RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17305
(223 letters)
>d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV
{Lactobacillus delbrueckii [TaxId: 1584]}
Length = 272
Score = 66.9 bits (162), Expect = 5e-14
Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 25/161 (15%)
Query: 10 EISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQ------TINMIHYFADKLKQLGATV 63
E E+ K+ +++L+E +AI+S + ++ + F K+ G
Sbjct: 4 NFKELAEAKKDAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDGFDT 63
Query: 64 EICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLT 123
E G + + + GH+DV P +GW +PF +
Sbjct: 64 ENFA----------------NYAGRVNFGAGDKRLGIIGHMDVVP--AGEGWTRDPFKME 105
Query: 124 LKDEK-LYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNIK 163
+ +E +YGRG++DDKGP L + + ++ I
Sbjct: 106 IDEEGRIYGRGSADDKGPSLTAYYGMLLLKEAGFKPKKKID 146
>d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate
desuccinylase, catalytic domain {Neisseria meningitidis
[TaxId: 487]}
Length = 262
Score = 65.4 bits (158), Expect = 2e-13
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 19/143 (13%)
Query: 19 KNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGES 78
+ + +E KE ++ SV+ P + A++L ++G E GN
Sbjct: 2 ETQSLELAKELISRPSVT------PDDRDCQKLMAERLHKIGFAAEEMHFGN-------- 47
Query: 79 IKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDK 138
+ L V GH DV P + W++ PF +D +LYGRGA+D K
Sbjct: 48 --TKNIWLRRGTKAP---VVCFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADMK 102
Query: 139 GPVLGWLHAIEAFQQTKKNVPVN 161
+ ++ A E F N +
Sbjct: 103 TSIACFVTACERFVAKHPNHQGS 125
>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2,
catalytic domain {Pseudomonas sp., strain rs-16 [TaxId:
306]}
Length = 276
Score = 63.4 bits (153), Expect = 1e-12
Identities = 30/152 (19%), Positives = 57/152 (37%), Gaps = 16/152 (10%)
Query: 11 ISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGN 70
+ + + I+ L++ V IE+ + + ++ +LK LG TV
Sbjct: 7 LFQAATDEQPAVIKTLEKLVNIETGTGDAEGIAA---AGNFLEAELKNLGFTVTRSKS-- 61
Query: 71 QTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLY 130
+ I+G + K +L+ H+D + PF ++ +K Y
Sbjct: 62 ------AGLVVGDNIVGKIKGRGGK-NLLLMSHMDTVY--LKGILAKAPF--RVEGDKAY 110
Query: 131 GRGASDDKGPVLGWLHAIEAFQQTKKNVPVNI 162
G G +DDKG LH ++ ++ I
Sbjct: 111 GPGIADDKGGNAVILHTLKLLKEYGVRDYGTI 142
>g1q7l.1 c.56.5.4 (A:,B:) Aminoacylase-1, catalytic domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 280
Score = 63.2 bits (153), Expect = 1e-12
Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 13/146 (8%)
Query: 18 NKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGE 77
++ + ++ + I +V + + +F + +QLG + ++
Sbjct: 2 EEHPSVTLFRQYLRIRTVQPKPDYGA----AVAFFEETARQLGLGCQKVEVAP------- 50
Query: 78 SIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDD 137
Y +L G + ++L+ H DV P KE + + +Y RGA D
Sbjct: 51 --GYVVTVLTWPGTNPTLSSILLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYARGAQDM 108
Query: 138 KGPVLGWLHAIEAFQQTKKNVPVNIK 163
K + +L A+ + P I
Sbjct: 109 KCVSIQYLEAVRRLKVEGHRFPRTIH 134
>d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase),
catalytic domain {Salmonella typhimurium [TaxId: 90371]}
Length = 295
Score = 51.5 bits (122), Expect = 2e-08
Identities = 20/169 (11%), Positives = 41/169 (24%), Gaps = 44/169 (26%)
Query: 20 NKFIENLKEAVAIESVS----SSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPN 75
+K +E V++++ S V ++ +L+++G
Sbjct: 2 DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEMGLVNITLS------EK 55
Query: 76 GESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPA-------------------------E 110
G + P + + H+D P E
Sbjct: 56 GTLMATLPAN-----VEGDIPAIGFISHVDTSPDFSGKNVNPQIVENYRGGDIALGIGDE 110
Query: 111 KEDGWNTEPFVLTLKDEKLYGRG----ASDDKGPVLGWLHAIEAFQQTK 155
L + G +DDK V + A+ +
Sbjct: 111 VLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGVAEIMTALAVLKGNP 159
Score = 25.7 bits (55), Expect = 5.3
Identities = 3/45 (6%), Positives = 15/45 (33%)
Query: 166 TGKNVLLLPMGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISK 210
+ + + H ++E + + + +++ +K
Sbjct: 249 SFMGLPCPNLFTGGYNYHGKHEFVTLEGMEKAVQVIVRIAELTAK 293
>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica
[TaxId: 671]}
Length = 291
Score = 41.4 bits (96), Expect = 4e-05
Identities = 15/112 (13%), Positives = 34/112 (30%), Gaps = 16/112 (14%)
Query: 51 YFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAE 110
+ A + + L A++ + + V++ G++ +++ GHLD
Sbjct: 48 WIASEWQALSASLPNASVKQVS---HSGYNQKSVVMTITGSEAPDEWIVIGGHLDSTIGS 104
Query: 111 KEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVPVNI 162
+ + GA DD + I + +I
Sbjct: 105 HTNEQSV-------------APGADDDASGIAAVTEVIRVLSENNFQPKRSI 143
>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE
{Bacillus cereus [TaxId: 1396]}
Length = 233
Score = 39.5 bits (92), Expect = 1e-04
Identities = 29/237 (12%), Positives = 72/237 (30%), Gaps = 60/237 (25%)
Query: 18 NKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQT-LPNG 76
+ + +E +KE V+I S S T +I++ + + + + + G G
Sbjct: 2 HTKETMELIKELVSIPSPSG------NTAKIINFIENYVSEWNVETKRNNKGALILTVKG 55
Query: 77 ESIKYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGA-- 134
++ ++ ++ ++ + E T F+++ +E++ G
Sbjct: 56 KNDAQHRLLTAHVDTLDKVSVAILLKLIKRLQDENVTLPYTTHFLISN-NEEIGYGGNSN 114
Query: 135 ---------------------SDDKGPVLGWLHAIEAFQQTKKNVPVNIKEVTGKNVL-- 171
SD+ + + + + ++ E+ N +
Sbjct: 115 IPEETVEYLAVDMGALGDGQASDEYTVSICAKDSSGPYH---YALRKHLVELAKTNHIEY 171
Query: 172 ---LLPMGASDDGA--------------------HSQNEKIDVRNYIEGTKLLAAYL 205
+ P SD A H+ E+ + L+ AY+
Sbjct: 172 KVDIYPYYGSDASAAIRAGFDVKHALIGAGIDSSHAF-ERTHESSIAHTEALVYAYV 227
>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC,
catalytic domain {Bacillus subtilis [TaxId: 1423]}
Length = 275
Score = 37.9 bits (87), Expect = 5e-04
Identities = 18/151 (11%), Positives = 41/151 (27%), Gaps = 29/151 (19%)
Query: 20 NKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESI 79
++ + LK+ + + + ++ V +G+
Sbjct: 3 DETLTMLKDLTDAKGIPG------NEREVRQVMKSYIEPFADEVTTDRLGS--------- 47
Query: 80 KYPPVILGNLGNDKAKHTVLVYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKG 139
++ + +++ GHLD P + N E F A D++
Sbjct: 48 -----LIAKKTGAENGPKIMIAGHLDEVPHFEFTVMNNEKF---------LLAKAWDNRI 93
Query: 140 PVLGWLHAIEAFQQTKKNVPVNIKEVTGKNV 170
+ + Q T V + V
Sbjct: 94 GCAIAIDVLRNLQNTDHPNIVYGVGTVQEEV 124
Score = 29.9 bits (66), Expect = 0.23
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 183 HSQNEKIDVRNYIEGTKLLAAYLYEISKVTQAELEEAE 220
H+ + +Y KL+ + ++ + T E+ E
Sbjct: 233 HTHAAMLHRDDYENAVKLITEVIKKLDRKTVDEITYQE 270
>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella
flexneri [TaxId: 623]}
Length = 264
Score = 33.7 bits (76), Expect = 0.013
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 175 MGASDDGAHSQNEKIDVRNYIEGTKLLAAYLYEISKVTQAELEE 218
MG + H D R+ ++ +LL+A + +++ T +L +
Sbjct: 219 MGPATRHGHCAASIADCRDILQMEQLLSALIQRLTRETVVQLTD 262
>d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine
synthase, catalytic domain {Yeast (Saccharomyces
kluyveri) [TaxId: 4934]}
Length = 322
Score = 31.5 bits (71), Expect = 0.060
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 14/59 (23%)
Query: 50 HYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQP 108
+F ++ + LG V++ IGN + HLD QP
Sbjct: 58 DWFTNECESLGCKVKVDKIGN--------------MFAVYPGKNGGKPTATGSHLDTQP 102
>d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048,
catalytic domain {Thermotoga maritima [TaxId: 2336]}
Length = 248
Score = 29.2 bits (64), Expect = 0.30
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 183 HSQNEKIDVRNYIEGTKLLAAYLYEI 208
H+ E +D R+ E +LL+ E+
Sbjct: 222 HTPVEMVDPRDVEELARLLSLVAVEL 247
>d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC
catalytic domain {Escherichia coli [TaxId: 562]}
Length = 293
Score = 28.9 bits (64), Expect = 0.44
Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 13/59 (22%)
Query: 50 HYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVLVYGHLDVQP 108
F ++ G ++GN + G + + VL H+D
Sbjct: 40 QQFKKRMAASGLETRFDEVGN-------------LYGRLNGTEYPQEVVLSGSHIDTVV 85
>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049
{Thermotoga maritima [TaxId: 2336]}
Length = 255
Score = 28.0 bits (61), Expect = 0.97
Identities = 20/181 (11%), Positives = 43/181 (23%), Gaps = 12/181 (6%)
Query: 40 QHRPQTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTVL 99
+ + + D +++ + G + + G G+ +
Sbjct: 68 DYIEKNGRAVGKAFDDRAGCSVLIDVLESGVSPAYDTYFVFTVQEETGLRGSAVVVEQLK 127
Query: 100 VYGHLDVQPAEKEDGWNTEPFVLTLKDEKLYGRGASDDKGPVLGWLHAIEAFQQTKKNVP 159
+ V+ D E + + ++P
Sbjct: 128 PTCAIVVETTTAGDNPELEERKWATHLGDGPAITFYHRGYVIPKEIFQTIVDTAKNNDIP 187
Query: 160 VNIKEVTGKNVLLLPMGASDDG------------AHSQNEKIDVRNYIEGTKLLAAYLYE 207
+K T + G HS N ID+ +Y KL+ + E
Sbjct: 188 FQMKRRTAGGTDAGRYARTAYGVPAGVISTPARYIHSPNSIIDLNDYENTKKLIKVLVEE 247
Query: 208 I 208
Sbjct: 248 G 248
>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX,
catalytic domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 255
Score = 26.9 bits (59), Expect = 2.1
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 183 HSQNEKIDVRNYIEGTKLLAAYLYEISKVTQAELEEAESTK 223
HS E +D R+ +L+ L I ++ + +
Sbjct: 160 HSNTEVVDERDVDATVELMTKALENIHELMVDYELLKKVVE 200
>d2fzva1 c.23.5.4 (A:1-233) Putative arsenical resistance protein
{Shigella flexneri [TaxId: 623]}
Length = 233
Score = 26.6 bits (58), Expect = 2.5
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 42 RPQTIN--MIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPP 83
R ++ + + A L+ GA I D + LP+ P
Sbjct: 45 RARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHP 88
>d2ah2a1 b.29.1.15 (A:409-633) Trypanosoma sialidase, C-terminal
domain {Parasitic flagellate protozoan (Trypanosoma
cruzi) [TaxId: 5693]}
Length = 225
Score = 25.1 bits (55), Expect = 7.8
Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 17/83 (20%)
Query: 44 QTINMIHYFADKLKQLGATVEICDIGNQTLPNGESIKYPPVILGNLGNDKAKHTV-LVYG 102
Q N ++FA+ L A+V I +P G S P++ +L + K + L Y
Sbjct: 61 QGQNQRYHFANHAFTLVASVTI-----HEVPKGAS----PLLGASLDSSGGKKLLGLSYD 111
Query: 103 H-------LDVQPAEKEDGWNTE 118
P W
Sbjct: 112 KRHQWQPIYGSTPVTPTGSWEMG 134
>d1sr9a3 d.270.1.1 (A:492-643) 2-isopropylmalate synthase LeuA,
allosteric (dimerisation) domain {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 152
Score = 24.7 bits (53), Expect = 8.0
Identities = 10/92 (10%), Positives = 25/92 (27%), Gaps = 3/92 (3%)
Query: 49 IHYFADKLKQLGATVEICDIGNQTLPNGESIK---YPPVILGNLGNDKAKHTVLVYGHLD 105
+ F L +G V + D + G+ + Y + +
Sbjct: 44 LAAFVHALADVGFDVAVLDYYEHAMSAGDDAQAAAYVEASVTIASPAQPGEAGRHASDPV 103
Query: 106 VQPAEKEDGWNTEPFVLTLKDEKLYGRGASDD 137
+ + G + + ++G G +
Sbjct: 104 TIASPAQPGEAGRHASDPVTSKTVWGVGIAPS 135
>d1td6a_ a.234.1.1 (A:) Hypothetical protein MPN330 {Mycoplasma
pneumoniae [TaxId: 2104]}
Length = 286
Score = 24.9 bits (54), Expect = 8.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 11 ISEYVESNKNKFIENLKEAVAIESVSSSVQHRPQTINMIHYFADKLK 57
++ + +N + +L A IE V +Q P +NMIHY K K
Sbjct: 87 VNHDLLEQQNAALASLPAAKIIELV---LQDYPNKLNMIHYLLPKTK 130
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.130 0.364
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 775,229
Number of extensions: 34156
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 23
Length of query: 223
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,281,736
Effective search space: 180724776
Effective search space used: 180724776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.9 bits)