RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17305
(223 letters)
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase,
protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin,
L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus
musculus} PDB: 2zof_A*
Length = 479
Score = 217 bits (555), Expect = 8e-69
Identities = 76/161 (47%), Positives = 117/161 (72%)
Query: 3 SSAEYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGAT 62
+S L + +Y++ N++++++ L E VAI+SVS+ + R + M+ A +++LG +
Sbjct: 3 NSMSALKAVFQYIDENQDRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADVQRLGGS 62
Query: 63 VEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVL 122
VE+ DIG Q LP+G I PP++LG LG+D K TV +YGHLDVQPA EDGW++EPF L
Sbjct: 63 VELVDIGKQKLPDGSEIPLPPILLGKLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTL 122
Query: 123 TLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
++ KLYGRG++DDKGPV GW++A+EA+Q+T + +PVN++
Sbjct: 123 VEREGKLYGRGSTDDKGPVAGWMNALEAYQKTGQEIPVNLR 163
Score = 69.3 bits (170), Expect = 5e-14
Identities = 35/49 (71%), Positives = 46/49 (93%)
Query: 163 KEVTGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV 211
+E TGKNV+LLP+G++DDGAHSQNEK++ NYIEGTK+LAAYLYE+S++
Sbjct: 429 QEATGKNVMLLPVGSADDGAHSQNEKLNRLNYIEGTKMLAAYLYEVSQL 477
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1,
structural genomics, structu genomics consortium, SGC,
metallopeptidase M20 family; 2.26A {Homo sapiens}
Length = 485
Score = 214 bits (548), Expect = 1e-67
Identities = 79/164 (48%), Positives = 115/164 (70%), Gaps = 2/164 (1%)
Query: 2 ASSAEYLAEISEYVESNKNKFIENLKEAVAIESVS--SSVQHRPQTINMIHYFADKLKQL 59
+ L ++ +Y++ ++++F++ LKE VAIES S + R + M+ AD L++L
Sbjct: 7 SPPPALLEKVFQYIDLHQDEFVQTLKEWVAIESDSVQPVPRFRQELFRMMAVAADTLQRL 66
Query: 60 GATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEP 119
GA V D+G Q LP+G+S+ PPVIL LG+D K TV YGHLDVQPA++ DGW T+P
Sbjct: 67 GARVASVDMGPQQLPDGQSLPIPPVILAELGSDPTKGTVCFYGHLDVQPADRGDGWLTDP 126
Query: 120 FVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
+VLT D KLYGRGA+D+KGPVL W++A+ AF+ ++++PVNIK
Sbjct: 127 YVLTEVDGKLYGRGATDNKGPVLAWINAVSAFRALEQDLPVNIK 170
Score = 69.3 bits (170), Expect = 6e-14
Identities = 28/49 (57%), Positives = 40/49 (81%)
Query: 163 KEVTGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV 211
+E+ K+V+L+P+GA DDG HSQNEKI+ NYIEGTKL AA+ E++++
Sbjct: 436 QEIVHKSVVLIPLGAVDDGEHSQNEKINRWNYIEGTKLFAAFFLEMAQL 484
>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo
protein, MCSG, structural GENO PSI-2, protein structure
initiative; HET: BGC; 1.90A {Streptococcus pneumoniae}
Length = 481
Score = 184 bits (469), Expect = 4e-56
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 15/164 (9%)
Query: 1 MASSAEYLAEISEYV-ESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQL 59
M +E +I ++ + + E L+ ++ +SV + + + +Y + K++
Sbjct: 25 MVFPSE-QEQIEKFEKDHVAQHYFEVLRTLISKKSVFA---QQVGLKEVANYLGEIFKRV 80
Query: 60 GATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEP 119
GA VEI + P V+ + T++ Y H D PA+ + W +P
Sbjct: 81 GAEVEIDESY----------TAPFVMAHFKSSRPDAKTLIFYNHYDTVPADGDQVWTEDP 130
Query: 120 FVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
F L++++ +YGRG DDKG + L A+ + Q ++PVNI
Sbjct: 131 FTLSVRNGFMYGRGVDDDKGHITARLSALRKYMQHHDDLPVNIS 174
Score = 68.1 bits (167), Expect = 1e-13
Identities = 5/48 (10%), Positives = 19/48 (39%)
Query: 160 VNIKEVTGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYE 207
+ + ++ +G ++ H +E + + +Y +L+ +
Sbjct: 432 HTVFDALEVPMVAFGLGNANSRDHGGDENVRIADYYTHIELVEELIRS 479
>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20
familiy, phosphorylase/hydrolase-L structural genomics;
HET: MSE; 1.50A {Legionella pneumophila subsp}
Length = 472
Score = 163 bits (414), Expect = 4e-48
Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 20/164 (12%)
Query: 8 LAEISEYV-ESNKNKFIENLKEAVAIESVSSSVQHRPQTIN----MIHYFADKLKQL--- 59
+ +Y+ + + + + +L + + I + S + + +++ A+ K
Sbjct: 5 PQGLYDYICQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPK 64
Query: 60 GATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEP 119
G T+EI + N+ P++ + TVL+YGHLD QP + P
Sbjct: 65 GMTLEIVRLKNR----------TPLLFMEIPGQIDD-TVLLYGHLDKQPEMSGWSDDLHP 113
Query: 120 FVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
+ LK+ LYGRG +DD L AI A +Q
Sbjct: 114 WKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGL-PYPRCI 156
Score = 69.3 bits (170), Expect = 5e-14
Identities = 8/48 (16%), Positives = 19/48 (39%)
Query: 163 KEVTGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISK 210
++ ++ + AH NE + + + T ++ LY S+
Sbjct: 423 EQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQ 470
>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase,
metal-bindin metalloprotease, protease; 2.30A
{Staphylococcus aureus} PDB: 3ki9_A 3khz_A
Length = 492
Score = 131 bits (330), Expect = 5e-36
Identities = 38/164 (23%), Positives = 64/164 (39%), Gaps = 24/164 (14%)
Query: 10 EISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQT------INMIHYFADKLKQLGATV 63
E V+ +++ I +LK +AIESV + + Y + + G T
Sbjct: 24 MWKEKVQQYEDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTT 83
Query: 64 EICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLT 123
D I G + K + + H+DV PA DGW++ PF
Sbjct: 84 HDVD----------------HIAGRIEAGKGNDVLGILCHVDVVPAG--DGWDSNPFEPV 125
Query: 124 LKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTG 167
+ ++ + RG DDKGP + +AI+ + + I + G
Sbjct: 126 VTEDAIIARGTLDDKGPTIAAYYAIKILEDMNVDWKKRIHMIIG 169
Score = 44.3 bits (104), Expect = 2e-05
Identities = 9/68 (13%), Positives = 17/68 (25%), Gaps = 19/68 (27%)
Query: 162 IKEVTGKNVLLLPMGAS-------------------DDGAHSQNEKIDVRNYIEGTKLLA 202
+ T +G +D H +NE I + T +
Sbjct: 423 YRNQTNDMTEPYTIGGGTYARNLDKGVAFGAMFSDSEDLMHQKNEYITKKQLFNATSIYL 482
Query: 203 AYLYEISK 210
+Y +
Sbjct: 483 EAIYSLCV 490
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP:
c.56.5.4 d.58.19.1
Length = 470
Score = 116 bits (293), Expect = 8e-31
Identities = 36/165 (21%), Positives = 67/165 (40%), Gaps = 25/165 (15%)
Query: 10 EISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQ------TINMIHYFADKLKQLGATV 63
E E+ K+ +++L+E +AI+S + ++ + F K+ G
Sbjct: 4 NFKELAEAKKDAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDGFDT 63
Query: 64 EICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLT 123
E G + + + GH+DV PA +GW +PF +
Sbjct: 64 ENFA----------------NYAGRVNFGAGDKRLGIIGHMDVVPAG--EGWTRDPFKME 105
Query: 124 L-KDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTG 167
+ ++ ++YGRG++DDKGP L + + ++ I V G
Sbjct: 106 IDEEGRIYGRGSADDKGPSLTAYYGMLLLKEAGFKPKKKIDFVLG 150
Score = 30.7 bits (69), Expect = 0.36
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 178 SDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISK 210
H+ NE + + + I + A +YE++K
Sbjct: 434 GPMVMHAANEFMMLDDLILSIAIYAEAIYELTK 466
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A
family, amino-acid biosynthesis, metallopeptidase; 1.90A
{Rhodopseudomonas palustris}
Length = 433
Score = 100 bits (252), Expect = 4e-25
Identities = 31/170 (18%), Positives = 62/170 (36%), Gaps = 14/170 (8%)
Query: 1 MASSAEYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLG 60
+ S + V+ N N + L+ V SV + + A + G
Sbjct: 7 LTKSDAITQSLRAAVDRNFNDQVAFLQRMVQFRSVR------GEEAPQQEWLAQQFADRG 60
Query: 61 ATVEICDIGNQTLPNGESIKYP--------PVILGNLGNDKAKHTVLVYGHLDVQPAEKE 112
V+ + + + + ++ +D ++++ GH+DV P
Sbjct: 61 YKVDTFSLADVDIASHPKAAPMDTIDPAGSMQVVATADSDGKGRSLILQGHIDVVPEGPV 120
Query: 113 DGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNI 162
D W+ P+ ++D + GRGA D KG V + A++A + +
Sbjct: 121 DLWSDPPYEAKVRDGWMIGRGAQDMKGGVSAMIFALDAIRTAGYAPDARV 170
Score = 27.3 bits (61), Expect = 4.4
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 176 GASDDGAHSQNEKIDVRNYIEGTKLLAAYLYE 207
G G H+ +E+ID+ + + T +A ++ E
Sbjct: 395 GPYGQGPHAFDERIDLESLRKTTLSIALFVAE 426
>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A
{Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1
Length = 393
Score = 87.4 bits (217), Expect = 2e-20
Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 16/161 (9%)
Query: 2 ASSAEYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGA 61
A + + + + + I+ L++ V IE+ + ++ +LK LG
Sbjct: 1 ALAQKRDNVLFQAATDEQPAVIKTLEKLVNIETGTG---DAEGIAAAGNFLEAELKNLGF 57
Query: 62 TVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFV 121
TV I+G + K +L+ H+D + PF
Sbjct: 58 TVTRSKSAGLV--------VGDNIVGKIKGRGGK-NLLLMSHMDTVYLK--GILAKAPF- 105
Query: 122 LTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNI 162
++ +K YG G +DDKG LH ++ ++ I
Sbjct: 106 -RVEGDKAYGPGIADDKGGNAVILHTLKLLKEYGVRDYGTI 145
Score = 33.8 bits (78), Expect = 0.033
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 175 MGASDDGAHSQ-NEKIDVRNYIEGTKLLAAYLYEISK 210
+G G HS E +D+ + A + ++
Sbjct: 355 LGLPGFGYHSDKAEYVDISAIPRRLYMAARLIMDLGA 391
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc
peptidase, peptidase family M20 structural genomics;
2.31A {Bacteroides thetaiotaomicron vpi-5482}
Length = 356
Score = 85.0 bits (211), Expect = 9e-20
Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 29/175 (16%)
Query: 15 VESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLP 74
+ + + + LK ++I S+S + + + ++ G
Sbjct: 6 IPTMTAEAVSLLKSLISIPSIS------REETQAADFLQNYIEAEGMQTGR--------- 50
Query: 75 NGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGA 134
K V + D K T+L+ H+D +GW +PF ++ KLYG G+
Sbjct: 51 -----KGNNVWCLSPMFDLKKPTILLNSHIDTVKPV--NGWRKDPFTPREENGKLYGLGS 103
Query: 135 SDDKGPVLGWLHAIEAFQQTKKNVPVNI-----KEVTGKN--VLLLPMGASDDGA 182
+D V+ L +T +N + +EV+GK +LP A
Sbjct: 104 NDAGASVVSLLQVFLQLCRTSQNYNLIYLASCEEEVSGKEGIESVLPGLPPVSFA 158
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed
mutagenesis, structure comparison, zinc, hydrolase;
1.40A {Homo sapiens} SCOP: c.56.5.4
Length = 198
Score = 81.3 bits (201), Expect = 2e-19
Identities = 29/153 (18%), Positives = 59/153 (38%), Gaps = 15/153 (9%)
Query: 11 ISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGN 70
++ ++ + ++ + I +V + + +F + +QLG + ++
Sbjct: 1 MTSKGPEEEHPSVTLFRQYLRIRTVQPKPDYGA----AVAFFEETARQLGLGCQKVEVAP 56
Query: 71 QTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFV-LTLKDEKL 129
Y +L G + ++L+ H DV P KE W+ +PF + +
Sbjct: 57 ---------GYVVTVLTWPGTNPTLSSILLNSHTDVVPVFKEH-WSHDPFEAFKDSEGYI 106
Query: 130 YGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNI 162
Y RGA D K + +L A+ + P I
Sbjct: 107 YARGAQDMKCVSIQYLEAVRRLKVEGHRFPRTI 139
>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic
metallopeptidase, peptidase family M20/M25/M40,
structural genomics; HET: MSE PGE PG4; 1.60A
{Desulfovibrio desulfuricans subsp}
Length = 364
Score = 76.5 bits (189), Expect = 1e-16
Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 22/135 (16%)
Query: 17 SNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNG 76
S+ +E + + S+ S Q + D Q G E D P+
Sbjct: 3 SSMQHIVELTSDLIRFPSMHS---RPEQISRCAGFIMDWCAQNGIHAERMDHDGI--PS- 56
Query: 77 ESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASD 136
++ +A +L+ H+DV + FV +++++LYGRGA+D
Sbjct: 57 --------VMVLPEKGRA--GLLLMAHIDVVD------AEDDLFVPRVENDRLYGRGAND 100
Query: 137 DKGPVLGWLHAIEAF 151
DK V L
Sbjct: 101 DKYAVALGLVMFRDR 115
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics,
unknown function; HET: MSE; 1.90A {Neisseria
meningitidis} SCOP: c.56.5.4 d.58.19.1
Length = 393
Score = 72.3 bits (178), Expect = 4e-15
Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 29/145 (20%)
Query: 23 IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYP 82
+E KE ++ SV+ P + A++L ++G E GN
Sbjct: 9 LELAKELISRPSVT------PDDRDCQKLMAERLHKIGFAAEEMHFGNTK---------- 52
Query: 83 PVILGNL----GNDKAKHTVLVY-GHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDD 137
N+ G K V+ + GH DV P + W++ PF +D +LYGRGA+D
Sbjct: 53 -----NIWLRRGT---KAPVVCFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADM 104
Query: 138 KGPVLGWLHAIEAFQQTKKNVPVNI 162
K + ++ A E F N +I
Sbjct: 105 KTSIACFVTACERFVAKHPNHQGSI 129
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding,
metallopeptidase, structural genomics, PSI-2, protein
struc initiative; 2.00A {Haemophilus influenzae} PDB:
3ic1_A
Length = 377
Score = 72.3 bits (178), Expect = 4e-15
Identities = 36/149 (24%), Positives = 58/149 (38%), Gaps = 29/149 (19%)
Query: 19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGES 78
K K + ++ + S+S P A++L++LG +E +
Sbjct: 2 KEKVVSLAQDLIRRPSIS------PNDEGCQQIIAERLEKLGFQIEWMPFNDTL------ 49
Query: 79 IKYPPVILGNL----GNDKAKHTVLVY-GHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRG 133
NL G + + GH DV P E+ W++ PF + D LYGRG
Sbjct: 50 ---------NLWAKHGT-SEPV--IAFAGHTDVVPTGDENQWSSPPFSAEIIDGMLYGRG 97
Query: 134 ASDDKGPVLGWLHAIEAFQQTKKNVPVNI 162
A+D KG + + A E + + N I
Sbjct: 98 AADMKGSLAAMIVAAEEYVKANPNHKGTI 126
>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A
{Xanthomonas campestris} PDB: 2f8h_A
Length = 369
Score = 71.1 bits (175), Expect = 9e-15
Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 23/131 (17%)
Query: 23 IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQ--LGATVEICDIGNQTLPNGESIK 80
+E+L+ V+ ++ + P+ I D L+ G VE+ D G+ +
Sbjct: 12 LEHLETLVSFDTRN-----PPRAIAAEGGIFDYLRAQLPGFQVEVIDHGDGAV------- 59
Query: 81 YPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGP 140
+L + L HLD P W+ +P V+ ++++ G G D KG
Sbjct: 60 -------SLYAVRGTPKYLFNVHLDTVPDS--PHWSADPHVMRRTEDRVIGLGVCDIKGA 110
Query: 141 VLGWLHAIEAF 151
+ A A
Sbjct: 111 AAALVAAANAG 121
>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural
genomics, joint center for structural JCSG; 2.97A
{Corynebacterium glutamicum}
Length = 369
Score = 69.6 bits (171), Expect = 3e-14
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 26/131 (19%)
Query: 23 IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYP 82
I + V I S S Q + D L+ L E ++
Sbjct: 16 IVLTQRLVDIPSPS------GQEKQIADEIEDALRNLNLPGV------------EVFRFN 57
Query: 83 PVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVL 142
+L A +L GH+D P + ++D +YG G D K +
Sbjct: 58 NNVLARTNRGLASRVMLA-GHIDTVPIA-------DNLPSRVEDGIMYGCGTVDMKSGLA 109
Query: 143 GWLHAIEAFQQ 153
+LH
Sbjct: 110 VYLHTFATLAT 120
>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme,
structural genomics; 1.65A {Vibrio cholerae o1 biovar el
tor} PDB: 3t6m_A
Length = 268
Score = 68.1 bits (167), Expect = 5e-14
Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 29/145 (20%)
Query: 23 IENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYP 82
+ KE ++ +SV+ P ++LK LG +E + T
Sbjct: 9 LALAKELISRQSVT------PADAGCQDLMIERLKALGFEIESMVFEDTT---------- 52
Query: 83 PVILGNL----GNDKAKHTVLVY-GHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDD 137
N G + + V+ GH DV PA W+T PF T+ D L+GRGA+D
Sbjct: 53 -----NFWARRGT---QSPLFVFAGHTDVVPAGPLSQWHTPPFEPTVIDGFLHGRGAADM 104
Query: 138 KGPVLGWLHAIEAFQQTKKNVPVNI 162
KG + + A+E F + +I
Sbjct: 105 KGSLACMIVAVERFIAEHPDHQGSI 129
>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family
M20/M25/M structural genomics, joint center for
structural genomics; 2.04A {Bacillus cereus atcc 10987}
Length = 373
Score = 44.2 bits (105), Expect = 1e-05
Identities = 27/148 (18%), Positives = 45/148 (30%), Gaps = 34/148 (22%)
Query: 18 NKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGE 77
N+ + + E V ++S + + + + K LG V D T
Sbjct: 4 NQERLVNEFMELVQVDSET-----KFEA-EICKVLTKKFTDLGVEVFEDDTMAVTGHGA- 56
Query: 78 SIKYPPVILGNL-----GNDKAKHTVLVYGHLD-VQPAEKEDGWNTEPFVLTLKDEKLYG 131
GNL T+ H+D V P +P + KD +
Sbjct: 57 ---------GNLICTLPATKDGVDTIYFTSHMDTVVPGN-----GIKPSI---KDGYIVS 99
Query: 132 RGAS----DDKGPVLGWLHAIEAFQQTK 155
G + DDK + AI ++
Sbjct: 100 DGTTILGADDKAGLASMFEAIRVLKEKN 127
>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics,
joint CEN structural genomics, JCSG, protein structure
initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus
aureus subsp}
Length = 396
Score = 41.9 bits (99), Expect = 8e-05
Identities = 21/142 (14%), Positives = 47/142 (33%), Gaps = 19/142 (13%)
Query: 18 NKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGE 77
N+ + + E V I+S + + +K LG V+ +
Sbjct: 22 NEQRLLNTFLELVQIDSETG------NESTIQPILKEKFIALGLDVKEDEAAKHPKLGAN 75
Query: 78 SIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGAS-- 135
++ + + + + + H+D N +P V D +Y G +
Sbjct: 76 NLVC--TMNSTIEEGEVP-KLYLTSHMDTVV----PAINVKPIV--KDDGYIYSDGTTIL 126
Query: 136 --DDKGPVLGWLHAIEAFQQTK 155
DDK + L ++ ++ +
Sbjct: 127 GADDKAGLAAMLEVLQVIKEQQ 148
>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for
structural genomics, JCSG, protein structure INI PSI-2,
hydrolase; 2.11A {Haemophilus somnus 129PT}
Length = 487
Score = 40.3 bits (94), Expect = 3e-04
Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 23/141 (16%)
Query: 18 NKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGE 77
+ + AI S + + + + K G E ++GN
Sbjct: 9 QPKLLWQWFDQICAIPHPSY------KEEQLAQFIINWAKTKGFFAERDEVGNVL----- 57
Query: 78 SIKYPPVILGNLGNDKAKHTVLVYGHLD-VQPAEKEDGWN--TEPFVLTLKDEKLYGRGA 134
I+ P +G + K V++ HLD V A + N +P + + + + +G
Sbjct: 58 -IRKP----ATVGMENRK-PVVLQAHLDMVPQANEGTNHNFDQDPILPYIDGDWVKAKGT 111
Query: 135 S---DDKGPVLGWLHAIEAFQ 152
+ D+ + L +E+
Sbjct: 112 TLGADNGIGMASALAVLESND 132
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.002
Identities = 31/184 (16%), Positives = 52/184 (28%), Gaps = 57/184 (30%)
Query: 2 ASSAEYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTI---NMIHYFADKL-- 56
+ AE + + YV S +E K + ++ + N IH A KL
Sbjct: 55 TTPAELVGKFLGYVSS----LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 57 ---KQLGATVEI-------CDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYG---- 102
L T E+ + + K L + V ++G
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFD-----KKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 103 ---HLDVQPAEKEDGWNT-EPFVLTL----------------KDEKLYGRGASDDKGPVL 142
+ + E D + T V L EK++ +G +L
Sbjct: 166 TDDYFE----ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL-----NIL 216
Query: 143 GWLH 146
WL
Sbjct: 217 EWLE 220
Score = 31.2 bits (70), Expect = 0.28
Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 36/113 (31%)
Query: 113 DGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAI---EAFQQTKKNVPVNIKEVTGKN 169
D ++T P L+ +G P + A E F +
Sbjct: 2 DAYSTRPLTLS------HGSLEHVLLVPTASFFIASQLQEQFNKI--------------- 40
Query: 170 VLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYL-YEISKVTQAELEEAES 221
LP +G + +E E L+ +L Y S V +++ + +
Sbjct: 41 ---LP--EPTEGFAADDEPTTP---AE---LVGKFLGYVSSLVEPSKVGQFDQ 82
Score = 28.1 bits (62), Expect = 3.2
Identities = 25/184 (13%), Positives = 55/184 (29%), Gaps = 78/184 (42%)
Query: 22 FIENLKEAVAI-------------------ESVSSSVQHR-----PQTINMIHYFADKLK 57
F ++++A+ + + S+++ P M+ +
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP----MLSISNLTQE 347
Query: 58 QLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNT 117
Q+ V N LP G+ + LV N
Sbjct: 348 QVQDYVNKT---NSHLPAGKQV----------------EISLV---------------NG 373
Query: 118 -EPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEA---FQQTKKNVPVNIKEVTGKNVLLL 173
+ V++ + LYG + L +A Q++ +P + +++ N L
Sbjct: 374 AKNLVVSGPPQSLYG---------LNLTLRKAKAPSGLDQSR--IPFSERKLKFSNR-FL 421
Query: 174 PMGA 177
P+ +
Sbjct: 422 PVAS 425
>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer,
hydrolase; 3.00A {Vibrio alginolyticus}
Length = 490
Score = 35.7 bits (82), Expect = 0.009
Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 23/139 (16%)
Query: 18 NKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGE 77
+ + + +I S + Y + G V GN
Sbjct: 12 SPAPLWQFFDKICSIPHPSK------HEEALAQYIVTWATEQGFDVRRDPTGNVF----- 60
Query: 78 SIKYPPVILGNLGNDKAKHTVLVYGHLD-VQPAEKEDGWN--TEPFVLTLKDEKLYGRGA 134
IK P G + K V++ H+D V ++ + +P + E + +G
Sbjct: 61 -IKKP----ATPGMENKK-GVVLQAHIDMVPQKNEDTDHDFTQDPIQPYIDGEWVTAKGT 114
Query: 135 S---DDKGPVLGWLHAIEA 150
+ D+ + L + +
Sbjct: 115 TLGADNGIGMASCLAVLAS 133
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.016
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 22/45 (48%)
Query: 110 EKEDGWNTEPFVLTLKD-E---KLYGRGASDDKGPVLGWLHAIEA 150
EK+ LK + KLY +DD P L AI+A
Sbjct: 18 EKQ----------ALKKLQASLKLY----ADDSAPAL----AIKA 44
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural
genomics, joint CEN structural genomics, JCSG; 1.06A
{Parabacteroides distasonis}
Length = 309
Score = 34.7 bits (79), Expect = 0.019
Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 11/112 (9%)
Query: 51 YFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAE 110
Y A +LK+ GA V T +G ++ +I + + VL++ H D +P
Sbjct: 53 YLASELKRFGAKVYQ-QEAILTAYDGTKLEARNIIGSF--DPENSKRVLLFAHWDSRPYS 109
Query: 111 KEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNI 162
D + GA D V L Q + ++I
Sbjct: 110 DHD--------PDPSKHRTPLDGADDGGSGVGALLEIARQIGQKAPGIGIDI 153
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase,
phosphorylase/hydrolase-like fold, structura genomics;
1.80A {Bacteroides vulgatus atcc 8482}
Length = 314
Score = 33.6 bits (76), Expect = 0.034
Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 17/115 (14%)
Query: 51 YFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLD---VQ 107
Y A +L++ GA V + +G +K +I ++K +L+ H D
Sbjct: 55 YLAGQLEKFGAKVYN-QYADLIAYDGTILKSRNIIGAY--KPESKKRILLCAHWDSRPYA 111
Query: 108 PAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNI 162
+ + + P + G +D V L Q+ + + ++I
Sbjct: 112 DNDPDPKNHHTPIL-----------GVNDGASGVGVLLEIARQIQKEQPALGIDI 155
>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein,
metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP:
c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A*
2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A
2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ...
Length = 329
Score = 33.2 bits (75), Expect = 0.045
Identities = 29/205 (14%), Positives = 68/205 (33%), Gaps = 27/205 (13%)
Query: 3 SSAEYLAEISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGAT 62
++ L +I+E ++ ++ +N + + IE S + ++++L A
Sbjct: 16 LNSSALRQIAE--GTSISEMWQNDLQPLLIERYPGSPGSY----AARQHIMQRIQRLQAD 69
Query: 63 VEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVL 122
+ +I + I+ L N AK +++ H D + +
Sbjct: 70 WVL-EIDTFLSQTPYGYRSFSNIISTL-NPTAKRHLVLACHYDSKYFSHWN--------- 118
Query: 123 TLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGKNVLLLPMGASDDGA 182
GA+D P L A + ++ ++ L+ +
Sbjct: 119 -----NRVFVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFL 173
Query: 183 HSQNEKIDVRNYIEGTKLLAAYLYE 207
H + + + G++ LAA +
Sbjct: 174 HWSPQ-----DSLYGSRHLAAKMAS 193
>1q7l_B Aminoacylase-1; catalysis, enzyme dimerization, site- directed
mutagenesis, structure comparison, zinc, hydrolase;
1.40A {Homo sapiens} SCOP: c.56.5.4
Length = 88
Score = 30.2 bits (68), Expect = 0.12
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 174 PMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKV 211
PM + H +E++ ++ G + L ++ V
Sbjct: 44 PMNRTPVLLHDHDERLHEAVFLRGVDIYTRLLPALASV 81
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.16
Identities = 30/202 (14%), Positives = 66/202 (32%), Gaps = 48/202 (23%)
Query: 23 IENLKEAVAIESVSSSV--QHRPQTINMIH--YF-----ADKLKQLGATVEICDIGNQTL 73
I++ V + S+ + ++ I Y + L ++ + + +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI----VDHYNI 455
Query: 74 PNGESIKYPPVILGNLGNDKAKHTVLVYGHLD-VQPAEKED------------------- 113
P + L D+ ++ + + HL ++ E+
Sbjct: 456 PK----TFDSDDLIPPYLDQYFYSHIGH-HLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 114 --GWNTEPFVL-TLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGKNV 170
WN +L TL+ K Y D+ ++AI F + + K ++
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY---TDL 567
Query: 171 LLLPMGASDDG----AHSQNEK 188
L + + A D+ AH Q ++
Sbjct: 568 LRIALMAEDEAIFEEAHKQVQR 589
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Length = 247
Score = 29.1 bits (65), Expect = 0.95
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 48 MIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPV 84
+ L+ GA V++ D LP+ + +P V
Sbjct: 53 LAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKV 89
>2fzv_A Putative arsenical resistance protein; flavin binding protein,
structural genomics, PSI, protein ST initiative; 1.70A
{Shigella flexneri 2A} SCOP: c.23.5.4
Length = 279
Score = 28.4 bits (63), Expect = 1.5
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 48 MIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPP 83
+ A L+ GA I D + LP+ P
Sbjct: 77 AVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHP 112
>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution,
hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4
PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A
1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A
3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ...
Length = 299
Score = 28.2 bits (63), Expect = 1.9
Identities = 15/108 (13%), Positives = 33/108 (30%), Gaps = 16/108 (14%)
Query: 50 HYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPA 109
+ A + + L A++ + + V++ G++ +++ GHLD
Sbjct: 47 DWIASEWQALSASLPNASVKQVSHSGYNQ---KSVVMTITGSEAPDEWIVIGGHLDSTIG 103
Query: 110 EKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKN 157
+ + P GA DD + I +
Sbjct: 104 SHTNEQSVAP-------------GADDDASGIAAVTEVIRVLSENNFQ 138
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein,
DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase;
HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A*
2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A
Length = 474
Score = 28.4 bits (64), Expect = 2.0
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 18/60 (30%)
Query: 51 YFADKLKQLGATVEICDIGNQ--TLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQP 108
+F ++ + LG V++ IGN P G++ P G HLD QP
Sbjct: 75 WFTNECESLGCKVKVDKIGNMFAVYP-GKN-GGKPTATG--------------SHLDTQP 118
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 28.0 bits (62), Expect = 2.8
Identities = 12/82 (14%), Positives = 20/82 (24%), Gaps = 11/82 (13%)
Query: 6 EYLAEISEYVESNKNKFIENLKEAVAIESVSS--SVQHRPQTINMIHYFADKLKQLGATV 63
++L I + K +AI+S+S+ + KQ T
Sbjct: 358 DHLQIIKSEINDFKPAR-------IAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITG 410
Query: 64 EICDIGNQTLPNGESIKYPPVI 85
G I
Sbjct: 411 LF--TNTSDQFMGAHSITDSHI 430
>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain,
M20 peptidase family, evolution, residue, dimerization
domain; 2.75A {Bacillus stearothermophilus}
Length = 408
Score = 27.1 bits (61), Expect = 4.3
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 17/60 (28%)
Query: 51 YFADKLKQLGATVEICDIGNQ--TLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQP 108
A +++ G V GN G + V++G+ HLD
Sbjct: 40 LVASYMREAGLFVYEDAAGNLIGRKE-GTNPDATVVLVGS--------------HLDSVY 84
>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin
utilization, structural genomics, PSI, Pro structure
initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP:
c.56.5.4 d.58.19.1 PDB: 2imo_A
Length = 423
Score = 27.1 bits (61), Expect = 4.7
Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 17/60 (28%)
Query: 51 YFADKLKQLGATVEICDIGNQ--TLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQP 108
F ++ G ++GN L G V+ G+ H+D
Sbjct: 44 QFKKRMAASGLETRFDEVGNLYGRLN-GTEYPQEVVLSGS--------------HIDTVV 88
>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A
{Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB:
1vix_A
Length = 417
Score = 26.8 bits (59), Expect = 6.0
Identities = 26/163 (15%), Positives = 47/163 (28%), Gaps = 36/163 (22%)
Query: 20 NKFIENLKEAVAIESVS----SSVQHRPQTINMIHYFADKLKQLGATVEICD---IGNQT 72
+K +E V++++ S V ++ +L+++G T
Sbjct: 2 DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEMGLVNITLSEKGTLMAT 61
Query: 73 LPNGESIKYPPVILGNLGNDKAKH--TVLVYGHLDVQP--AEKEDGW----NTEPFVLT- 123
LP P + H T + +V P E G VL+
Sbjct: 62 LPANVEGDIPAIGF-------ISHVDTSPDFSGKNVNPQIVENYRGGDIALGIGDEVLSP 114
Query: 124 ---------LKDEKLYGRG----ASDDKGPVLGWLHAIEAFQQ 153
L + G +DDK V + A+ +
Sbjct: 115 VMFPVLHQLLGQTLITTDGKTLLGADDKAGVAEIMTALAVLKG 157
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein
transport, transc transcription regulation, transport,
endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Length = 234
Score = 26.1 bits (57), Expect = 9.6
Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 54 DKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAK--HTVLVYGHLDVQPAEK 111
KLK LG I +G L I+ P L D G++ V +
Sbjct: 125 KKLKALGTGFGIIPVGGTYL-----IQSVP---AELNMDHTVVLQLAEKNGYVTVSEIKA 176
Query: 112 EDGWNTEPFVLTLKD 126
W TE L+
Sbjct: 177 SLKWETERARQVLEH 191
>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI,
structure initiative; 2.15A {Shigella flexneri 2a str}
SCOP: b.49.3.1 c.56.5.4
Length = 348
Score = 26.0 bits (58), Expect = 9.7
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 183 HSQNEKIDVRNYIEGTKLLAAYLYEISKVTQAELEE 218
H D R+ ++ +LL+A + +++ T +L +
Sbjct: 311 HCAASIADCRDILQMEQLLSALIQRLTRETVVQLTD 346
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.130 0.364
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,244,634
Number of extensions: 185531
Number of successful extensions: 389
Number of sequences better than 10.0: 1
Number of HSP's gapped: 368
Number of HSP's successfully gapped: 51
Length of query: 223
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 133
Effective length of database: 4,188,903
Effective search space: 557124099
Effective search space used: 557124099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (24.9 bits)