGEECDPGSHHHHH 287
>1mpz_A Obtustatin; disintegrin, hydrolase; NMR {Macrovipera lebetina
obtusa} SCOP: g.20.1.1 PDB: 2w9w_A 2w9v_A
Length = 41
Score = 34.9 bits (80), Expect = 3e-04
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 45 CADGPCCDNCKLRPFGHICREAKTECDLPEWCTGTSGECP 84
C GPCC CKL+P G C + +CTG S +CP
Sbjct: 1 CTTGPCCRQCKLKPAGTTCWKTSLTSH---YCTGKSCDCP 37
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 30.2 bits (68), Expect = 0.11
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 22 IDECHEKDPCCDAITCKLKKESQCAD 47
+DE H DP A ++ D
Sbjct: 99 MDEAHFLDPASVAARGYIETRVSMGD 124
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 28.7 bits (64), Expect = 0.42
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 22 IDECHEKDPCCDAITCKLKKESQCAD 47
+DE H DPC A + + +
Sbjct: 116 MDEAHFTDPCSVAARGYISTRVEMGE 141
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 28.7 bits (64), Expect = 0.49
Identities = 13/87 (14%), Positives = 21/87 (24%), Gaps = 1/87 (1%)
Query: 19 CGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECDLPEWCTG 78
D E+ A + C + C P C E K +C L G
Sbjct: 296 YHDTDFLGEEL-DIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNG 354
Query: 79 TSGECPADEFKKNGNPCNMRTGFCFNG 105
+ + +G +
Sbjct: 355 SPTKILHGRGGISGYTLRLCKMDNECT 381
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase,
ATP-binding, reticulum, nucleotidyltransferase,
multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4}
PDB: 2vbc_A 2wzq_A
Length = 618
Score = 27.2 bits (60), Expect = 1.6
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 22 IDECHEKDPCCDAITCKLKKESQCAD 47
+DE H DPC A + + +
Sbjct: 283 MDEAHFTDPCSVAARGYISTRVEMGE 308
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 26.9 bits (59), Expect = 2.1
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 22 IDECHEKDPCCDAITCKLKKESQC 45
DECH D + +++
Sbjct: 324 CDECHSTDSTTILGIGTVLDQAET 347
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 26.7 bits (59), Expect = 2.3
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 15 EDCDCGSIDECHEKDPCCDAITCKLK 40
+ + +DE H DP A +
Sbjct: 111 PNYNLFVMDEAHFTDPASIAARGYIA 136
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3
catalytic subunit; nucleotide-binding, capsid protein;
2.75A {Murray valley encephalitis virus}
Length = 673
Score = 26.4 bits (58), Expect = 3.0
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 22 IDECHEKDPCCDAITCKLKKESQCAD 47
+DE H DP A + + +
Sbjct: 338 MDEAHFTDPASIAARGYIATRVEAGE 363
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 26.0 bits (57), Expect = 3.3
Identities = 9/48 (18%), Positives = 12/48 (25%), Gaps = 1/48 (2%)
Query: 68 TECDLPEWCTGTSGECPADEFKKNGNPCNMRTGF-CFNGFCPTVDVQC 114
EC + T + M F C NG + C
Sbjct: 176 AECTFTKRRTMGYQDFADVVCYTQKADSPMDDFFQCVNGKYISQMKAC 223
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 25.6 bits (55), Expect = 5.9
Identities = 11/111 (9%), Positives = 24/111 (21%), Gaps = 4/111 (3%)
Query: 13 EDEDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNC----KLRPFGHICREAKT 68
+D C + C + C + + + C C + +C
Sbjct: 247 HFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLG 306
Query: 69 ECDLPEWCTGTSGECPADEFKKNGNPCNMRTGFCFNGFCPTVDVQCEEIWG 119
C + + C + G ++ E
Sbjct: 307 PCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEAN 357
>3hi7_A Amiloride-sensitive amine oxidase; oxidoreductase, copper amine
oxidase, topaquinone, TPQ, DIAM oxidase, DAO, human,
glycoprotein, heparin-binding; HET: TPQ NAG BMA; 1.80A
{Homo sapiens} PDB: 3hig_A* 3hii_A* 3k5t_A* 3mph_A*
Length = 731
Score = 25.7 bits (55), Expect = 6.0
Identities = 7/43 (16%), Positives = 11/43 (25%), Gaps = 3/43 (6%)
Query: 71 DLPEWCTGTS---GECPADEFKKNGNPCNMRTGFCFNGFCPTV 110
+ G + C+M F +NG V
Sbjct: 689 ASRDTVIVWPRDNGPNYVQRWIPEDRDCSMPPPFSYNGTYRPV 731
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.142 0.524
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,952,661
Number of extensions: 111542
Number of successful extensions: 741
Number of sequences better than 10.0: 1
Number of HSP's gapped: 540
Number of HSP's successfully gapped: 250
Length of query: 119
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,440,192
Effective search space: 168727296
Effective search space used: 168727296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)