RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17304
         (119 letters)



>d1teja_ g.20.1.1 (A:) Schistatin {Saw-scaled viper (Echis
          carinatus), different isoforms [TaxId: 40353]}
          Length = 62

 Score = 60.2 bits (146), Expect = 3e-14
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 28 KDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECDLPEWCTGTSGECPADE 87
           +PCCD + CK +    C  GPCC+NCK    G IC+ A+ + +  ++CTG + +CP + 
Sbjct: 2  VNPCCDPVICKPRDGEHCISGPCCNNCKFLNSGTICQRARGDGN-HDYCTGITTDCPRNR 60

Query: 88 F 88
          +
Sbjct: 61 Y 61


>d1j2la_ g.20.1.1 (A:) Flavoridin (triflavin) {Habu snake
          (Trimeresurus flavoviridis) [TaxId: 88087]}
          Length = 68

 Score = 60.2 bits (146), Expect = 4e-14
 Identities = 34/70 (48%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 15 EDCDCGSIDECHEKDPCCDAITCKLKKESQCADGPCCDNCKLRPFGHICREAKTECDLPE 74
          E+CDCGS       +PCCDA TCKL+  +QCADG CCD C+ +    ICR A       +
Sbjct: 2  EECDCGS-----PSNPCCDAATCKLRPGAQCADGLCCDQCRFKKKRTICRIA-RGDFPDD 55

Query: 75 WCTGTSGECP 84
           CTG S +CP
Sbjct: 56 RCTGQSADCP 65


>d2echa_ g.20.1.1 (A:) Echistatin {Saw-scaled viper (Echis
          carinatus) [TaxId: 40353]}
          Length = 49

 Score = 56.6 bits (137), Expect = 6e-13
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 44 QCADGPCCDNCKLRPFGHICREAKTECDLPEWCTGTSGECPADEFKKNG 92
          +C  GPCC NCK    G IC+ A    D+ ++C G + +CP +  K   
Sbjct: 1  ECESGPCCRNCKFLKEGTICKRA-RGDDMDDYCNGKTCDCPRNPHKGPA 48


>d1mpza_ g.20.1.1 (A:) Obtustatin {Blunt-nosed viper (Vipera
          lebetina obtusa) [TaxId: 209528]}
          Length = 41

 Score = 45.4 bits (108), Expect = 1e-08
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 45 CADGPCCDNCKLRPFGHICREAKTECDLPEWCTGTSGECPA 85
          C  GPCC  CKL+P G  C +         +CTG S +CP 
Sbjct: 1  CTTGPCCRQCKLKPAGTTCWK---TSLTSHYCTGKSCDCPL 38


>d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD
           (porphobilinogen synthase) {Prosthecochloris
           vibrioformis [TaxId: 1098]}
          Length = 319

 Score = 28.3 bits (63), Expect = 0.23
 Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 3/36 (8%)

Query: 50  CCDNCKLRP---FGHICREAKTECDLPEWCTGTSGE 82
             D   ++P   +  I    K   D+P      SGE
Sbjct: 237 GADIVMVKPGLAYLDIVWRTKERFDVPVAIYHVSGE 272


>d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
           (porphobilinogen synthase) {Escherichia coli [TaxId:
           562]}
          Length = 323

 Score = 26.8 bits (59), Expect = 0.61
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 3/36 (8%)

Query: 50  CCDNCKLRP---FGHICREAKTECDLPEWCTGTSGE 82
             D   ++P   +  I RE +   +LP      SGE
Sbjct: 239 GADCLMVKPAGAYLDIVRELRERTELPIGAYQVSGE 274


>d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
           (porphobilinogen synthase) {Pseudomonas aeruginosa
           [TaxId: 287]}
          Length = 329

 Score = 26.4 bits (58), Expect = 0.88
 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 3/36 (8%)

Query: 50  CCDNCKLRP---FGHICREAKTECDLPEWCTGTSGE 82
             D   ++P   +  I R  K E   P +    SGE
Sbjct: 247 GADMVMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGE 282


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.142    0.524 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 536,041
Number of extensions: 27455
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 83
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)