BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17305
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZOF|A Chain A, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
Mn Bestatin
pdb|2ZOF|B Chain B, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
Mn Bestatin
pdb|2ZOG|A Chain A, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
Zn Bestatin
pdb|2ZOG|B Chain B, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
Zn Bestatin
Length = 479
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 113/161 (70%)
Query: 3 SSAEYLAEISEYVESNKNKFIENLKEAVAIEXXXXXXQHRPQTINMIHYFADKLKQLGAT 62
+S L + +Y++ N++++++ L E VAI+ + R + M+ A +++LG +
Sbjct: 3 NSMSALKAVFQYIDENQDRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADVQRLGGS 62
Query: 63 VEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVL 122
VE+ DIG Q LP+G I PP++LG LG+D K TV +YGHLDVQPA EDGW++EPF L
Sbjct: 63 VELVDIGKQKLPDGSEIPLPPILLGKLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTL 122
Query: 123 TLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
++ KLYGRG++DDKGPV GW++A+EA+Q+T + +PVN++
Sbjct: 123 VEREGKLYGRGSTDDKGPVAGWMNALEAYQKTGQEIPVNLR 163
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/57 (64%), Positives = 51/57 (89%), Gaps = 2/57 (3%)
Query: 157 NVPVNI--KEVTGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV 211
++PV + +E TGKNV+LLP+G++DDGAHSQNEK++ NYIEGTK+LAAYLYE+S++
Sbjct: 421 SIPVTLTFQEATGKNVMLLPVGSADDGAHSQNEKLNRLNYIEGTKMLAAYLYEVSQL 477
>pdb|3DLJ|A Chain A, Crystal Structure Of Human Carnosine Dipeptidase 1
pdb|3DLJ|B Chain B, Crystal Structure Of Human Carnosine Dipeptidase 1
Length = 485
Score = 164 bits (415), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 113/160 (70%), Gaps = 2/160 (1%)
Query: 8 LAEISEYVESNKNKFIENLKEAVAIEXXXXXX--QHRPQTINMIHYFADKLKQLGATVEI 65
L ++ +Y++ ++++F++ LKE VAIE + R + M+ AD L++LGA V
Sbjct: 13 LEKVFQYIDLHQDEFVQTLKEWVAIESDSVQPVPRFRQELFRMMAVAADTLQRLGARVAS 72
Query: 66 CDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLK 125
D+G Q LP+G+S+ PPVIL LG+D K TV YGHLDVQPA++ DGW T+P+VLT
Sbjct: 73 VDMGPQQLPDGQSLPIPPVILAELGSDPTKGTVCFYGHLDVQPADRGDGWLTDPYVLTEV 132
Query: 126 DEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165
D KLYGRGA+D+KGPVL W++A+ AF+ ++++PVNIK +
Sbjct: 133 DGKLYGRGATDNKGPVLAWINAVSAFRALEQDLPVNIKFI 172
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 40/50 (80%)
Query: 162 IKEVTGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV 211
+E+ K+V+L+P+GA DDG HSQNEKI+ NYIEGTKL AA+ E++++
Sbjct: 435 FQEIVHKSVVLIPLGAVDDGEHSQNEKINRWNYIEGTKLFAAFFLEMAQL 484
>pdb|2POK|A Chain A, Crystal Structure Of A M20 Family Metallo Peptidase From
Streptococcus Pneumoniae
pdb|2POK|B Chain B, Crystal Structure Of A M20 Family Metallo Peptidase From
Streptococcus Pneumoniae
Length = 481
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 10/113 (8%)
Query: 50 HYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPA 109
+Y + K++GA VEI ES P V+ + T++ Y H D PA
Sbjct: 71 NYLGEIFKRVGAEVEI----------DESYTAPFVMAHFKSSRPDAKTLIFYNHYDTVPA 120
Query: 110 EKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNI 162
+ + W +PF L++++ +YGRG DDKG + L A+ + Q ++PVNI
Sbjct: 121 DGDQVWTEDPFTLSVRNGFMYGRGVDDDKGHITARLSALRKYMQHHDDLPVNI 173
>pdb|3PFE|A Chain A, Crystal Structure Of A M20a Metallo Peptidase (Dape,
Lpg0809) From Legionella Pneumophila Subsp. Pneumophila
Str. Philadelphia 1 At 1.50 A Resolution
Length = 472
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 15/121 (12%)
Query: 44 QTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGH 103
Q +N I + G T+EI + N+T P++ + + TVL+YGH
Sbjct: 49 QAVNHIANWCKSHAPKGXTLEIVRLKNRT----------PLLFXEIPG-QIDDTVLLYGH 97
Query: 104 LDVQPAEKEDGWNTE--PFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVN 161
LD QP + GW+ + P+ LK+ LYGRG +DD L AI A +Q P
Sbjct: 98 LDKQP--EXSGWSDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRC 155
Query: 162 I 162
I
Sbjct: 156 I 156
>pdb|1LFW|A Chain A, Crystal Structure Of Pepv
Length = 470
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 7/64 (10%)
Query: 100 VYGHLDVQPAEKEDGWNTEPFVLTLKDE-KLYGRGASDDKGPVL----GWLHAIEAFQQT 154
+ GH+DV PA +GW +PF + + +E ++YGRG++DDKGP L G L EA +
Sbjct: 84 IIGHMDVVPAG--EGWTRDPFKMEIDEEGRIYGRGSADDKGPSLTAYYGMLLLKEAGFKP 141
Query: 155 KKNV 158
KK +
Sbjct: 142 KKKI 145
>pdb|4H2K|A Chain A, Crystal Structure Of The Catalytic Domain Of
Succinyl-Diaminopimelate Desuccinylase From Haemophilus
Influenzae
pdb|4H2K|B Chain B, Crystal Structure Of The Catalytic Domain Of
Succinyl-Diaminopimelate Desuccinylase From Haemophilus
Influenzae
Length = 269
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 94 AKH-----TVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAI 148
AKH + GH DV P E+ W++ PF + D LYGRGA+D KG + + A
Sbjct: 56 AKHGTSEPVIAFAGHTDVVPTGDENQWSSPPFSAEIIDGMLYGRGAADMKGSLAAMIVAA 115
Query: 149 EAFQQTKKN 157
E + + N
Sbjct: 116 EEYVKANPN 124
>pdb|3IC1|A Chain A, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate
Desuccinylase From Haemophilus Influenzae
pdb|3IC1|B Chain B, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate
Desuccinylase From Haemophilus Influenzae
pdb|3ISZ|A Chain A, Crystal Structure Of Mono-zinc Form Of
Succinyl-diaminopimelate Desuccinylase From Haemophilus
Influenzae
pdb|3ISZ|B Chain B, Crystal Structure Of Mono-zinc Form Of
Succinyl-diaminopimelate Desuccinylase From Haemophilus
Influenzae
Length = 377
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 94 AKH-----TVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAI 148
AKH + GH DV P E+ W++ PF + D LYGRGA+D KG + + A
Sbjct: 53 AKHGTSEPVIAFAGHTDVVPTGDENQWSSPPFSAEIIDGMLYGRGAADMKGSLAAMIVAA 112
Query: 149 EAFQQTKKN 157
E + + N
Sbjct: 113 EEYVKANPN 121
>pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
pdb|1VGY|B Chain B, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
Length = 393
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 98 VLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAF 151
V GH DV P + W++ PF +D +LYGRGA+D K + ++ A E F
Sbjct: 65 VCFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADXKTSIACFVTACERF 118
>pdb|3T68|A Chain A, Crystal Structure Of The Catalytic Domain Of Dape Protein
From V.Cholerea
pdb|3T6M|A Chain A, Crystal Structure Of The Catalytic Domain Of Dape Protein
From V.Cholerea In The Zn Bound Form
Length = 268
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 102 GHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAF 151
GH DV PA W+T PF T+ D L+GRGA+D KG + + A+E F
Sbjct: 69 GHTDVVPAGPLSQWHTPPFEPTVIDGFLHGRGAADMKGSLACMIVAVERF 118
>pdb|3KHZ|A Chain A, Crystal Structure Of R350a Mutant Of Staphylococcus Aureus
Metallopeptidase (SapepDAPE) IN THE APO-Form
pdb|3KHZ|B Chain B, Crystal Structure Of R350a Mutant Of Staphylococcus Aureus
Metallopeptidase (SapepDAPE) IN THE APO-Form
Length = 492
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 85 ILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGW 144
I G + K + + H+DV PA DGW++ PF + ++ + RG DDKGP +
Sbjct: 89 IAGRIEAGKGNDVLGILCHVDVVPAG--DGWDSNPFEPVVTEDAIIARGTLDDKGPTIAA 146
Query: 145 LHAIEAFQQTKKNVPVNIKEVTGKN 169
+AI+ + + I + G +
Sbjct: 147 YYAIKILEDMNVDWKKRIHMIIGTD 171
>pdb|3KHX|A Chain A, Crystal Structure Of Staphylococcus Aureus
Metallopeptidase (SapepDAPE) IN THE APO-Form
pdb|3KHX|B Chain B, Crystal Structure Of Staphylococcus Aureus
Metallopeptidase (SapepDAPE) IN THE APO-Form
pdb|3KI9|A Chain A, Crystal Structure Of Staphylococcus Aureus
Metallopeptidase (SapepDAPE) IN THE MN2+ BOUND FORM
Length = 492
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 85 ILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGW 144
I G + K + + H+DV PA DGW++ PF + ++ + RG DDKGP +
Sbjct: 89 IAGRIEAGKGNDVLGILCHVDVVPAG--DGWDSNPFEPVVTEDAIIARGTLDDKGPTIAA 146
Query: 145 LHAIEAFQQTKKNVPVNIKEVTGKN 169
+AI+ + + I + G +
Sbjct: 147 YYAIKILEDMNVDWKKRIHMIIGTD 171
>pdb|3PFO|A Chain A, Crystal Structure Of A Putative Acetylornithine
Deacetylase (Rpa2325) From Rhodopseudomonas Palustris
Cga009 At 1.90 A Resolution
pdb|3PFO|B Chain B, Crystal Structure Of A Putative Acetylornithine
Deacetylase (Rpa2325) From Rhodopseudomonas Palustris
Cga009 At 1.90 A Resolution
Length = 433
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 85 ILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGW 144
++ +D ++++ GH+DV P D W+ P+ ++D GRGA D KG V
Sbjct: 93 VVATADSDGKGRSLILQGHIDVVPEGPVDLWSDPPYEAKVRDGWXIGRGAQDXKGGVSAX 152
Query: 145 LHAIEAFQQT--KKNVPVNIKEVT 166
+ A++A + + V+++ VT
Sbjct: 153 IFALDAIRTAGYAPDARVHVQTVT 176
>pdb|3CT9|A Chain A, Crystal Structure Of A Putative Zinc Peptidase
(Np_812461.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 2.31 A Resolution
pdb|3CT9|B Chain B, Crystal Structure Of A Putative Zinc Peptidase
(Np_812461.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 2.31 A Resolution
Length = 356
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 92 DKAKHTVLVYGHLD-VQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEA 150
D K T+L+ H+D V+P +GW +PF ++ KLYG G++D V+ L
Sbjct: 63 DLKKPTILLNSHIDTVKPV---NGWRKDPFTPREENGKLYGLGSNDAGASVVSLLQVFLQ 119
Query: 151 FQQTKKN 157
+T +N
Sbjct: 120 LCRTSQN 126
>pdb|2RB7|A Chain A, Crystal Structure Of Co-Catalytic Metallopeptidase
(Yp_387682.1) From Desulfovibrio Desulfuricans G20 At
1.60 A Resolution
pdb|2RB7|B Chain B, Crystal Structure Of Co-Catalytic Metallopeptidase
(Yp_387682.1) From Desulfovibrio Desulfuricans G20 At
1.60 A Resolution
Length = 364
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 18/90 (20%)
Query: 92 DKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPV-LGW------ 144
+K + +L+ H+DV AE + FV +++++LYGRGA+DDK V LG
Sbjct: 62 EKGRAGLLLXAHIDVVDAEDD------LFVPRVENDRLYGRGANDDKYAVALGLVXFRDR 115
Query: 145 LHAIEAFQQTKKNVPVNI-----KEVTGKN 169
L+A++A +++K+ + + +E+ G N
Sbjct: 116 LNALKAAGRSQKDXALGLLITGDEEIGGXN 145
>pdb|1X3M|A Chain A, Crystal Structure Of Adp Bound Propionate Kinase (tdcd)
From Salmonella Typhimurium
pdb|1X3N|A Chain A, Crystal Structure Of Amppnp Bound Propionate Kinase (Tdcd)
From Salmonella Typhimurium
pdb|2E1Y|A Chain A, Crystal Structure Of Propionate Kinase (Tdcd) From
Salmonella Typhimurium
pdb|2E1Z|A Chain A, Crystal Structure Of Salmonella Typhimurium Propionate
Kinase (Tdcd) In Complex With Diadenosine Tetraphosphate
(Ap4a) Obtained After Co-Crystallization With Atp
pdb|2E20|A Chain A, Crystal Structure Of Salmonella Typhimurium Propionate
Kinase (Tdcd) In Complex With Diadenosine Tetraphosphate
(Ap4a)
Length = 415
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 80 KYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEK 128
++P V++ N G+ K +VL DV A DG NTE L++ +K
Sbjct: 16 EFPVVLVINCGSSSIKFSVLDVATCDVLMAGIADGMNTENAFLSINGDK 64
>pdb|3P2N|A Chain A, Discovery And Structural Characterization Of A New
Glycoside Hydrolase Family Abundant In Coastal Waters
That Was Annotated As 'hypothetical Protein'
pdb|3P2N|B Chain B, Discovery And Structural Characterization Of A New
Glycoside Hydrolase Family Abundant In Coastal Waters
That Was Annotated As 'hypothetical Protein'
Length = 408
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 89 LGNDKAKHTVLVYGHLDVQPAEKEDGWN-TEPFVLTLKDEKLYGRGASDDKG----PVLG 143
G D K V + D+ A EDGW E + EK GA DD+ ++
Sbjct: 122 FGGDIEKDKVFPWDRCDIWYATSEDGWTWKEEGPAVTRGEK----GAYDDRSVFTVEIMK 177
Query: 144 WLHAIEAFQQTKKNVPVNIKEVTGKNVLLLPMGASDDGAHSQNE 187
W QT K+ P N++ KN + L S DG +++E
Sbjct: 178 WEDKYYLCYQTVKS-PYNVRV---KNQVGLAWADSPDGPWTKSE 217
>pdb|4GKF|A Chain A, Crystal Structure And Characterization Of Cmr5 Protein
From Pyrococcus Furiosus
pdb|4GKF|B Chain B, Crystal Structure And Characterization Of Cmr5 Protein
From Pyrococcus Furiosus
Length = 169
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 81 YPPVILGNLGNDKAKHTVLVYGHL 104
YPP + LGNDK +H +L+Y H+
Sbjct: 89 YPPRFIEKLGNDKDEH-LLLYLHI 111
>pdb|1XC3|A Chain A, Structure Of A Putative Fructokinase From Bacillus
Subtilis
Length = 302
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 86 LGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDD 137
G + NDK T YG + P + GW PF+ T+K+E G S D
Sbjct: 61 FGPVDNDKTSQT---YGTITATP---KAGWRHYPFLQTVKNEMKIPVGFSTD 106
>pdb|4F1Z|A Chain A, Crystal Structures Reveal The Multi-Ligand Binding
Mechanism Of The Staphylococcus Aureus Clfb
pdb|4F20|A Chain A, Crystal Structures Reveal The Multi-Ligand Binding
Mechanism Of The Staphylococcus Aureus Clfb
pdb|4F24|A Chain A, Crystal Structures Reveal The Multi-Ligand Binding
Mechanism Of The Staphylococcus Aureus Clfb
Length = 363
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 25/77 (32%)
Query: 78 SIKYPPVILGNLGNDKAKHTVLVYGHLD--------------VQPAEKED----GWNTEP 119
S KY V N G+ + VLV GH D + PA +D GWN E
Sbjct: 288 SYKYDNVASINFGDINKTYVVLVEGHYDNTGKNLKTQVIQENIDPATGKDYSIFGWNNEN 347
Query: 120 FVLTLKDEKLYGRGASD 136
V YG G++D
Sbjct: 348 VV-------RYGGGSAD 357
>pdb|4F27|A Chain A, Crystal Structures Reveal The Multi-Ligand Binding
Mechanism Of The Staphylococcus Aureus Clfb
Length = 363
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 25/77 (32%)
Query: 78 SIKYPPVILGNLGNDKAKHTVLVYGHLD--------------VQPAEKED----GWNTEP 119
S KY V N G+ + VLV GH D + PA +D GWN E
Sbjct: 288 SYKYDNVASINFGDINKTYVVLVEGHYDNTGKNLKTQVIQENIDPATGKDYSIFGWNNEN 347
Query: 120 FVLTLKDEKLYGRGASD 136
V YG G++D
Sbjct: 348 VV-------RYGGGSAD 357
>pdb|3LM9|A Chain A, Crystal Structure Of Fructokinase With Adp And Fructose
Bound In The Active Site
Length = 302
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 86 LGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDD 137
G + NDK T YG + P + GW PF+ T+K+E G S D
Sbjct: 61 FGPVDNDKTSQT---YGTITATP---KAGWRHYPFLQTVKNEXKIPVGFSTD 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.131 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,627,015
Number of Sequences: 62578
Number of extensions: 281148
Number of successful extensions: 458
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 440
Number of HSP's gapped (non-prelim): 25
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (23.5 bits)