Query psy17305
Match_columns 223
No_of_seqs 205 out of 2096
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 18:35:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17305.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17305hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08201 hypothetical protein; 100.0 1.1E-31 2.5E-36 241.6 20.1 191 7-211 1-239 (456)
2 PRK06915 acetylornithine deace 100.0 1.6E-31 3.5E-36 238.3 20.7 200 4-213 1-244 (422)
3 PRK06837 acetylornithine deace 100.0 5.5E-31 1.2E-35 235.4 21.1 199 5-213 5-248 (427)
4 PRK09104 hypothetical protein; 100.0 1.8E-30 3.8E-35 234.4 21.3 190 8-211 5-247 (464)
5 PRK07907 hypothetical protein; 100.0 1.8E-30 3.9E-35 233.5 21.1 187 8-211 6-240 (449)
6 PRK08596 acetylornithine deace 100.0 5.1E-30 1.1E-34 228.8 21.2 186 10-212 3-236 (421)
7 PRK13013 succinyl-diaminopimel 100.0 7.7E-30 1.7E-34 227.7 21.0 191 10-211 4-237 (427)
8 PRK07338 hypothetical protein; 100.0 3.1E-30 6.8E-35 228.7 17.9 195 6-213 3-243 (402)
9 KOG2276|consensus 100.0 9.1E-30 2E-34 217.4 16.2 159 8-166 4-162 (473)
10 PRK06446 hypothetical protein; 100.0 2.8E-29 6E-34 225.0 19.0 172 20-211 2-220 (436)
11 PRK13004 peptidase; Reviewed 100.0 4.6E-29 9.9E-34 221.2 19.8 182 8-214 3-223 (399)
12 PRK07473 carboxypeptidase; Pro 100.0 6.1E-29 1.3E-33 218.9 18.8 176 18-212 9-225 (376)
13 PRK13983 diaminopimelate amino 100.0 1.1E-28 2.5E-33 218.1 19.6 184 18-210 3-232 (400)
14 TIGR03320 ygeY M20/DapE family 100.0 1.1E-28 2.5E-33 218.3 19.5 179 10-213 3-220 (395)
15 PRK08588 succinyl-diaminopimel 100.0 1E-28 2.2E-33 217.2 18.4 171 20-212 2-211 (377)
16 PRK07205 hypothetical protein; 100.0 7.2E-29 1.6E-33 222.8 17.4 135 17-166 8-146 (444)
17 TIGR03526 selenium_YgeY putati 100.0 2.6E-28 5.5E-33 216.2 19.8 179 10-213 3-220 (395)
18 PRK06133 glutamate carboxypept 100.0 4.8E-28 1E-32 215.5 20.2 185 8-212 25-249 (410)
19 PRK13009 succinyl-diaminopimel 100.0 3.8E-28 8.3E-33 213.2 19.1 168 21-211 3-217 (375)
20 PRK07318 dipeptidase PepV; Rev 100.0 5.5E-28 1.2E-32 218.3 16.4 138 10-165 4-147 (466)
21 TIGR01246 dapE_proteo succinyl 100.0 1.4E-27 2.9E-32 209.6 18.4 166 23-211 2-214 (370)
22 TIGR01886 dipeptidase dipeptid 100.0 1.5E-27 3.3E-32 215.4 18.8 138 11-166 4-147 (466)
23 PRK07079 hypothetical protein; 100.0 3.6E-27 7.9E-32 213.1 20.0 146 6-165 5-157 (469)
24 PRK07906 hypothetical protein; 100.0 2.4E-27 5.3E-32 211.8 18.1 133 23-166 2-135 (426)
25 PRK09133 hypothetical protein; 100.0 7.9E-27 1.7E-31 211.1 19.0 176 18-211 35-262 (472)
26 TIGR01910 DapE-ArgE acetylorni 99.9 5.1E-27 1.1E-31 206.4 16.8 178 24-214 2-219 (375)
27 COG0624 ArgE Acetylornithine d 99.9 1.3E-26 2.9E-31 205.9 19.1 182 15-212 8-241 (409)
28 TIGR01892 AcOrn-deacetyl acety 99.9 1.1E-26 2.3E-31 203.1 17.6 169 24-213 1-207 (364)
29 TIGR01880 Ac-peptdase-euk N-ac 99.9 3.1E-26 6.6E-31 203.1 20.7 173 20-212 9-229 (400)
30 PRK05111 acetylornithine deace 99.9 2E-26 4.4E-31 202.9 18.6 176 20-212 5-219 (383)
31 PRK07522 acetylornithine deace 99.9 3E-26 6.4E-31 201.9 18.6 172 20-213 4-216 (385)
32 PRK08651 succinyl-diaminopimel 99.9 7.2E-26 1.6E-30 200.1 18.3 179 18-211 4-221 (394)
33 PRK08262 hypothetical protein; 99.9 2E-25 4.3E-30 202.6 17.4 138 16-165 40-183 (486)
34 PRK08737 acetylornithine deace 99.9 1.6E-25 3.4E-30 196.4 15.3 169 19-211 5-205 (364)
35 TIGR01900 dapE-gram_pos succin 99.9 1.5E-25 3.1E-30 197.3 14.5 165 25-213 1-220 (373)
36 PRK15026 aminoacyl-histidine d 99.9 3.1E-25 6.7E-30 200.8 16.1 166 19-211 9-241 (485)
37 PRK04443 acetyl-lysine deacety 99.9 1.6E-24 3.5E-29 188.9 16.8 154 20-213 6-197 (348)
38 PRK08554 peptidase; Reviewed 99.9 3.5E-24 7.7E-29 192.1 16.4 129 21-165 2-130 (438)
39 PRK06156 hypothetical protein; 99.9 5.3E-24 1.1E-28 194.7 17.8 134 16-166 42-184 (520)
40 TIGR01893 aa-his-dipept aminoa 99.9 5.7E-24 1.2E-28 192.7 16.1 169 19-214 3-238 (477)
41 PRK13381 peptidase T; Provisio 99.9 6.4E-24 1.4E-28 188.6 14.2 175 21-212 2-248 (404)
42 TIGR01887 dipeptidaselike dipe 99.9 1.4E-23 3.1E-28 188.6 16.0 129 20-166 2-136 (447)
43 PRK08652 acetylornithine deace 99.9 3.3E-23 7.2E-28 180.0 17.0 157 20-213 2-194 (347)
44 PRK05469 peptidase T; Provisio 99.9 1.4E-23 3E-28 186.7 14.1 176 20-212 2-250 (408)
45 PRK13007 succinyl-diaminopimel 99.9 3.8E-23 8.3E-28 180.1 16.1 157 20-213 7-206 (352)
46 TIGR01883 PepT-like peptidase 99.9 3.9E-23 8.5E-28 180.7 15.9 167 21-211 1-210 (361)
47 PRK00466 acetyl-lysine deacety 99.9 1.4E-22 3E-27 176.5 17.1 153 20-212 10-196 (346)
48 KOG2275|consensus 99.9 6.3E-22 1.4E-26 170.6 18.7 134 20-166 25-159 (420)
49 TIGR01891 amidohydrolases amid 99.9 6.7E-22 1.4E-26 173.3 15.4 161 23-212 2-208 (363)
50 TIGR01882 peptidase-T peptidas 99.9 1.9E-21 4E-26 173.2 13.9 171 20-210 3-250 (410)
51 TIGR01902 dapE-lys-deAc N-acet 99.9 7.7E-21 1.7E-25 164.9 14.9 101 25-156 2-102 (336)
52 PLN02693 IAA-amino acid hydrol 99.8 7.2E-20 1.6E-24 164.2 18.6 173 9-212 34-254 (437)
53 PLN02280 IAA-amino acid hydrol 99.8 1.9E-19 4.2E-24 162.8 17.3 164 19-213 96-305 (478)
54 PRK12891 allantoate amidohydro 99.8 1.5E-18 3.3E-23 154.7 14.9 110 20-165 10-124 (414)
55 TIGR03176 AllC allantoate amid 99.8 2.3E-18 4.9E-23 153.3 14.1 134 20-199 3-141 (406)
56 PRK12892 allantoate amidohydro 99.8 1.9E-18 4.1E-23 153.8 13.2 110 19-164 9-121 (412)
57 PRK09290 allantoate amidohydro 99.8 2.8E-18 6.1E-23 152.9 14.0 109 19-163 6-119 (413)
58 PRK12893 allantoate amidohydro 99.8 7.5E-18 1.6E-22 150.0 15.6 111 19-165 9-124 (412)
59 PRK12890 allantoate amidohydro 99.8 8.6E-18 1.9E-22 149.8 15.0 109 20-164 9-121 (414)
60 PRK13590 putative bifunctional 99.8 1.3E-17 2.9E-22 154.6 14.1 134 19-198 180-322 (591)
61 PRK13799 unknown domain/N-carb 99.7 1.5E-17 3.3E-22 154.2 13.8 133 19-197 180-321 (591)
62 PF01546 Peptidase_M20: Peptid 99.7 2.1E-16 4.6E-21 125.5 7.9 66 99-166 1-66 (189)
63 TIGR01879 hydantase amidase, h 99.6 3E-15 6.6E-20 133.0 13.3 130 22-197 3-137 (401)
64 COG4187 RocB Arginine degradat 99.6 2E-14 4.2E-19 125.0 10.5 138 19-166 7-169 (553)
65 TIGR03106 trio_M42_hydro hydro 99.5 1.5E-13 3.3E-18 119.5 13.7 125 20-165 3-212 (343)
66 PRK10199 alkaline phosphatase 99.5 3.6E-13 7.8E-18 116.3 14.1 114 42-165 51-170 (346)
67 COG1473 AbgB Metal-dependent a 99.3 4.8E-11 1E-15 105.3 15.6 175 11-215 4-225 (392)
68 COG1363 FrvX Cellulase M and r 99.1 6.1E-10 1.3E-14 96.6 12.0 68 20-107 2-69 (355)
69 TIGR03107 glu_aminopep glutamy 99.0 3.2E-09 7E-14 92.6 10.5 65 24-108 2-67 (350)
70 PRK09864 putative peptidase; P 98.9 8.7E-09 1.9E-13 90.0 10.3 64 23-108 3-66 (356)
71 PRK09961 exoaminopeptidase; Pr 98.8 1.7E-08 3.6E-13 88.2 7.9 66 23-109 3-68 (344)
72 COG2195 PepD Di- and tripeptid 98.6 1.4E-07 3E-12 83.8 9.1 179 19-208 4-252 (414)
73 KOG2194|consensus 98.6 4.8E-07 1E-11 85.4 11.1 123 20-166 57-193 (834)
74 PF04389 Peptidase_M28: Peptid 98.0 8.7E-06 1.9E-10 64.2 5.4 55 97-166 2-56 (179)
75 KOG3946|consensus 97.0 0.013 2.7E-07 49.4 10.7 109 19-154 50-159 (338)
76 PF05343 Peptidase_M42: M42 gl 96.6 0.0026 5.6E-08 54.5 4.5 39 125-166 124-162 (292)
77 COG2234 Iap Predicted aminopep 96.1 0.012 2.7E-07 52.7 6.1 48 95-165 208-255 (435)
78 KOG2526|consensus 94.9 0.34 7.3E-06 43.4 10.3 96 50-166 165-271 (555)
79 KOG2276|consensus 94.6 0.015 3.3E-07 51.2 1.3 47 164-210 426-472 (473)
80 KOG2195|consensus 93.8 0.21 4.6E-06 47.7 7.1 61 83-166 339-403 (702)
81 PF05450 Nicastrin: Nicastrin; 89.8 0.97 2.1E-05 37.4 5.9 54 96-166 1-57 (234)
82 COG4882 Predicted aminopeptida 87.0 2 4.3E-05 37.8 6.1 49 84-157 180-228 (486)
83 PRK09961 exoaminopeptidase; Pr 83.9 1.5 3.2E-05 38.4 4.1 37 124-163 155-191 (344)
84 PRK00913 multifunctional amino 81.1 33 0.00072 31.6 11.7 44 20-69 171-214 (483)
85 PTZ00412 leucyl aminopeptidase 80.2 21 0.00046 33.3 10.2 42 20-67 212-254 (569)
86 PF00883 Peptidase_M17: Cytoso 79.2 13 0.00029 32.1 8.1 119 24-165 2-134 (311)
87 PF07687 M20_dimer: Peptidase 77.9 1.9 4.2E-05 30.4 2.3 33 177-213 13-45 (111)
88 PRK02813 putative aminopeptida 76.5 32 0.0007 31.1 10.2 76 22-107 7-88 (428)
89 PTZ00371 aspartyl aminopeptida 73.6 22 0.00048 32.6 8.4 76 22-107 8-90 (465)
90 COG0260 PepB Leucyl aminopepti 65.9 75 0.0016 29.3 10.1 42 20-68 167-209 (485)
91 KOG2597|consensus 61.0 1.4E+02 0.0031 27.7 12.7 124 20-165 189-324 (513)
92 PRK02256 putative aminopeptida 54.4 83 0.0018 28.9 8.3 58 46-107 42-105 (462)
93 COG4635 HemG Flavodoxin [Energ 44.8 22 0.00047 27.8 2.6 36 28-69 3-38 (175)
94 PF01726 LexA_DNA_bind: LexA D 44.2 81 0.0018 20.4 5.0 51 1-62 1-56 (65)
95 cd00433 Peptidase_M17 Cytosol 42.6 2.7E+02 0.0059 25.6 14.7 43 20-68 154-196 (468)
96 COG1362 LAP4 Aspartyl aminopep 40.7 1.1E+02 0.0025 27.6 6.8 56 46-107 24-90 (437)
97 PF09940 DUF2172: Domain of un 32.8 1.3E+02 0.0027 26.9 5.7 56 84-166 117-174 (386)
98 TIGR01879 hydantase amidase, h 31.0 40 0.00086 29.9 2.5 33 177-212 214-247 (401)
99 PF09211 DUF1958: Domain of un 26.0 37 0.00081 22.2 1.0 21 104-130 24-44 (65)
100 PRK13916 plasmid segregation p 25.9 2E+02 0.0043 19.9 4.5 41 15-62 10-50 (97)
101 PF02127 Peptidase_M18: Aminop 25.6 91 0.002 28.3 3.8 61 45-106 8-74 (432)
102 COG1979 Uncharacterized oxidor 24.3 1.3E+02 0.0028 26.5 4.3 50 16-69 295-344 (384)
103 PF02169 LPP20: LPP20 lipoprot 21.8 1.5E+02 0.0032 19.9 3.6 29 123-153 8-36 (92)
104 PF15643 Tox-PL-2: Papain fold 21.4 1.7E+02 0.0037 20.9 3.7 26 44-69 20-45 (100)
105 COG2195 PepD Di- and tripeptid 20.9 81 0.0018 28.5 2.5 54 95-150 61-118 (414)
No 1
>PRK08201 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-31 Score=241.65 Aligned_cols=191 Identities=33% Similarity=0.522 Sum_probs=151.6
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCc-EEEEecCCCCCCCCCCCCCCcEE
Q psy17305 7 YLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGAT-VEICDIGNQTLPNGESIKYPPVI 85 (223)
Q Consensus 7 ~~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~-~~~~~~~~~~~~~g~~~~~~~nl 85 (223)
|++++.++++++.++++++|++||+|||+|+.....+++.++++||.++|+++|++ ++++..+ + .+||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~LV~i~Svs~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~------~-----~~~l 69 (456)
T PRK08201 1 MMQQVEAYLRERREAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLEHVEIMETA------G-----HPIV 69 (456)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHcCCCeEEEEecC------C-----CCEE
Confidence 35688899999999999999999999999864322335788999999999999996 5565543 2 1699
Q ss_pred EEEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305 86 LGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165 (223)
Q Consensus 86 ~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~ 165 (223)
++++.+.+++|+|+|+||+||||+++.+.|+++||.+.++||+|||||++|||+|++++++|+++|++.+..++++|.++
T Consensus 70 ~a~~~~~~~~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~~~~~~i~~~ 149 (456)
T PRK08201 70 YADWLHAPGKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVEGTLPVNVKFC 149 (456)
T ss_pred EEEecCCCCCCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 99874444568999999999999986678999999999999999999999999999999999999988776677777654
Q ss_pred c------cc-----------------ceeeccCccc----------------------CCCC--cCCCCccceecccchh
Q psy17305 166 T------GK-----------------NVLLLPMGAS----------------------DDGA--HSQNEKIDVRNYIEGT 198 (223)
Q Consensus 166 ~------g~-----------------~~~~~~~g~~----------------------~~~a--hag~~~~~g~~ai~g~ 198 (223)
+ |+ .+++.+++.. ..++ |++..+..+.||+.
T Consensus 150 ~~~dEE~g~~g~~~~l~~~~~~~~~d~~ii~e~~~~~~~~~~i~~g~kG~~~~~l~v~G~~~~~Hs~~~~~~~~nAi~-- 227 (456)
T PRK08201 150 IEGEEEIGSPNLDSFVEEEKDKLAADVVLISDTTLLGPGKPAICYGLRGLAALEIDVRGAKGDLHSGLYGGAVPNALH-- 227 (456)
T ss_pred EEcccccCCccHHHHHHhhHHhccCCEEEEeCCCcCCCCCEEEEEecCCeEEEEEEEEeCCCCCccccccCcCCCHHH--
Confidence 3 21 1344443321 1254 98877766789999
Q ss_pred hHHHHHHHHHHhh
Q psy17305 199 KLLAAYLYEISKV 211 (223)
Q Consensus 199 ~~~a~~~~~l~~l 211 (223)
.+++.+.+|..+
T Consensus 228 -~~~~~l~~l~~~ 239 (456)
T PRK08201 228 -ALVQLLASLHDE 239 (456)
T ss_pred -HHHHHHHhcCCC
Confidence 999999998764
No 2
>PRK06915 acetylornithine deacetylase; Validated
Probab=100.00 E-value=1.6e-31 Score=238.34 Aligned_cols=200 Identities=22% Similarity=0.376 Sum_probs=157.2
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCC---C----CC
Q psy17305 4 SAEYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTL---P----NG 76 (223)
Q Consensus 4 ~~~~~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~---~----~g 76 (223)
|+++++++.++++++.+++++++++|++|||+|+ .+..+++||+++|+++|++++++....... + ..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~lv~ips~s~------~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~ 74 (422)
T PRK06915 1 MEQLKKQICDYIESHEEEAVKLLKRLIQEKSVSG------DESGAQAIVIEKLRELGLDLDIWEPSFKKLKDHPYFVSPR 74 (422)
T ss_pred CcHHHHHHHHHHHhhHHHHHHHHHHHHhCCCCCc------chHHHHHHHHHHHHhcCCeeEEeecchhhhhcccccCCcc
Confidence 4577889999999999999999999999999997 577899999999999999988765431000 0 00
Q ss_pred CCCCCCcEEEEEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccC
Q psy17305 77 ESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKK 156 (223)
Q Consensus 77 ~~~~~~~nl~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~ 156 (223)
...+..+||++++++..+.|+|+|+|||||||+++.+.|+.+||.+.+++|+|||||++|||+|++++|.|+++|++.+.
T Consensus 75 ~~~~~~~nlia~~~g~~~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~ 154 (422)
T PRK06915 75 TSFSDSPNIVATLKGSGGGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGI 154 (422)
T ss_pred cccCCCceEEEEEcCCCCCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCC
Confidence 00001379999985433468999999999999987788999999999999999999999999999999999999999887
Q ss_pred CCceeeEEec------cc--------------ceeeccCcc-----------------cCCCCcCCCCccceecccchhh
Q psy17305 157 NVPVNIKEVT------GK--------------NVLLLPMGA-----------------SDDGAHSQNEKIDVRNYIEGTK 199 (223)
Q Consensus 157 ~~~~~i~~~~------g~--------------~~~~~~~g~-----------------~~~~ahag~~~~~g~~ai~g~~ 199 (223)
.++++|.+++ |+ .+++.++.. .+.++|++ .|..|.||+.
T Consensus 155 ~~~~~v~~~~~~dEE~g~~G~~~~~~~~~~~d~~i~~ep~~~~i~~~~~G~~~~~i~v~G~~~H~s-~p~~g~nAi~--- 230 (422)
T PRK06915 155 ELKGDVIFQSVIEEESGGAGTLAAILRGYKADGAIIPEPTNMKFFPKQQGSMWFRLHVKGKAAHGG-TRYEGVSAIE--- 230 (422)
T ss_pred CCCCcEEEEEecccccCCcchHHHHhcCcCCCEEEECCCCCccceeecccEEEEEEEEEeeccccC-CCCcCcCHHH---
Confidence 7777776442 21 122222211 02388988 6789999999
Q ss_pred HHHHHHHHHHhhhh
Q psy17305 200 LLAAYLYEISKVTQ 213 (223)
Q Consensus 200 ~~a~~~~~l~~l~~ 213 (223)
.+++++..|..+.+
T Consensus 231 ~~~~~~~~l~~l~~ 244 (422)
T PRK06915 231 KSMFVIDHLRKLEE 244 (422)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988865
No 3
>PRK06837 acetylornithine deacetylase; Provisional
Probab=99.98 E-value=5.5e-31 Score=235.42 Aligned_cols=199 Identities=20% Similarity=0.301 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCC---C-C---CC
Q psy17305 5 AEYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTL---P-N---GE 77 (223)
Q Consensus 5 ~~~~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~---~-~---g~ 77 (223)
.++++++.++++.+.++++++|++|++|||+|+ .+.++++||+++|+++|+++++...+.... + . ..
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~l~~li~ipS~s~------~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 78 (427)
T PRK06837 5 PDLTQRILAAVDAGFDAQVAFTQDLVRFPSTRG------AEAPCQDFLARAFRERGYEVDRWSIDPDDLKSHPGAGPVEI 78 (427)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCC------cHHHHHHHHHHHHHHCCCceEEecCCHHHhhhccccccccc
Confidence 347888999999999999999999999999997 467899999999999999988765431000 0 0 00
Q ss_pred CCCCCcEEEEEcCC-CCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccC
Q psy17305 78 SIKYPPVILGNLGN-DKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKK 156 (223)
Q Consensus 78 ~~~~~~nl~a~~~~-~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~ 156 (223)
..+..+||++.+++ .+..|+|+|+|||||||+++.+.|+.+||.+.+++|+|||||++|||+|++++|.|+++|++.+.
T Consensus 79 ~~~~~~nl~a~~~g~~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~ 158 (427)
T PRK06837 79 DYSGAPNVVGTYRPAGKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGL 158 (427)
T ss_pred ccCCCceEEEEecCCCCCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcCC
Confidence 00113799999854 33468999999999999987788999999999999999999999999999999999999999887
Q ss_pred CCceeeEEec-------cc-------------ceeeccCcc-----------------cCCCCcCCCCccceecccchhh
Q psy17305 157 NVPVNIKEVT-------GK-------------NVLLLPMGA-----------------SDDGAHSQNEKIDVRNYIEGTK 199 (223)
Q Consensus 157 ~~~~~i~~~~-------g~-------------~~~~~~~g~-----------------~~~~ahag~~~~~g~~ai~g~~ 199 (223)
.++++|.+++ |+ .+++.++.. .+.++|++ .|..|+||+.
T Consensus 159 ~~~~~i~~~~~~dEE~~g~g~~~~~~~~~~~d~~iv~ep~~~~i~~~~~G~~~~~i~v~G~~~Hs~-~p~~g~nAi~--- 234 (427)
T PRK06837 159 APAARVHFQSVIEEESTGNGALSTLQRGYRADACLIPEPTGEKLVRAQVGVIWFRLRVRGAPVHVR-EAGTGANAID--- 234 (427)
T ss_pred CCCCcEEEEEEeccccCCHhHHHHHhcCcCCCEEEEcCCCCCccccccceeEEEEEEEEeeccccC-CcccCcCHHH---
Confidence 7777775433 11 122333221 12388998 6799999999
Q ss_pred HHHHHHHHHHhhhh
Q psy17305 200 LLAAYLYEISKVTQ 213 (223)
Q Consensus 200 ~~a~~~~~l~~l~~ 213 (223)
.+++.+..|..+.+
T Consensus 235 ~~~~~i~~l~~~~~ 248 (427)
T PRK06837 235 AAYHLIQALRELEA 248 (427)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887764
No 4
>PRK09104 hypothetical protein; Validated
Probab=99.97 E-value=1.8e-30 Score=234.41 Aligned_cols=190 Identities=25% Similarity=0.398 Sum_probs=153.9
Q ss_pred HHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEE
Q psy17305 8 LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILG 87 (223)
Q Consensus 8 ~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a 87 (223)
+.++.++++.+.++++++|++||+|||+|+++...+++.++++||.++|+++|++++..+.. + .+||++
T Consensus 5 ~~~~~~~~~~~~~~~~~~L~~lv~i~Svs~~~~~~~~~~~~~~~l~~~l~~~G~~v~~~~~~------~-----~~~l~a 73 (464)
T PRK09104 5 LDPVLDHIDANLDASLERLFALLRIPSISTDPAYAADCRKAADWLVADLASLGFEASVRDTP------G-----HPMVVA 73 (464)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHHHHHHHCCCeEEEEecC------C-----CCEEEE
Confidence 45688999999999999999999999999865433457889999999999999999877643 2 169999
Q ss_pred EcCC-CCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCC-----eEEecCCCCCchhHHHHHHHHHHHHHccCCCcee
Q psy17305 88 NLGN-DKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDE-----KLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVN 161 (223)
Q Consensus 88 ~~~~-~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~-----~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~ 161 (223)
++++ ++..|+|+|+||+||||+++.+.|+++||.+.++++ +|||||++|||+|++++|+|+++|++.+..++++
T Consensus 74 ~~~g~~~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~~~~~~~~ 153 (464)
T PRK09104 74 HHEGPTGDAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAWKAVTGSLPVR 153 (464)
T ss_pred EecCCCCCCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHHHHhcCCCCCc
Confidence 9853 345789999999999999877789999999988764 6999999999999999999999999987677777
Q ss_pred eEEec------cc-----------------ceeeccCccc----------------------C--CCCcCCCCccceecc
Q psy17305 162 IKEVT------GK-----------------NVLLLPMGAS----------------------D--DGAHSQNEKIDVRNY 194 (223)
Q Consensus 162 i~~~~------g~-----------------~~~~~~~g~~----------------------~--~~ahag~~~~~g~~a 194 (223)
|.+++ |+ .+++.+++.. . .++|++..+..|.||
T Consensus 154 i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~~~~~~~~~~i~~~~kG~~~~~l~v~g~~~~~Hss~~~~~g~na 233 (464)
T PRK09104 154 VTILFEGEEESGSPSLVPFLEANAEELKADVALVCDTGMWDRETPAITTSLRGLVGEEVTITAADRDLHSGLFGGAAANP 233 (464)
T ss_pred EEEEEECccccCCccHHHHHHhhHHhcCCCEEEEeCCCCCCCCCeEEEeecCCeEEEEEEEEeCCCCccccccCCccCCH
Confidence 76543 21 1334453321 1 257998888899999
Q ss_pred cchhhHHHHHHHHHHhh
Q psy17305 195 IEGTKLLAAYLYEISKV 211 (223)
Q Consensus 195 i~g~~~~a~~~~~l~~l 211 (223)
+. .+++.+..|..+
T Consensus 234 i~---~~~~~l~~l~~~ 247 (464)
T PRK09104 234 IR---VLTRILAGLHDE 247 (464)
T ss_pred HH---HHHHHHHhccCC
Confidence 99 999999988653
No 5
>PRK07907 hypothetical protein; Provisional
Probab=99.97 E-value=1.8e-30 Score=233.47 Aligned_cols=187 Identities=28% Similarity=0.465 Sum_probs=148.0
Q ss_pred HHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCC-cEEEEecCCCCCCCCCCCCCCcEEE
Q psy17305 8 LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGA-TVEICDIGNQTLPNGESIKYPPVIL 86 (223)
Q Consensus 8 ~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~-~~~~~~~~~~~~~~g~~~~~~~nl~ 86 (223)
++++.++++++.++++++|++||+|||+|+......+++++++||.++|+++|+ ++++++.+ + .+|++
T Consensus 6 ~~~~~~~i~~~~~~~~~ll~~LV~ipS~s~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~------~-----~~nl~ 74 (449)
T PRK07907 6 ADDLRARVAELLPRVRADLEELVRIPSVAADPFRREEVARSAEWVADLLREAGFDDVRVVSAD------G-----APAVI 74 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccchhhHHHHHHHHHHHHHHcCCceEEEEecC------C-----CCEEE
Confidence 457889999999999999999999999997532223578999999999999998 77776521 2 26999
Q ss_pred EEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305 87 GNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT 166 (223)
Q Consensus 87 a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~ 166 (223)
+++++.+.+|+|+|+||+||||+++.+.|+++||.+.++||+|||||++|||+|++++|+|+++| +..++++|.+++
T Consensus 75 a~~~~~~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l---~~~~~~~i~~~~ 151 (449)
T PRK07907 75 GTRPAPPGAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL---GGDLPVGVTVFV 151 (449)
T ss_pred EEecCCCCCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh---ccCCCCcEEEEE
Confidence 99854444689999999999999877789999999999999999999999999999999999999 334566665433
Q ss_pred ------cc-----------------ceeeccCccc------------------------CCCCcCCCCccceecccchhh
Q psy17305 167 ------GK-----------------NVLLLPMGAS------------------------DDGAHSQNEKIDVRNYIEGTK 199 (223)
Q Consensus 167 ------g~-----------------~~~~~~~g~~------------------------~~~ahag~~~~~g~~ai~g~~ 199 (223)
|+ .+++++++.. ..++|++..+..+.||+.
T Consensus 152 ~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~~~~~~~~p~i~~~~kG~~~~~l~v~~~G~~~Hss~~~~~~~nAi~--- 228 (449)
T PRK07907 152 EGEEEMGSPSLERLLAEHPDLLAADVIVIADSGNWSVGVPALTTSLRGNADVVVTVRTLEHAVHSGQFGGAAPDALT--- 228 (449)
T ss_pred EcCcccCCccHHHHHHhchHhhcCCEEEEecCCcCCCCCeEEEEecCCcEEEEEEEEECCCCCCCccccccCCCHHH---
Confidence 21 1344444321 236798875566889999
Q ss_pred HHHHHHHHHHhh
Q psy17305 200 LLAAYLYEISKV 211 (223)
Q Consensus 200 ~~a~~~~~l~~l 211 (223)
.+++.+..|..+
T Consensus 229 ~~~~~l~~l~~~ 240 (449)
T PRK07907 229 ALVRLLATLHDE 240 (449)
T ss_pred HHHHHHHhhCCC
Confidence 999999888764
No 6
>PRK08596 acetylornithine deacetylase; Validated
Probab=99.97 E-value=5.1e-30 Score=228.83 Aligned_cols=186 Identities=25% Similarity=0.429 Sum_probs=150.7
Q ss_pred HHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEc
Q psy17305 10 EISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNL 89 (223)
Q Consensus 10 ~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~ 89 (223)
++.++++.+.++++++|++|++|||+|+... ++.++++||+++|+++|+++++++... + .+|+++++
T Consensus 3 ~~~~~i~~~~~~~~~~l~~Lv~i~S~s~~~~---~e~~~a~~l~~~l~~~G~~~~~~~~~~-----~-----~~nvia~~ 69 (421)
T PRK08596 3 QLLEQIELRKDELLELLKTLVRFETPAPPAR---NTNEAQEFIAEFLRKLGFSVDKWDVYP-----N-----DPNVVGVK 69 (421)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCCCCCCCch---hHHHHHHHHHHHHHHCCCeEEEEEccC-----C-----CceEEEEe
Confidence 4677888888999999999999999986432 578899999999999999998877532 2 26999998
Q ss_pred CC-CC-CccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec-
Q psy17305 90 GN-DK-AKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT- 166 (223)
Q Consensus 90 ~~-~~-~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~- 166 (223)
++ ++ ..|+|+|+|||||||+++.+.|+.+||.+.++||+|||||++|||+|++++++|+++|++.+..++.+|.+++
T Consensus 70 ~g~~~~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~ 149 (421)
T PRK08596 70 KGTESDAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPGDLIFQSV 149 (421)
T ss_pred cCCCCCCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcCCCCCCcEEEEEE
Confidence 43 22 2368999999999999877789999999999999999999999999999999999999999888888876543
Q ss_pred -----cc--------------ceeeccCccc------C--------------------CCCcCCCCccceecccchhhHH
Q psy17305 167 -----GK--------------NVLLLPMGAS------D--------------------DGAHSQNEKIDVRNYIEGTKLL 201 (223)
Q Consensus 167 -----g~--------------~~~~~~~g~~------~--------------------~~ahag~~~~~g~~ai~g~~~~ 201 (223)
|+ .+++++++.. . ..+|++ .|..|.||+. .+
T Consensus 150 ~dEE~g~~G~~~~~~~~~~~d~~i~~ep~~~~~~~~~G~~~~~~~v~g~~~~~~~~~~~~~H~~-~p~~G~nai~---~~ 225 (421)
T PRK08596 150 IGEEVGEAGTLQCCERGYDADFAVVVDTSDLHMQGQGGVITGWITVKSPQTFHDGTRRQMIHAG-GGLFGASAIE---KM 225 (421)
T ss_pred eccccCCcCHHHHHhcCCCCCEEEECCCCCCccccccceeeEEEEEEeeccccccccccccccc-CCccCcCHHH---HH
Confidence 21 1445554221 0 025777 5889999999 99
Q ss_pred HHHHHHHHhhh
Q psy17305 202 AAYLYEISKVT 212 (223)
Q Consensus 202 a~~~~~l~~l~ 212 (223)
++.+..|..+.
T Consensus 226 ~~~i~~l~~~~ 236 (421)
T PRK08596 226 MKIIQSLQELE 236 (421)
T ss_pred HHHHHHHHHHH
Confidence 99999988774
No 7
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.97 E-value=7.7e-30 Score=227.75 Aligned_cols=191 Identities=20% Similarity=0.264 Sum_probs=146.7
Q ss_pred HHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEc
Q psy17305 10 EISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNL 89 (223)
Q Consensus 10 ~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~ 89 (223)
++.++++++.++++++|++|++|||.+.... ++.++++||.++|+++|++++.++......... ...+.|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~Lv~i~S~~~~g~---~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~--~~~~~nlia~~ 78 (427)
T PRK13013 4 RLFAAIEARRDDLVALTQDLIRIPTLNPPGR---AYREICEFLAARLAPRGFEVELIRAEGAPGDSE--TYPRWNLVARR 78 (427)
T ss_pred HHHHHHHHhHHHHHHHHHHHhcCCCcCCCCc---cHHHHHHHHHHHHHHCCCceEEEecCCCCcccc--cCCcceEEEEe
Confidence 5777888888999999999999999874322 467899999999999999988775421000000 00025999998
Q ss_pred CCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec---
Q psy17305 90 GNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT--- 166 (223)
Q Consensus 90 ~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~--- 166 (223)
++..+.|+|+|+||+||||++ +.|+.+||.+.++||+|||||++|||+|++++|+|+++|++.+..++++|.+++
T Consensus 79 ~g~~~~~~i~l~gH~DvVp~~--~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~d 156 (427)
T PRK13013 79 QGARDGDCVHFNSHHDVVEVG--HGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGSIEISGTAD 156 (427)
T ss_pred cCCCCCCEEEEEeccccCCCC--CCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhCCCCCccEEEEEEec
Confidence 543345799999999999987 569999999999999999999999999999999999999998877777776543
Q ss_pred ---cc-------------------ceeeccCccc------------------CCCCcCCCCccceecccchhhHHHHHHH
Q psy17305 167 ---GK-------------------NVLLLPMGAS------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLY 206 (223)
Q Consensus 167 ---g~-------------------~~~~~~~g~~------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~ 206 (223)
|+ .+++.++... +.++|++ .|+.|+||+. .+++.+.
T Consensus 157 EE~g~~~g~~~l~~~~~~~~~~~d~~i~~ep~~~~~i~~~~~G~~~~~i~v~G~~~H~~-~p~~g~nai~---~~~~~l~ 232 (427)
T PRK13013 157 EESGGFGGVAYLAEQGRFSPDRVQHVIIPEPLNKDRICLGHRGVWWAEVETRGRIAHGS-MPFLGDSAIR---HMGAVLA 232 (427)
T ss_pred cccCChhHHHHHHhcCCccccCCCEEEEecCCCCCceEEeeeeEEEEEEEEEccccccC-CCCcCcCHHH---HHHHHHH
Confidence 21 0122222110 1388977 7999999999 9999999
Q ss_pred HHHhh
Q psy17305 207 EISKV 211 (223)
Q Consensus 207 ~l~~l 211 (223)
+|..+
T Consensus 233 ~l~~~ 237 (427)
T PRK13013 233 EIEER 237 (427)
T ss_pred HHHHH
Confidence 88654
No 8
>PRK07338 hypothetical protein; Provisional
Probab=99.97 E-value=3.1e-30 Score=228.66 Aligned_cols=195 Identities=21% Similarity=0.276 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCC--CCCCC--CCC
Q psy17305 6 EYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTL--PNGES--IKY 81 (223)
Q Consensus 6 ~~~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~--~~g~~--~~~ 81 (223)
.+..++.++++++.+++++.|++|++|||+|.++. ++.++++||.++|+++|++++.++...... .+++. ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~lv~i~S~s~~~~---~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (402)
T PRK07338 3 SEERAVLDLIDDRQAPMLEQLIAWAAINSGSRNLD---GLARMAELLADAFAALPGEIELIPLPPVEVIDADGRTLEQAH 79 (402)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHhccCCCCCHH---HHHHHHHHHHHHHHhCCCcEEEecCCccccccccccccccCc
Confidence 45667889999999999999999999999987543 578899999999999999988766432100 00110 001
Q ss_pred CcEEEEEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCcee--eeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCc
Q psy17305 82 PPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLT--LKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVP 159 (223)
Q Consensus 82 ~~nl~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~--~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~ 159 (223)
.+||+++++++. .++|+|+|||||||++ .+||.+. ++||+|||||++|||+|++++|+|+++|++.+..++
T Consensus 80 ~~nl~a~~~~~~-~~~lll~gH~DvVp~~------~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~ 152 (402)
T PRK07338 80 GPALHVSVRPEA-PRQVLLTGHMDTVFPA------DHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSPLADK 152 (402)
T ss_pred CCeEEEEECCCC-CccEEEEeecCccCCC------CCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCC
Confidence 269999985432 3579999999999986 3799875 899999999999999999999999999998887766
Q ss_pred eeeEEec------cc---------------ceeeccCccc-------------------CCCCcCCCCccceecccchhh
Q psy17305 160 VNIKEVT------GK---------------NVLLLPMGAS-------------------DDGAHSQNEKIDVRNYIEGTK 199 (223)
Q Consensus 160 ~~i~~~~------g~---------------~~~~~~~g~~-------------------~~~ahag~~~~~g~~ai~g~~ 199 (223)
.++.+++ |+ .+++++++.. ..++|++..|..|+||+.
T Consensus 153 ~~i~~~~~~dEE~g~~g~~~~~~~~~~~~~~~i~~ep~~~~~~v~~~~kG~~~~~v~v~G~~aHs~~~p~~g~nAi~--- 229 (402)
T PRK07338 153 LGYDVLINPDEEIGSPASAPLLAELARGKHAALTYEPALPDGTLAGARKGSGNFTIVVTGRAAHAGRAFDEGRNAIV--- 229 (402)
T ss_pred CCEEEEEECCcccCChhhHHHHHHHhccCcEEEEecCCCCCCcEEeecceeEEEEEEEEeEcccCCCCcccCccHHH---
Confidence 6665432 21 1456665421 138999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q psy17305 200 LLAAYLYEISKVTQ 213 (223)
Q Consensus 200 ~~a~~~~~l~~l~~ 213 (223)
.+++++..|..+.+
T Consensus 230 ~~~~~i~~l~~l~~ 243 (402)
T PRK07338 230 AAAELALALHALNG 243 (402)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999887754
No 9
>KOG2276|consensus
Probab=99.97 E-value=9.1e-30 Score=217.37 Aligned_cols=159 Identities=53% Similarity=0.912 Sum_probs=150.8
Q ss_pred HHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEE
Q psy17305 8 LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILG 87 (223)
Q Consensus 8 ~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a 87 (223)
..++.++++.+.++++..|+++|+|+|+|.++..+....++++|+++.|+++|..++..+.+.+..++|..+|.|+.+.+
T Consensus 4 l~~~fq~id~~~de~~~~L~e~v~iqsvs~dp~~r~~v~rm~~~~~~~l~~lG~~~~l~dlg~q~~~~g~~v~lPpvvl~ 83 (473)
T KOG2276|consen 4 LTKVFQSIDLNKDEFINTLREAVAIQSVSADPTKRLEVRRMADWLRDYLTKLGAPLELVDLGYQSLPDGQIVPLPPVVLG 83 (473)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhcccccccCccccHHHHHHHHHHHHHHHHhCCceeeeecccCCCCCCcccccChhhhh
Confidence 56789999999999999999999999999999888889999999999999999999999998877778888999999999
Q ss_pred EcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305 88 NLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT 166 (223)
Q Consensus 88 ~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~ 166 (223)
++|+++++++++++||||++|+...++|..+||.++++||+|||||+.|+|+.+++++.|++++++.++.+|.||.+++
T Consensus 84 ~~Gsdp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~~lpvnv~f~~ 162 (473)
T KOG2276|consen 84 VLGSDPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLGIDLPVNVVFVF 162 (473)
T ss_pred cccCCCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhCccccceEEEEE
Confidence 9999999999999999999999988999999999999999999999999999999999999999999999999998654
No 10
>PRK06446 hypothetical protein; Provisional
Probab=99.97 E-value=2.8e-29 Score=225.03 Aligned_cols=172 Identities=29% Similarity=0.476 Sum_probs=137.4
Q ss_pred HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEE
Q psy17305 20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL 99 (223)
Q Consensus 20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~il 99 (223)
++++++|++||+|||+|+..+ ++.++++||.++|+++|++++.++.. + .+|++++++.+ .+|+|+
T Consensus 2 ~~~~~~l~eLV~i~S~s~~~~---~~~~~a~~l~~~l~~~G~~ve~~~~~------~-----~~~lia~~~~~-~~~~vl 66 (436)
T PRK06446 2 DEELYTLIEFLKKPSISATGE---GIEETANYLKDTMEKLGIKANIERTK------G-----HPVVYGEINVG-AKKTLL 66 (436)
T ss_pred hhHHHHHHHHhCCCCCCCCcH---hHHHHHHHHHHHHHHCCCeEEEEecC------C-----CCEEEEEecCC-CCCEEE
Confidence 468899999999999997432 44789999999999999999887653 2 26999998643 368999
Q ss_pred EEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec------cc-----
Q psy17305 100 VYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT------GK----- 168 (223)
Q Consensus 100 l~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~------g~----- 168 (223)
|+|||||||+++.+.|+.+||.+.++||+|||||++|||+|++++|+|++.|++.+ .++.++.+++ |+
T Consensus 67 l~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~-~~~~~i~~~~~~dEE~g~~g~~~ 145 (436)
T PRK06446 67 IYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKH-KLNVNVKFLYEGEEEIGSPNLED 145 (436)
T ss_pred EEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcC-CCCCCEEEEEEcccccCCHhHHH
Confidence 99999999998768899999999999999999999999999999999999998765 4566665432 21
Q ss_pred -----------ceeeccCccc-----------------------C--CCCcCCCCccceecccchhhHHHHHHHHHHhh
Q psy17305 169 -----------NVLLLPMGAS-----------------------D--DGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV 211 (223)
Q Consensus 169 -----------~~~~~~~g~~-----------------------~--~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l 211 (223)
+++++|+... . .++|++. |..|.||+. .+++.+.+|..+
T Consensus 146 ~l~~~~~~~~~d~vi~E~~~~~~~~~~~i~~~~kG~~~~~l~v~G~~~~~Hss~-p~~g~NAi~---~~~~~l~~l~~~ 220 (436)
T PRK06446 146 FIEKNKNKLKADSVIMEGAGLDPKGRPQIVLGVKGLLYVELVLRTGTKDLHSSN-APIVRNPAW---DLVKLLSTLVDG 220 (436)
T ss_pred HHHHHHHHhCCCEEEECCCCccCCCCeEEEEecCeEEEEEEEEEeCCCCCCCCC-CccCCCHHH---HHHHHHHhhCCC
Confidence 1223333211 1 3689985 668999999 999999998765
No 11
>PRK13004 peptidase; Reviewed
Probab=99.97 E-value=4.6e-29 Score=221.19 Aligned_cols=182 Identities=19% Similarity=0.260 Sum_probs=149.5
Q ss_pred HHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEE
Q psy17305 8 LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILG 87 (223)
Q Consensus 8 ~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a 87 (223)
.+++.++++++.++++++|++|++|||+|+ ++.+++++|.++|+++|+++...+.. .|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~lv~ips~s~------~e~~~a~~l~~~l~~~G~~~~~~~~~-------------~n~~a 63 (399)
T PRK13004 3 FKLILMLAEKYKADMTRFLRDLIRIPSESG------DEKRVVKRIKEEMEKVGFDKVEIDPM-------------GNVLG 63 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCC------chHHHHHHHHHHHHHcCCcEEEEcCC-------------CeEEE
Confidence 577889999999999999999999999998 46789999999999999985443211 48999
Q ss_pred EcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec-
Q psy17305 88 NLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT- 166 (223)
Q Consensus 88 ~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~- 166 (223)
++++. .|+|+|+||+||||+++.+.|..+||.+.++||+|||||++|||+|++++|.|+++|++.+..++.+|.+++
T Consensus 64 ~~~~~--~~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~ 141 (399)
T PRK13004 64 YIGHG--KKLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEYTLYVTGT 141 (399)
T ss_pred EECCC--CcEEEEEeccCccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCCeEEEEEE
Confidence 88653 389999999999999866789999999999999999999999999999999999999998877777776443
Q ss_pred ------cc---------------ceeeccCccc-----------------CCCCcCCCCccceecccchhhHHHHHHHHH
Q psy17305 167 ------GK---------------NVLLLPMGAS-----------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEI 208 (223)
Q Consensus 167 ------g~---------------~~~~~~~g~~-----------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l 208 (223)
++ .+++.++... +.++|++ .|..|+||+. .+++.+..|
T Consensus 142 ~~EE~~~g~~~~~~~~~~~~~~d~~i~~e~~~~~i~~~~~G~~~~~v~v~G~~~Ha~-~p~~g~nAi~---~~~~~i~~l 217 (399)
T PRK13004 142 VQEEDCDGLCWRYIIEEDKIKPDFVVITEPTDLNIYRGQRGRMEIRVETKGVSCHGS-APERGDNAIY---KMAPILNEL 217 (399)
T ss_pred cccccCcchhHHHHHHhcCCCCCEEEEccCCCCceEEecceEEEEEEEEeccccccC-CCCCCCCHHH---HHHHHHHHH
Confidence 11 0222232211 2388988 6899999999 999999999
Q ss_pred Hhhhhh
Q psy17305 209 SKVTQA 214 (223)
Q Consensus 209 ~~l~~~ 214 (223)
..+.+.
T Consensus 218 ~~~~~~ 223 (399)
T PRK13004 218 EELNPN 223 (399)
T ss_pred Hhhccc
Confidence 887653
No 12
>PRK07473 carboxypeptidase; Provisional
Probab=99.96 E-value=6.1e-29 Score=218.94 Aligned_cols=176 Identities=22% Similarity=0.276 Sum_probs=142.0
Q ss_pred cHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCC-CCCcc
Q psy17305 18 NKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGN-DKAKH 96 (223)
Q Consensus 18 ~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~-~~~~~ 96 (223)
+.++++++|++||+|||+|+++. +..++++|+.++|+++|++++.++... +. .+|+++++++ ++..|
T Consensus 9 ~~~~~~~~l~~Lv~i~S~s~~~~---~~~~~~~~l~~~l~~~G~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~~ 76 (376)
T PRK07473 9 DSEAMLAGLRPWVECESPTWDAA---AVNRMLDLAARDMAIMGATIERIPGRQ-----GF----GDCVRARFPHPRQGEP 76 (376)
T ss_pred CHHHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHHHHcCCeEEEecCCC-----CC----CCeEEEEeCCCCCCCC
Confidence 35789999999999999998643 567889999999999999998765331 11 1589998853 33468
Q ss_pred EEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec------cc--
Q psy17305 97 TVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT------GK-- 168 (223)
Q Consensus 97 ~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~------g~-- 168 (223)
+|+|+|||||||+. +.|..+|| .+++|+|||||++|||+|++++|+|+++|++.+..++.+|.+++ |+
T Consensus 77 ~lll~gH~DtV~~~--~~~~~~p~--~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~~g 152 (376)
T PRK07473 77 GILIAGHMDTVHPV--GTLEKLPW--RREGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPITVLFTPDEEVGTPS 152 (376)
T ss_pred eEEEEecCCCCCCC--CCccCCCe--EEECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCcccCCcc
Confidence 99999999999774 35988999 58899999999999999999999999999998876666665433 22
Q ss_pred -------------ceeeccCccc-------------------CCCCcCCCCccceecccchhhHHHHHHHHHHhhh
Q psy17305 169 -------------NVLLLPMGAS-------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVT 212 (223)
Q Consensus 169 -------------~~~~~~~g~~-------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~ 212 (223)
.+++++++.. +.++|++..|..|+||+. .+++++.+|..+.
T Consensus 153 ~~~~~~~~~~~~d~~iv~ep~~~~~~v~~~~~G~~~~~v~~~G~~aHag~~p~~g~nAi~---~~~~~i~~l~~~~ 225 (376)
T PRK07473 153 TRDLIEAEAARNKYVLVPEPGRPDNGVVTGRYAIARFNLEATGRPSHAGATLSEGRSAIR---EMARQILAIDAMT 225 (376)
T ss_pred HHHHHHHhhccCCEEEEeCCCCCCCCEEEECeeeEEEEEEEEeEcCCCCCCcccCcCHHH---HHHHHHHHHHHhc
Confidence 2566676532 138999999999999999 9999999998875
No 13
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=99.96 E-value=1.1e-28 Score=218.12 Aligned_cols=184 Identities=25% Similarity=0.393 Sum_probs=141.5
Q ss_pred cHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCc-EEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCcc
Q psy17305 18 NKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGAT-VEICDIGNQTLPNGESIKYPPVILGNLGNDKAKH 96 (223)
Q Consensus 18 ~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~-~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~ 96 (223)
..++++++|++|++|||+|+... ..++.++++||.++|+++|++ ++++.........+ ..+|+++.+++..+.+
T Consensus 3 ~~~~~~~~l~~lv~i~s~s~~~~-~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~----~~~nl~~~~~g~~~~~ 77 (400)
T PRK13983 3 LRDEMIELLSELIAIPAVNPDFG-GEGEKEKAEYLESLLKEYGFDEVERYDAPDPRVIEG----VRPNIVAKIPGGDGKR 77 (400)
T ss_pred hHHHHHHHHHHHhCcCCCCCCCC-CccHHHHHHHHHHHHHHcCCceEEEEecCCcccccC----CCccEEEEecCCCCCC
Confidence 34689999999999999986421 114778999999999999998 87765431100000 0269999985443457
Q ss_pred EEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec------cc--
Q psy17305 97 TVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT------GK-- 168 (223)
Q Consensus 97 ~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~------g~-- 168 (223)
+|+|+||+||||+++.+.|+.+||.+.+++|+|||||++|||+|++++|.|+++|++.+..++++|.+++ |+
T Consensus 78 ~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~ 157 (400)
T PRK13983 78 TLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRPKYNLGLAFVSDEETGSKY 157 (400)
T ss_pred eEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCCCCCcEEEEEEeccccCCcc
Confidence 9999999999999877789999999999999999999999999999999999999998888888876443 21
Q ss_pred --c---------------eeeccCccc--------------------CCCCcCCCCccceecccchhhHHHHHHHHHHh
Q psy17305 169 --N---------------VLLLPMGAS--------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISK 210 (223)
Q Consensus 169 --~---------------~~~~~~g~~--------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~ 210 (223)
. +++.+.+.. ..++|++. |..|+||+. .+++.+..|..
T Consensus 158 g~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~-p~~g~nAi~---~~~~~i~~l~~ 232 (400)
T PRK13983 158 GIQYLLKKHPELFKKDDLILVPDAGNPDGSFIEIAEKSILWLKFTVKGKQCHAST-PENGINAHR---AAADFALELDE 232 (400)
T ss_pred cHHHHHhhcccccCCCCEEEEecCCCCCCceeEEeecceEEEEEEEEeEccccCC-CCCCCCHHH---HHHHHHHHHHH
Confidence 0 112111111 13889995 889999999 99999999876
No 14
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=99.96 E-value=1.1e-28 Score=218.34 Aligned_cols=179 Identities=20% Similarity=0.262 Sum_probs=143.1
Q ss_pred HHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEc
Q psy17305 10 EISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNL 89 (223)
Q Consensus 10 ~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~ 89 (223)
++.+++++..+++++++++|++|||+|+ .+.++++||.++|+++|+++.... . ..|+++++
T Consensus 3 ~~~~~i~~~~~~~~~~~~~lv~i~s~s~------~e~~~~~~l~~~l~~~G~~~~~~~-~------------~~n~~~~~ 63 (395)
T TIGR03320 3 QIKSEAKKYRGDMIRFLRDLVAIPSESG------DEKRVAERIKEEMEKLGFDKVEID-P------------MGNVLGYI 63 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCC------chHHHHHHHHHHHHHhCCcEEEEC-C------------CCCEEEEe
Confidence 5677888888999999999999999997 467899999999999999743221 1 14889988
Q ss_pred CCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec---
Q psy17305 90 GNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT--- 166 (223)
Q Consensus 90 ~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~--- 166 (223)
+. +.|+|+|+|||||||+++.+.|+++||.+.++||++||||++|||+|++++|.|+++|++.+..++.++.+++
T Consensus 64 g~--~~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~~i~~~~~~d 141 (395)
T TIGR03320 64 GH--GPKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQ 141 (395)
T ss_pred CC--CCcEEEEEecccccCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcCCCCCceEEEEeccc
Confidence 53 2478999999999999877789999999999999999999999999999999999999998876665554332
Q ss_pred ----cc---------------ceeeccCcc-----------------cCCCCcCCCCccceecccchhhHHHHHHHHHHh
Q psy17305 167 ----GK---------------NVLLLPMGA-----------------SDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISK 210 (223)
Q Consensus 167 ----g~---------------~~~~~~~g~-----------------~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~ 210 (223)
+. .+++.+++. .+.++|++ .|..|.||+. .++..+..|..
T Consensus 142 EE~~~g~~~~~~~~~~~~~~d~~iv~ep~~~~i~~g~~G~~~~~v~~~G~~~Hss-~p~~g~nAi~---~~~~~l~~l~~ 217 (395)
T TIGR03320 142 EEDCDGLCWQYIIEEDGIKPEFVVITEPTDMNIYRGQRGRMEIKVTVKGVSCHGS-APERGDNAIY---KMAPILKELSQ 217 (395)
T ss_pred ccccCchHHHHHHHhcCCCCCEEEEcCCCccceEEecceEEEEEEEEeeeccccC-CCCCCCCHHH---HHHHHHHHHHH
Confidence 11 122233321 02389988 5899999999 99999999887
Q ss_pred hhh
Q psy17305 211 VTQ 213 (223)
Q Consensus 211 l~~ 213 (223)
+.+
T Consensus 218 ~~~ 220 (395)
T TIGR03320 218 LNA 220 (395)
T ss_pred HHH
Confidence 754
No 15
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.96 E-value=1e-28 Score=217.22 Aligned_cols=171 Identities=26% Similarity=0.398 Sum_probs=140.3
Q ss_pred HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEE
Q psy17305 20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL 99 (223)
Q Consensus 20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~il 99 (223)
++++++|++|++|||+|+ .+..+++||.++|+++|++++.++.+. + ++|+++.++++ .|+|+
T Consensus 2 ~~~~~~l~~Lv~i~s~s~------~e~~~~~~l~~~l~~~G~~~~~~~~~~-----~-----~~~l~a~~g~~--~~~il 63 (377)
T PRK08588 2 EEKIQILADIVKINSVND------NEIEVANYLQDLFAKHGIESKIVKVND-----G-----RANLVAEIGSG--SPVLA 63 (377)
T ss_pred hHHHHHHHHHhcCCCCCC------cHHHHHHHHHHHHHHCCCceEEEecCC-----C-----CceEEEEeCCC--CceEE
Confidence 568899999999999997 467899999999999999998876642 2 26999998543 48999
Q ss_pred EEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEeccc-----------
Q psy17305 100 VYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGK----------- 168 (223)
Q Consensus 100 l~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~g~----------- 168 (223)
|+|||||||+++.+.|+++||.+.++||+|||||++|||+|++++|.|+++|.+.+..++++|.+++..
T Consensus 64 ~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~l~~~~dEE~g~~G~~~ 143 (377)
T PRK08588 64 LSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNGTIRLLATAGEEVGELGAKQ 143 (377)
T ss_pred EEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCCCCCcEEEEEEcccccCchhHHH
Confidence 999999999987778999999999999999999999999999999999999999887777787655421
Q ss_pred -----------ceeeccCcc-----------------cCCCCcCCCCccceecccchhhHHHHHHHHHHhhh
Q psy17305 169 -----------NVLLLPMGA-----------------SDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVT 212 (223)
Q Consensus 169 -----------~~~~~~~g~-----------------~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~ 212 (223)
.+++.+++. .+.++|++ .|..|.||+. .+++.+..+..+.
T Consensus 144 ~~~~~~~~~~d~~i~~ep~~~~i~~~~~G~~~~~i~~~G~~~Hss-~p~~g~nAi~---~~~~~l~~l~~~~ 211 (377)
T PRK08588 144 LTEKGYADDLDALIIGEPSGHGIVYAHKGSMDYKVTSTGKAAHSS-MPELGVNAID---PLLEFYNEQKEYF 211 (377)
T ss_pred HHhcCccCCCCEEEEecCCCceeEEEEEEEEEEEEEEEeechhcc-CCccccCHHH---HHHHHHHHHHHHh
Confidence 022223211 02389986 6899999999 8898888887764
No 16
>PRK07205 hypothetical protein; Provisional
Probab=99.96 E-value=7.2e-29 Score=222.79 Aligned_cols=135 Identities=24% Similarity=0.362 Sum_probs=113.3
Q ss_pred hcHHHHHHHHHHhhccCCCCCCCCC----chHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCC
Q psy17305 17 SNKNKFIENLKEAVAIESVSSSVQH----RPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGND 92 (223)
Q Consensus 17 ~~~~~~i~~l~~lv~i~s~s~~~~~----~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~ 92 (223)
++.++++++|++||+|||+|+.... ..+..++++|+.++|+++|++++.++.+ .+++++++.
T Consensus 8 ~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~-------------~~~~~~~g~- 73 (444)
T PRK07205 8 KVQDACVAAIKTLVSYPSVLNEGENGTPFGQAIQDVLEATLDLCQGLGFKTYLDPKG-------------YYGYAEIGQ- 73 (444)
T ss_pred HhHHHHHHHHHHHcccccccCCCcCCCCCchhHHHHHHHHHHHHHhCCCEEEEcCCC-------------eEEEEEecC-
Confidence 4568899999999999999875321 1245788999999999999998776432 366777653
Q ss_pred CCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305 93 KAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT 166 (223)
Q Consensus 93 ~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~ 166 (223)
+.|+|+|+||+||||+++.+.|+++||.+.++||+|||||++|||+|++++|.|+++|++.+.+++++|.+++
T Consensus 74 -~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~~~~~~~~~~i~l~~ 146 (444)
T PRK07205 74 -GEELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALLDAGVQFNKRIRFIF 146 (444)
T ss_pred -CCcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 3579999999999999877889999999999999999999999999999999999999999887777776543
No 17
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=99.96 E-value=2.6e-28 Score=216.16 Aligned_cols=179 Identities=21% Similarity=0.251 Sum_probs=143.0
Q ss_pred HHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEc
Q psy17305 10 EISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNL 89 (223)
Q Consensus 10 ~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~ 89 (223)
++.++++++.+++++++++|++|||+|+ .+.++++||.++|+++|+++...... .|+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~l~~Lv~ips~s~------~e~~~~~~l~~~l~~~g~~~~~~~~~-------------~~v~~~~ 63 (395)
T TIGR03526 3 QIKSEAEKYRGDMIRFLRDLVAIPSESG------DEGRVALRIKQEMEKLGFDKVEIDPM-------------GNVLGYI 63 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCC------chHHHHHHHHHHHHHcCCceEEEcCC-------------CcEEEEe
Confidence 4677888888899999999999999997 46789999999999999974322111 4889988
Q ss_pred CCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec---
Q psy17305 90 GNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT--- 166 (223)
Q Consensus 90 ~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~--- 166 (223)
+. +.++|+|+||+||||+++.+.|+++||.+.++||++||||++|||+|++++|.|++.|++.+..++.++.+++
T Consensus 64 g~--~~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~d 141 (395)
T TIGR03526 64 GH--GPKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQ 141 (395)
T ss_pred CC--CCCEEEEEeeccccCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcCCCCCceEEEEEecc
Confidence 53 2478999999999999877789999999999999999999999999999999999999998866655554332
Q ss_pred ----cc---------------ceeeccCccc-----------------CCCCcCCCCccceecccchhhHHHHHHHHHHh
Q psy17305 167 ----GK---------------NVLLLPMGAS-----------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISK 210 (223)
Q Consensus 167 ----g~---------------~~~~~~~g~~-----------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~ 210 (223)
++ .+++.++... +.++|++ .|..|.||+. .+++.+..|..
T Consensus 142 EE~~~g~~~~~~~~~~~~~~d~~i~~ep~~~~i~~g~~G~~~~~v~v~G~~~Hs~-~p~~g~nAi~---~~~~~i~~l~~ 217 (395)
T TIGR03526 142 EEDCDGLCWQYIIEEDKIKPEFVVITEPTDMNIYRGQRGRMEIKVTVKGVSCHGS-APERGDNAIY---KMAPILKELSQ 217 (395)
T ss_pred cccCCcHhHHHHHhccCCCCCEEEecCCCCceEEEEcceEEEEEEEEecCCCccC-CCCCCCCHHH---HHHHHHHHHHH
Confidence 11 1222333210 2389987 5899999999 99999999888
Q ss_pred hhh
Q psy17305 211 VTQ 213 (223)
Q Consensus 211 l~~ 213 (223)
+.+
T Consensus 218 ~~~ 220 (395)
T TIGR03526 218 LNA 220 (395)
T ss_pred hhh
Confidence 754
No 18
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=99.96 E-value=4.8e-28 Score=215.47 Aligned_cols=185 Identities=24% Similarity=0.328 Sum_probs=150.5
Q ss_pred HHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEE
Q psy17305 8 LAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILG 87 (223)
Q Consensus 8 ~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a 87 (223)
-+++.++++++.++++++|++||+|||+|++.. ++.++++||+++|+++|++++.++.... + .+||++
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~lv~i~S~s~~~~---~~~~~~~~l~~~L~~~G~~v~~~~~~~~----~-----~~~lia 92 (410)
T PRK06133 25 DAELLAAAQQEQPAYLDTLKELVSIESGSGDAE---GLKQVAALLAERLKALGAKVERAPTPPS----A-----GDMVVA 92 (410)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCCCCCCCHH---HHHHHHHHHHHHHHhCCCeEEEEccCCC----C-----CCeEEE
Confidence 466888999999999999999999999987533 5678999999999999999988765321 1 169999
Q ss_pred EcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec-
Q psy17305 88 NLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT- 166 (223)
Q Consensus 88 ~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~- 166 (223)
++++. +.|+|+|+|||||||++ ..|+.+||. +++|++||||++|||+|++++|.|++.|++.+..++++|.+++
T Consensus 93 ~~~g~-~~~~ill~~H~D~Vp~~--~~w~~~Pf~--~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~ 167 (410)
T PRK06133 93 TFKGT-GKRRIMLIAHMDTVYLP--GMLAKQPFR--IDGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLTVLFN 167 (410)
T ss_pred EECCC-CCceEEEEeecCccCCC--CccCCCCEE--EECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEEEEEE
Confidence 98543 35899999999999986 359999994 7899999999999999999999999999998877777776543
Q ss_pred -----cc---------------ceeeccCccc-------------------CCCCcCCCCccceecccchhhHHHHHHHH
Q psy17305 167 -----GK---------------NVLLLPMGAS-------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYE 207 (223)
Q Consensus 167 -----g~---------------~~~~~~~g~~-------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~ 207 (223)
|+ .+++++++.. +.++|++..|..|+||+. .+++.+..
T Consensus 168 ~dEE~g~~G~~~~~~~~~~~~d~~i~~ep~~~~~~v~~~~~G~~~~~v~v~G~~~Hsg~~p~~g~nAi~---~~~~~i~~ 244 (410)
T PRK06133 168 PDEETGSPGSRELIAELAAQHDVVFSCEPGRAKDALTLATSGIATALLEVKGKASHAGAAPELGRNALY---ELAHQLLQ 244 (410)
T ss_pred CCcccCCccHHHHHHHHhccCCEEEEeCCCCCCCCEEEeccceEEEEEEEEeeccccCCCcccCcCHHH---HHHHHHHH
Confidence 21 1344554432 138999999999999999 99999888
Q ss_pred HHhhh
Q psy17305 208 ISKVT 212 (223)
Q Consensus 208 l~~l~ 212 (223)
|..+.
T Consensus 245 l~~~~ 249 (410)
T PRK06133 245 LRDLG 249 (410)
T ss_pred HHhcc
Confidence 87654
No 19
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.96 E-value=3.8e-28 Score=213.25 Aligned_cols=168 Identities=26% Similarity=0.365 Sum_probs=138.0
Q ss_pred HHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEE
Q psy17305 21 KFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLV 100 (223)
Q Consensus 21 ~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill 100 (223)
+++++|++|++|||.|+ .+.+++++|.++|+++|++++....+. .+|++++++. ++|+|+|
T Consensus 3 ~~~~~l~~Lv~ips~s~------~e~~~~~~l~~~l~~~G~~~~~~~~~~-----------~~n~~~~~g~--~~~~i~l 63 (375)
T PRK13009 3 DVLELAQDLIRRPSVTP------DDAGCQDLLAERLEALGFTCERMDFGD-----------VKNLWARRGT--EGPHLCF 63 (375)
T ss_pred hHHHHHHHHhCCCCCCC------chhhHHHHHHHHHHHcCCeEEEeccCC-----------CcEEEEEecC--CCCEEEE
Confidence 57889999999999997 467899999999999999988765432 1699999854 3689999
Q ss_pred EeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec----------ccc-
Q psy17305 101 YGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT----------GKN- 169 (223)
Q Consensus 101 ~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~----------g~~- 169 (223)
+||+||||+++.+.|+++||.+.++||++||||++|||+|++++++|+++|++.+..++++|.+++ |..
T Consensus 64 ~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~~~G~~~ 143 (375)
T PRK13009 64 AGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSIAFLITSDEEGPAINGTVK 143 (375)
T ss_pred EeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceEEEEEEeecccccccCHHH
Confidence 999999999876789999999999999999999999999999999999999998877777776442 110
Q ss_pred --------------eeeccCccc----------------------CCCCcCCCCccceecccchhhHHHHHHHHHHhh
Q psy17305 170 --------------VLLLPMGAS----------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV 211 (223)
Q Consensus 170 --------------~~~~~~g~~----------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l 211 (223)
+++.++... +.++|++ .|..|.||+. .++..+.+|..+
T Consensus 144 ~~~~~~~~~~~~d~~i~~ep~~~~~~~~~i~~g~~g~~~~~i~v~G~~~Ha~-~p~~g~nAi~---~~~~~l~~l~~~ 217 (375)
T PRK13009 144 VLEWLKARGEKIDYCIVGEPTSTERLGDVIKNGRRGSLTGKLTVKGVQGHVA-YPHLADNPIH---LAAPALAELAAT 217 (375)
T ss_pred HHHHHHHcCcCCCEEEEcCCCcccCCCCeEEEecceEEEEEEEEEecCcccC-CCCcccCHHH---HHHHHHHHHHhh
Confidence 223332210 2388997 6999999999 999999998765
No 20
>PRK07318 dipeptidase PepV; Reviewed
Probab=99.96 E-value=5.5e-28 Score=218.34 Aligned_cols=138 Identities=29% Similarity=0.537 Sum_probs=113.2
Q ss_pred HHHHHHHhcHHHHHHHHHHhhccCCCCCCCC------CchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCc
Q psy17305 10 EISEYVESNKNKFIENLKEAVAIESVSSSVQ------HRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPP 83 (223)
Q Consensus 10 ~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~------~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~ 83 (223)
++..+++.+.++++++|++||+|||+|+... +.+++.++++|+.++|+++|++++..+
T Consensus 4 ~~~~~~~~~~~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G~~~~~~~---------------- 67 (466)
T PRK07318 4 DWKKEVEKRKDDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDGFKTKNVD---------------- 67 (466)
T ss_pred hHHHHHHHhHHHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCCCEEEEec----------------
Confidence 3677888888999999999999999987521 122577899999999999999987653
Q ss_pred EEEEEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeE
Q psy17305 84 VILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163 (223)
Q Consensus 84 nl~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~ 163 (223)
|++++...+.+.++|+|+||+||||++ +.|+.+||.+.++||+|||||++|||+|++++++|++.|++.+.+++.+|.
T Consensus 68 n~~~~~~~~~~~~~l~l~gH~DvVp~~--~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~g~~~~~~i~ 145 (466)
T PRK07318 68 NYAGHIEYGEGEEVLGILGHLDVVPAG--DGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKELGLPLSKKVR 145 (466)
T ss_pred CccceEEECCCCCEEEEEEecCCCCCC--CCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHHcCCCCCccEE
Confidence 334333111235789999999999997 369999999999999999999999999999999999999998887776665
Q ss_pred Ee
Q psy17305 164 EV 165 (223)
Q Consensus 164 ~~ 165 (223)
++
T Consensus 146 l~ 147 (466)
T PRK07318 146 FI 147 (466)
T ss_pred EE
Confidence 43
No 21
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=99.96 E-value=1.4e-27 Score=209.60 Aligned_cols=166 Identities=27% Similarity=0.382 Sum_probs=136.1
Q ss_pred HHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEEe
Q psy17305 23 IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYG 102 (223)
Q Consensus 23 i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~~ 102 (223)
+++|++|++|||+|+ ++.++++||.++|+++|++++....+. .+|++++.+. +.|+|+|+|
T Consensus 2 ~~~l~~lv~ips~s~------~e~~~~~~i~~~l~~~G~~~~~~~~~~-----------~~~~~~~~g~--~~~~i~~~~ 62 (370)
T TIGR01246 2 TELAKELISRPSVTP------NDAGCQDIIAERLEKLGFEIEWMHFGD-----------TKNLWATRGT--GEPVLAFAG 62 (370)
T ss_pred hHHHHHHhcCCCCCc------chHHHHHHHHHHHHHCCCEEEEEecCC-----------CceEEEEecC--CCcEEEEEc
Confidence 578999999999997 467899999999999999988876542 1599998754 368999999
Q ss_pred ccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec----------cc----
Q psy17305 103 HLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT----------GK---- 168 (223)
Q Consensus 103 H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~----------g~---- 168 (223)
|+||||+++.+.|+.+||.+.++||++||||++|||+|+++++.|++.|.+.+..++++|.+++ |.
T Consensus 63 H~DtVp~~~~~~W~~~p~~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~~~G~~~~~ 142 (370)
T TIGR01246 63 HTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLLITSDEEGTAIDGTKKVV 142 (370)
T ss_pred cccccCCCCccccccCCCCcEEECCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccccCCCcCHHHHH
Confidence 9999999877889999999999999999999999999999999999999998877777876442 11
Q ss_pred -----------ceeeccCccc----------------------CCCCcCCCCccceecccchhhHHHHHHHHHHhh
Q psy17305 169 -----------NVLLLPMGAS----------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV 211 (223)
Q Consensus 169 -----------~~~~~~~g~~----------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l 211 (223)
.+++.+++.. +.++|++ .|..|.||+. .++..+..|..+
T Consensus 143 ~~~~~~~~~~d~~i~~ep~~~~~~~~~i~~~~~G~~~~~v~v~G~~~H~~-~p~~g~nAi~---~~~~~i~~l~~~ 214 (370)
T TIGR01246 143 ETLMARDELIDYCIVGEPSSVKKLGDVIKNGRRGSITGNLTIKGIQGHVA-YPHLANNPIH---KAAPALAELTAI 214 (370)
T ss_pred HHHHhcCCCCCEEEEcCCCCcccCCceEEEeeeEEEEEEEEEEccCcccC-CcccCCCHHH---HHHHHHHHHhhh
Confidence 1233444321 2388987 5899999999 999998888655
No 22
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=99.96 E-value=1.5e-27 Score=215.42 Aligned_cols=138 Identities=28% Similarity=0.484 Sum_probs=113.6
Q ss_pred HHHHHHhcHHHHHHHHHHhhccCCCCCCCC------CchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcE
Q psy17305 11 ISEYVESNKNKFIENLKEAVAIESVSSSVQ------HRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPV 84 (223)
Q Consensus 11 ~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~------~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~n 84 (223)
+.+++++++++++++|++||+|||.+.... +..++.++++++.++|+++||+++..+.
T Consensus 4 ~~~~i~~~~~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~---------------- 67 (466)
T TIGR01886 4 FKEEVEARKDALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDGFTTKNFDN---------------- 67 (466)
T ss_pred HHHHHHHhHHHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCCeEEEecC----------------
Confidence 466788888999999999999999986421 2346778999999999999999886542
Q ss_pred EEEEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEE
Q psy17305 85 ILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKE 164 (223)
Q Consensus 85 l~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~ 164 (223)
.++....+++.++|+|+|||||||++ +.|+.+||.+.++||+|||||++|||++++++|+|+++|++.++.++++|.+
T Consensus 68 ~~~~~~~~~~~~~l~~~gH~DvVp~~--~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~~~~~~~i~~ 145 (466)
T TIGR01886 68 YAGHVEYGAGDERLGIIGHMDVVPAG--EGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKELGLPPSKKIRF 145 (466)
T ss_pred CceeEEecCCCCEEEEEeecccCCCC--CCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 22222111235799999999999997 4699999999999999999999999999999999999999999888888875
Q ss_pred ec
Q psy17305 165 VT 166 (223)
Q Consensus 165 ~~ 166 (223)
++
T Consensus 146 ~~ 147 (466)
T TIGR01886 146 VV 147 (466)
T ss_pred EE
Confidence 54
No 23
>PRK07079 hypothetical protein; Provisional
Probab=99.95 E-value=3.6e-27 Score=213.14 Aligned_cols=146 Identities=30% Similarity=0.468 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHH----HHHHHhcCCcEEEEecCCCCCCCCCCCCC
Q psy17305 6 EYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYF----ADKLKQLGATVEICDIGNQTLPNGESIKY 81 (223)
Q Consensus 6 ~~~~~~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l----~~~l~~~G~~~~~~~~~~~~~~~g~~~~~ 81 (223)
.+.+++.++++. ++++++|++||+|||+|+.+. ++..+++|+ .++|+++|++++..+.... .+
T Consensus 5 ~~~~~~~~~~~~--~~~~~~L~~LV~ipSvs~~~~---~~~~~~~~l~~~~~~~l~~~G~~~~~~~~~~~---~~----- 71 (469)
T PRK07079 5 AAIARAAAYFDS--GAFFADLARRVAYRTESQNPD---RAPALRAYLTDEIAPALAALGFTCRIVDNPVA---GG----- 71 (469)
T ss_pred HHHHHHHHhhcc--HHHHHHHHHHhccCCCCCCcc---cHHHHHHHHHHHHHHHHHHCCCeEEEEecCCC---CC-----
Confidence 445667777764 579999999999999998644 345566665 5689999999987764310 12
Q ss_pred CcEEEEEcCCCCCccEEEEEeccccCCCCCCCCCC--CCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHc-cCCC
Q psy17305 82 PPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWN--TEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQT-KKNV 158 (223)
Q Consensus 82 ~~nl~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~--~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~-~~~~ 158 (223)
.+||+++++++++.|+|+|+||+||||++ .+.|+ ++||.+.++||+|||||++|||+|++++|+|+++|.+. +..+
T Consensus 72 ~~~vva~~~~~~~~~~lll~gH~DvVp~~-~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~~~~~~ 150 (469)
T PRK07079 72 GPFLIAERIEDDALPTVLIYGHGDVVRGY-DEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLAARGGRL 150 (469)
T ss_pred CCEEEEEeCCCCCCCEEEEEcccCCCCCC-hHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHHhcCCCC
Confidence 27999998544446899999999999986 46799 49999999999999999999999999999999998754 4667
Q ss_pred ceeeEEe
Q psy17305 159 PVNIKEV 165 (223)
Q Consensus 159 ~~~i~~~ 165 (223)
+++|.++
T Consensus 151 ~~~i~~~ 157 (469)
T PRK07079 151 GFNVKLL 157 (469)
T ss_pred CCCEEEE
Confidence 7777643
No 24
>PRK07906 hypothetical protein; Provisional
Probab=99.95 E-value=2.4e-27 Score=211.77 Aligned_cols=133 Identities=25% Similarity=0.404 Sum_probs=112.3
Q ss_pred HHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcC-CCCCccEEEEE
Q psy17305 23 IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLG-NDKAKHTVLVY 101 (223)
Q Consensus 23 i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~-~~~~~~~ill~ 101 (223)
+++|++||+|||+|......+++.++++||.++|+++|++++.++... + ..|++++++ .++..++|+|+
T Consensus 2 ~~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~-----~-----~~nv~~~~~g~~~~~~~lll~ 71 (426)
T PRK07906 2 VDLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGLEPTYLESAP-----G-----RANVVARLPGADPSRPALLVH 71 (426)
T ss_pred hHHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCCCCeEEeecCC-----C-----ceEEEEEEeCCCCCCCcEEEE
Confidence 678999999999985432334788999999999999999998876542 1 169999984 33445799999
Q ss_pred eccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305 102 GHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT 166 (223)
Q Consensus 102 ~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~ 166 (223)
||+||||++. +.|+.+||.+.++||++||||++|||+|++++|+|+++|++.+..++++|.+++
T Consensus 72 ~H~DtVp~~~-~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~~ 135 (426)
T PRK07906 72 GHLDVVPAEA-ADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPRDLVFAF 135 (426)
T ss_pred cccccCCCCc-ccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEE
Confidence 9999999974 579999999999999999999999999999999999999999888887876543
No 25
>PRK09133 hypothetical protein; Provisional
Probab=99.95 E-value=7.9e-27 Score=211.08 Aligned_cols=176 Identities=24% Similarity=0.335 Sum_probs=135.3
Q ss_pred cHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccE
Q psy17305 18 NKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHT 97 (223)
Q Consensus 18 ~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ 97 (223)
+.++++++|++||+|||+|+.. ++.++++||.++|+++|++++..+.... .++ .+|+++++++..+.++
T Consensus 35 ~~~~~~~~l~~Lv~i~S~s~~~----~e~~~~~~l~~~l~~~G~~~~~~~~~~~--~~~-----~~nli~~~~g~~~~~~ 103 (472)
T PRK09133 35 DQQAARDLYKELIEINTTASTG----STTPAAEAMAARLKAAGFADADIEVTGP--YPR-----KGNLVARLRGTDPKKP 103 (472)
T ss_pred hHHHHHHHHHHHhccCCCCCCc----chHHHHHHHHHHHHHcCCCceEEEeccC--CCC-----ceeEEEEecCCCCCCc
Confidence 3578999999999999998542 4788999999999999998754432210 012 2699999854333578
Q ss_pred EEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe-------ccc--
Q psy17305 98 VLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV-------TGK-- 168 (223)
Q Consensus 98 ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~-------~g~-- 168 (223)
|+|+|||||||++. +.|+++||.+.++||+|||||++|||+|++++|+|+++|++.+..++++|.++ .|.
T Consensus 104 lll~~H~DtVp~~~-~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~g~~G 182 (472)
T PRK09133 104 ILLLAHMDVVEAKR-EDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREGFKPKRDIILALTGDEEGTPMNG 182 (472)
T ss_pred EEEEeecccCCCCh-hcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccCccch
Confidence 99999999999974 56999999999999999999999999999999999999999887777777543 221
Q ss_pred ---------------ceeeccCcc----------------------------cCCCCcCCCCccceecccchhhHHHHHH
Q psy17305 169 ---------------NVLLLPMGA----------------------------SDDGAHSQNEKIDVRNYIEGTKLLAAYL 205 (223)
Q Consensus 169 ---------------~~~~~~~g~----------------------------~~~~ahag~~~~~g~~ai~g~~~~a~~~ 205 (223)
.+++ +.+. ...++|++. |. +.||+. .+++.+
T Consensus 183 ~~~l~~~~~~~~~~~~~i~-e~~~~~~~~~gept~~~i~~g~kG~~~~~i~v~G~~~Hss~-p~-~~nAi~---~l~~~l 256 (472)
T PRK09133 183 VAWLAENHRDLIDAEFALN-EGGGGTLDEDGKPVLLTVQAGEKTYADFRLEVTNPGGHSSR-PT-KDNAIY---RLAAAL 256 (472)
T ss_pred HHHHHHHHhhccCeEEEEE-CCCccccCCCCCceEEEeeeecceeEEEEEEEecCCCCCCC-CC-CCChHH---HHHHHH
Confidence 1222 2211 023889985 54 589999 999999
Q ss_pred HHHHhh
Q psy17305 206 YEISKV 211 (223)
Q Consensus 206 ~~l~~l 211 (223)
..|..+
T Consensus 257 ~~l~~~ 262 (472)
T PRK09133 257 SRLAAY 262 (472)
T ss_pred HHHhhC
Confidence 988765
No 26
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=99.95 E-value=5.1e-27 Score=206.36 Aligned_cols=178 Identities=28% Similarity=0.417 Sum_probs=135.5
Q ss_pred HHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEEec
Q psy17305 24 ENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGH 103 (223)
Q Consensus 24 ~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~~H 103 (223)
++|++|++|||.|.... ++.++++||.++|+++|++++..+..... +. ..+++++++.+ ....|+|+|+||
T Consensus 2 ~~l~~lv~i~s~~~~~~---~e~~~a~~l~~~l~~~G~~~~~~~~~~~~---~~--~~~~~~~~~~g-~~~~~~ill~~H 72 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGG---NEETIANYIKDLLREFGFSTDVIEITDDR---LK--VLGKVVVKEPG-NGNEKSLIFNGH 72 (375)
T ss_pred hhHHhhhcCCCCCCCCc---CHHHHHHHHHHHHHHCCCceEEEecCchh---cc--cccceEEeccC-CCCCCEEEEecc
Confidence 57899999999553211 57899999999999999999877653211 00 00013444444 334689999999
Q ss_pred cccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec------cc---------
Q psy17305 104 LDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT------GK--------- 168 (223)
Q Consensus 104 ~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~------g~--------- 168 (223)
|||||+++.++|+++||.+.+++|++||||++|||+|++++|+|+++|++.+..++++|.+++ |+
T Consensus 73 ~DtVp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~G~~~~~~~ 152 (375)
T TIGR01910 73 YDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQSVVDEESGEAGTLYLLQR 152 (375)
T ss_pred cccccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEEcCcccCchhHHHHHHc
Confidence 999999877899999999999999999999999999999999999999998877777776543 21
Q ss_pred -------ceeeccCccc------------------CCCCcCCCCccceecccchhhHHHHHHHHHHhhhhh
Q psy17305 169 -------NVLLLPMGAS------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVTQA 214 (223)
Q Consensus 169 -------~~~~~~~g~~------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~~~ 214 (223)
.+++.+++.. ..++|++. |..|.||+. .+++.+..|..+.+.
T Consensus 153 ~~~~~~d~~i~~~~~~~~~v~~~~~G~~~~~i~~~G~~~Hs~~-p~~g~nAi~---~~~~~l~~l~~~~~~ 219 (375)
T TIGR01910 153 GYFKDADGVLIPEPSGGDNIVIGHKGSIWFKLRVKGKQAHASF-PQFGVNAIM---KLAKLITELNELEEH 219 (375)
T ss_pred CCCCCCCEEEECCCCCCCceEEEecceEEEEEEEeeeecccCC-CCcchhHHH---HHHHHHHHHHHHHHH
Confidence 1233443311 13889885 889999999 999999999887643
No 27
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=99.95 E-value=1.3e-26 Score=205.93 Aligned_cols=182 Identities=32% Similarity=0.451 Sum_probs=144.7
Q ss_pred HHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCC
Q psy17305 15 VESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKA 94 (223)
Q Consensus 15 i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~ 94 (223)
.....+++++.|++|++|||.|. . .+.++++|++++|+++|+.++.+..+... + .+|++++++...+
T Consensus 8 ~~~~~~~~~~~l~~lv~~~s~s~--~---~~~~~~~~l~~~l~~~g~~~~~~~~~~~~---~-----~~n~~~~~~~~~~ 74 (409)
T COG0624 8 SLDLLDDILELLKELVRIPSVSA--G---EEAEAAELLAEWLEELGFEVEEDEVGPGP---G-----RPNLVARLGGGDG 74 (409)
T ss_pred HHHhhHHHHHHHHHHhcCCCCCc--c---cchHHHHHHHHHHHHcCCceEEeecCCCC---C-----ceEEEEEecCCCC
Confidence 33445778899999999999991 1 57899999999999999999988876321 1 1599999976544
Q ss_pred ccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEeccc------
Q psy17305 95 KHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGK------ 168 (223)
Q Consensus 95 ~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~g~------ 168 (223)
.|+|+|+||+||||++....|..+||.+++++|+|||||++|||++++++++|++.+.+.+..++.+|.++++.
T Consensus 75 ~~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~ 154 (409)
T COG0624 75 GPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAAGGELPGDVRLLFTADEESGG 154 (409)
T ss_pred CCeEEEeccccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCeEEEEEEEeccccCC
Confidence 48999999999999997778999999999999999999999999999999999999999888888888765431
Q ss_pred -------------------ceeeccCccc----------------------CCCCcCCCC-ccceec----ccchhhHHH
Q psy17305 169 -------------------NVLLLPMGAS----------------------DDGAHSQNE-KIDVRN----YIEGTKLLA 202 (223)
Q Consensus 169 -------------------~~~~~~~g~~----------------------~~~ahag~~-~~~g~~----ai~g~~~~a 202 (223)
.+++.|+... ...+|++.. |..|.| |+. .++
T Consensus 155 ~~~~~~~~~~~~~~~~~~d~~i~~E~~~~~~~~~~~~~~~kG~~~~~v~v~G~~~Has~~~p~~~~n~i~~a~~---~~~ 231 (409)
T COG0624 155 AGGKAYLEEGEEALGIRPDYEIVGEPTLESEGGDIIVVGHKGSLWLEVTVKGKAGHASTTPPDLGRNPIHAAIE---ALA 231 (409)
T ss_pred cchHHHHHhcchhhccCCCEEEeCCCCCcccCCCeEEEcceeEEEEEEEEEeecccccccCCcccccHHHHHHH---HHH
Confidence 1445555110 126799985 888999 666 666
Q ss_pred HHHHHHHhhh
Q psy17305 203 AYLYEISKVT 212 (223)
Q Consensus 203 ~~~~~l~~l~ 212 (223)
+++..+..+.
T Consensus 232 ~~~~~~~~~~ 241 (409)
T COG0624 232 ELIEELGDLA 241 (409)
T ss_pred HHHHHhcccc
Confidence 6666665443
No 28
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=99.95 E-value=1.1e-26 Score=203.14 Aligned_cols=169 Identities=24% Similarity=0.341 Sum_probs=132.2
Q ss_pred HHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEEec
Q psy17305 24 ENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGH 103 (223)
Q Consensus 24 ~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~~H 103 (223)
++|++||+|||+|++ .+.++++||.++|+++|++++.++..... + .+|+++.+++. +.++|+|+||
T Consensus 1 ~~l~~lv~i~S~s~~-----~~~~~~~~l~~~l~~~G~~~~~~~~~~~~---~-----~~nl~~~~~~~-~~~~i~l~~H 66 (364)
T TIGR01892 1 EILTKLVAFDSTSFR-----PNVDLIDWAQAYLEALGFSVEVQPFPDGA---E-----KSNLVAVIGPS-GAGGLALSGH 66 (364)
T ss_pred ChHHHhhCcCCcCCc-----cHHHHHHHHHHHHHHcCCeEEEEeCCCCC---c-----cccEEEEecCC-CCCeEEEEcc
Confidence 368999999999974 23689999999999999999887754210 1 26999998643 3579999999
Q ss_pred cccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec------cc---------
Q psy17305 104 LDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT------GK--------- 168 (223)
Q Consensus 104 ~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~------g~--------- 168 (223)
+||||.++ +.|+.+||.+.+++|++||||++|||++++++|+|+++|++.+. +.+|.+++ |.
T Consensus 67 ~Dtvp~~~-~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~~~--~~~v~~~~~~~EE~g~~G~~~~~~~ 143 (364)
T TIGR01892 67 TDVVPYDD-AAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAEQL--KKPLHLALTADEEVGCTGAPKMIEA 143 (364)
T ss_pred cccccCCC-CcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhcCc--CCCEEEEEEeccccCCcCHHHHHHh
Confidence 99999975 68999999999999999999999999999999999999988654 44454332 21
Q ss_pred ------ceeeccCcc-----------------cCCCCcCCCCccceecccchhhHHHHHHHHHHhhhh
Q psy17305 169 ------NVLLLPMGA-----------------SDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVTQ 213 (223)
Q Consensus 169 ------~~~~~~~g~-----------------~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~~ 213 (223)
.+++.+++. .+.++|++ .|..|.||+. .+++.+..|..+.+
T Consensus 144 ~~~~~d~~i~~ep~~~~~~~~~~G~~~~~v~v~G~~~Hs~-~p~~g~nAi~---~~~~~i~~l~~~~~ 207 (364)
T TIGR01892 144 GAGRPRHAIIGEPTRLIPVRAHKGYASAEVTVRGRSGHSS-YPDSGVNAIF---RAGRFLQRLVHLAD 207 (364)
T ss_pred cCCCCCEEEECCCCCceeEEeeceEEEEEEEEEccccccc-CCccCcCHHH---HHHHHHHHHHHHHH
Confidence 122223311 12488988 6889999999 99999999987754
No 29
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=99.95 E-value=3.1e-26 Score=203.10 Aligned_cols=173 Identities=19% Similarity=0.316 Sum_probs=134.5
Q ss_pred HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCC-CCCccEE
Q psy17305 20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGN-DKAKHTV 98 (223)
Q Consensus 20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~-~~~~~~i 98 (223)
+++++.|++||+|||+++.. ++.++++||.++|+++|++++..+... |+ +|+++++.+ ++..|+|
T Consensus 9 ~~~~~~l~~lv~ipS~~~~~----~~~~~~~~l~~~l~~~G~~~~~~~~~~-----g~-----~~l~~~~~g~~~~~~~i 74 (400)
T TIGR01880 9 DIAVTRFREYLRINTVQPNP----DYAACVDFLIKQADELGLARKTIEFVP-----GK-----PVVVLTWPGSNPELPSI 74 (400)
T ss_pred HHHHHHHHHHhccCccCCCc----cHHHHHHHHHHHHHhCCCceeEEEecC-----Cc-----eeEEEEEecCCCCCCeE
Confidence 67899999999999998742 367899999999999999987765421 21 699998843 3334899
Q ss_pred EEEeccccCCCCCCCCCCCCCCceee-eCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec------cc---
Q psy17305 99 LVYGHLDVQPAEKEDGWNTEPFVLTL-KDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT------GK--- 168 (223)
Q Consensus 99 ll~~H~DtVp~~~~~~w~~~P~~~~~-~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~------g~--- 168 (223)
+|+|||||||+++ ..|+++||.+.+ +||+|||||++|||++++++++|++.|++.+.+++++|.+++ |+
T Consensus 75 ~l~~H~DvVp~~~-~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~~~~~v~l~~~~dEE~g~~~G 153 (400)
T TIGR01880 75 LLNSHTDVVPVFR-EHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFKFKRTIHISFVPDEEIGGHDG 153 (400)
T ss_pred EEEcccccCCCCc-ccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCCCCceEEEEEeCCcccCcHhH
Confidence 9999999999975 579999999877 699999999999999999999999999998887777776443 21
Q ss_pred --------------ceeeccCccc-----------------------CCCCcCCCCccceecccchhhHHHHHHHHHHhh
Q psy17305 169 --------------NVLLLPMGAS-----------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV 211 (223)
Q Consensus 169 --------------~~~~~~~g~~-----------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l 211 (223)
..++++.|.. ...+|++..+ +.||+. .|+..+..|..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~i~~~~kG~~~~~l~v~G~~~Hs~~~~--~~nai~---~l~~~i~~l~~~ 228 (400)
T TIGR01880 154 MEKFAKTDEFKALNLGFALDEGLASPDDVYRVFYAERVPWWVVVTAPGNPGHGSKLM--ENTAME---KLEKSVESIRRF 228 (400)
T ss_pred HHHHHHhhhccCCceEEEEcCCCcccccccceeEEeeEEEEEEEEEecCCCCCCCCC--CCCHHH---HHHHHHHHHHHh
Confidence 0333322210 1288988633 468888 888888877776
Q ss_pred h
Q psy17305 212 T 212 (223)
Q Consensus 212 ~ 212 (223)
.
T Consensus 229 ~ 229 (400)
T TIGR01880 229 R 229 (400)
T ss_pred h
Confidence 4
No 30
>PRK05111 acetylornithine deacetylase; Provisional
Probab=99.95 E-value=2e-26 Score=202.94 Aligned_cols=176 Identities=27% Similarity=0.381 Sum_probs=136.1
Q ss_pred HHHHHHHHHhhccCCCCCCCC-CchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEE
Q psy17305 20 NKFIENLKEAVAIESVSSSVQ-HRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTV 98 (223)
Q Consensus 20 ~~~i~~l~~lv~i~s~s~~~~-~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~i 98 (223)
++++++|++|++|||+|++.. ..+.+.++++||.++|+++|++++.++.... ++ ..|++++++.. .++|
T Consensus 5 ~~~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~---~~-----~~nvia~~g~~--~~~i 74 (383)
T PRK05111 5 PSFIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQPVPGT---RG-----KFNLLASLGSG--EGGL 74 (383)
T ss_pred hHHHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCeEEEEecCCC---CC-----CceEEEEeCCC--CCeE
Confidence 478999999999999997543 1224578999999999999999888765311 01 26999999543 3589
Q ss_pred EEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec------cc----
Q psy17305 99 LVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT------GK---- 168 (223)
Q Consensus 99 ll~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~------g~---- 168 (223)
+|+|||||||++ .+.|+.+||.+.++||++||||++|||++++++|.|++.|++.+ ++.+|.+++ |+
T Consensus 75 l~~~H~Dvvp~~-~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~i~~~~~~~EE~g~~G~~ 151 (383)
T PRK05111 75 LLAGHTDTVPFD-EGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLTK--LKKPLYILATADEETSMAGAR 151 (383)
T ss_pred EEEeeeceecCC-CCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhcC--CCCCeEEEEEeccccCcccHH
Confidence 999999999986 36799999999999999999999999999999999999998754 455565432 21
Q ss_pred -----------ceeeccCcc-----------------cCCCCcCCCCccceecccchhhHHHHHHHHHHhhh
Q psy17305 169 -----------NVLLLPMGA-----------------SDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVT 212 (223)
Q Consensus 169 -----------~~~~~~~g~-----------------~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~ 212 (223)
.+++.+++. ...++|++ .|..|+||+. .+++.+..|..+.
T Consensus 152 ~~~~~~~~~~d~~i~~ep~~~~~~~~~~G~~~~~i~v~G~~~H~~-~p~~g~nai~---~~~~~i~~l~~~~ 219 (383)
T PRK05111 152 AFAEATAIRPDCAIIGEPTSLKPVRAHKGHMSEAIRITGQSGHSS-DPALGVNAIE---LMHDVIGELLQLR 219 (383)
T ss_pred HHHhcCCCCCCEEEEcCCCCCceeecccceEEEEEEEEeechhcc-CCccCcCHHH---HHHHHHHHHHHHH
Confidence 122223221 02378986 7889999999 8999898887765
No 31
>PRK07522 acetylornithine deacetylase; Provisional
Probab=99.95 E-value=3e-26 Score=201.92 Aligned_cols=172 Identities=23% Similarity=0.371 Sum_probs=133.2
Q ss_pred HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEE
Q psy17305 20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL 99 (223)
Q Consensus 20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~il 99 (223)
.+++++|++||+|||+|++. ..++++||.++|+++|+++++++.... + .+|++++++++ ..|+|+
T Consensus 4 ~~~~~~l~~lv~i~S~s~~~-----~~~~~~~l~~~l~~~G~~~~~~~~~~~----~-----~~nv~a~~~~~-~~~~il 68 (385)
T PRK07522 4 MSSLDILERLVAFDTVSRDS-----NLALIEWVRDYLAAHGVESELIPDPEG----D-----KANLFATIGPA-DRGGIV 68 (385)
T ss_pred hhHHHHHHHHhCCCCcCCCc-----cHHHHHHHHHHHHHcCCeEEEEecCCC----C-----cccEEEEeCCC-CCCeEE
Confidence 46889999999999999742 348999999999999999887654311 1 16999998654 368999
Q ss_pred EEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe------ccc-----
Q psy17305 100 VYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV------TGK----- 168 (223)
Q Consensus 100 l~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~------~g~----- 168 (223)
|+||+||||+++ +.|+.+||.+.++||++||||++|||++++++|.|+++|++.+. +++|.++ .|+
T Consensus 69 l~~H~Dtv~~~~-~~W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~~~--~~~i~~~~~~dEE~g~~G~~~ 145 (385)
T PRK07522 69 LSGHTDVVPVDG-QAWTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAAPL--RRPLHLAFSYDEEVGCLGVPS 145 (385)
T ss_pred EEeecccccCCC-CCCCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhCCC--CCCEEEEEEeccccCCccHHH
Confidence 999999999974 57999999999999999999999999999999999999988754 3444322 221
Q ss_pred -------------ceeeccCcc-----------------cCCCCcCCCCccceecccchhhHHHHHHHHHHhhhh
Q psy17305 169 -------------NVLLLPMGA-----------------SDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVTQ 213 (223)
Q Consensus 169 -------------~~~~~~~g~-----------------~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~~ 213 (223)
.++..++.. .+.++|++. |..|+||+. .+++.+..|..+.+
T Consensus 146 l~~~~~~~~~~~d~~i~~ep~~~~~~~~~~G~~~~~i~v~G~~~Hs~~-p~~g~nAi~---~~~~~i~~l~~~~~ 216 (385)
T PRK07522 146 MIARLPERGVKPAGCIVGEPTSMRPVVGHKGKAAYRCTVRGRAAHSSL-APQGVNAIE---YAARLIAHLRDLAD 216 (385)
T ss_pred HHHHhhhcCCCCCEEEEccCCCCeeeeeecceEEEEEEEEeeccccCC-CccCcCHHH---HHHHHHHHHHHHHH
Confidence 012222210 023889885 568999999 99999999987753
No 32
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.94 E-value=7.2e-26 Score=200.14 Aligned_cols=179 Identities=26% Similarity=0.317 Sum_probs=135.2
Q ss_pred cHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccE
Q psy17305 18 NKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHT 97 (223)
Q Consensus 18 ~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ 97 (223)
..++++++|++||+|||+|+... ++.++++||.++|+++|++++.+..+.... ......++|++++.+.+ .|+
T Consensus 4 ~~~~~~~~l~~lv~i~S~s~~~~---~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~ 76 (394)
T PRK08651 4 MMFDIVEFLKDLIKIPTVNPPGE---NYEEIAEFLRDTLEELGFSTEIIEVPNEYV--KKHDGPRPNLIARRGSG--NPH 76 (394)
T ss_pred hHHHHHHHHHHHhcCCccCCCCc---CHHHHHHHHHHHHHHcCCeEEEEecCcccc--ccccCCcceEEEEeCCC--Cce
Confidence 45789999999999999985333 577899999999999999998887653210 00000025788876543 489
Q ss_pred EEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe------ccc---
Q psy17305 98 VLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV------TGK--- 168 (223)
Q Consensus 98 ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~------~g~--- 168 (223)
|+|+|||||||+++.. |..+||.+.+++|++||||++|||+|++++|+|++.|++.+ +++|.++ .|+
T Consensus 77 ill~~HlDtvp~~~~~-~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~~v~~~~~~~EE~g~~G~ 152 (394)
T PRK08651 77 LHFNGHYDVVPPGEGW-SVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPAG---DGNIELAIVPDEETGGTGT 152 (394)
T ss_pred EEEEeeeeeecCCCCc-cccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhcC---CCCEEEEEecCccccchhH
Confidence 9999999999997432 69999999999999999999999999999999999998876 4455433 221
Q ss_pred ------------ceeeccCccc------------------CCCCcCCCCccceecccchhhHHHHHHHHHHhh
Q psy17305 169 ------------NVLLLPMGAS------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV 211 (223)
Q Consensus 169 ------------~~~~~~~g~~------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l 211 (223)
.+++.++... ..++|++ .|..|.||+. .+++.+..|..+
T Consensus 153 ~~~~~~~~~~~d~~i~~~~~~~~~i~~~~~G~~~~~i~v~G~~~H~~-~p~~g~nAi~---~~~~~i~~l~~~ 221 (394)
T PRK08651 153 GYLVEEGKVTPDYVIVGEPSGLDNICIGHRGLVWGVVKVYGKQAHAS-TPWLGINAFE---AAAKIAERLKSS 221 (394)
T ss_pred HHHHhccCCCCCEEEEecCCCCCceEEecccEEEEEEEEEEeccccC-CCccccCHHH---HHHHHHHHHHHH
Confidence 1233333221 2388988 5889999999 999999988654
No 33
>PRK08262 hypothetical protein; Provisional
Probab=99.93 E-value=2e-25 Score=202.62 Aligned_cols=138 Identities=23% Similarity=0.346 Sum_probs=112.9
Q ss_pred HhcHHHHHHHHHHhhccCCCCCCCCC---chHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEc-CC
Q psy17305 16 ESNKNKFIENLKEAVAIESVSSSVQH---RPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNL-GN 91 (223)
Q Consensus 16 ~~~~~~~i~~l~~lv~i~s~s~~~~~---~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~-~~ 91 (223)
..+.++++++|++||+|||+|+.+.. .....++++||+++|+.+|+.++....+. .|+++.+ ++
T Consensus 40 ~~~~~~~v~~L~~lv~i~S~s~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~~~~~~------------~~vv~~~~g~ 107 (486)
T PRK08262 40 AVDEDAAAERLSEAIRFRTISNRDRAEDDAAAFDALHAHLEESYPAVHAALEREVVGG------------HSLLYTWKGS 107 (486)
T ss_pred cCCHHHHHHHHHHhcccceeccCCCCcccHHHHHHHHHHHHHhChhhhceeEEEEECC------------ccEEEEEECC
Confidence 34568899999999999999986431 23345789999999999999888776642 3566565 54
Q ss_pred CCCccEEEEEeccccCCCCCC--CCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305 92 DKAKHTVLVYGHLDVQPAEKE--DGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165 (223)
Q Consensus 92 ~~~~~~ill~~H~DtVp~~~~--~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~ 165 (223)
++..++|+|+||+||||+++. +.|+++||.+.++||+|||||++|||+|++++|.|++.|++.+..++++|.++
T Consensus 108 ~~~~~~ill~gH~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~~~l~~~I~ll 183 (486)
T PRK08262 108 DPSLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLAQGFQPRRTIYLA 183 (486)
T ss_pred CCCCCeEEEECcccccCCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHHcCCCCCCeEEEE
Confidence 443489999999999998642 56999999999999999999999999999999999999999887777787644
No 34
>PRK08737 acetylornithine deacetylase; Provisional
Probab=99.93 E-value=1.6e-25 Score=196.45 Aligned_cols=169 Identities=20% Similarity=0.282 Sum_probs=125.5
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEE
Q psy17305 19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTV 98 (223)
Q Consensus 19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~i 98 (223)
.++++++|++||+|||.++... .++.++++|++++|+ |++++.++.+. + ..|+++..+ .|+|
T Consensus 5 ~~~~~~~l~~Lv~i~s~~~~~~--~~e~~~~~~l~~~l~--g~~~~~~~~~~-----~-----~~nli~~~g----~~~l 66 (364)
T PRK08737 5 LESTLDHLQALVSFDTRNPPRA--ITTGGIFDYLRAQLP--GFQVEVIDHGA-----G-----AVSLYAVRG----TPKY 66 (364)
T ss_pred HHHHHHHHHHHhCCCCcCCCCC--CCcHHHHHHHHHHhC--CCEEEEecCCC-----C-----ceEEEEEcC----CCeE
Confidence 3578999999999999864221 134789999999997 99988777542 2 269998753 3789
Q ss_pred EEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEeccc----------
Q psy17305 99 LVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGK---------- 168 (223)
Q Consensus 99 ll~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~g~---------- 168 (223)
+|+||+||||++ +.|+.+||.+.++||+|||||++|||+|+++++.|++.+ ...+.+-.+.+|+.|+
T Consensus 67 ll~gH~DtVp~~--~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~~-~~~v~~~~~~dEE~g~~~g~~~~~~~ 143 (364)
T PRK08737 67 LFNVHLDTVPDS--PHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANAG-DGDAAFLFSSDEEANDPRCVAAFLAR 143 (364)
T ss_pred EEEeeeCCCCCC--CCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHcc-CCCEEEEEEcccccCchhhHHHHHHh
Confidence 999999999996 369999999999999999999999999999999998752 1111122222344332
Q ss_pred -----ceeeccCccc-----------------CCCCcCCCCccceecccchhhHHHHHHHHHHhh
Q psy17305 169 -----NVLLLPMGAS-----------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV 211 (223)
Q Consensus 169 -----~~~~~~~g~~-----------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l 211 (223)
.+++.|+... +.++|++..+..|+||+. .+++++.++..+
T Consensus 144 ~~~~~~~iv~Ept~~~~~~~~kG~~~~~v~v~Gk~aHas~p~~~G~NAI~---~~~~~l~~~~~~ 205 (364)
T PRK08737 144 GIPYEAVLVAEPTMSEAVLAHRGISSVLMRFAGRAGHASGKQDPSASALH---QAMRWGGQALDH 205 (364)
T ss_pred CCCCCEEEEcCCCCceeEEecceeEEEEEEEEeeccccCCCcccCCCHHH---HHHHHHHHHHHH
Confidence 1344444321 248999987789999999 999998876543
No 35
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=99.93 E-value=1.5e-25 Score=197.29 Aligned_cols=165 Identities=18% Similarity=0.198 Sum_probs=124.3
Q ss_pred HHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCc-EEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEEec
Q psy17305 25 NLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGAT-VEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGH 103 (223)
Q Consensus 25 ~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~-~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~~H 103 (223)
+|++||+|||+|+ .+.++++||.++|+++|+. ++....+ .||+++++.+ ..++|+|+||
T Consensus 1 ll~~Lv~ipS~s~------~e~~~~~~i~~~l~~~g~~~~~~~~~~-------------~nvva~~~~~-~~~~l~l~gH 60 (373)
T TIGR01900 1 LLQQIMDIFSPSD------HEGPIADEIEAALNNLELEGLEVFRFG-------------DNVLARTDFG-KASRVILAGH 60 (373)
T ss_pred ChHHHhCCCCCCc------hHHHHHHHHHHHHhhccccCceEEEEC-------------CEEEEecCCC-CCCeEEEeCc
Confidence 4789999999997 5778999999999999753 3333322 4999998543 3578999999
Q ss_pred cccCCCCC--CCCCCCCCC--------ceeeeCCeEEecCCCCCchhHHHHHHHHHHHHH--ccCCCceeeEEec-----
Q psy17305 104 LDVQPAEK--EDGWNTEPF--------VLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQ--TKKNVPVNIKEVT----- 166 (223)
Q Consensus 104 ~DtVp~~~--~~~w~~~P~--------~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~--~~~~~~~~i~~~~----- 166 (223)
|||||+++ ...|+.+|| .+.++||+|||||++|||+|++++|+|+++|.+ .+..++++|.+++
T Consensus 61 ~DtVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~~~~~~i~~~~~~dEE 140 (373)
T TIGR01900 61 IDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLDGRAPETELKHDLTLIAYDCEE 140 (373)
T ss_pred cccccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHhhhccccCCCCCEEEEEEeccc
Confidence 99999874 245988765 567899999999999999999999999999964 3445566665332
Q ss_pred -c-c------------------ceeeccCccc-----------------CCCCcCCCCccceecccchhhHHHHHHHHHH
Q psy17305 167 -G-K------------------NVLLLPMGAS-----------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEIS 209 (223)
Q Consensus 167 -g-~------------------~~~~~~~g~~-----------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~ 209 (223)
| + .+++.|+... +.++|++ .|..|.||+. .+++.+.+|.
T Consensus 141 ~~~~~~G~~~~~~~~~~~~~~d~~iv~Ept~~~i~~g~~G~~~~~i~v~G~~~H~s-~p~~g~NAi~---~~~~~i~~l~ 216 (373)
T TIGR01900 141 VAAEKNGLGHIRDAHPDWLAADFAIIGEPTGGGIEAGCNGNIRFDVTAHGVAAHSA-RAWLGDNAIH---KAADIINKLA 216 (373)
T ss_pred ccCCCCCHHHHHHhCcccccCCEEEEECCCCCcccccceeeEEEEEEEEeeccccC-CCCCCCCHHH---HHHHHHHHHH
Confidence 1 0 0233333211 2388988 6889999999 9999999998
Q ss_pred hhhh
Q psy17305 210 KVTQ 213 (223)
Q Consensus 210 ~l~~ 213 (223)
.+.+
T Consensus 217 ~l~~ 220 (373)
T TIGR01900 217 AYEA 220 (373)
T ss_pred Hhhc
Confidence 7754
No 36
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=99.93 E-value=3.1e-25 Score=200.82 Aligned_cols=166 Identities=18% Similarity=0.209 Sum_probs=128.9
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCC--C-CCc
Q psy17305 19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGN--D-KAK 95 (223)
Q Consensus 19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~--~-~~~ 95 (223)
.++++++|++|++|||+|+ .+.++++||.++++++|++++.++.+ |+++++.. + ...
T Consensus 9 ~~~~~~~l~~Lv~ips~S~------~e~~~~~~l~~~~~~~G~~~~~d~~g--------------nvi~~~~~~~g~~~~ 68 (485)
T PRK15026 9 PQPLWDIFAKICSIPHPSY------HEEQLAEYIVGWAKEKGFHVERDQVG--------------NILIRKPATAGMENR 68 (485)
T ss_pred HHHHHHHHHHHhCCCCCCC------CHHHHHHHHHHHHHhCCCEEEEEecC--------------eEEEEEcCCCCCCCC
Confidence 4679999999999999998 46699999999999999999887654 77777532 1 246
Q ss_pred cEEEEEeccccCCCCCC---CCCCCCCCceeeeCCeEEecCC---CCCchhHHHHHHHHHHHHHccCCCceeeEE-----
Q psy17305 96 HTVLVYGHLDVQPAEKE---DGWNTEPFVLTLKDEKLYGRGA---SDDKGPVLGWLHAIEAFQQTKKNVPVNIKE----- 164 (223)
Q Consensus 96 ~~ill~~H~DtVp~~~~---~~w~~~P~~~~~~~~~lyGrG~---~D~K~gv~~~l~al~~l~~~~~~~~~~i~~----- 164 (223)
|+|+|.|||||||++.. ..|..+||.+.++||++||||+ +|||+|++++|+++ ++.+.. +.+|.+
T Consensus 69 ~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l---~~~~~~-~~~i~~l~t~d 144 (485)
T PRK15026 69 KPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVL---ADENVV-HGPLEVLLTMT 144 (485)
T ss_pred CEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHH---HhCCCC-CCCEEEEEEcc
Confidence 89999999999998643 2599999999999999999999 59999999988876 344433 334433
Q ss_pred -eccc--------------ceeeccCccc------------------------------------C-CCCcCCCCcccee
Q psy17305 165 -VTGK--------------NVLLLPMGAS------------------------------------D-DGAHSQNEKIDVR 192 (223)
Q Consensus 165 -~~g~--------------~~~~~~~g~~------------------------------------~-~~ahag~~~~~g~ 192 (223)
+.|. .++++++... + .++|||.++..|+
T Consensus 145 EE~G~~ga~~l~~~~~~~~~~i~~e~~~~g~l~~g~~G~~~~~~~~~~~r~~~~~g~~~~~i~v~Gl~ggHsG~~i~~g~ 224 (485)
T PRK15026 145 EEAGMDGAFGLQSNWLQADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGL 224 (485)
T ss_pred cccCcHhHHHhhhccCCcCEEEEeCCCCCCeEEEeCCCcceEEEEEEEEEEecCCCceEEEEEEECCCCcCChHHHCCCC
Confidence 3332 2444544310 1 3799999999999
Q ss_pred -cccchhhHHHHHHHHHHhh
Q psy17305 193 -NYIEGTKLLAAYLYEISKV 211 (223)
Q Consensus 193 -~ai~g~~~~a~~~~~l~~l 211 (223)
||+. +|++++.++..-
T Consensus 225 ~nAi~---~la~~l~~~~~~ 241 (485)
T PRK15026 225 GNANK---LLVRFLAGHAEE 241 (485)
T ss_pred ccHHH---HHHHHHHHhHhh
Confidence 9999 999999996533
No 37
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=99.92 E-value=1.6e-24 Score=188.92 Aligned_cols=154 Identities=22% Similarity=0.294 Sum_probs=121.9
Q ss_pred HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEE
Q psy17305 20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL 99 (223)
Q Consensus 20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~il 99 (223)
++++++|++|++|||+|+ .+.++++|+.++|+++|++++.+.. .|+++++++ ..|+|+
T Consensus 6 ~~~~~~l~~Lv~i~s~s~------~e~~~~~~l~~~l~~~G~~~~~~~~--------------~n~i~~~~~--~~~~l~ 63 (348)
T PRK04443 6 LEARELLKGLVEIPSPSG------EEAAAAEFLVEFMESHGREAWVDEA--------------GNARGPAGD--GPPLVL 63 (348)
T ss_pred HHHHHHHHHHHcCCCCCC------ChHHHHHHHHHHHHHcCCEEEEcCC--------------CcEEEEcCC--CCCEEE
Confidence 568999999999999997 4679999999999999999876543 388898853 258999
Q ss_pred EEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec------cc-----
Q psy17305 100 VYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT------GK----- 168 (223)
Q Consensus 100 l~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~------g~----- 168 (223)
|+||+||||.. .|| .++||++||||++|||+|++++++|+++| +..++++|.+++ |+
T Consensus 64 ~~~H~DtVp~~-------~p~--~~~~g~iyGrG~~D~Kg~~aa~l~A~~~l---~~~~~~~i~~~~~~dEE~g~~~~~~ 131 (348)
T PRK04443 64 LLGHIDTVPGD-------IPV--RVEDGVLWGRGSVDAKGPLAAFAAAAARL---EALVRARVSFVGAVEEEAPSSGGAR 131 (348)
T ss_pred EEeeccccCCC-------CCc--EeeCCeEEeecccccccHHHHHHHHHHHh---cccCCCCEEEEEEcccccCChhHHH
Confidence 99999999963 366 57899999999999999999999999998 345666665443 21
Q ss_pred ---------ceeeccCccc------------------CCCCcCCCCccceecccchhhHHHHHHHHHHhhhh
Q psy17305 169 ---------NVLLLPMGAS------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVTQ 213 (223)
Q Consensus 169 ---------~~~~~~~g~~------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~~ 213 (223)
.+++.|+... ..++|++. | |.||+. .+++++..|..+.+
T Consensus 132 ~l~~~~~~d~~iv~Ept~~~~i~~~~kG~~~~~l~~~G~~~Hss~-~--g~NAi~---~~~~~l~~l~~~~~ 197 (348)
T PRK04443 132 LVADRERPDAVIIGEPSGWDGITLGYKGRLLVTYVATSESFHSAG-P--EPNAAE---DAIEWWLAVEAWFE 197 (348)
T ss_pred HHHhccCCCEEEEeCCCCccceeeecccEEEEEEEEEeCCCccCC-C--CCCHHH---HHHHHHHHHHHHHh
Confidence 1445554321 13789884 3 899999 99999999887654
No 38
>PRK08554 peptidase; Reviewed
Probab=99.92 E-value=3.5e-24 Score=192.09 Aligned_cols=129 Identities=29% Similarity=0.508 Sum_probs=105.9
Q ss_pred HHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEE
Q psy17305 21 KFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLV 100 (223)
Q Consensus 21 ~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill 100 (223)
+++++|++||+|||.+........+.++++|+.++|+++|++++..+... .+|+++.++. +.++|+|
T Consensus 2 ~~~~~l~~LV~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~-----------~~~l~~~~~~--~~~~l~l 68 (438)
T PRK08554 2 DVLELLSSLVSFETVNDPSKGIKPSKECPKFIKDTLESWGIESELIEKDG-----------YYAVYGEIGE--GKPKLLF 68 (438)
T ss_pred hHHHHHHHHhCCCCCCCcccCcchHHHHHHHHHHHHHHCCCeEEEEecCC-----------ceEEEEEeCC--CCCEEEE
Confidence 47889999999999875332233578899999999999999988776531 1599998753 3478999
Q ss_pred EeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305 101 YGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165 (223)
Q Consensus 101 ~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~ 165 (223)
+||+||||+++ +.|..+||.+.++||++||||++|||+|++++|+|+++|++.+ ++.+|.++
T Consensus 69 ~gH~DtVp~~~-~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~~--~~~~i~l~ 130 (438)
T PRK08554 69 MAHFDVVPVNP-EEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKEP--LNGKVIFA 130 (438)
T ss_pred EeccccCCCCc-cccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhcC--CCCCEEEE
Confidence 99999999974 4699999999999999999999999999999999999998754 44556543
No 39
>PRK06156 hypothetical protein; Provisional
Probab=99.92 E-value=5.3e-24 Score=194.73 Aligned_cols=134 Identities=28% Similarity=0.434 Sum_probs=108.1
Q ss_pred HhcHHHHHHHHHHhhccCCCCCCC---CCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEE-EEcCC
Q psy17305 16 ESNKNKFIENLKEAVAIESVSSSV---QHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVIL-GNLGN 91 (223)
Q Consensus 16 ~~~~~~~i~~l~~lv~i~s~s~~~---~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~-a~~~~ 91 (223)
+++.++++++|++||+|||+|... ...+....+++||.++|+++|++++.. + ++++ +++++
T Consensus 42 ~~~~~~~~~~l~~lv~i~S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G~~~~~~--~-------------~~v~~~~~~g 106 (520)
T PRK06156 42 LKYGAAAIESLRELVAFPTVRVEGVPQHENPEFIGFKKLLKSLARDFGLDYRNV--D-------------NRVLEIGLGG 106 (520)
T ss_pred hhhHHHHHHHHHHhcCcCcccCCCCCccCCccHHHHHHHHHHHHHHCCCeEEec--C-------------CeEEEEEecC
Confidence 456678999999999999998531 111234577899999999999987532 1 3454 66653
Q ss_pred CCCccEEEEEeccccCCCCCCCCCCC-----CCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305 92 DKAKHTVLVYGHLDVQPAEKEDGWNT-----EPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT 166 (223)
Q Consensus 92 ~~~~~~ill~~H~DtVp~~~~~~w~~-----~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~ 166 (223)
. ..|+|+|+|||||||++. +.|.+ +||.+.++||+|||||++|||+|++++++|++.|++.+.+++++|.+++
T Consensus 107 ~-~~~~l~l~gH~DvVp~~~-~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~i~~~~ 184 (520)
T PRK06156 107 S-GSDKVGILTHADVVPANP-ELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMKAIKDSGLPLARRIELLV 184 (520)
T ss_pred C-CCCeEEEEEecCccCCCC-ccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHHHHHHcCCCCCceEEEEE
Confidence 3 357999999999999974 57999 9999999999999999999999999999999999998887777776543
No 40
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.92 E-value=5.7e-24 Score=192.72 Aligned_cols=169 Identities=20% Similarity=0.252 Sum_probs=129.3
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCC---CCc
Q psy17305 19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGND---KAK 95 (223)
Q Consensus 19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~---~~~ 95 (223)
.++++++|++|++|||+|+ .+.++++||.++|+++|+++++++.+ |+++++++. +..
T Consensus 3 ~~~~~~~l~~l~~i~s~s~------~e~~~~~~l~~~l~~~G~~~~~~~~~--------------n~~~~~~~~~g~~~~ 62 (477)
T TIGR01893 3 PSRVFKYFEEISKIPRPSK------NEKEVSNFIVNWAKKLGLEVKQDEVG--------------NVLIRKPATPGYENH 62 (477)
T ss_pred HHHHHHHHHHHHcCCCCCc------cHHHHHHHHHHHHHHcCCeEEEeCCC--------------eEEEEEcCCCCCCCC
Confidence 3678999999999999886 57789999999999999999887643 899987432 245
Q ss_pred cEEEEEeccccCCCCCC---CCCCCCCCceeeeCCeEEecCCC---CCchhHHHHHHHHHHHHHccCCCceeeEE-----
Q psy17305 96 HTVLVYGHLDVQPAEKE---DGWNTEPFVLTLKDEKLYGRGAS---DDKGPVLGWLHAIEAFQQTKKNVPVNIKE----- 164 (223)
Q Consensus 96 ~~ill~~H~DtVp~~~~---~~w~~~P~~~~~~~~~lyGrG~~---D~K~gv~~~l~al~~l~~~~~~~~~~i~~----- 164 (223)
|+|+|+|||||||++.. ..|..+||.+.++||++||||++ |||+|++++|++++. .+. .+.+|.+
T Consensus 63 ~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~---~~~-~~~~i~~~~~~d 138 (477)
T TIGR01893 63 PPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED---NNL-KHPPLELLFTVD 138 (477)
T ss_pred CeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc---CCC-CCCCEEEEEEec
Confidence 88999999999998742 36999999999999999999995 999999999988764 332 2224432
Q ss_pred -eccc---cee-----------ec-----------c------------------Cc-------ccC-CCCcCCCCcccee
Q psy17305 165 -VTGK---NVL-----------LL-----------P------------------MG-------ASD-DGAHSQNEKIDVR 192 (223)
Q Consensus 165 -~~g~---~~~-----------~~-----------~------------------~g-------~~~-~~ahag~~~~~g~ 192 (223)
++|. ..+ .+ + .| +.+ .++|+|..|..|+
T Consensus 139 EE~g~~Gs~~l~~~~~~~~~~~~~d~~~~~~~~~g~~~~~~~~~~~e~~~e~~~kG~~~~~i~~~G~~~~Hsg~~p~~~r 218 (477)
T TIGR01893 139 EETGMDGALGLDENWLSGKILINIDSEEEGEFIVGCAGGRNVDITFPVKYEKFTKNEEGYQISLKGLKGGHSGADIHKGR 218 (477)
T ss_pred cccCchhhhhcChhhcCCcEEEEecCCCCCeEEEECCCCeeEEEEEEEEEEecCCCceEEEEEEeCcCCCcCccccCCCC
Confidence 2221 100 00 0 01 123 6799999999996
Q ss_pred -cccchhhHHHHHHHHHHhhhhh
Q psy17305 193 -NYIEGTKLLAAYLYEISKVTQA 214 (223)
Q Consensus 193 -~ai~g~~~~a~~~~~l~~l~~~ 214 (223)
||+. .+++++.+|..+.++
T Consensus 219 ~nAi~---~aa~~i~~l~~~~~~ 238 (477)
T TIGR01893 219 ANANK---LMARVLNELKENLNF 238 (477)
T ss_pred cCHHH---HHHHHHHhhhhcCCe
Confidence 9999 999999999876543
No 41
>PRK13381 peptidase T; Provisional
Probab=99.91 E-value=6.4e-24 Score=188.56 Aligned_cols=175 Identities=14% Similarity=0.228 Sum_probs=126.0
Q ss_pred HHHHHHHHhhccCCCCCCC----CCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCC-CCCc
Q psy17305 21 KFIENLKEAVAIESVSSSV----QHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGN-DKAK 95 (223)
Q Consensus 21 ~~i~~l~~lv~i~s~s~~~----~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~-~~~~ 95 (223)
+++++|.+|++|||+|.+. +.++++.++++||.++|+++|++....+ + .+||++++++ +++.
T Consensus 2 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~-~------------~~nvi~~~~g~~~~~ 68 (404)
T PRK13381 2 QLTDRFFRYLKVNSQSDAASGTLPSTPGQHELAKLLADELRELGLEDIVID-E------------HAIVTAKLPGNTPGA 68 (404)
T ss_pred cHHHHhHhhEEEeccCCCCCCCCcCChhHHHHHHHHHHHHHHcCCCcEEEc-C------------CeEEEEEEecCCCCC
Confidence 3678999999999999852 1234677999999999999999644332 1 1699999854 3334
Q ss_pred cEEEEEeccccCCCCCCC-------CCCCCCCcee------------------eeCCeEEecCC----CCCchhHHHHHH
Q psy17305 96 HTVLVYGHLDVQPAEKED-------GWNTEPFVLT------------------LKDEKLYGRGA----SDDKGPVLGWLH 146 (223)
Q Consensus 96 ~~ill~~H~DtVp~~~~~-------~w~~~P~~~~------------------~~~~~lyGrG~----~D~K~gv~~~l~ 146 (223)
|+|+|+||+||||++... .|..+||.+. .+++++||||+ +|||+|++++|.
T Consensus 69 ~~lll~~H~D~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GrG~~~~g~DmKgg~aa~l~ 148 (404)
T PRK13381 69 PRIGFIAHLDTVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSDGTSVLGADNKAAIAVVMT 148 (404)
T ss_pred CeEEEEEEecCCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCCCccccccccHHHHHHHHH
Confidence 899999999999986320 1444443322 25778999999 999999999999
Q ss_pred HHHHHHHccCCCceeeEEe------ccc---c-----------eeeccCcc------------------cCCCCcCCCCc
Q psy17305 147 AIEAFQQTKKNVPVNIKEV------TGK---N-----------VLLLPMGA------------------SDDGAHSQNEK 188 (223)
Q Consensus 147 al~~l~~~~~~~~~~i~~~------~g~---~-----------~~~~~~g~------------------~~~~ahag~~~ 188 (223)
|+++|.+.+ .+..+|.++ .|+ . +++++.+. .+.++|++..|
T Consensus 149 a~~~l~~~~-~~~g~i~~~~~~dEE~g~~G~~~~~~~~~~~d~~~~~~~~~~~~i~~~~~G~~~~~v~v~Gk~aHa~~~p 227 (404)
T PRK13381 149 LLENLTENE-VEHGDIVVAFVPDEEIGLRGAKALDLARFPVDFAYTIDCCELGEVVYENFNAASAEITITGVTAHPMSAK 227 (404)
T ss_pred HHHHHHhcC-CCCCCEEEEEEcccccccccHHHHHHhcCCCCEEEEecCCCcceEEEecCcceEEEEEEEeEecCCCCCc
Confidence 999998875 345566433 221 1 22222221 12389988778
Q ss_pred cceecccchhhHHHHHHHHHHhhh
Q psy17305 189 IDVRNYIEGTKLLAAYLYEISKVT 212 (223)
Q Consensus 189 ~~g~~ai~g~~~~a~~~~~l~~l~ 212 (223)
..|.||+. .+++.+.+|..+.
T Consensus 228 ~~g~NAI~---~a~~~i~~l~~~~ 248 (404)
T PRK13381 228 GVLVNPIL---MANDFISHFPRQE 248 (404)
T ss_pred ccCcCHHH---HHHHHHHhCCccC
Confidence 89999999 9999999887764
No 42
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=99.91 E-value=1.4e-23 Score=188.61 Aligned_cols=129 Identities=30% Similarity=0.504 Sum_probs=103.7
Q ss_pred HHHHHHHHHhhccCCCCCCC--C----CchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCC
Q psy17305 20 NKFIENLKEAVAIESVSSSV--Q----HRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDK 93 (223)
Q Consensus 20 ~~~i~~l~~lv~i~s~s~~~--~----~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~ 93 (223)
++++++|++||+|||+|... . ..+++.++++|+.++|+++|++++.... ...++.++.
T Consensus 2 ~~~i~ll~~Lv~ipS~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~--------------~~~~~~~~~-- 65 (447)
T TIGR01887 2 DEILEDLKELIRIDSVEDLEEAKEGAPFGEGPKKALDKFLELAKRDGFTTENVDN--------------YAGYAEYGQ-- 65 (447)
T ss_pred hHHHHHHHHhcCcCcCCCCCCCCCCCCcchhHHHHHHHHHHHHHHcCceEEEecC--------------ceEEEEeCC--
Confidence 46899999999999998431 1 1234678999999999999999874321 112233332
Q ss_pred CccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305 94 AKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT 166 (223)
Q Consensus 94 ~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~ 166 (223)
..|+|+|+||+||||+++ .|.++||.+.+++|+|||||++|||+++++++.|+++|++.+.+++++|.+++
T Consensus 66 ~~~~l~l~gH~D~Vp~~~--~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~~~~~~~~i~~~~ 136 (447)
T TIGR01887 66 GEEYLGILGHLDVVPAGD--GWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKELGLKLKKKIRFIF 136 (447)
T ss_pred CCCeEEEEeecCCCCCCC--CCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 357999999999999974 69999999999999999999999999999999999999999887777776544
No 43
>PRK08652 acetylornithine deacetylase; Provisional
Probab=99.91 E-value=3.3e-23 Score=179.99 Aligned_cols=157 Identities=25% Similarity=0.254 Sum_probs=121.1
Q ss_pred HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEE
Q psy17305 20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL 99 (223)
Q Consensus 20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~il 99 (223)
+++++++++|++|||+|+ ++.++++||.++|+++|++++.+..+.. .|+++ + ++|+|+
T Consensus 2 ~~~~~~~~~lv~ips~s~------~e~~~~~~l~~~l~~~G~~v~~~~~~~~-----------~~~~~--~---~~~~i~ 59 (347)
T PRK08652 2 ERAKELLKQLVKIPSPSG------QEDEIALHIMEFLESLGYDVHIESDGEV-----------INIVV--N---SKAELF 59 (347)
T ss_pred hhHHHHHHHHhcCCCCCC------chHHHHHHHHHHHHHcCCEEEEEecCce-----------eEEEc--C---CCCEEE
Confidence 578899999999999997 4678999999999999999887665421 46666 2 258999
Q ss_pred EEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe------ccc-----
Q psy17305 100 VYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV------TGK----- 168 (223)
Q Consensus 100 l~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~------~g~----- 168 (223)
|+|||||||.. .+| .++||++||||++|||+|++++|.|++.|.+... +.+|.++ .|+
T Consensus 60 l~~H~D~vp~~------~~~---~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~--~~~v~~~~~~dEE~g~~G~~~ 128 (347)
T PRK08652 60 VEVHYDTVPVR------AEF---FVDGVYVYGTGACDAKGGVAAILLALEELGKEFE--DLNVGIAFVSDEEEGGRGSAL 128 (347)
T ss_pred EEccccccCCC------CCC---EEECCEEEeccchhhhHHHHHHHHHHHHHhhccc--CCCEEEEEecCcccCChhHHH
Confidence 99999999975 123 4689999999999999999999999999986543 2344332 221
Q ss_pred --------ceeeccCccc-----------------CCCCcCCCCccceecccchhhHHHHHHHHHHhhhh
Q psy17305 169 --------NVLLLPMGAS-----------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVTQ 213 (223)
Q Consensus 169 --------~~~~~~~g~~-----------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~~ 213 (223)
.+++++++.. +.++|++ .|..|.||+. .+++.+..|..+.+
T Consensus 129 ~~~~~~~d~~i~~ep~~~~i~~~~~g~~~~~i~~~G~~~H~s-~p~~g~nAi~---~~a~~i~~l~~~~~ 194 (347)
T PRK08652 129 FAERYRPKMAIVLEPTDLKVAIAHYGNLEAYVEVKGKPSHGA-CPESGVNAIE---KAFEMLEKLKELLK 194 (347)
T ss_pred HHHhcCCCEEEEecCCCCceeeecccEEEEEEEEEeeecccC-CCCcCcCHHH---HHHHHHHHHHHHHH
Confidence 2445555321 2388955 7889999999 99999999987754
No 44
>PRK05469 peptidase T; Provisional
Probab=99.91 E-value=1.4e-23 Score=186.66 Aligned_cols=176 Identities=18% Similarity=0.210 Sum_probs=129.6
Q ss_pred HHHHHHHHHhhccCCCCCCC----CCchHHHHHHHHHHHHHHhcCCc-EEEEecCCCCCCCCCCCCCCcEEEEEcCCC--
Q psy17305 20 NKFIENLKEAVAIESVSSSV----QHRPQTINMIHYFADKLKQLGAT-VEICDIGNQTLPNGESIKYPPVILGNLGND-- 92 (223)
Q Consensus 20 ~~~i~~l~~lv~i~s~s~~~----~~~~~~~~~~~~l~~~l~~~G~~-~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~-- 92 (223)
+.+++.|++||+|||+|.+. +..+++.++++||+++|+++|++ ++.+.. +||++.+++.
T Consensus 2 ~~~~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~--------------~~v~~~~~g~~~ 67 (408)
T PRK05469 2 DKLLERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQDVTLDEN--------------GYVMATLPANVD 67 (408)
T ss_pred chHHHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEECCC--------------eEEEEEecCCCC
Confidence 46889999999999999773 22246899999999999999996 554332 4899998543
Q ss_pred CCccEEEEEeccccCCCCCC---------------------CCCCCCCCceee----eCCeEEecCC----CCCchhHHH
Q psy17305 93 KAKHTVLVYGHLDVQPAEKE---------------------DGWNTEPFVLTL----KDEKLYGRGA----SDDKGPVLG 143 (223)
Q Consensus 93 ~~~~~ill~~H~DtVp~~~~---------------------~~w~~~P~~~~~----~~~~lyGrG~----~D~K~gv~~ 143 (223)
++.|+|+|+|||||||+... +.|.++||.+.. ..|++||||+ +|||+|+++
T Consensus 68 ~~~~~i~l~~H~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~~~lg~D~Kgglaa 147 (408)
T PRK05469 68 KDVPTIGFIAHMDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGTTLLGADDKAGIAE 147 (408)
T ss_pred CCCCeEEEEEeccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCCEeecccchHHHHH
Confidence 34689999999999987431 224444444332 3478999998 999999999
Q ss_pred HHHHHHHHHHccCCCceeeEEec------c--cc-----------eeeccCccc------------------CCCCcCCC
Q psy17305 144 WLHAIEAFQQTKKNVPVNIKEVT------G--KN-----------VLLLPMGAS------------------DDGAHSQN 186 (223)
Q Consensus 144 ~l~al~~l~~~~~~~~~~i~~~~------g--~~-----------~~~~~~g~~------------------~~~ahag~ 186 (223)
+++|+++|++.+..++++|.+++ | .. .+.+..+.. +.++|++.
T Consensus 148 ~l~a~~~l~~~~~~~~g~v~~~f~~dEE~g~Ga~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~i~v~Gk~~Ha~~ 227 (408)
T PRK05469 148 IMTALEYLIAHPEIKHGDIRVAFTPDEEIGRGADKFDVEKFGADFAYTVDGGPLGELEYENFNAASAKITIHGVNVHPGT 227 (408)
T ss_pred HHHHHHHHHhCCCCCCCCEEEEEecccccCCCHHHhhhhhcCCcEEEEecCCCcceEEeccCceeEEEEEEeeecCCCCC
Confidence 99999999887655666776443 2 11 111211111 23899999
Q ss_pred CccceecccchhhHHHHHHHHHHhhh
Q psy17305 187 EKIDVRNYIEGTKLLAAYLYEISKVT 212 (223)
Q Consensus 187 ~~~~g~~ai~g~~~~a~~~~~l~~l~ 212 (223)
.|..|+||+. .+++++..|..+.
T Consensus 228 ~p~~g~nAi~---~~~~~i~~l~~~~ 250 (408)
T PRK05469 228 AKGKMVNALL---LAADFHAMLPADE 250 (408)
T ss_pred CcccccCHHH---HHHHHHHhCCCCC
Confidence 9999999999 9999998887664
No 45
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.90 E-value=3.8e-23 Score=180.10 Aligned_cols=157 Identities=23% Similarity=0.240 Sum_probs=121.1
Q ss_pred HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhc-CCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEE
Q psy17305 20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQL-GATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTV 98 (223)
Q Consensus 20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~-G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~i 98 (223)
++++++|++|++|||+|+ .+.++++||.++|+++ |+++... + +|++++++.+. .++|
T Consensus 7 ~~~~~~l~~li~ips~s~------~e~~~~~~l~~~l~~~~~~~~~~~--~-------------~~~~~~~~~~~-~~~i 64 (352)
T PRK13007 7 ADLAELTAALVDIPSVSG------DEKALADAVEAALRALPHLEVIRH--G-------------NSVVARTDLGR-PSRV 64 (352)
T ss_pred HHHHHHHHHHhcCCCCCc------hHHHHHHHHHHHHHhCcCceEEec--C-------------CeEEEEccCCC-CCeE
Confidence 679999999999999998 5778999999999996 8876542 2 48999985443 3589
Q ss_pred EEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe------ccc----
Q psy17305 99 LVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV------TGK---- 168 (223)
Q Consensus 99 ll~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~------~g~---- 168 (223)
+|+|||||||+++ ||.+.++||+|||||++|||+|++++|+|++.|.+ +++++.++ .|+
T Consensus 65 ~l~~H~Dtvp~~~-------~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~----~~~~i~~~~~~~EE~~~~~~G 133 (352)
T PRK13007 65 VLAGHLDTVPVAD-------NLPSRREGDRLYGCGASDMKSGLAVMLHLAATLAE----PAHDLTLVFYDCEEVEAEANG 133 (352)
T ss_pred EEEccccccCCCC-------CCCcceeCCEEEccCcccccHHHHHHHHHHHHhhc----cCCCeEEEEEecccccCCccc
Confidence 9999999999862 45567889999999999999999999999999943 34444422 211
Q ss_pred ---------------ceeeccCcc-----------------cCCCCcCCCCccceecccchhhHHHHHHHHHHhhhh
Q psy17305 169 ---------------NVLLLPMGA-----------------SDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVTQ 213 (223)
Q Consensus 169 ---------------~~~~~~~g~-----------------~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~~ 213 (223)
.++++++.. .+..+|++ .|..|.||+. .+++.+..|..+..
T Consensus 134 ~~~~~~~~~~~~~~d~~i~~ep~~~~i~~~~~G~~~~~i~v~G~~~Hs~-~p~~g~nAi~---~~~~~i~~l~~~~~ 206 (352)
T PRK13007 134 LGRLAREHPEWLAGDFAILLEPTDGVIEAGCQGTLRVTVTFHGRRAHSA-RSWLGENAIH---KAAPVLARLAAYEP 206 (352)
T ss_pred HHHHHHhcccccCCCEEEEecCCCCceEeeccceEEEEEEEEecccccC-CCccCcCHHH---HHHHHHHHHHHhcc
Confidence 123333321 02388988 6788999999 99999999887654
No 46
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=99.90 E-value=3.9e-23 Score=180.72 Aligned_cols=167 Identities=17% Similarity=0.231 Sum_probs=129.1
Q ss_pred HHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEE
Q psy17305 21 KFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLV 100 (223)
Q Consensus 21 ~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill 100 (223)
++++.|++|++|||+|+ .+.++++||.++|+.+|++++.+...... .+ ..|+++.+++..+.|+|+|
T Consensus 1 ~~~~~~~~l~~i~s~s~------~e~~~~~~l~~~l~~~g~~~~~~~~~~~~--~~-----~~~~~~~~~g~~~~~~i~l 67 (361)
T TIGR01883 1 RLKKYFLELIQIDSESG------KEKAILTYLKKQITKLGIPVSLDEVPAEV--SN-----DNNLIARLPGTVKFDTIFF 67 (361)
T ss_pred ChHHHHHHHeecCCCCC------cHHHHHHHHHHHHHHcCCEEEEecccccc--CC-----CceEEEEEeCCCCCCcEEE
Confidence 36789999999999997 57799999999999999998877643210 01 1699999854334589999
Q ss_pred EeccccCCCCCCCCCCCCCCceeeeCCeEEecCC----CCCchhHHHHHHHHHHHHHccCCCceeeEEec------cc--
Q psy17305 101 YGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGA----SDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT------GK-- 168 (223)
Q Consensus 101 ~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~----~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~------g~-- 168 (223)
.||+||||+++ ||.+.++++++||||+ .|||+|++++|.+++.|++.+ .++++|.+++ |.
T Consensus 68 ~~H~D~V~~~~-------~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~-~~~~~v~~~~~~~EE~g~~G 139 (361)
T TIGR01883 68 CGHMDTVPPGA-------GPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE-TPHGTIEFIFTVKEELGLIG 139 (361)
T ss_pred EeeccccCCCC-------CCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccCchh
Confidence 99999999852 4556788999999999 999999999999999998876 4566776443 21
Q ss_pred ------------ceeeccCccc-------------------CCCCcCCCCccceecccchhhHHHHHHHHHHhh
Q psy17305 169 ------------NVLLLPMGAS-------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV 211 (223)
Q Consensus 169 ------------~~~~~~~g~~-------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l 211 (223)
.+++++++.. +.++|++..|..|+||+. .+++.+..|..+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~i~~~G~~~Ha~~~p~~g~nAi~---~~~~~i~~l~~~ 210 (361)
T TIGR01883 140 MRLFDESKITAAYGYCLDAPGEVGNIQLAAPTQVKVDATIAGKDAHAGLVPEDGISAIS---VARMAIHAMRLG 210 (361)
T ss_pred HhHhChhhcCcceeEEEeCCCCcceEEecCCceEEEEEEEEeeecCCCCCcccCcCHHH---HHHHHHHhcccc
Confidence 1233443211 238999999999999999 999999888653
No 47
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=99.90 E-value=1.4e-22 Score=176.52 Aligned_cols=153 Identities=23% Similarity=0.289 Sum_probs=114.3
Q ss_pred HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEE
Q psy17305 20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL 99 (223)
Q Consensus 20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~il 99 (223)
++++++|++||+|||+|+ ++.++++||.++|+++|+++++++.+ |++. .+ .++|+
T Consensus 10 ~~~~~~l~~lv~i~s~s~------~e~~~~~~l~~~l~~~g~~~~~~~~~--------------~~~~-~g----~~~ll 64 (346)
T PRK00466 10 QKAKELLLDLLSIYTPSG------NETNATKFFEKISNELNLKLEILPDS--------------NSFI-LG----EGDIL 64 (346)
T ss_pred HHHHHHHHHHhcCCCCCC------CHHHHHHHHHHHHHHcCCeEEEecCC--------------CcEe-cC----CCeEE
Confidence 578999999999999886 46789999999999999998877643 4443 22 36799
Q ss_pred EEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCc--eeeEEeccc---------
Q psy17305 100 VYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVP--VNIKEVTGK--------- 168 (223)
Q Consensus 100 l~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~--~~i~~~~g~--------- 168 (223)
|+||+||||+. |.+.++||+|||||++|||+|++++|+|+++|++.+.++- .+..|+.|+
T Consensus 65 l~gH~DtVp~~---------~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~~~i~~~~~~dEE~g~~G~~~l~~~ 135 (346)
T PRK00466 65 LASHVDTVPGY---------IEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEKGIKVMVSGLADEESTSIGAKELVSK 135 (346)
T ss_pred EEeccccCCCC---------CCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCEEEEEEcCcccCCccHHHHHhc
Confidence 99999999852 5567899999999999999999999999999998874321 111233332
Q ss_pred -----ceeeccCccc------------------CCCCcCCCCccceecccchhhHHHHHHHHHHhhh
Q psy17305 169 -----NVLLLPMGAS------------------DDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVT 212 (223)
Q Consensus 169 -----~~~~~~~g~~------------------~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~ 212 (223)
.+++.++... +.++|++.. . .||+. .++..+..|..+.
T Consensus 136 ~~~~d~~i~~ep~~~~~i~~~~kG~~~~~i~v~G~~~Has~p-~--~nAi~---~~~~~l~~l~~~~ 196 (346)
T PRK00466 136 GFNFKHIIVGEPSNGTDIVVEYRGSIQLDIMCEGTPEHSSSA-K--SNLIV---DISKKIIEVYKQP 196 (346)
T ss_pred CCCCCEEEEcCCCCCCceEEEeeEEEEEEEEEEeeccccCCC-C--cCHHH---HHHHHHHHHHhcc
Confidence 1334444311 238898864 3 48999 8899888876653
No 48
>KOG2275|consensus
Probab=99.89 E-value=6.3e-22 Score=170.56 Aligned_cols=134 Identities=24% Similarity=0.344 Sum_probs=114.2
Q ss_pred HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEE
Q psy17305 20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL 99 (223)
Q Consensus 20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~il 99 (223)
...+..++++++|||..++++++. .+++++..+.+.+|..++..+... ++ +.+++.+.|+++..++||
T Consensus 25 ~~~v~~f~eylRi~Tv~p~~dy~~---a~~~Fl~~~a~~l~l~~~~i~~~p-----~~----~~~l~T~~GS~P~L~sil 92 (420)
T KOG2275|consen 25 NISVTRFREYLRIPTVQPNPDYTI---ACADFLKKYAKSLGLTVQKIESEP-----GK----YVLLYTWLGSDPELPSIL 92 (420)
T ss_pred chHHHHHHHHhhccccccCCCccH---HHHHHHHHHHHhcCCceeEEEecC-----ce----eEEEEEeeCCCCCcccee
Confidence 568899999999999988877432 889999999999999887766543 21 235555558888899999
Q ss_pred EEeccccCCCCCCCCCCCCCCceee-eCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305 100 VYGHLDVQPAEKEDGWNTEPFVLTL-KDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT 166 (223)
Q Consensus 100 l~~H~DtVp~~~~~~w~~~P~~~~~-~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~ 166 (223)
|++|+||||+- .+.|+++||+... ++|.|||||++|||+-+++.|+|++.|+..|.++.++|.+.+
T Consensus 93 L~SH~DVVP~f-~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp~Rti~lsf 159 (420)
T KOG2275|consen 93 LNSHTDVVPVF-REKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKPKRTIHLSF 159 (420)
T ss_pred eeccccccCCC-cccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCcCceEEEEe
Confidence 99999999997 4689999999886 789999999999999999999999999999999999986443
No 49
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=99.88 E-value=6.7e-22 Score=173.30 Aligned_cols=161 Identities=16% Similarity=0.191 Sum_probs=123.0
Q ss_pred HHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEEe
Q psy17305 23 IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYG 102 (223)
Q Consensus 23 i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~~ 102 (223)
++++++|++|||+|+ ++.++++||.++|+++|+++++.... ..|+++++++..+.|+|+|+|
T Consensus 2 ~~~~~~L~~ips~s~------~E~~~a~~l~~~l~~~g~~~~~~~~~------------~~~vva~~~~~~~~~~i~l~g 63 (363)
T TIGR01891 2 TDIRRHLHEHPELSF------EEFKTSSLIAEALESLGIEVRRGVGG------------ATGVVATIGGGKPGPVVALRA 63 (363)
T ss_pred hHHHHHHhcCCCCCC------chHHHHHHHHHHHHHcCCceEecCCC------------CcEEEEEEeCCCCCCEEEEEe
Confidence 578999999999998 57899999999999999998763211 159999986543458999999
Q ss_pred ccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec------c--c------
Q psy17305 103 HLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT------G--K------ 168 (223)
Q Consensus 103 H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~------g--~------ 168 (223)
||||||+++ |..+||.+. ++|++||||+ ++++++++.|+..|++.+..++.+|.+++ + .
T Consensus 64 H~DtVp~~~---~~~~pf~~~-~~g~l~g~G~---~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~G~~~~~~~ 136 (363)
T TIGR01891 64 DMDALPIQE---QTDLPYKST-NPGVMHACGH---DLHTAILLGTAKLLKKLADLLEGTVRLIFQPAEEGGGGATKMIED 136 (363)
T ss_pred ccCCCCccc---ccCCCcccC-CCCceecCcC---HHHHHHHHHHHHHHHhchhhCCceEEEEEeecCcCcchHHHHHHC
Confidence 999999863 667999875 7899999997 47888999999888886655555665332 1 1
Q ss_pred -------ceeeccC-------------c------------ccCCCCcCCCCccceecccchhhHHHHHHHHHHhhh
Q psy17305 169 -------NVLLLPM-------------G------------ASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVT 212 (223)
Q Consensus 169 -------~~~~~~~-------------g------------~~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~ 212 (223)
.++++++ + +.+.++|+ ..|..|+||+. .+++++.++..+.
T Consensus 137 ~~~~~~d~~i~~e~~~~~~~~~~~~~~~~~~~g~~~~~i~~~G~~~Ha-s~p~~g~nAi~---~~~~~i~~l~~~~ 208 (363)
T TIGR01891 137 GVLDDVDAILGLHPDPSIPAGTVGLRPGTIMAAADKFEVTIHGKGAHA-ARPHLGRDALD---AAAQLVVALQQIV 208 (363)
T ss_pred CCCCCcCEEEEECCCCCCCCeEEEECCCcceeecceEEEEEEeecccc-cCcccccCHHH---HHHHHHHHHHHHh
Confidence 1222222 0 01348899 78899999999 9999999988763
No 50
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=99.87 E-value=1.9e-21 Score=173.22 Aligned_cols=171 Identities=14% Similarity=0.183 Sum_probs=124.4
Q ss_pred HHHHHHHHHhhccCCCCCCCC----CchHHHHHHHHHHHHHHhcCCc-EEEEe-cCCCCCCCCCCCCCCcEEEEEcCCCC
Q psy17305 20 NKFIENLKEAVAIESVSSSVQ----HRPQTINMIHYFADKLKQLGAT-VEICD-IGNQTLPNGESIKYPPVILGNLGNDK 93 (223)
Q Consensus 20 ~~~i~~l~~lv~i~s~s~~~~----~~~~~~~~~~~l~~~l~~~G~~-~~~~~-~~~~~~~~g~~~~~~~nl~a~~~~~~ 93 (223)
+++++.|.+|++|+|+|+... .++++.+++++|+++|+++|++ ++.++ . .||++++++..
T Consensus 3 ~~~~~~f~~~~~i~s~s~~~~~~~ps~~~~~~~a~~l~~~l~~lG~~~v~~d~~~--------------gnv~~~~~~~~ 68 (410)
T TIGR01882 3 EELLPRFLTYVKVNTRSDENSDTCPSTPGQLTFGNMLVDDLKSLGLQDAHYDEKN--------------GYVIATIPSNT 68 (410)
T ss_pred hHHHHHHHhhEEEecccCCCCCCCCCCHhHHHHHHHHHHHHHHcCCceEEEcCCc--------------eEEEEEecCCC
Confidence 578999999999999997322 2333447999999999999997 88775 3 39999975433
Q ss_pred C--ccEEEEEeccccCCC-CCC------------------------CCCCCCCCce------e-eeCCeEEecCCCCCch
Q psy17305 94 A--KHTVLVYGHLDVQPA-EKE------------------------DGWNTEPFVL------T-LKDEKLYGRGASDDKG 139 (223)
Q Consensus 94 ~--~~~ill~~H~DtVp~-~~~------------------------~~w~~~P~~~------~-~~~~~lyGrG~~D~K~ 139 (223)
+ .|+|+|.+||||||. +.. ..|.++||.. . .+|+.+|| +|||+
T Consensus 69 ~~~~~~i~~~aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~g~~l~G---~D~Kg 145 (410)
T TIGR01882 69 DKDVPTIGFLAHVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITTDGTTLLG---ADDKA 145 (410)
T ss_pred CCCCCEEEEEEecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEEcCCCEeec---ccCHH
Confidence 3 389999999999984 321 1588888873 3 67789999 99999
Q ss_pred hHHHHHHHHHHHHHccCCCceeeEEec------cc--c-----------eeeccC---cc---------------cCCCC
Q psy17305 140 PVLGWLHAIEAFQQTKKNVPVNIKEVT------GK--N-----------VLLLPM---GA---------------SDDGA 182 (223)
Q Consensus 140 gv~~~l~al~~l~~~~~~~~~~i~~~~------g~--~-----------~~~~~~---g~---------------~~~~a 182 (223)
|+|++|.|++.|++.+..++++|.+++ |. . .+++.. |. .+.++
T Consensus 146 glAa~l~A~~~L~e~~~~~~g~I~~~ft~dEE~g~Ga~~l~~~~~~~~~~~~i~gep~g~i~~~~~g~~~~~I~v~Gk~a 225 (410)
T TIGR01882 146 GIAEIMTAADYLINHPEIKHGTIRVAFTPDEEIGRGAHKFDVKDFNADFAYTVDGGPLGELEYETFSAAAAKITIQGNNV 225 (410)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEEECcccCCcCcchhhhhhcCccEEEEeCCCCCCeEEEccccceEEEEEEEEEec
Confidence 999999999999986333455665443 21 1 111111 10 01389
Q ss_pred cCCCCccceecccchhhHHHHHHHHHHh
Q psy17305 183 HSQNEKIDVRNYIEGTKLLAAYLYEISK 210 (223)
Q Consensus 183 hag~~~~~g~~ai~g~~~~a~~~~~l~~ 210 (223)
|++..+..|+||+. .+..++..+..
T Consensus 226 Ha~~~~~~g~nAi~---~a~~~~~~l~~ 250 (410)
T TIGR01882 226 HPGTAKGKMINAAQ---IAIDLHNLLPE 250 (410)
T ss_pred CcccChHHHHHHHH---HHHHHHHhcCC
Confidence 99988889999999 77777666544
No 51
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=99.86 E-value=7.7e-21 Score=164.92 Aligned_cols=101 Identities=28% Similarity=0.437 Sum_probs=84.7
Q ss_pred HHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEEecc
Q psy17305 25 NLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHL 104 (223)
Q Consensus 25 ~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~~H~ 104 (223)
+|++|++|||+|+ .+.++++||+++|+++|+++..... .|+++..++ +.|+|+|+|||
T Consensus 2 ~l~~lv~i~s~s~------~e~~~~~~l~~~l~~~g~~~~~~~~--------------~~~~~~~~~--~~~~i~~~~H~ 59 (336)
T TIGR01902 2 LLKDLLEIYSPSG------KEANAAKFLEEISKDLGLKLIIDDA--------------GNFILGKGD--GHKKILLAGHV 59 (336)
T ss_pred hHHHHhcCCCCCc------chHHHHHHHHHHHHHcCCEEEECCC--------------CcEEEEeCC--CCceEEEEccc
Confidence 6899999999997 4679999999999999998843221 377776643 36899999999
Q ss_pred ccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccC
Q psy17305 105 DVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKK 156 (223)
Q Consensus 105 DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~ 156 (223)
||||+. |.+.++||++||||++|||+|++++|+|+++|++.+.
T Consensus 60 D~vp~~---------~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~~~ 102 (336)
T TIGR01902 60 DTVPGY---------IPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNEKGI 102 (336)
T ss_pred cccCCC---------cccEEeCCEEEEecccCCCcHHHHHHHHHHHHHhCCC
Confidence 999852 4457899999999999999999999999999987654
No 52
>PLN02693 IAA-amino acid hydrolase
Probab=99.85 E-value=7.2e-20 Score=164.17 Aligned_cols=173 Identities=13% Similarity=0.216 Sum_probs=132.2
Q ss_pred HHHHHHHHh--cHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEE
Q psy17305 9 AEISEYVES--NKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVIL 86 (223)
Q Consensus 9 ~~~~~~i~~--~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~ 86 (223)
.++++.+++ ..++++++.++|.++|+.|+ ++.+.+++|.++|+++|++++. ..+ ..|++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~r~~lh~~PE~s~------~E~~ta~~i~~~L~~~G~~~~~-~~~------------~~~vi 94 (437)
T PLN02693 34 INLLELAKSPEVFDWMVRIRRKIHENPELGY------EEFETSKLIRSELDLIGIKYRY-PVA------------ITGII 94 (437)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhCCCCCC------chHHHHHHHHHHHHHCCCeeEe-cCC------------CcEEE
Confidence 344444443 44678999999999999999 6889999999999999999764 222 16999
Q ss_pred EEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305 87 GNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT 166 (223)
Q Consensus 87 a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~ 166 (223)
+.++++ ++|+|+|.|||||||.++...|.++|| .+|++||+| +|+++++++.|+++|++.+..++++|.+++
T Consensus 95 a~~g~~-~g~~i~l~~h~DaVp~~e~~~~~~~p~----~~G~~hacG---hkg~~A~~l~Aa~~L~~~~~~~~g~V~~if 166 (437)
T PLN02693 95 GYIGTG-EPPFVALRADMDALPIQEAVEWEHKSK----IPGKMHACG---HDGHVAMLLGAAKILQEHRHHLQGTVVLIF 166 (437)
T ss_pred EEECCC-CCCEEEEEeecCCCcCCCCCCCCCCCC----CCCCEECCc---chHHHHHHHHHHHHHHhCcccCCceEEEEE
Confidence 998543 358999999999999976667999998 368999765 699999999999999988766677776443
Q ss_pred --------cc------------ceeec---cC----c------------c-------cCCCCcCCCCccceecccchhhH
Q psy17305 167 --------GK------------NVLLL---PM----G------------A-------SDDGAHSQNEKIDVRNYIEGTKL 200 (223)
Q Consensus 167 --------g~------------~~~~~---~~----g------------~-------~~~~ahag~~~~~g~~ai~g~~~ 200 (223)
|. ++++. ++ | . .+.++|++ .|..|+||+. +
T Consensus 167 ~pdEE~~~Ga~~~i~~g~~~~~~~iig~h~~p~~~~g~~~~~~g~~~~G~~~~~i~v~Gk~aHaa-~P~~G~nAI~---~ 242 (437)
T PLN02693 167 QPAEEGLSGAKKMREEGALKNVEAIFGIHLSPRTPFGKAASRAGSFMAGAGVFEAVITGKGGHAA-IPQHTIDPVV---A 242 (437)
T ss_pred EEcccchhhHHHHHHCCCCCCCCEEEEEecCCCCCCeeEEeccCcccccceEEEEEEEcccccCC-CCCCCcCHHH---H
Confidence 11 12221 11 1 0 12488988 5999999999 9
Q ss_pred HHHHHHHHHhhh
Q psy17305 201 LAAYLYEISKVT 212 (223)
Q Consensus 201 ~a~~~~~l~~l~ 212 (223)
+++.+.+|+.+.
T Consensus 243 aa~~i~~l~~~~ 254 (437)
T PLN02693 243 ASSIVLSLQQLV 254 (437)
T ss_pred HHHHHHHHHHHh
Confidence 999999998874
No 53
>PLN02280 IAA-amino acid hydrolase
Probab=99.83 E-value=1.9e-19 Score=162.81 Aligned_cols=164 Identities=11% Similarity=0.102 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEE
Q psy17305 19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTV 98 (223)
Q Consensus 19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~i 98 (223)
.+.+.++.+.+.++|++++ ++.++++||.++|+++|++++..... .|++++++... .|+|
T Consensus 96 ~~~l~~l~r~lh~~PEls~------~E~~t~~~i~~~L~~~G~~~~~~~~~-------------~~vva~~g~~~-~~~I 155 (478)
T PLN02280 96 VAWLKSVRRKIHENPELAF------EEYKTSELVRSELDRMGIMYRYPLAK-------------TGIRAWIGTGG-PPFV 155 (478)
T ss_pred HHHHHHHHHHHhcCCCCCC------cHHHHHHHHHHHHHHCCCeEEecCCC-------------CEEEEEECCCC-CCEE
Confidence 3455556666677777776 67899999999999999998764221 59999995432 4899
Q ss_pred EEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec------cc--c-
Q psy17305 99 LVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT------GK--N- 169 (223)
Q Consensus 99 ll~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~------g~--~- 169 (223)
+|.|||||||.++...|.++| +++|++||||. |+++++++.|++.|++.+..++++|.+++ |. .
T Consensus 156 ~l~gh~DaVP~~e~~~w~~~p----~~~G~~h~cGh---d~~~A~~l~a~~~L~~~~~~~~g~V~~if~pdEE~g~Ga~~ 228 (478)
T PLN02280 156 AVRADMDALPIQEAVEWEHKS----KVAGKMHACGH---DAHVAMLLGAAKILKSREHLLKGTVVLLFQPAEEAGNGAKR 228 (478)
T ss_pred EEEEecCCCcccCCCCCCCCC----CCCCeEEeCCC---cHHHHHHHHHHHHHHhccccCCceEEEEecccccccchHHH
Confidence 999999999997666799888 67899999983 66999999999999988767777776443 21 0
Q ss_pred ------------eeec-----cC-c---c----------------cCCCCcCCCCccceecccchhhHHHHHHHHHHhhh
Q psy17305 170 ------------VLLL-----PM-G---A----------------SDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVT 212 (223)
Q Consensus 170 ------------~~~~-----~~-g---~----------------~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~ 212 (223)
++.+ ++ + . .+.++|++ .|+.|+||+. ++++.+.+++.+.
T Consensus 229 li~~g~~~~~d~~~~~h~~~~~p~g~ig~~~~~~~~G~~~~~I~v~Gk~aHas-~P~~G~NAI~---~aa~li~~l~~l~ 304 (478)
T PLN02280 229 MIGDGALDDVEAIFAVHVSHEHPTAVIGSRPGPLLAGCGFFRAVISGKKGRAG-SPHHSVDLIL---AASAAVISLQGIV 304 (478)
T ss_pred HHHCCCCcCCCEEEEEecCCCCCCceeEecccccccceeEEEEEEECcchhcC-CcccCcCHHH---HHHHHHHHHHHHH
Confidence 1110 11 1 0 12488977 6999999999 9999999888775
Q ss_pred h
Q psy17305 213 Q 213 (223)
Q Consensus 213 ~ 213 (223)
.
T Consensus 305 ~ 305 (478)
T PLN02280 305 S 305 (478)
T ss_pred h
Confidence 3
No 54
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=99.79 E-value=1.5e-18 Score=154.72 Aligned_cols=110 Identities=18% Similarity=0.231 Sum_probs=89.1
Q ss_pred HHHHHHHHHhhccCC-CCC---CCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCC-CCC
Q psy17305 20 NKFIENLKEAVAIES-VSS---SVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGN-DKA 94 (223)
Q Consensus 20 ~~~i~~l~~lv~i~s-~s~---~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~-~~~ 94 (223)
.++++.|.+|-+|.+ +.+ ...+++++.++++||.++|+++|++++++.. .|+++++.+ +++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G~~v~~~~~--------------gNl~a~~~g~~~~ 75 (414)
T PRK12891 10 ERLWASLERMAQIGATPKGGVCRLALTDGDREARDLFVAWARDAGCTVRVDAM--------------GNLFARRAGRDPD 75 (414)
T ss_pred HHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEECCC--------------CCEEEEecCCCCC
Confidence 467788888888742 211 2235778999999999999999999998754 399999854 334
Q ss_pred ccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305 95 KHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165 (223)
Q Consensus 95 ~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~ 165 (223)
.|+|+|+||+||||++ |.+|||+|++++++|+++|++.+.+++++|.++
T Consensus 76 ~~~l~~~~H~DtVp~g----------------------g~~D~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~ 124 (414)
T PRK12891 76 AAPVMTGSHADSQPTG----------------------GRYDGIYGVLGGLEVVRALNDAGIETERPVDVV 124 (414)
T ss_pred CCeEEEEecccCCCCC----------------------ccccchhhHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 5899999999999997 678999999999999999999998887777543
No 55
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.78 E-value=2.3e-18 Score=153.25 Aligned_cols=134 Identities=14% Similarity=0.192 Sum_probs=114.5
Q ss_pred HHHHHHHHHhhccCC-CCC---CCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcC-CCCC
Q psy17305 20 NKFIENLKEAVAIES-VSS---SVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLG-NDKA 94 (223)
Q Consensus 20 ~~~i~~l~~lv~i~s-~s~---~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~-~~~~ 94 (223)
+++.+.|.+|-+|.+ +.+ +..+++++.++++||++||+++|++++.+..+ |+++++. .+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~Gl~v~~D~~g--------------N~~~~~~g~~~~ 68 (406)
T TIGR03176 3 KHFRQAIEELSSFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESGLETRFDDVG--------------NLYGRLVGTEFP 68 (406)
T ss_pred HHHHHHHHHHhccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCEEEEcCCC--------------cEEEEecCCCCC
Confidence 456677777777732 211 23368889999999999999999999999876 9999984 4556
Q ss_pred ccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEecccceeecc
Q psy17305 95 KHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGKNVLLLP 174 (223)
Q Consensus 95 ~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~g~~~~~~~ 174 (223)
.|+|++.|||||||.+ |.+|++.||++.|+|++.|++.++.++++|.+++
T Consensus 69 ~~~i~~gsHlDtv~~g----------------------G~~dg~~Gv~~~le~~~~l~~~~~~~~~~i~vi~-------- 118 (406)
T TIGR03176 69 EETILTGSHIDTVVNG----------------------GNLDGQFGALAAWLAVDYLKEKYGAPLRTVEVLS-------- 118 (406)
T ss_pred CCeEEEeccccCCCCC----------------------CccCchhhHHHHHHHHHHHHHcCCCCCCCeEEEE--------
Confidence 7999999999999998 8999999999999999999999999999999888
Q ss_pred CcccCCCCcCCCCccceecccchhh
Q psy17305 175 MGASDDGAHSQNEKIDVRNYIEGTK 199 (223)
Q Consensus 175 ~g~~~~~ahag~~~~~g~~ai~g~~ 199 (223)
|.+|++.+|+....|+.++.|..
T Consensus 119 --~~~EEg~rf~~~~~Gs~~~~g~~ 141 (406)
T TIGR03176 119 --MAEEEGSRFPYVFWGSKNIFGLA 141 (406)
T ss_pred --eccccCccCCcccccHHHHhCCC
Confidence 88999999999999999999743
No 56
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=99.78 E-value=1.9e-18 Score=153.80 Aligned_cols=110 Identities=21% Similarity=0.209 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhhccCCCCC---CCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCc
Q psy17305 19 KNKFIENLKEAVAIESVSS---SVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAK 95 (223)
Q Consensus 19 ~~~~i~~l~~lv~i~s~s~---~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~ 95 (223)
.+++++.|.+|++|+|..+ .+..++++.++++||.++|+++|++++++.. .|+++++++..+.
T Consensus 9 ~~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~--------------~nl~a~~~g~~~~ 74 (412)
T PRK12892 9 GQRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGLAVRIDGI--------------GNVFGRLPGPGPG 74 (412)
T ss_pred HHHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCCEEEEcCC--------------CcEEEEecCCCCC
Confidence 4689999999999998111 1223457889999999999999999887543 4999998543334
Q ss_pred cEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEE
Q psy17305 96 HTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKE 164 (223)
Q Consensus 96 ~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~ 164 (223)
|+|+|+||+||||++ |..|+|+|++++|+|+++|++.+..++++|.+
T Consensus 75 ~~l~l~gH~DtVp~~----------------------g~~dg~~Gvaa~l~a~~~l~~~~~~~~~~i~~ 121 (412)
T PRK12892 75 PALLVGSHLDSQNLG----------------------GRYDGALGVVAGLEAARALNEHGIATRHPLDV 121 (412)
T ss_pred CeEEEEccccCCCCC----------------------CcccchHHHHHHHHHHHHHHHcCCCCCCCeEE
Confidence 899999999999986 44677889999999999999998877777753
No 57
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=99.78 E-value=2.8e-18 Score=152.90 Aligned_cols=109 Identities=22% Similarity=0.307 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhhcc-CCCCC---CCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCC-C
Q psy17305 19 KNKFIENLKEAVAI-ESVSS---SVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGND-K 93 (223)
Q Consensus 19 ~~~~i~~l~~lv~i-~s~s~---~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~-~ 93 (223)
.+++++.|++|++| ++... .+..++++.++++||.++|+++|++++++.. .||++++++. +
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g~~~~~~~~--------------~nl~a~~~g~~~ 71 (413)
T PRK09290 6 AERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAGLTVRVDAV--------------GNLFGRLEGRDP 71 (413)
T ss_pred HHHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcCCEEEEcCC--------------CcEEEEecCCCC
Confidence 47899999999999 32221 1123557899999999999999999887432 4999998543 2
Q ss_pred CccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeE
Q psy17305 94 AKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163 (223)
Q Consensus 94 ~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~ 163 (223)
..|+|+|+||+||||++ |..|||+|++++++|+++|++.+.+++++|.
T Consensus 72 ~~~~l~l~gH~DtVp~~----------------------g~~d~k~g~aa~l~a~~~l~~~~~~~~~~i~ 119 (413)
T PRK09290 72 DAPAVLTGSHLDTVPNG----------------------GRFDGPLGVLAGLEAVRTLNERGIRPRRPIE 119 (413)
T ss_pred CCCEEEEecCccCCCCC----------------------CCcCCHHHHHHHHHHHHHHHHcCCCCCCCeE
Confidence 35899999999999986 5679999999999999999998877666665
No 58
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=99.77 E-value=7.5e-18 Score=149.99 Aligned_cols=111 Identities=21% Similarity=0.256 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhhccCCCCCCC----CCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCC-CC
Q psy17305 19 KNKFIENLKEAVAIESVSSSV----QHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGN-DK 93 (223)
Q Consensus 19 ~~~~i~~l~~lv~i~s~s~~~----~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~-~~ 93 (223)
.++++++|++|++|+|.+... ..++++.++++||.++|+++|++++++.. .|+++++.+ ++
T Consensus 9 ~~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~~~~~~~~--------------~n~~a~~~g~~~ 74 (412)
T PRK12893 9 GERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGLTVSVDAI--------------GNLFGRRAGTDP 74 (412)
T ss_pred HHHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCCEEEEcCC--------------CcEEEEeCCCCC
Confidence 478999999999999854211 13567889999999999999999887432 389999844 32
Q ss_pred CccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305 94 AKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165 (223)
Q Consensus 94 ~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~ 165 (223)
+.|+|+|.||+||||++ |..|+|+|++++|.|+++|++.+..++++|.++
T Consensus 75 ~~~~l~l~~H~DtVp~~----------------------g~~dgk~gvaa~l~a~~~l~~~~~~~~~~v~~~ 124 (412)
T PRK12893 75 DAPPVLIGSHLDTQPTG----------------------GRFDGALGVLAALEVVRTLNDAGIRTRRPIEVV 124 (412)
T ss_pred CCCEEEEEecccCCCCC----------------------CcccchhhHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 35899999999999986 457889999999999999999887777777543
No 59
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=99.77 E-value=8.6e-18 Score=149.78 Aligned_cols=109 Identities=18% Similarity=0.220 Sum_probs=88.7
Q ss_pred HHHHHHHHHhhccCCCC---CCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCC-CCc
Q psy17305 20 NKFIENLKEAVAIESVS---SSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGND-KAK 95 (223)
Q Consensus 20 ~~~i~~l~~lv~i~s~s---~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~-~~~ 95 (223)
+++++.|.+|.+||... .++..++++.++++||.++|+++|++++++.. .|+++++++. ++.
T Consensus 9 ~~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~--------------~nlia~~~g~~~~~ 74 (414)
T PRK12890 9 ERLLARLEELAAIGRDGPGWTRLALSDEERAARALLAAWMRAAGLEVRRDAA--------------GNLFGRLPGRDPDL 74 (414)
T ss_pred HHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEEcCC--------------CcEEEEeCCCCCCC
Confidence 57888999999888321 12233457899999999999999999987642 4999999543 346
Q ss_pred cEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEE
Q psy17305 96 HTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKE 164 (223)
Q Consensus 96 ~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~ 164 (223)
|+|+|+|||||||++ |..|||+|++++|+|+++|++.+..++++|.+
T Consensus 75 ~~l~~~~H~DtVp~~----------------------g~~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~ 121 (414)
T PRK12890 75 PPLMTGSHLDTVPNG----------------------GRYDGILGVLAGLEVVAALREAGIRPPHPLEV 121 (414)
T ss_pred CEEEEeCcccCCCCC----------------------CCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEE
Confidence 899999999999986 67899999999999999999988777777754
No 60
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.75 E-value=1.3e-17 Score=154.57 Aligned_cols=134 Identities=11% Similarity=0.147 Sum_probs=114.3
Q ss_pred HHHHHHHHHHhhccCCCCCCC-------CCchHHHHHHHHHHHHHHhcCC-cEEEEecCCCCCCCCCCCCCCcEEEEEcC
Q psy17305 19 KNKFIENLKEAVAIESVSSSV-------QHRPQTINMIHYFADKLKQLGA-TVEICDIGNQTLPNGESIKYPPVILGNLG 90 (223)
Q Consensus 19 ~~~~i~~l~~lv~i~s~s~~~-------~~~~~~~~~~~~l~~~l~~~G~-~~~~~~~~~~~~~~g~~~~~~~nl~a~~~ 90 (223)
.+++.+.|.+|-+|+.+++.+ .+++++.++++||.+||+++|+ +++.+..+ |+++++.
T Consensus 180 ~~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~Gl~~v~~D~~G--------------Nl~~~~~ 245 (591)
T PRK13590 180 GNDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCGFDEVHIDAVG--------------NVVGRYK 245 (591)
T ss_pred HHHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcCCCeeeECCCC--------------CEEEEec
Confidence 367788888898886544311 2588899999999999999999 88888775 9999984
Q ss_pred C-CCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEecccc
Q psy17305 91 N-DKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGKN 169 (223)
Q Consensus 91 ~-~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~g~~ 169 (223)
+ +++.|+|++.|||||||.+ |.+|+++||+++|++++.|++.++.++++|.++.
T Consensus 246 g~~~~~~~v~~gsHlDTV~~g----------------------G~~DG~~Gv~a~lea~~~l~~~~~~~~~~i~vv~--- 300 (591)
T PRK13590 246 GSTPQAKRLLTGSHYDTVRNG----------------------GKYDGRLGIFVPMACVRELHRQGRRLPFGLEVVG--- 300 (591)
T ss_pred CCCCCCCeEEEecccccCCCC----------------------CCcccHHHHHHHHHHHHHHHHcCCCCCCCeEEEE---
Confidence 3 4446899999999999997 8899999999999999999999998888998887
Q ss_pred eeeccCcccCCCCcCCCCccceecccchh
Q psy17305 170 VLLLPMGASDDGAHSQNEKIDVRNYIEGT 198 (223)
Q Consensus 170 ~~~~~~g~~~~~ahag~~~~~g~~ai~g~ 198 (223)
+.+|++.+|+....|+.++.|.
T Consensus 301 -------~~~EEg~rF~~~~~GS~~~~G~ 322 (591)
T PRK13590 301 -------FAEEEGQRYKATFLGSGALIGD 322 (591)
T ss_pred -------ecCCccccCCccccchHHHhCC
Confidence 8899998899889999988873
No 61
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.75 E-value=1.5e-17 Score=154.15 Aligned_cols=133 Identities=12% Similarity=0.196 Sum_probs=116.0
Q ss_pred HHHHHHHHHHhhccCCCCCCC-------CCchHHHHHHHHHHHHHHhcCCc-EEEEecCCCCCCCCCCCCCCcEEEEEcC
Q psy17305 19 KNKFIENLKEAVAIESVSSSV-------QHRPQTINMIHYFADKLKQLGAT-VEICDIGNQTLPNGESIKYPPVILGNLG 90 (223)
Q Consensus 19 ~~~~i~~l~~lv~i~s~s~~~-------~~~~~~~~~~~~l~~~l~~~G~~-~~~~~~~~~~~~~g~~~~~~~nl~a~~~ 90 (223)
.+++.+.|.+|.+|+.++..+ .++++..++++||.+||+++|++ ++.+..+ ||++++.
T Consensus 180 ~~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~Gl~~v~~D~~g--------------Nv~~~~~ 245 (591)
T PRK13799 180 GADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAGFDEVEIDAVG--------------NVVGRYK 245 (591)
T ss_pred HHHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCCeEeECCCC--------------CEEEEcC
Confidence 467888999999986432222 25888999999999999999998 9999886 9999984
Q ss_pred -CCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEecccc
Q psy17305 91 -NDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGKN 169 (223)
Q Consensus 91 -~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~g~~ 169 (223)
.+++.|+|++.||+||||.+ |.+|+-.||+++|++++.|++.+++++++|.++.
T Consensus 246 g~~~~~p~v~~gSHlDTV~~g----------------------G~~DG~~Gv~a~l~~~~~l~~~~~~~~~~i~vi~--- 300 (591)
T PRK13799 246 AADDDAKTLITGSHYDTVRNG----------------------GKYDGREGIFLAIACVKELHEQGERLPFHFEVIA--- 300 (591)
T ss_pred CCCCCCCeEEEeccccccCCC----------------------CccccHHHHHHHHHHHHHHHHcCCCCCCCeEEEE---
Confidence 44567999999999999997 8889999999999999999999999999999887
Q ss_pred eeeccCcccCCCCcCCCCccceecccch
Q psy17305 170 VLLLPMGASDDGAHSQNEKIDVRNYIEG 197 (223)
Q Consensus 170 ~~~~~~g~~~~~ahag~~~~~g~~ai~g 197 (223)
|.+|++.+|+....|+.++.|
T Consensus 301 -------~~~EEg~rF~~~~~GS~~~~G 321 (591)
T PRK13799 301 -------FAEEEGQRFKATFLGSGALIG 321 (591)
T ss_pred -------ecCCCccCCCccccchHHHhC
Confidence 889999999999999999987
No 62
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=99.66 E-value=2.1e-16 Score=125.54 Aligned_cols=66 Identities=39% Similarity=0.806 Sum_probs=60.7
Q ss_pred EEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305 99 LVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT 166 (223)
Q Consensus 99 ll~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~ 166 (223)
+|++|||||| . .++|.++||.+.+++|++||||+.|||++++++++|++.|++.+..++.+|.+++
T Consensus 1 ll~~H~Dtv~-~-~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~ 66 (189)
T PF01546_consen 1 LLYAHMDTVP-G-PEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLF 66 (189)
T ss_dssp EEEEES-BCS-T-GGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEE
T ss_pred CccccccccC-C-cCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccc
Confidence 6899999999 5 6789999999999999999999999999999999999999998888999998765
No 63
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.64 E-value=3e-15 Score=132.97 Aligned_cols=130 Identities=15% Similarity=0.163 Sum_probs=99.1
Q ss_pred HHHHHHHhhccCCCC-C---CCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCC-CCcc
Q psy17305 22 FIENLKEAVAIESVS-S---SVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGND-KAKH 96 (223)
Q Consensus 22 ~i~~l~~lv~i~s~s-~---~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~-~~~~ 96 (223)
+.+.|..+-++.+.. + ....++++.++++||+++|+++|+++++++. .||++++++. ++.|
T Consensus 3 ~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~~~~~G~~~~~~~~--------------~nl~a~~~g~~~~~~ 68 (401)
T TIGR01879 3 LWETLMWLGEVGADPAGGMTRLALSPEDREAQDLFKKRMRAAGLEVRFDEV--------------GNLIGRKEGTEPPLE 68 (401)
T ss_pred HHHHHHHHhcccCCCCCceEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecC--------------CcEEEEecCCCCCCC
Confidence 455666666653211 1 1224678999999999999999999988754 3999999643 3458
Q ss_pred EEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEecccceeeccCc
Q psy17305 97 TVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGKNVLLLPMG 176 (223)
Q Consensus 97 ~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~g~~~~~~~~g 176 (223)
+|+|+||+||||++ |..|++.|++++|+|+++|++.++.++++|.+++
T Consensus 69 ~l~~~~H~DtV~~g----------------------g~~dg~~gvaa~l~a~~~l~~~g~~~~~~i~~~~---------- 116 (401)
T TIGR01879 69 VVLSGSHIDTVVNG----------------------GNFDGQLGVLAGIEVVDALKEAYVVPLHPIEVVA---------- 116 (401)
T ss_pred EEEEecccccCCCC----------------------CccCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEE----------
Confidence 99999999999986 5678889999999999999999998999998877
Q ss_pred ccCCCCcCCCCccceecccch
Q psy17305 177 ASDDGAHSQNEKIDVRNYIEG 197 (223)
Q Consensus 177 ~~~~~ahag~~~~~g~~ai~g 197 (223)
+.+|++-+|.....|+.++.|
T Consensus 117 ~~dEE~~~f~~~~~Gs~~~~~ 137 (401)
T TIGR01879 117 FTEEEGSRFPYGMWGSRNMVG 137 (401)
T ss_pred EeCCcCcCcccccccHHHHhc
Confidence 677776555555566555543
No 64
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=99.56 E-value=2e-14 Score=124.97 Aligned_cols=138 Identities=20% Similarity=0.222 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCC-cEEEEecCCCCCC-C--CCCCCCCcEEEEEcCCCCC
Q psy17305 19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGA-TVEICDIGNQTLP-N--GESIKYPPVILGNLGNDKA 94 (223)
Q Consensus 19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~-~~~~~~~~~~~~~-~--g~~~~~~~nl~a~~~~~~~ 94 (223)
.+++.++..+||+.||+++.+ ++...+++|...|.++.+ +-+-.+.....+. + |+ .||+|...++.+
T Consensus 7 ~e~v~~lt~~LV~~~SvtgT~----GE~a~ad~l~~vL~~~pYFqehped~~~~pi~nDpygR-----~nv~AlVrg~~~ 77 (553)
T COG4187 7 SERVRALTLSLVSWPSVTGTP----GEGAFADRLLGVLGELPYFQEHPEDLWLQPIHNDPYGR-----RNVFALVRGGTS 77 (553)
T ss_pred HHHHHHHHHHHeeccccCCCc----ccccHHHHHHHHHhcCchhhhChHhhcccCCCCCcccc-----ceeEEEEecCCC
Confidence 478889999999999999865 588899999999998875 2222222211111 1 43 699999866556
Q ss_pred ccEEEEEeccccCCCCCCCC---CCCCCCc----------e--------eeeCCeEEecCCCCCchhHHHHHHHHHHHHH
Q psy17305 95 KHTVLVYGHLDVQPAEKEDG---WNTEPFV----------L--------TLKDEKLYGRGASDDKGPVLGWLHAIEAFQQ 153 (223)
Q Consensus 95 ~~~ill~~H~DtVp~~~~~~---w~~~P~~----------~--------~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~ 153 (223)
+.+|++.||+|||...+... .+.+|.. . -..|+||+|||+.|||+|+++.|.+|+.+.+
T Consensus 78 k~tvvl~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMKsGlav~la~L~~fa~ 157 (553)
T COG4187 78 KRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDMKSGLAVHLACLEEFAA 157 (553)
T ss_pred CceEEEeeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhhhhhHHHHHHHHHHhh
Confidence 78999999999997655333 3345511 0 0247999999999999999999999999988
Q ss_pred ccCCCceeeEEec
Q psy17305 154 TKKNVPVNIKEVT 166 (223)
Q Consensus 154 ~~~~~~~~i~~~~ 166 (223)
. ...++|+.++.
T Consensus 158 ~-~~~~GNlLf~a 169 (553)
T COG4187 158 R-TDRQGNLLFMA 169 (553)
T ss_pred C-CCCCCcEEEEe
Confidence 7 46788987664
No 65
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=99.53 E-value=1.5e-13 Score=119.52 Aligned_cols=125 Identities=27% Similarity=0.363 Sum_probs=94.9
Q ss_pred HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEE
Q psy17305 20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL 99 (223)
Q Consensus 20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~il 99 (223)
+.++++|++|+++||+|+ .+.++++++.++|+++|++++.+..+ |+++.+.+..+.++|+
T Consensus 3 ~~~~~lLk~Lv~~~s~SG------~E~~V~~~l~~~l~~~g~ev~~D~~G--------------nlia~~~g~~~~~~v~ 62 (343)
T TIGR03106 3 DYLTETLLALLAIPSPTG------FTDAVVRYVAERLEDLGIEYELTRRG--------------AIRATLPGREATPARA 62 (343)
T ss_pred HHHHHHHHHHhcCCCCCC------CHHHHHHHHHHHHHHcCCeEEECCCe--------------EEEEEECCCCCCCeEE
Confidence 568899999999999998 57899999999999999998876543 9999874433357999
Q ss_pred EEeccccCCCCC-------------------------------CCC------C--CC-------------CCCc---e--
Q psy17305 100 VYGHLDVQPAEK-------------------------------EDG------W--NT-------------EPFV---L-- 122 (223)
Q Consensus 100 l~~H~DtVp~~~-------------------------------~~~------w--~~-------------~P~~---~-- 122 (223)
|.+|||||.--- .++ + .. .++. .
T Consensus 63 l~aHmDevG~~V~~I~~~G~l~~~~iGG~~~~~l~g~~v~i~t~~g~~~Gvi~~~~~~~H~~~~~~~~~~~~~~~~~l~i 142 (343)
T TIGR03106 63 VVTHLDTLGAMVRELKDNGRLELVPIGHWSARFAEGARVTIFTDSGEFRGTILPLKASGHAFNEEIDSQPTGWDHVEVRV 142 (343)
T ss_pred EEEeeccccceeeEECCCCeEEEEecCCCcccceeCCEEEEEeCCCeEEEEECCCCCCCccCChHHccCCCCCcccEEEE
Confidence 999999984310 011 1 00 1111 0
Q ss_pred ----------------------------eeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305 123 ----------------------------TLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165 (223)
Q Consensus 123 ----------------------------~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~ 165 (223)
...++++|||+ .|||+|++++++++++|++.+.+++.++.++
T Consensus 143 DiG~~s~ee~~~lGV~~Gd~v~~~~~~~~~~~~~i~gr~-~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~ 212 (343)
T TIGR03106 143 DARASCRADLVRLGISVGDFVAFDPQPEFLANGFIVSRH-LDDKAGVAALLAALKAIVEHKVPLPVDVHPL 212 (343)
T ss_pred ECCcCCHHHHHHcCCCCCCEEEECCccEEecCCEEEEEe-cccHHhHHHHHHHHHHHHhcCCCCCceEEEE
Confidence 12478999998 9999999999999999998876666666544
No 66
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.51 E-value=3.6e-13 Score=116.31 Aligned_cols=114 Identities=15% Similarity=0.223 Sum_probs=77.8
Q ss_pred chHHHHHHHHHHHHHHhcCCcEEEEecCCC---CCCCCCCC---CCCcEEEEEcCCCCCccEEEEEeccccCCCCCCCCC
Q psy17305 42 RPQTINMIHYFADKLKQLGATVEICDIGNQ---TLPNGESI---KYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGW 115 (223)
Q Consensus 42 ~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~---~~~~g~~~---~~~~nl~a~~~~~~~~~~ill~~H~DtVp~~~~~~w 115 (223)
++++.++++||+++|+++|++++.+..... ....++.. ....||++.+.+. ..++|+|.+|||||++....
T Consensus 51 S~~E~~aA~yL~~~f~~lG~~v~~q~f~~~~~~~~~~g~~~~~~~~g~nVIa~~~G~-~~~~Ill~AH~DTV~p~~~~-- 127 (346)
T PRK10199 51 SPAEMLSADYLRQQFQQMGYQSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGK-APQQIIIMAHLDTYAPQSDA-- 127 (346)
T ss_pred CHHHHHHHHHHHHHHHHCCCceEeeeccccceeecccccccccCCccceEEEEECCC-CCCeEEEEEEcCcCCCCCCC--
Confidence 447889999999999999999876553210 00011100 0125899998553 35789999999999753211
Q ss_pred CCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305 116 NTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165 (223)
Q Consensus 116 ~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~ 165 (223)
..++ ..+.+|++|+.|||+|++++|++++.|++.+ ++.+|.++
T Consensus 128 -~~~~----~~~g~~~~GA~DnasGvA~lLe~ar~l~~~~--~~~~I~fv 170 (346)
T PRK10199 128 -DVDA----NLGGLTLQGMDDNAAGLGVMLELAERLKNVP--TEYGIRFV 170 (346)
T ss_pred -cccc----CCCCcccCCccccHHHHHHHHHHHHHHhhCC--CCCcEEEE
Confidence 1122 1122899999999999999999999998654 44566644
No 67
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=99.33 E-value=4.8e-11 Score=105.27 Aligned_cols=175 Identities=19% Similarity=0.249 Sum_probs=130.9
Q ss_pred HHHHHHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcC
Q psy17305 11 ISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLG 90 (223)
Q Consensus 11 ~~~~i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~ 90 (223)
+.+++ ...++++++-+.|-++|..++ +|.+.+.|+.+.|+++|+++...... ...+++.++
T Consensus 4 ~~~~~-~~~~~l~~~rr~lH~~PEL~f------~E~~Ta~~i~~~L~~~g~~~~~~~~~------------~TGvva~~~ 64 (392)
T COG1473 4 ILDEI-ELKDELIEWRRDLHEHPELGF------EEYRTAAYIAEKLEELGFEVVEVGGG------------KTGVVATLK 64 (392)
T ss_pred HHHHH-hhhHHHHHHHHHHhhCCccch------hHHHHHHHHHHHHHHcCCeeEeccCC------------ceEEEEEEc
Confidence 33444 556889999999999999999 78899999999999999993332221 158999997
Q ss_pred CCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec----
Q psy17305 91 NDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT---- 166 (223)
Q Consensus 91 ~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~---- 166 (223)
++.++|+|.|.+-||.+|..... .-||.. ...|+++++|. -+..++.|.+++.|.+..-.++++|++++
T Consensus 65 ~g~~g~tIalRAD~DALPi~E~t---~~~~~S-~~~G~mHACGH---D~Hta~lLgaA~~L~~~~~~~~Gtv~~ifQPAE 137 (392)
T COG1473 65 GGKPGPTIALRADMDALPIQEET---GLPFAS-KNPGVMHACGH---DGHTAILLGAALALAEHKDNLPGTVRLIFQPAE 137 (392)
T ss_pred CCCCCCEEEEEeecccCcccccc---CCCccc-CCCCCcccCCc---hHHHHHHHHHHHHHHhhhhhCCcEEEEEecccc
Confidence 66556799999999999985332 357764 55669999987 46677788888899887667889998664
Q ss_pred --c-cceeeccCcc-c---------------------------------------CCCCcCCCCccceecccchhhHHHH
Q psy17305 167 --G-KNVLLLPMGA-S---------------------------------------DDGAHSQNEKIDVRNYIEGTKLLAA 203 (223)
Q Consensus 167 --g-~~~~~~~~g~-~---------------------------------------~~~ahag~~~~~g~~ai~g~~~~a~ 203 (223)
+ ....+++.|. . +.++|+ ..|..+++++. .++.
T Consensus 138 E~~~Ga~~mi~~G~~~~~vD~v~g~H~~p~~~~g~v~~~~G~~~aa~d~~~i~~~GkggH~-a~Ph~~~d~i~---aa~~ 213 (392)
T COG1473 138 EGGGGAKAMIEDGVFDDFVDAVFGLHPGPGLPVGTVALRPGALMAAADEFEITFKGKGGHA-AAPHLGIDALV---AAAQ 213 (392)
T ss_pred cccccHHHHHhcCCccccccEEEEecCCCCCCCceEEeecccceeecceEEEEEEeCCccc-CCcccccCHHH---HHHH
Confidence 1 2222222221 0 138998 99999999999 8888
Q ss_pred HHHHHHhhhhhh
Q psy17305 204 YLYEISKVTQAE 215 (223)
Q Consensus 204 ~~~~l~~l~~~~ 215 (223)
.+..|+.+....
T Consensus 214 ~v~~lq~ivsr~ 225 (392)
T COG1473 214 LVTALQTIVSRN 225 (392)
T ss_pred HHHHHHHHHhcc
Confidence 888888776543
No 68
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=99.14 E-value=6.1e-10 Score=96.63 Aligned_cols=68 Identities=22% Similarity=0.381 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEE
Q psy17305 20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL 99 (223)
Q Consensus 20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~il 99 (223)
+.++++|++|++++++|+ .++++.+++++.|++++.+++++..| ||++++++..+.+.|+
T Consensus 2 ~~~~~~LkeL~~~~gpsG------~E~eVr~~~~~el~~~~~ev~~D~lG--------------nlia~~~g~~g~~~im 61 (355)
T COG1363 2 EELLELLKELLEAPGPSG------YEEEVRDVLKEELEPLGDEVEVDRLG--------------NLIAKKGGKNGPPKVM 61 (355)
T ss_pred hHHHHHHHHHHcCCCCCC------cHHHHHHHHHHHHHHhCCceEEcCCC--------------cEEEEecCCCCCccEE
Confidence 457889999999999999 57789999999999999999998876 9999997633345699
Q ss_pred EEeccccC
Q psy17305 100 VYGHLDVQ 107 (223)
Q Consensus 100 l~~H~DtV 107 (223)
+.+|||+|
T Consensus 62 i~AHmDEi 69 (355)
T COG1363 62 IAAHMDEI 69 (355)
T ss_pred EEeeccee
Confidence 99999997
No 69
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=98.99 E-value=3.2e-09 Score=92.63 Aligned_cols=65 Identities=22% Similarity=0.314 Sum_probs=55.8
Q ss_pred HHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCC-CCccEEEEEe
Q psy17305 24 ENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGND-KAKHTVLVYG 102 (223)
Q Consensus 24 ~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~-~~~~~ill~~ 102 (223)
++|++|+++|++|+ .|++++++++++|++++.+++.+..+ |+++.+++. .+.|+|+|.+
T Consensus 2 ~~L~~L~~~~gpSG------~E~~v~~~i~~~l~~~~~~v~~D~~G--------------Nvia~~~g~~~~~~~vml~A 61 (350)
T TIGR03107 2 NKIKEVTELQGTSG------FEHPIRDYLRQDITPLVDQVETDGLG--------------GIFGIKESQVENAPRVMVAA 61 (350)
T ss_pred hHHHHHHhCCCCCC------CcHHHHHHHHHHHHhhCCEEEECCCC--------------CEEEEecCCCCCCCEEEEEe
Confidence 46999999999999 57899999999999999999888775 999987542 3357999999
Q ss_pred ccccCC
Q psy17305 103 HLDVQP 108 (223)
Q Consensus 103 H~DtVp 108 (223)
|||+|+
T Consensus 62 HmDeVG 67 (350)
T TIGR03107 62 HMDEVG 67 (350)
T ss_pred cccEeC
Confidence 999983
No 70
>PRK09864 putative peptidase; Provisional
Probab=98.92 E-value=8.7e-09 Score=89.98 Aligned_cols=64 Identities=20% Similarity=0.285 Sum_probs=55.1
Q ss_pred HHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEEe
Q psy17305 23 IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYG 102 (223)
Q Consensus 23 i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~~ 102 (223)
+++|++|+++|++|+ .|++++++++++|+.++.+++.+..| |+++..+ .+.++|+|.+
T Consensus 3 ~~~L~~L~~~~g~SG------~E~~v~~~l~~~l~~~~dev~~D~~G--------------Nli~~~g--~~~~kvml~A 60 (356)
T PRK09864 3 IELLQQLCEASAVSG------DEQEVRDILINTLEPCVNEITFDGLG--------------SFVARKG--NKGPKVAVVG 60 (356)
T ss_pred HHHHHHHHcCCCCCC------chHHHHHHHHHHHHHhCCEEEECCCC--------------CEEEEeC--CCCcEEEEEe
Confidence 457999999999999 58899999999999999999888775 8998863 2346999999
Q ss_pred ccccCC
Q psy17305 103 HLDVQP 108 (223)
Q Consensus 103 H~DtVp 108 (223)
|||+|+
T Consensus 61 HmDevG 66 (356)
T PRK09864 61 HMDEVG 66 (356)
T ss_pred cccccC
Confidence 999983
No 71
>PRK09961 exoaminopeptidase; Provisional
Probab=98.79 E-value=1.7e-08 Score=88.16 Aligned_cols=66 Identities=17% Similarity=0.274 Sum_probs=55.5
Q ss_pred HHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEEEEe
Q psy17305 23 IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYG 102 (223)
Q Consensus 23 i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~ill~~ 102 (223)
+++|++|+++||+|+ .|.+++++++++|+++|.+++.+..+ |+++++++. +.|+|+|.+
T Consensus 3 ~~~L~~L~~~~s~sG------~E~~v~~~i~~~l~~~~~~v~~D~~G--------------nvi~~~~g~-~~~~v~l~a 61 (344)
T PRK09961 3 LSLLKALSEADAIAS------SEQEVRQILLEEADRLQKEVRFDGLG--------------SVLIRLNES-TGPKVMICA 61 (344)
T ss_pred HHHHHHHHhCCCCCC------ChHHHHHHHHHHHHhhCCEEEECCCC--------------CEEEEEcCC-CCCEEEEEe
Confidence 357999999999999 57799999999999999998876554 899987443 357999999
Q ss_pred ccccCCC
Q psy17305 103 HLDVQPA 109 (223)
Q Consensus 103 H~DtVp~ 109 (223)
|||+|+.
T Consensus 62 HmDevg~ 68 (344)
T PRK09961 62 HMDEVGF 68 (344)
T ss_pred ccceece
Confidence 9999954
No 72
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=98.64 E-value=1.4e-07 Score=83.76 Aligned_cols=179 Identities=20% Similarity=0.214 Sum_probs=111.8
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCC-CCccE
Q psy17305 19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGND-KAKHT 97 (223)
Q Consensus 19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~-~~~~~ 97 (223)
.++++++|.+|+.||++|.. +.+.+.++.+|++.+|+.++ ++.+.-.+.+-.. ...+.+.+.+.+. +.-|.
T Consensus 4 ~~~l~~~F~~~~kI~~~S~~------e~~~~p~~~~~~k~~~~~v~-dE~~~i~~~~~a~-~~~~~~~~~L~a~~d~V~~ 75 (414)
T COG2195 4 MERLLDRFLELVKIPTQSKH------EKAVAPSTVGQAKLLGLLVE-DELGNIGLKKPAT-AGENYVPAVLQAHLDMVPE 75 (414)
T ss_pred hHHHHHHHHHHeeCCCCCCC------ccccccccHHHHHHcCchhh-hhhcccccccccc-CCCCeeeEEeecccccccc
Confidence 47899999999999999994 56899999999999999985 5554322211000 0002455555442 24688
Q ss_pred EEEEeccccCCCCC----CCCC------------------C---CCCCceeee-CCeEEecCC----CCCchhHHHHHHH
Q psy17305 98 VLVYGHLDVQPAEK----EDGW------------------N---TEPFVLTLK-DEKLYGRGA----SDDKGPVLGWLHA 147 (223)
Q Consensus 98 ill~~H~DtVp~~~----~~~w------------------~---~~P~~~~~~-~~~lyGrG~----~D~K~gv~~~l~a 147 (223)
+-+.+|+||+|... ..+| - +.|...... .+.+.-.|+ .|+|+|++.++.+
T Consensus 76 i~~~sh~Dt~~d~~~~~v~~~~l~~~~Gad~i~~~~~~a~L~~~~~P~~~~~t~~~ei~~dGa~LLgaD~kAGia~i~~a 155 (414)
T COG2195 76 IGFISHHDTVPDPIGPNVNPQILKATLGADNIGLAIGLAVLSPEHFPLEVLLTGDEEITTDGATLLGADDKAGIAEIMTA 155 (414)
T ss_pred ccccccccccccccccccCCceeeeccCcchhhhhhHHhhcCcccCCceeeeecceEEeccCccccCCcchhHHHHHHHH
Confidence 99999999996421 0112 1 223322222 244555566 4999999999999
Q ss_pred HHHHHHcc-CCCceeeEEeccc--------------------ceeeccCccc------------------CCCCcCCCCc
Q psy17305 148 IEAFQQTK-KNVPVNIKEVTGK--------------------NVLLLPMGAS------------------DDGAHSQNEK 188 (223)
Q Consensus 148 l~~l~~~~-~~~~~~i~~~~g~--------------------~~~~~~~g~~------------------~~~ahag~~~ 188 (223)
+..+++.. .-+.++|++.++. -.+.+..|.. +..+|++.++
T Consensus 156 l~~~~~~~~~i~h~~i~~g~s~~Ee~g~rg~~~~~~a~f~a~~ay~iDGg~~g~i~~ea~~~~~~~~~~~g~~~h~~~a~ 235 (414)
T COG2195 156 LSVLREKHPEIPHGGIRGGFSPDEEIGGRGAANKDVARFLADFAYTLDGGPVGEIPREAFNAAAVRATIVGPNVHPGSAK 235 (414)
T ss_pred HHHHhhcCccccccCeEEEecchHHhhhhhhhhccHHhhhcceeEecCCCccCeeeeeccchheeeeeeeccCcCccchH
Confidence 99999763 2234566644321 0222221211 2267888888
Q ss_pred cceecccchhhHHHHHHHHH
Q psy17305 189 IDVRNYIEGTKLLAAYLYEI 208 (223)
Q Consensus 189 ~~g~~ai~g~~~~a~~~~~l 208 (223)
...+||+. ....+...+
T Consensus 236 ~~~i~a~~---~a~e~~~~~ 252 (414)
T COG2195 236 GKMINALL---LAAEFILEL 252 (414)
T ss_pred HHHhhHHH---hhhhhhhcC
Confidence 88888888 666665544
No 73
>KOG2194|consensus
Probab=98.58 E-value=4.8e-07 Score=85.37 Aligned_cols=123 Identities=15% Similarity=0.218 Sum_probs=81.6
Q ss_pred HHHHHHHHHhhcc-CCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEE---------EecCCCCCCCC--CCCCCCcEEEE
Q psy17305 20 NKFIENLKEAVAI-ESVSSSVQHRPQTINMIHYFADKLKQLGATVEI---------CDIGNQTLPNG--ESIKYPPVILG 87 (223)
Q Consensus 20 ~~~i~~l~~lv~i-~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~---------~~~~~~~~~~g--~~~~~~~nl~a 87 (223)
++..+.+.++.++ |.+.+... .+..+.+++.+.+.++.-.... +........++ ..++.-.||+.
T Consensus 57 ~rA~~~l~~ls~~G~~~~gS~~---ne~~a~~~il~e~~~i~~~~~~~~~~~Evd~q~~sg~~~~~~~~~~Y~~i~NIvV 133 (834)
T KOG2194|consen 57 ARALKDLLSLSAAGPHPVGSDN---NEMHASSFILKEVNKIRKGSQSDLYDMEVDLQSASGSFILEGMTLVYQNISNIVV 133 (834)
T ss_pred HHHHHHHHHHHhcCCcccCchh---hHHHHHHHHHHHHHHHHhhhhcchhhheeceeeccceeeehhhhheeeeeeeEEE
Confidence 5667777788777 55555443 5567888888887765432222 11111101111 11122369999
Q ss_pred EcCC-CCC-ccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305 88 NLGN-DKA-KHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165 (223)
Q Consensus 88 ~~~~-~~~-~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~ 165 (223)
++++ ... .-.||+++|+||||.+. |+.|+..+|+.+|+++|.+.+....+..+|.++
T Consensus 134 ki~~k~~~~~~~lLlnaHfDSvpt~~---------------------gAtDDg~~va~mLe~lRv~s~~~~~l~~~vVFL 192 (834)
T KOG2194|consen 134 KISPKNGNDKNALLLNAHFDSVPTGP---------------------GATDDGSGVASMLEALRVLSKSDKLLTHSVVFL 192 (834)
T ss_pred ecCCCCCCccceeeeeccccccCCCC---------------------CCCcchhHHHHHHHHHHHhhcCCCcccccEEEE
Confidence 9843 222 34799999999999863 999999999999999999998876666777665
Q ss_pred c
Q psy17305 166 T 166 (223)
Q Consensus 166 ~ 166 (223)
+
T Consensus 193 f 193 (834)
T KOG2194|consen 193 F 193 (834)
T ss_pred e
Confidence 4
No 74
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=98.03 E-value=8.7e-06 Score=64.18 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=40.9
Q ss_pred EEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305 97 TVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT 166 (223)
Q Consensus 97 ~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~ 166 (223)
.|++.+|+|+++.. .. . -+++|+.|+.+|++++|+.++.|.+.+.++.++|.|++
T Consensus 2 ~ivi~aH~Ds~~~~-~~---~-----------~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~ 56 (179)
T PF04389_consen 2 YIVIGAHYDSVGGD-AD---G-----------SWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVF 56 (179)
T ss_dssp EEEEEEE--BESCC-C----T-----------CSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEE
T ss_pred EEEEEeecCCCCCc-CC---C-----------cccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEE
Confidence 68999999999821 10 0 23569999999999999999999997766778888765
No 75
>KOG3946|consensus
Probab=96.97 E-value=0.013 Score=49.38 Aligned_cols=109 Identities=21% Similarity=0.269 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEE
Q psy17305 19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTV 98 (223)
Q Consensus 19 ~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~i 98 (223)
..++.+.|..+. +|...+.+ +-.++.+||.+.|+.+|+.++.+.+...... |. ..-.|++++..... ...+
T Consensus 50 ~~~~~~~L~p~l-v~Rvpgs~----g~~~vr~~i~~~l~~l~w~ve~~~f~~~tp~-g~--~~f~nii~tl~~~A-~r~l 120 (338)
T KOG3946|consen 50 WNRLWENLLPIL-VPRVPGSP----GSRQVRRFIIQHLRNLGWAVETDAFTDNTPL-GT--RNFNNLIATLDPNA-SRYL 120 (338)
T ss_pred HHHHHHhhhhhh-ccccCCCC----ccHHHHHHHHHHHHhcCceeeeccccccCcc-ee--eeeeeEEEecCCCc-chhe
Confidence 355666655554 24333322 4678999999999999999988776543211 11 00158999986543 4578
Q ss_pred EEEeccccC-CCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHc
Q psy17305 99 LVYGHLDVQ-PAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQT 154 (223)
Q Consensus 99 ll~~H~DtV-p~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~ 154 (223)
++.+|||+- +++ |. | +|+.|....++++++..++|.+.
T Consensus 121 Vlachydsk~~p~----~~---~-----------vgatdsAvpcamll~laq~l~~~ 159 (338)
T KOG3946|consen 121 VLACHYDSKIFPG----GM---F-----------VGATDSAVPCAMLLNLAQALDKI 159 (338)
T ss_pred eeecccccccCCC----cc---e-----------EeeccccccHHHHHHHHHHHHHH
Confidence 899999997 332 11 2 38999999999999999888764
No 76
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=96.64 E-value=0.0026 Score=54.46 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=30.0
Q ss_pred eCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEec
Q psy17305 125 KDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVT 166 (223)
Q Consensus 125 ~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~~ 166 (223)
.++++.|| +.|++.|+++++++++.+++.+.+ .++.+++
T Consensus 124 ~~~~i~gk-alDdR~g~~~lle~l~~l~~~~~~--~~v~~v~ 162 (292)
T PF05343_consen 124 GNGRIVGK-ALDDRAGCAVLLELLRELKEKELD--VDVYFVF 162 (292)
T ss_dssp TTTEEEET-THHHHHHHHHHHHHHHHHTTSS-S--SEEEEEE
T ss_pred CCCEEEEE-eCCchhHHHHHHHHHHHHhhcCCC--ceEEEEE
Confidence 35678888 589999999999999999987644 5555443
No 77
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=96.12 E-value=0.012 Score=52.73 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=38.1
Q ss_pred ccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305 95 KHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165 (223)
Q Consensus 95 ~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~ 165 (223)
.+.+++.+|+|++|.+ +|+.|+.+|++++|++.+.|+... ++.+|+++
T Consensus 208 ~~~~~~~a~~~s~~~~---------------------~GA~DNasGva~llEiAr~l~~~~--p~~~v~f~ 255 (435)
T COG2234 208 DSLGLLGAHIDSVPTG---------------------PGADDNASGVAALLELARVLKGNP--PKRTVRFV 255 (435)
T ss_pred CceeeecccccCCcCC---------------------CCcccccHHHHHHHHHHHHHhcCC--CCceEEEE
Confidence 4566777777776664 499999999999999999999876 66677655
No 78
>KOG2526|consensus
Probab=94.93 E-value=0.34 Score=43.35 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcC-C------CCCccEEEEEeccccCCCCCCCCCCCCCCce
Q psy17305 50 HYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLG-N------DKAKHTVLVYGHLDVQPAEKEDGWNTEPFVL 122 (223)
Q Consensus 50 ~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~-~------~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~ 122 (223)
+.+..-....|+.+..-.......+.- ...||.+++. + +...|+|++.+||||...-+ | +
T Consensus 165 ~~ll~Tasangy~iv~sg~sp~a~~s~----ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap---~----l-- 231 (555)
T KOG2526|consen 165 QHLLQTASANGYSIVSSGQSPEAPPSY----KILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAP---G----L-- 231 (555)
T ss_pred HHHHhhhccCcEEEEecCCCcccCCCC----ccceEEeecccccccccccccCCeEEEEEeccccccCC---C----C--
Confidence 444455556666654432221111111 1379999985 2 23579999999999985431 1 1
Q ss_pred eeeCCeEEecCCCCCchhHHHHHHHHHHHHHcc----CCCceeeEEec
Q psy17305 123 TLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTK----KNVPVNIKEVT 166 (223)
Q Consensus 123 ~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~----~~~~~~i~~~~ 166 (223)
..|+--+.+|+++.|+.++.|.+.- -..+.|+.|+.
T Consensus 232 --------svgADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~l 271 (555)
T KOG2526|consen 232 --------SVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFIL 271 (555)
T ss_pred --------CCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEEE
Confidence 2388888999999999998887743 12467888764
No 79
>KOG2276|consensus
Probab=94.60 E-value=0.015 Score=51.25 Aligned_cols=47 Identities=68% Similarity=1.131 Sum_probs=43.5
Q ss_pred EecccceeeccCcccCCCCcCCCCccceecccchhhHHHHHHHHHHh
Q psy17305 164 EVTGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISK 210 (223)
Q Consensus 164 ~~~g~~~~~~~~g~~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~ 210 (223)
.++|..++.++.|..++++||.|+..+-.|.+.|.+.+++++.++..
T Consensus 426 ~~~~~~V~llP~G~~dD~aHsqNEkl~i~N~~~G~k~l~ay~~el~~ 472 (473)
T KOG2276|consen 426 DITGKSVLLLPYGASDDGAHSQNEKLNITNYVEGTKVLAAYISELAQ 472 (473)
T ss_pred HHhCCCeEEecccccccchhhhcccccHHHHhhhHHHHHHHHHHHhc
Confidence 45678899999999999999999999999999999999999999865
No 80
>KOG2195|consensus
Probab=93.77 E-value=0.21 Score=47.65 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=47.6
Q ss_pred cEEEEEc-CCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHH---HHHHccCCC
Q psy17305 83 PVILGNL-GNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIE---AFQQTKKNV 158 (223)
Q Consensus 83 ~nl~a~~-~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~---~l~~~~~~~ 158 (223)
.||++.+ |+..+..-|++.+|.|..-. |+.|..+|.+.+++..+ .|++.|.+|
T Consensus 339 ~NIig~I~Gs~epD~~ViigahrDSw~~-----------------------Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP 395 (702)
T KOG2195|consen 339 QNIIGKIEGSEEPDRYVIIGAHRDSWTF-----------------------GAIDPNSGTALLLEIARALSKLKKRGWRP 395 (702)
T ss_pred eeEEEEEecCcCCCeEEEEecccccccc-----------------------CCcCCCccHHHHHHHHHHHHHHHHcCCCc
Confidence 6999999 44556778999999999643 78899999877766554 456788999
Q ss_pred ceeeEEec
Q psy17305 159 PVNIKEVT 166 (223)
Q Consensus 159 ~~~i~~~~ 166 (223)
.++|.|+.
T Consensus 396 ~RtI~F~s 403 (702)
T KOG2195|consen 396 RRTILFAS 403 (702)
T ss_pred cceEEEEE
Confidence 99998763
No 81
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=89.76 E-value=0.97 Score=37.45 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=39.9
Q ss_pred cEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHc-c--CCCceeeEEec
Q psy17305 96 HTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQT-K--KNVPVNIKEVT 166 (223)
Q Consensus 96 ~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~-~--~~~~~~i~~~~ 166 (223)
|.|++.+.||+.---. . -++|+...-+|+++.|+++++|.+. . -..+++|.|.+
T Consensus 1 ~iIlv~armDs~s~F~-----~------------~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~ 57 (234)
T PF05450_consen 1 PIILVVARMDSFSFFH-----D------------LSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAF 57 (234)
T ss_pred CEEEEEecccchhccc-----C------------CCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEE
Confidence 5799999999973310 0 0459999999999999999999876 1 23567777553
No 82
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=86.96 E-value=2 Score=37.82 Aligned_cols=49 Identities=18% Similarity=0.141 Sum_probs=38.0
Q ss_pred EEEEEcCCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCC
Q psy17305 84 VILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKN 157 (223)
Q Consensus 84 nl~a~~~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~ 157 (223)
|+++.-+. ..+++++.+|.|+=.. |..|+..|++++++++..|+..+..
T Consensus 180 ~~Ia~~~~--en~vv~i~AH~DHW~~-----------------------G~tDN~lg~~~AV~~~~~lr~~~~~ 228 (486)
T COG4882 180 NVIAVDGG--ENGVVLIGAHLDHWYT-----------------------GFTDNILGVAQAVETAGRLRGRGLA 228 (486)
T ss_pred EEEEecCC--CCCceEEeechhhhhh-----------------------cccchhhhHHHHHHHHHHHhhcCcc
Confidence 44444333 2468999999998554 7899999999999999999987753
No 83
>PRK09961 exoaminopeptidase; Provisional
Probab=83.92 E-value=1.5 Score=38.44 Aligned_cols=37 Identities=16% Similarity=0.354 Sum_probs=29.6
Q ss_pred eeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeE
Q psy17305 124 LKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163 (223)
Q Consensus 124 ~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~ 163 (223)
..++++.|| +.|++.|+++++++++.+++.+ ++.++.
T Consensus 155 ~~~~~i~gk-alDnR~g~~~lle~l~~l~~~~--~~~~v~ 191 (344)
T PRK09961 155 LPHQRVMGK-AFDDRLGCYLLVTLLRELHDAE--LPAEVW 191 (344)
T ss_pred ecCCEEEEe-echhhHhHHHHHHHHHHhhhcC--CCceEE
Confidence 367899997 5999999999999999997654 445553
No 84
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=81.09 E-value=33 Score=31.61 Aligned_cols=44 Identities=14% Similarity=0.066 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecC
Q psy17305 20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIG 69 (223)
Q Consensus 20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~ 69 (223)
.+-+.+.|+|++.|+.--.| ...++++.+.+++.|++++..+..
T Consensus 171 a~~~~~aRdL~n~P~n~~tP------~~~a~~a~~~~~~~g~~v~V~~~~ 214 (483)
T PRK00913 171 AEGVNLARDLVNEPPNILTP------AYLAERAKELAKEYGLEVEVLDEK 214 (483)
T ss_pred HHHHHHHHHhhCCChhhcCH------HHHHHHHHHHHHhcCCEEEEEeHH
Confidence 45667889999988755433 367888899999999998876643
No 85
>PTZ00412 leucyl aminopeptidase; Provisional
Probab=80.17 E-value=21 Score=33.33 Aligned_cols=42 Identities=10% Similarity=0.162 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEE-EEe
Q psy17305 20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVE-ICD 67 (223)
Q Consensus 20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~-~~~ 67 (223)
.+-+.+.|+|++.|..--.| ...++.+.+.+.+.|++++ ..+
T Consensus 212 a~~vn~ARdLvn~P~N~ltP------~~~Ae~a~~~~~~~g~~v~~Vl~ 254 (569)
T PTZ00412 212 GHCVNEARNLGNLREDEGVP------QFYAEWIKKELAPLGIKVRKVLR 254 (569)
T ss_pred HHHHHHHHHhccCChhhcCH------HHHHHHHHHHHhhcCCEEEEEEc
Confidence 34567889999988654433 3577888887888899886 443
No 86
>PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The 2 zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3KZW_L 3KQX_C 3KQZ_L 3KR4_I 3KR5_J 3T8W_C 3H8F_D 3H8G_A 3H8E_B 3IJ3_A ....
Probab=79.24 E-value=13 Score=32.10 Aligned_cols=119 Identities=22% Similarity=0.288 Sum_probs=68.3
Q ss_pred HHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCC---CCC------CCCCCCCCCcEEEEEcC-CC-
Q psy17305 24 ENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGN---QTL------PNGESIKYPPVILGNLG-ND- 92 (223)
Q Consensus 24 ~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~---~~~------~~g~~~~~~~nl~a~~~-~~- 92 (223)
.+.|+|++.|..--.| ...++++++.++..|++++..+... ..+ ..|... .|..++.++. ..
T Consensus 2 n~aRdL~n~P~n~~~P------~~~a~~~~~~~~~~~v~v~v~~~~~l~~~gmg~llaVg~gS~~-~P~lv~l~Y~g~~~ 74 (311)
T PF00883_consen 2 NLARDLVNTPPNILTP------ETFAEYAKELAKKYGVKVEVLDEKELEKLGMGGLLAVGRGSRH-PPRLVVLEYKGNGG 74 (311)
T ss_dssp HHHHHHHHS-TTTSSH------HHHHHHHHHHHHHCTEEEEEEEHHHHHHTT-HHHHHHHTTSSS---EEEEEEEETSTS
T ss_pred hHHHhhhCCChhhcCH------HHHHHHHHHHHhhcCCEEEEEeHHHHHHcCCccEeeecccCCC-CCEEEEEEECCCCC
Confidence 4678899888655432 4788999999999999888766431 111 122211 1245555563 33
Q ss_pred CCccEEEEEe---ccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305 93 KAKHTVLVYG---HLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165 (223)
Q Consensus 93 ~~~~~ill~~---H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~ 165 (223)
...++|.|.| =+||=-.. --|- +.|. +---+++|.++++.+++++.+.+ +|.+|..+
T Consensus 75 ~~~~~i~LVGKGiTFDtGG~~------lKp~------~~M~--~Mk~DM~GAAaV~ga~~aia~lk--~~vnV~~~ 134 (311)
T PF00883_consen 75 KSKKPIALVGKGITFDTGGLS------LKPS------GGME--GMKYDMGGAAAVLGAMRAIAKLK--LPVNVVAV 134 (311)
T ss_dssp TTSEEEEEEEEEEEEEE-TTS------SSCS------TTGG--GGGGGGHHHHHHHHHHHHHHHCT---SSEEEEE
T ss_pred CCCccEEEEcceEEEecCCcc------CCCC------cchh--hcccCcchHHHHHHHHHHHHHcC--CCceEEEE
Confidence 3567888888 46662110 0010 0000 22345678888999999999865 55677644
No 87
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=77.93 E-value=1.9 Score=30.43 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=28.5
Q ss_pred ccCCCCcCCCCccceecccchhhHHHHHHHHHHhhhh
Q psy17305 177 ASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVTQ 213 (223)
Q Consensus 177 ~~~~~ahag~~~~~g~~ai~g~~~~a~~~~~l~~l~~ 213 (223)
..+.++|++ .|..|+||+. .+++++..|..+..
T Consensus 13 ~~G~~~H~s-~~~~g~nai~---~~~~~l~~l~~~~~ 45 (111)
T PF07687_consen 13 ITGKSGHSS-RPEKGVNAIE---AAARFLNALEELEF 45 (111)
T ss_dssp EESBSEETT-SGGGSBCHHH---HHHHHHHHHHHTTC
T ss_pred EEeeccCCC-CccCccCHHH---HHHHHHHHHHHhhc
Confidence 456789999 9999999999 99999999988743
No 88
>PRK02813 putative aminopeptidase 2; Provisional
Probab=76.49 E-value=32 Score=31.13 Aligned_cols=76 Identities=18% Similarity=0.240 Sum_probs=41.3
Q ss_pred HHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCC---CCCcEEEEEc-CCCC--Cc
Q psy17305 22 FIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESI---KYPPVILGNL-GNDK--AK 95 (223)
Q Consensus 22 ~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~---~~~~nl~a~~-~~~~--~~ 95 (223)
+.+.|.++++ .|+|. ..+.+++++.|++.||.- ..+...-.+.+|..+ .....|+|.. |..+ ..
T Consensus 7 ~~~~~~~fl~-~s~t~--------~hav~~~~~~L~~~Gf~~-l~e~~~w~l~~g~kyy~~r~~~sliAf~vg~~~~~~~ 76 (428)
T PRK02813 7 FAQDLLDFID-ASPSP--------FHAVANVAQRLEAAGFTE-LDETDAWKLEPGGRYYVVRNGSSLIAFRVGEGAPAET 76 (428)
T ss_pred HHHHHHHHHH-cCCCH--------HHHHHHHHHHHHHcCCee-ccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCC
Confidence 3445555555 23332 468899999999999942 111111111111110 1114777776 4432 13
Q ss_pred cEEEEEeccccC
Q psy17305 96 HTVLVYGHLDVQ 107 (223)
Q Consensus 96 ~~ill~~H~DtV 107 (223)
.-.++.+|.|.-
T Consensus 77 g~~iv~aH~DsP 88 (428)
T PRK02813 77 GFRIVGAHTDSP 88 (428)
T ss_pred CeEEEEEeccCC
Confidence 457889999985
No 89
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=73.58 E-value=22 Score=32.59 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=40.9
Q ss_pred HHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCC---CCCcEEEEEc-CCC---CC
Q psy17305 22 FIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESI---KYPPVILGNL-GND---KA 94 (223)
Q Consensus 22 ~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~---~~~~nl~a~~-~~~---~~ 94 (223)
+.+.|.++++ .|+|. ..+.+++.+.|++.||.- ..+...-.+..|..| .....|+|.. |.. ..
T Consensus 8 ~~~~~~~Fl~-~s~t~--------~hav~~~~~~L~~~GF~~-l~e~~~w~l~~g~kyyv~r~~ssl~Af~vg~~~~~~~ 77 (465)
T PTZ00371 8 LAQEFLNFIN-KTGSP--------FHAVQELKERLKKSGFKQ-LNEGENWKLEKGGKYYLTRNNSTIVAFTVGKKFDAPN 77 (465)
T ss_pred HHHHHHHHHH-cCCCH--------HHHHHHHHHHHHHCcCEE-ccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCC
Confidence 3445555555 24432 468899999999999842 111111011111100 1114777776 444 22
Q ss_pred ccEEEEEeccccC
Q psy17305 95 KHTVLVYGHLDVQ 107 (223)
Q Consensus 95 ~~~ill~~H~DtV 107 (223)
..-.++.+|.|.=
T Consensus 78 ~g~~ivgaHtDsP 90 (465)
T PTZ00371 78 GGFKIVGAHTDSP 90 (465)
T ss_pred CCeEEEEEeccCC
Confidence 3457889999983
No 90
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=65.86 E-value=75 Score=29.34 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcC-CcEEEEec
Q psy17305 20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLG-ATVEICDI 68 (223)
Q Consensus 20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G-~~~~~~~~ 68 (223)
-+.+.+.|+|++.|..--.|. ..++. .+.|.+.+ ++++..+-
T Consensus 167 ~~~v~~aRdLvN~P~n~l~P~------~la~~-a~~la~~~~v~veVl~~ 209 (485)
T COG0260 167 AEGVNLARDLVNTPANILTPE------ELAER-AELLAKLGGVKVEVLDE 209 (485)
T ss_pred HHHHHHHHHHhhCCcccCCHH------HHHHH-HHHHhhcCCceEEEecH
Confidence 356789999999987655432 45555 56666555 67666543
No 91
>KOG2597|consensus
Probab=60.97 E-value=1.4e+02 Score=27.71 Aligned_cols=124 Identities=19% Similarity=0.141 Sum_probs=69.1
Q ss_pred HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCCCcEEEEEcCCCCCccEEE
Q psy17305 20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL 99 (223)
Q Consensus 20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~nl~a~~~~~~~~~~il 99 (223)
.+...+-++|+..|..--. -...++++.+++...|..++......... .+- +.+++.-......|.++
T Consensus 189 ~~~~~lar~l~d~PaN~Mt------p~~fae~a~~~~~~~~v~v~V~~~~~i~~-~~~-----~~~l~V~k~s~~pP~ll 256 (513)
T KOG2597|consen 189 AAAQNLARRLGDTPANRMT------PTQFAEEAVDVLCPLGVTVEVRDEEWIEE-QGM-----NSFLAVAKASCEPPRLL 256 (513)
T ss_pred HHHHHHHHHhccCChhhcC------HHHHHHHHHHhhcccCceEEEechHHHhh-ccc-----cceeeeccccCCCCEEE
Confidence 3455566777777654443 34789999999999998776654321100 010 23333322233456778
Q ss_pred EEeccccCCCCCCCCCCCCCCceeeeCCeEEecCC------------CCCchhHHHHHHHHHHHHHccCCCceeeEEe
Q psy17305 100 VYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGA------------SDDKGPVLGWLHAIEAFQQTKKNVPVNIKEV 165 (223)
Q Consensus 100 l~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~------------~D~K~gv~~~l~al~~l~~~~~~~~~~i~~~ 165 (223)
.++|..+-|.. .|+-. +..|.-|--|- .=+++|.|+++.+++++...++ |.++..+
T Consensus 257 ~lsY~g~~~~~-------~~i~l-vGKGvtfDsGGl~iK~~~~M~~mr~dm~GAA~v~~~~~a~~~l~~--~in~~~v 324 (513)
T KOG2597|consen 257 ELSYKGTSGAD-------KTILL-VGKGVTFDSGGLSIKPKTGMDGMRRDMGGAAVVLGAFRAAAQLSL--PINVHAV 324 (513)
T ss_pred EEEEcCCCCCc-------ceEEE-EecceEEecCccccccCCChhhhhhhccccHHHHHHHHHHHhcCC--CCceEEE
Confidence 88887775432 22211 11222222221 1235677888999998888764 4666544
No 92
>PRK02256 putative aminopeptidase 1; Provisional
Probab=54.41 E-value=83 Score=28.89 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcCCcE-EEEecCCCCCCCCCCC---CCCcEEEEEc-CCCC-CccEEEEEeccccC
Q psy17305 46 INMIHYFADKLKQLGATV-EICDIGNQTLPNGESI---KYPPVILGNL-GNDK-AKHTVLVYGHLDVQ 107 (223)
Q Consensus 46 ~~~~~~l~~~l~~~G~~~-~~~~~~~~~~~~g~~~---~~~~nl~a~~-~~~~-~~~~ill~~H~DtV 107 (223)
..+.+++++.|++.||.- ...+ .+.+|..| .....|+|+. +..+ ...-.++.+|.|.=
T Consensus 42 ~Hav~~~~~~L~~~GF~el~e~~----~l~~g~kyy~~r~~ssliAf~ig~~~~~~g~~iv~aHtDsP 105 (462)
T PRK02256 42 REAVKEIIELAEEKGFINLEEII----GLKPGDKVYAVNRGKSVALAVIGKEPLEEGLNIIGAHIDSP 105 (462)
T ss_pred HHHHHHHHHHHHHcCCeeccccc----ccCCCCEEEEEcCCCEEEEEEeCCCCCCCceEEEEEecCCC
Confidence 468899999999999942 2211 11111111 1114777775 4432 22346889999983
No 93
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=44.85 E-value=22 Score=27.78 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=28.4
Q ss_pred HhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecC
Q psy17305 28 EAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIG 69 (223)
Q Consensus 28 ~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~ 69 (223)
.||...|..+ +..++++++...|++.|.+++..+..
T Consensus 3 ~LIlYstr~G------qT~kIA~~iA~~L~e~g~qvdi~dl~ 38 (175)
T COG4635 3 TLILYSTRDG------QTRKIAEYIASHLRESGIQVDIQDLH 38 (175)
T ss_pred eEEEEecCCC------cHHHHHHHHHHHhhhcCCeeeeeehh
Confidence 3455555444 67899999999999999999988764
No 94
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=44.18 E-value=81 Score=20.39 Aligned_cols=51 Identities=20% Similarity=0.318 Sum_probs=27.7
Q ss_pred CcchHHHHHHHHHHHHhcHHH-----HHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCc
Q psy17305 1 MASSAEYLAEISEYVESNKNK-----FIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGAT 62 (223)
Q Consensus 1 ~~~~~~~~~~~~~~i~~~~~~-----~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~ 62 (223)
|..|+...++++++|....++ -+..+.+-+.+.|++ .+....+.|++.|+-
T Consensus 1 M~~LT~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~S~~-----------tv~~~L~~Le~kG~I 56 (65)
T PF01726_consen 1 MKELTERQKEVLEFIREYIEENGYPPTVREIAEALGLKSTS-----------TVQRHLKALERKGYI 56 (65)
T ss_dssp -----HHHHHHHHHHHHHHHHHSS---HHHHHHHHTSSSHH-----------HHHHHHHHHHHTTSE
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCChH-----------HHHHHHHHHHHCcCc
Confidence 666777777788887765443 555666666666543 234444566777873
No 95
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=42.65 E-value=2.7e+02 Score=25.57 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEec
Q psy17305 20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDI 68 (223)
Q Consensus 20 ~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~ 68 (223)
.+-+.+.|+|++.|..--.| ...++++++.+++.|++++..+.
T Consensus 154 a~~~~~aRdL~n~P~n~~tP------~~~a~~a~~l~~~~g~~v~V~~~ 196 (468)
T cd00433 154 AEGVNLARDLVNTPANDLTP------TYLAEEAKELAKELGVKVEVLDE 196 (468)
T ss_pred HHHHHHHHHhhcCCcccCCH------HHHHHHHHHHHHhcCCEEEEEcH
Confidence 45667889999988654433 36889999999999999988764
No 96
>COG1362 LAP4 Aspartyl aminopeptidase [Amino acid transport and metabolism]
Probab=40.66 E-value=1.1e+02 Score=27.63 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCCcE-E---EEecCC-CCC---CCCCCCCCCcEEEEEc-CCC--CCccEEEEEeccccC
Q psy17305 46 INMIHYFADKLKQLGATV-E---ICDIGN-QTL---PNGESIKYPPVILGNL-GND--KAKHTVLVYGHLDVQ 107 (223)
Q Consensus 46 ~~~~~~l~~~l~~~G~~~-~---~~~~~~-~~~---~~g~~~~~~~nl~a~~-~~~--~~~~~ill~~H~DtV 107 (223)
..+..++++.|.+.||.- + ...... .++ ..| .+|+|+. +.+ ...+--++.+|.|.=
T Consensus 24 yh~v~~i~~~L~~~Gf~~l~e~~~w~~~~ggkyf~~r~g------ssliAf~ig~~~~~~~gf~IigaHtDSP 90 (437)
T COG1362 24 YHVVANIAERLLKAGFRELEEKDAWKDKPGGKYFVTRNG------SSLIAFIIGKKWKLESGFRIIGAHTDSP 90 (437)
T ss_pred HHHHHHHHHHHHHcCchhhhhhhcccccCCCeEEEEcCC------ceEEEEEecCCCCCCCCeEEEEeecCCC
Confidence 467889999999999842 2 111111 111 122 4788886 544 345567888999983
No 97
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=32.83 E-value=1.3e+02 Score=26.93 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=35.2
Q ss_pred EEEEEc--CCCCCccEEEEEeccccCCCCCCCCCCCCCCceeeeCCeEEecCCCCCchhHHHHHHHHHHHHHccCCCcee
Q psy17305 84 VILGNL--GNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVN 161 (223)
Q Consensus 84 nl~a~~--~~~~~~~~ill~~H~DtVp~~~~~~w~~~P~~~~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~~~~~~~~~ 161 (223)
.-++.+ ++ .....|+|.+|+.+ |. -+.|+.+|++.+++..+.|++.... .+
T Consensus 117 L~ygE~~ipG-~s~~EillsthiCH-Ps-----------------------mANdnLSG~~v~~~La~~L~~~~~r--yt 169 (386)
T PF09940_consen 117 LTYGEFVIPG-ESDEEILLSTHICH-PS-----------------------MANDNLSGPAVLTFLAKWLKQLPNR--YT 169 (386)
T ss_dssp EEEEEEEE---SSS-EEEEEEE-----S------------------------TTTTHHHHHHHHHHHHHHTTS--S--SE
T ss_pred eeEEEEEecC-CCCCeEEEEEeccC-cc-----------------------cccccccHHHHHHHHHHHHhcCCcC--ce
Confidence 555554 33 34679999999987 22 4799999999999999999887654 45
Q ss_pred eEEec
Q psy17305 162 IKEVT 166 (223)
Q Consensus 162 i~~~~ 166 (223)
.+|++
T Consensus 170 YRflf 174 (386)
T PF09940_consen 170 YRFLF 174 (386)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55443
No 98
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=30.98 E-value=40 Score=29.86 Aligned_cols=33 Identities=6% Similarity=0.131 Sum_probs=27.5
Q ss_pred ccCCCCcCCCCcc-ceecccchhhHHHHHHHHHHhhh
Q psy17305 177 ASDDGAHSQNEKI-DVRNYIEGTKLLAAYLYEISKVT 212 (223)
Q Consensus 177 ~~~~~ahag~~~~-~g~~ai~g~~~~a~~~~~l~~l~ 212 (223)
+.+.++|++..|. .|.||+. .+++.+..|+.+.
T Consensus 214 v~G~~aHa~~~p~~~g~nAi~---~aa~~i~~l~~l~ 247 (401)
T TIGR01879 214 LNGESNHAGTTPMSLRRDPLV---AASRIIHQVEEKA 247 (401)
T ss_pred EEEECCCCCCCCcccccCHHH---HHHHHHHHHHHHH
Confidence 3466999998885 6899999 9999999988774
No 99
>PF09211 DUF1958: Domain of unknown function (DUF1958); InterPro: IPR015294 Penicillin-binding proteins are beta-lactam antibiotic-sensitive bacterial enzymes required for the growth and maintenance of the peptidoglycan layer of the bacterial cell wall that protects the cell from osmotic stress. Penicillin-binding protein 4 (PBP4) functions as a transpeptidase, and belongs to MEROPS peptidase family S11 (clan SE). PBP4 acts co-operatively with PBP2 in staphylococcal cell wall biosynthesis and susceptibility to antimicrobial agents []. This entry represents the C-terminal domain PBP4.; PDB: 1TVF_A 3HUN_A 3HUM_B.
Probab=26.03 E-value=37 Score=22.21 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=12.9
Q ss_pred cccCCCCCCCCCCCCCCceeeeCCeEE
Q psy17305 104 LDVQPAEKEDGWNTEPFVLTLKDEKLY 130 (223)
Q Consensus 104 ~DtVp~~~~~~w~~~P~~~~~~~~~ly 130 (223)
+||||-+ ..|+...+.+|.++
T Consensus 24 Yd~VpK~------~~~~~~~v~dg~v~ 44 (65)
T PF09211_consen 24 YDVVPKG------KKPYKLKVKDGKVH 44 (65)
T ss_dssp EEEEETT--------GSEEEEETTEEE
T ss_pred hhhccCC------CccceEEEeCCEEE
Confidence 6888876 34566667777654
No 100
>PRK13916 plasmid segregation protein ParR; Provisional
Probab=25.95 E-value=2e+02 Score=19.86 Aligned_cols=41 Identities=5% Similarity=0.154 Sum_probs=30.7
Q ss_pred HHhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCc
Q psy17305 15 VESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGAT 62 (223)
Q Consensus 15 i~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~ 62 (223)
+.-+++.+-++|.-|++.|..+.. .-+.+.|.++.++.|+.
T Consensus 10 L~i~r~~~~~iF~FL~~~P~GT~~-------~~iR~~L~rYI~~~G~~ 50 (97)
T PRK13916 10 LKIKKEDYPQIFDFLENVPRGTKT-------AHIREALRRYIEEIGEN 50 (97)
T ss_pred HHhcccccHHHHHHHHHCCCCCcc-------HHHHHHHHHHHHhcCCC
Confidence 334456777888888999887652 35778899999999985
No 101
>PF02127 Peptidase_M18: Aminopeptidase I zinc metalloprotease (M18); InterPro: IPR001948 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M18, (clan MH). The proteins have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal aminoacid, usually neutral or hydrophobic, from a polypeptide []. The type example is aminopeptidase I from Saccharomyces cerevisiae (Baker's yeast), the sequence of which has been deduced, and the mature protein shown to consist of 469 amino acids []. A 45-residue presequence contains both positively- and negatively-charged and hydrophobic residues, which could be arranged in an N-terminal amphiphilic alpha-helix []. The presequence differs from signal sequences that direct proteins across bacterial plasma membranes and endoplasmic reticulum or into mitochondria. It is unclear how this unique presequence targets aminopeptidase I to yeast vacuoles, and how this sorting utilises classical protein secretory pathways [].; GO: 0004177 aminopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1Y7E_A 2GLJ_R 4DYO_A 2IJZ_B 3VAT_A 3VAR_A 2GLF_B.
Probab=25.63 E-value=91 Score=28.35 Aligned_cols=61 Identities=16% Similarity=0.233 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCC---CCCcEEEEEc-CCC--CCccEEEEEecccc
Q psy17305 45 TINMIHYFADKLKQLGATVEICDIGNQTLPNGESI---KYPPVILGNL-GND--KAKHTVLVYGHLDV 106 (223)
Q Consensus 45 ~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~---~~~~nl~a~~-~~~--~~~~~ill~~H~Dt 106 (223)
...+.+++++.|++.||. +..+...-.+.+|..+ .....++|.. +.. ....-.++.+|.|.
T Consensus 8 ~~Hav~~~~~~L~~~GF~-eL~e~~~W~l~~ggkyy~~r~~ssliAF~vg~~~~~~~G~~ivgaHtDS 74 (432)
T PF02127_consen 8 PFHAVANAKERLEKAGFT-ELDETEKWDLKPGGKYYVTRNGSSLIAFAVGGKFPPGNGFRIVGAHTDS 74 (432)
T ss_dssp HHHHHHHHHHHHHHTTHE-ESTTTSSTT--TTSEEEEEETTTEEEEEEEETTS-GCG-EEEEEEE---
T ss_pred HHHHHHHHHHHHHHcCCe-EcccccccCCCCCCEEEEEeCCCEEEEEEeCCcCCcccceEEEEEecCC
Confidence 456889999999999984 2222211111122111 1124677765 433 22345688999998
No 102
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=24.34 E-value=1.3e+02 Score=26.50 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=38.7
Q ss_pred HhcHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHHHHHHhcCCcEEEEecC
Q psy17305 16 ESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIG 69 (223)
Q Consensus 16 ~~~~~~~i~~l~~lv~i~s~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~ 69 (223)
+.+..++++..++...|+..+.+. -.+++.+-++++++++|..++.-+.+
T Consensus 295 ~~k~~k~~q~a~rV~gi~~g~~~e----~i~~~I~ktr~ff~slGv~trlsdyg 344 (384)
T COG1979 295 DQKRAKLLQYAERVWGITEGSDDE----IIDEAIAKTREFFESLGVPTRLSDYG 344 (384)
T ss_pred hhcHHHHHHHHHHHcCCCCCChHH----HHHHHHHHHHHHHHHcCCccchhhcC
Confidence 345678999999999998765421 35678889999999999988776554
No 103
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=21.82 E-value=1.5e+02 Score=19.91 Aligned_cols=29 Identities=14% Similarity=0.246 Sum_probs=21.2
Q ss_pred eeeCCeEEecCCCCCchhHHHHHHHHHHHHH
Q psy17305 123 TLKDEKLYGRGASDDKGPVLGWLHAIEAFQQ 153 (223)
Q Consensus 123 ~~~~~~lyGrG~~D~K~gv~~~l~al~~l~~ 153 (223)
.-...++||.|.+... -.+...|+..|.+
T Consensus 8 ~~~~~~l~a~G~~~~~--~~A~~~A~~~la~ 36 (92)
T PF02169_consen 8 PPSQQYLYAVGSGSSR--EQAKQDALANLAE 36 (92)
T ss_pred CCCccEEEEEEcccCh--HHHHHHHHHHHHH
Confidence 3467889999998777 5556667766665
No 104
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=21.36 E-value=1.7e+02 Score=20.87 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEecC
Q psy17305 44 QTINMIHYFADKLKQLGATVEICDIG 69 (223)
Q Consensus 44 ~~~~~~~~l~~~l~~~G~~~~~~~~~ 69 (223)
+..++|+.|+++|.+.|++-+.....
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk~i~l~ 45 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGKIIRLY 45 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCceEEEEE
Confidence 68899999999999999976655543
No 105
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=20.87 E-value=81 Score=28.49 Aligned_cols=54 Identities=19% Similarity=0.135 Sum_probs=36.7
Q ss_pred ccEEEEEeccccCCCCCC-CC--CCCCCCceeeeCCeEE-ecCCCCCchhHHHHHHHHHH
Q psy17305 95 KHTVLVYGHLDVQPAEKE-DG--WNTEPFVLTLKDEKLY-GRGASDDKGPVLGWLHAIEA 150 (223)
Q Consensus 95 ~~~ill~~H~DtVp~~~~-~~--w~~~P~~~~~~~~~ly-GrG~~D~K~gv~~~l~al~~ 150 (223)
...+.|-||+|.||.-.. .. ...+|..+.++++++- .+|+ |+ .+++..++.++-
T Consensus 61 ~~~~~L~a~~d~V~~i~~~sh~Dt~~d~~~~~v~~~~l~~~~Ga-d~-i~~~~~~a~L~~ 118 (414)
T COG2195 61 YVPAVLQAHLDMVPEIGFISHHDTVPDPIGPNVNPQILKATLGA-DN-IGLAIGLAVLSP 118 (414)
T ss_pred eeeEEeeccccccccccccccccccccccccccCCceeeeccCc-ch-hhhhhHHhhcCc
Confidence 457889999999985322 11 3346778888999998 6665 44 666666666543
Done!