BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17306
(904 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 335 bits (860), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 185/304 (60%), Positives = 219/304 (72%), Gaps = 16/304 (5%)
Query: 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAI 69
G +ELAHREYQAGD+E+AERHCMQLWRQE +NTGVLLLLSSIHFQCR+LD+SAHFSTLAI
Sbjct: 1 GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
KQNPLLAEAYSNLGNVYKERGQLQEA+E+YRHA+RLKPDFIDGYINLAAALVAAGDME A
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY-----------CVRSDLGNLLK 178
VQAYV+ALQYNPDLYCVRSDLGNLLKALGRL+EAK Y S+LG +
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180
Query: 179 ALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL-AIKQNPLLAE 235
A G + A + H E + +A + N G ++ + A + L A+ +P A
Sbjct: 181 AQGEIWLAIH-HFEKAVTLDPNFLDAYI-NLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238
Query: 236 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
+ NL VY E+G + A++ YR A+ L+P F D Y NLA AL G + +A Y TAL
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298
Query: 296 QYNP 299
+ P
Sbjct: 299 RLCP 302
Score = 300 bits (768), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 152/212 (71%), Positives = 171/212 (80%), Gaps = 28/212 (13%)
Query: 531 NYVAAARATKYVYNVEPDLTREGGSIPI--TLTFECRKLDKSAHFSTLAIKQNPLLAEAY 588
++ AA R ++ EPD T G + + ++ F+CR+LD+SAHFSTLAIKQNPLLAEAY
Sbjct: 14 DFEAAERHCMQLWRQEPDNT---GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAY 70
Query: 589 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 648
SNLGNVYKERGQLQEA+E+YRHA+RLKPDFIDGYINLAAALVAAGDME AVQAYV+ALQY
Sbjct: 71 SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY 130
Query: 649 NP-----------------------SCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
NP +CYLKAIET+P+FAVAWSNLGCVFNAQGEIWLAIH
Sbjct: 131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIH 190
Query: 686 HFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
HFEKAV+LDPNFLDAYINLGNVLKEARIFDRA
Sbjct: 191 HFEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 114/224 (50%), Gaps = 14/224 (6%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
AI+ P A A+SNLG V+ +G++ A+ ++ AV L P+F+D YINL L A +
Sbjct: 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD 220
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNL 176
+AV AY+ AL +P+ V +L + G +D A D Y +L N
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280
Query: 177 LKALGRLDEAKNLHTENIK--PVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLA 234
LK G + EA++ + ++ P N + N + E+ A++ P A
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLA-NIKREQGNIEEAVRLYRKALEVFPEFA 339
Query: 235 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 278
A+SNL +V +++G+LQEAL +Y+ A+R+ P F D Y N+ L
Sbjct: 340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 87/171 (50%), Gaps = 23/171 (13%)
Query: 563 ECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 622
E R D++ A+ +P A + NL VY E+G + A++ YR A+ L+P F D Y
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274
Query: 623 INLAAALVAAGDMEQAVQAYVTALQYNPS-----------------------CYLKAIET 659
NLA AL G + +A Y TAL+ P+ Y KA+E
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334
Query: 660 RPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKE 710
P+FA A SNL V QG++ A+ H+++A+ + P F DAY N+GN LKE
Sbjct: 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 96/179 (53%), Gaps = 19/179 (10%)
Query: 532 YVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNL 591
YV+A + +Y V DL G++ L +L+++ AI+ P A A+SNL
Sbjct: 124 YVSALQYNPDLYCVRSDL----GNLLKALG----RLEEAKACYLKAIETQPNFAVAWSNL 175
Query: 592 GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS 651
G V+ +G++ A+ ++ AV L P+F+D YINL L A ++AV A
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA---------- 225
Query: 652 CYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKE 710
YL+A+ P+ AV NL CV+ QG I LAI + +A+ L P+F DAY NL N LKE
Sbjct: 226 -YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE 283
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 96/202 (47%), Gaps = 28/202 (13%)
Query: 48 LSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 107
L ++ + R D++ A+ +P A + NL VY E+G + A++ YR A+ L+P
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268
Query: 108 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
F D Y NLA AL G + +A Y TAL+ P ++L N+ + G ++EA LY
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328
Query: 168 CVRSDLGNLLKALGRLDEAKNLHTENIKPVTM---KVQNAIVCNYGGRKPTTLESAHFST 224
KAL E H+ N+ V K+Q A++ H+
Sbjct: 329 ---------RKALEVFPEFAAAHS-NLASVLQQQGKLQEALM--------------HYKE 364
Query: 225 LAIKQNPLLAEAYSNLGNVYKE 246
AI+ +P A+AYSN+GN KE
Sbjct: 365 -AIRISPTFADAYSNMGNTLKE 385
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 55/90 (61%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A++ P A++ +NL N+ +E+G ++EA+ YR A+ + P+F + NLA+ L G ++
Sbjct: 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 356
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKAL 157
+A+ Y A++ +P S++GN LK +
Sbjct: 357 EALMHYKEAIRISPTFADAYSNMGNTLKEM 386
>pdb|2ZOF|A Chain A, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
Mn Bestatin
pdb|2ZOF|B Chain B, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
Mn Bestatin
pdb|2ZOG|A Chain A, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
Zn Bestatin
pdb|2ZOG|B Chain B, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
Zn Bestatin
Length = 479
Score = 255 bits (652), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 123/212 (58%), Positives = 150/212 (70%)
Query: 352 CAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTE 411
C I++EC+ KDLHSG++GGSVHEAMTDLI +MG LV+ GKILIP I V P+ D E
Sbjct: 218 CYFFIEVECSDKDLHSGVYGGSVHEAMTDLISLMGCLVDKKGKILIPGINDAVAPVTDEE 277
Query: 412 EQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIP 471
Y+ IDFD E+F + L + K +LM RWRYPSLSLHGIEGAFSG G KTVIP
Sbjct: 278 HALYDHIDFDMEEFAKDVGAETLLHSCKKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIP 337
Query: 472 GKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPN 531
KVVGKFSIR+VP+ P+ V + V YL++ + SPNKFK Y+ GK W ++ HP+
Sbjct: 338 RKVVGKFSIRLVPDMIPEVVSEQVSSYLSKKFAELQSPNKFKVYMGHGGKPWVSDFNHPH 397
Query: 532 YVAAARATKYVYNVEPDLTREGGSIPITLTFE 563
Y A RA K V+ VEPDLTREGGSIP+TLTF+
Sbjct: 398 YQAGRRALKTVFGVEPDLTREGGSIPVTLTFQ 429
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 304 EDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASK 363
EDGW++EPF L ER L+ RG+ K PV G +A+E+ ++ VN++ C
Sbjct: 112 EDGWDSEPFTL-VEREGKLYGRGS-TDDKGPVAGWMNALEAYQKTGQEIPVNLRF-CLEG 168
Query: 364 DLHSGLFGGSVHEAMTDLIY 383
SG E + +LI+
Sbjct: 169 MEESG------SEGLDELIF 182
>pdb|3DLJ|A Chain A, Crystal Structure Of Human Carnosine Dipeptidase 1
pdb|3DLJ|B Chain B, Crystal Structure Of Human Carnosine Dipeptidase 1
Length = 485
Score = 197 bits (500), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 131/208 (62%)
Query: 356 IKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFY 415
++++C +D HSG FGG +HE M DL+ ++G LV+ +G IL+P IY +V PL + E Y
Sbjct: 229 VEVKCRDQDFHSGTFGGILHEPMADLVALLGSLVDSSGHILVPGIYDEVVPLTEEEINTY 288
Query: 416 EKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVV 475
+ I D E++R + K K ++LM WRYPSLS+HGIEGAF PG KTVIPG+V+
Sbjct: 289 KAIHLDLEEYRNSSRVEKFLFDTKEEILMHLWRYPSLSIHGIEGAFDEPGTKTVIPGRVI 348
Query: 476 GKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAA 535
GKFSIR+VP+ VEK V +L +++ RNS NK + W N + Y+AA
Sbjct: 349 GKFSIRLVPHMNVSAVEKQVTRHLEDVFSKRNSSNKMVVSMTLGLHPWIANIDDTQYLAA 408
Query: 536 ARATKYVYNVEPDLTREGGSIPITLTFE 563
RA + V+ EPD+ R+G +IPI F+
Sbjct: 409 KRAIRTVFGTEPDMIRDGSTIPIAKMFQ 436
>pdb|1OFC|X Chain X, Nucleosome Recognition Module Of Iswi Atpase
Length = 304
Score = 136 bits (342), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 70/86 (81%)
Query: 799 ERKANYAVDAYFKEALRTSEXXXXXXXXXXXXXIVQDFQFFPPRLFEILDQEIYYFRKTV 858
ERKANYAVDAYF+EALR SE IVQDFQFFPPRLFE+LDQEIYYFRKTV
Sbjct: 4 ERKANYAVDAYFREALRVSEPKAPKAPRPPKQPIVQDFQFFPPRLFELLDQEIYYFRKTV 63
Query: 859 GYKVPKNPELGSDATKAQKEEQKKID 884
GYKVPKN ELGSDATK Q+EEQ+KID
Sbjct: 64 GYKVPKNTELGSDATKVQREEQRKID 89
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 100/211 (47%), Gaps = 56/211 (26%)
Query: 73 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA 132
P A++ +NL N+ +E+G ++EA+ YR A+ + P+F + NLA+ L G +++A+
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 133 YVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTE 192
Y A++ +P S++GN LK E +D
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLK------EMQD--------------------------- 92
Query: 193 NIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 252
VQ A+ C T AI+ NP A+A+SNL +++K+ G + E
Sbjct: 93 --------VQGALQC---------------YTRAIQINPAFADAHSNLASIHKDSGNIPE 129
Query: 253 ALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
A+ +YR A++LKPDF D Y NLA L D
Sbjct: 130 AIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 11/133 (8%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++ P A A+SNL +V +++G+LQEAL +Y+ A+R+ P F D Y N+ L D++
Sbjct: 35 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQ 94
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
A+Q CY +AI+ P FA A SNL + G I AI + A+ L P+
Sbjct: 95 GALQ-----------CYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143
Query: 697 FLDAYINLGNVLK 709
F DAY NL + L+
Sbjct: 144 FPDAYCNLAHCLQ 156
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 67/116 (57%)
Query: 48 LSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 107
L++I + ++++ A++ P A A+SNL +V +++G+LQEAL +Y+ A+R+ P
Sbjct: 15 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74
Query: 108 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEA 163
F D Y N+ L D++ A+Q Y A+Q NP S+L ++ K G + EA
Sbjct: 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 130
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 48 LSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 107
L+S+ Q KL ++ AI+ +P A+AYSN+GN KE +Q AL+ Y A+++ P
Sbjct: 49 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108
Query: 108 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL---YC 145
F D + NLA+ +G++ +A+ +Y TAL+ PD YC
Sbjct: 109 AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYC 149
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 12/144 (8%)
Query: 528 EHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEA 587
E N A R + V P+ ++ L + + + H+ AI+ +P A+A
Sbjct: 21 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE-AIRISPTFADA 79
Query: 588 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 647
YSN+GN KE +Q AL+ Y A+++ P F D + NLA+ +G++ +A+ +Y TAL+
Sbjct: 80 YSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK 139
Query: 648 YNPSCYLKAIETRPDFAVAWSNLG 671
+PDF A+ NL
Sbjct: 140 L-----------KPDFPDAYCNLA 152
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
A++ P A A+SNL +V +++G+LQEAL +Y+ A+R+ P F D Y N+ L D++
Sbjct: 35 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQ 94
Query: 286 QAVQAYVTALQYNP 299
A+Q Y A+Q NP
Sbjct: 95 GALQCYTRAIQINP 108
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 11/97 (11%)
Query: 616 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFN 675
P D NLA G++E+AV+ Y KA+E P+FA A SNL V
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVR-----------LYRKALEVFPEFAAAHSNLASVLQ 54
Query: 676 AQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEAR 712
QG++ A+ H+++A+ + P F DAY N+GN LKE +
Sbjct: 55 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 91
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 56/193 (29%)
Query: 107 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDL 166
P D NLA G++E+AV+ Y AL+ P+ S+L ++L+ G
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG-------- 57
Query: 167 YCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLA 226
K+Q A++ H+ A
Sbjct: 58 ---------------------------------KLQEALM--------------HYKE-A 69
Query: 227 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 286
I+ +P A+AYSN+GN KE +Q AL+ Y A+++ P F D + NLA+ +G++ +
Sbjct: 70 IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPE 129
Query: 287 AVQAYVTALQYNP 299
A+ +Y TAL+ P
Sbjct: 130 AIASYRTALKLKP 142
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 66 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 125
T AI+ NP A+A+SNL +++K+ G + EA+ +YR A++LKPDF D Y NLA L D
Sbjct: 101 TRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 72/133 (54%), Gaps = 11/133 (8%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
AEA+ NLGN Y ++G EA+E Y+ A+ L P + + NL A GD ++A++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE---- 56
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
Y KA+E P A AW NLG + QG+ AI +++KA+ LDP +A+ NL
Sbjct: 57 -------YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 109
Query: 705 GNVLKEARIFDRA 717
GN + +D A
Sbjct: 110 GNAYYKQGDYDEA 122
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 11/128 (8%)
Query: 568 DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 627
D++ + A++ +P AEA+ NLGN Y ++G EA+E Y+ A+ L P + + NL
Sbjct: 18 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN 77
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687
A GD ++A++ Y KA+E P A AW NLG + QG+ AI ++
Sbjct: 78 AYYKQGDYDEAIE-----------YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Query: 688 EKAVSLDP 695
+KA+ LDP
Sbjct: 127 QKALELDP 134
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 64/120 (53%)
Query: 48 LSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 107
L + +++ D++ + A++ +P AEA+ NLGN Y ++G EA+E Y+ A+ L P
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 108 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
+ + NL A GD ++A++ Y AL+ +P +LGN G DEA + Y
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 67/128 (52%)
Query: 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP 73
L + Y+ GDY+ A + + + + L + +++ D++ + A++ +P
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 74 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 133
AEA+ NLGN Y ++G EA+E Y+ A+ L P + + NL A GD ++A++ Y
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Query: 134 VTALQYNP 141
AL+ +P
Sbjct: 127 QKALELDP 134
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
AEA+ NLGN Y ++G EA+E Y+ A+ L P + + NL A GD ++A++ Y
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCV------RS-----DLGNLLKALGRLD 184
AL+ +P +LGN G DEA + Y RS +LGN G D
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 185 EA 186
EA
Sbjct: 121 EA 122
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 172 DLGNLLKALGRLDEAKNLHTE--NIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ 229
+LGN G DEA + + + P + + + Y ++ E+ + A++
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALEL 64
Query: 230 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 289
+P AEA+ NLGN Y ++G EA+E Y+ A+ L P + + NL A GD ++A++
Sbjct: 65 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124
Query: 290 AYVTALQYNP 299
Y AL+ +P
Sbjct: 125 YYQKALELDP 134
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
AEA+ NLGN Y ++G EA+E Y+ A+ L P + + NL A GD ++A++ Y
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 294 ALQYNP 299
AL+ +P
Sbjct: 61 ALELDP 66
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 11/123 (8%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A GD ++A++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE---- 64
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
Y KA+E P+ A AW NLG + QG+ AI +++KA+ LDPN +A NL
Sbjct: 65 -------YYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117
Query: 705 GNV 707
GN
Sbjct: 118 GNA 120
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 65/119 (54%)
Query: 40 NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENY 99
N+ L + +++ D++ + A++ +P AEA+ NLGN Y ++G EA+E Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 100 RHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALG 158
+ A+ L P+ + + NL A GD ++A++ Y AL+ +P+ + +LGN + G
Sbjct: 67 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 11/96 (11%)
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
+ NL A GD ++A++ Y KA+E P+ A AW NLG + QG+
Sbjct: 12 WYNLGNAYYKQGDYDEAIE-----------YYQKALELDPNNAEAWYNLGNAYYKQGDYD 60
Query: 682 LAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
AI +++KA+ LDPN +A+ NLGN + +D A
Sbjct: 61 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 96
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A GD ++A++ Y
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
AL+ +P+ +LGN G DEA + Y
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 100
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 11/117 (9%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
++ D++ + A++ +P AEA+ NLGN Y ++G EA+E Y+ A+ L P+ +
Sbjct: 20 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG 678
+ NL A GD ++A++ Y KA+E P+ A A NLG QG
Sbjct: 80 WYNLGNAYYKQGDYDEAIE-----------YYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277
E+ + A++ +P AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A
Sbjct: 27 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86
Query: 278 LVAAGDMEQAVQAYVTALQYNP 299
GD ++A++ Y AL+ +P
Sbjct: 87 YYKQGDYDEAIEYYQKALELDP 108
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%)
Query: 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP 73
L + Y+ GDY+ A + + + NN L + +++ D++ + A++ +P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 74 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 124
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + NL A G
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A GD ++A++ Y
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 294 ALQYNP 299
AL+ +P
Sbjct: 69 ALELDP 74
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A AW NLG + QG+ AI +++KA+ LDPN +A+ NLGN + +D A
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Query: 172 DLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVC-NYGG---RKPTTLESAHFSTLAI 227
+LGN G DEA + K + + NA N G ++ E+ + A+
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQ---KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 228 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 282
+ +P AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + NL A G
Sbjct: 71 ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 69/123 (56%), Gaps = 11/123 (8%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A GD ++A++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIE---- 64
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
Y KA+E P+ A AW NLG + QG+ AI +++KA+ L PN +A NL
Sbjct: 65 -------YYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNL 117
Query: 705 GNV 707
GN
Sbjct: 118 GNA 120
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 63/119 (52%)
Query: 40 NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENY 99
N+ L + +++ D++ + A++ P AEA+ NLGN Y ++G EA+E Y
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 100 RHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALG 158
+ A+ L P+ + + NL A GD ++A++ Y AL+ P+ + +LGN + G
Sbjct: 67 QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A GD ++A++ Y
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
AL+ P+ +LGN G DEA + Y
Sbjct: 69 ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 100
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
Query: 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE 679
+ + NL A GD ++A++ Y KA+E P+ A AW NLG + QG+
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIE-----------YYQKALELYPNNAEAWYNLGNAYYKQGD 58
Query: 680 IWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
AI +++KA+ L PN +A+ NLGN + +D A
Sbjct: 59 YDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEA 96
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 568 DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 627
D++ + A++ P AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL
Sbjct: 26 DEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGN 85
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG 678
A GD ++A++ Y KA+E P+ A A NLG QG
Sbjct: 86 AYYKQGDYDEAIE-----------YYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%)
Query: 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277
E+ + A++ P AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A
Sbjct: 27 EAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNA 86
Query: 278 LVAAGDMEQAVQAYVTALQYNP 299
GD ++A++ Y AL+ P
Sbjct: 87 YYKQGDYDEAIEYYQKALELYP 108
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A GD ++A++ Y
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 294 ALQYNP 299
AL+ P
Sbjct: 69 ALELYP 74
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%)
Query: 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP 73
L + Y+ GDY+ A + + NN L + +++ D++ + A++ P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYP 74
Query: 74 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 119
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + NL A
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNA 120
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A AW NLG + QG+ AI +++KA+ L PN +A+ NLGN + +D A
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEA 62
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 172 DLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVC-NYGG---RKPTTLESAHFSTLAI 227
+LGN G DEA + K + + NA N G ++ E+ + A+
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQ---KALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 228 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277
+ P AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + NL A
Sbjct: 71 ELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNA 120
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%)
Query: 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP 73
L + Y+ GDY+ A + + NN L + +++ D++ + A++ P
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYP 108
Query: 74 LLAEAYSNLGNVYKERG 90
AEA NLGN +++G
Sbjct: 109 NNAEAKQNLGNAKQKQG 125
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 11/123 (8%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
AEA+ NLGN Y ++G Q+A+E Y+ A+ L P+ + NL A GD ++A++
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIE---- 64
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
Y KA+E P+ A AW G + QG+ AI ++KA+ LDPN A NL
Sbjct: 65 -------YYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNL 117
Query: 705 GNV 707
GN
Sbjct: 118 GNA 120
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 59/111 (53%)
Query: 48 LSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 107
L + +++ K+ + A++ +P A A+ NLGN Y ++G Q+A+E Y+ A+ L P
Sbjct: 15 LGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDP 74
Query: 108 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALG 158
+ + A GD ++A++ Y AL+ +P+ + +LGN + G
Sbjct: 75 NNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE 679
+ + NL A GD ++A++ Y KA+E P+ A AW NLG + QG+
Sbjct: 10 EAWKNLGNAYYKQGDYQKAIE-----------YYQKALELDPNNASAWYNLGNAYYKQGD 58
Query: 680 IWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
AI +++KA+ LDPN A+ GN + + +A
Sbjct: 59 YQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKA 96
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
AEA+ NLGN Y ++G Q+A+E Y+ A+ L P+ + NL A GD ++A++ Y
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 136 ALQYNPD 142
AL+ +P+
Sbjct: 69 ALELDPN 75
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
AEA+ NLGN Y ++G Q+A+E Y+ A+ L P+ + NL A GD ++A++ Y
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 294 ALQYNP 299
AL+ +P
Sbjct: 69 ALELDP 74
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 569 KSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 628
K+ + A++ +P A A+ NLGN Y ++G Q+A+E Y+ A+ L P+ + A
Sbjct: 27 KAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNA 86
Query: 629 LVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG 678
GD ++A++ Y KA+E P+ A A NLG QG
Sbjct: 87 YYKQGDYQKAIE-----------DYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A AW NLG + QG+ AI +++KA+ LDPN A+ NLGN + + +A
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKA 62
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 222 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 281
+ A++ +P A A+ NLGN Y ++G Q+A+E Y+ A+ L P+ + A
Sbjct: 31 YYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQ 90
Query: 282 GDMEQAVQAYVTALQYNP 299
GD ++A++ Y AL+ +P
Sbjct: 91 GDYQKAIEDYQKALELDP 108
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%)
Query: 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP 73
L + Y+ GDY+ A + + + NN L + +++ K+ + A++ +P
Sbjct: 15 LGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDP 74
Query: 74 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 124
A+A+ GN Y ++G Q+A+E+Y+ A+ L P+ NL A G
Sbjct: 75 NNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 222 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 281
+ A++ +P A+A+ GN Y ++G Q+A+E+Y+ A+ L P+ NL A
Sbjct: 65 YYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQ 124
Query: 282 G 282
G
Sbjct: 125 G 125
>pdb|2NOG|A Chain A, Sant Domain Structure Of Xenopus Remodeling Factor Iswi
pdb|2NOG|B Chain B, Sant Domain Structure Of Xenopus Remodeling Factor Iswi
Length = 173
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 46/52 (88%), Gaps = 1/52 (1%)
Query: 833 VQDFQFFPPRLFEILDQEIYYFRKTVGYKVPKNPELGSDATKAQKEEQKKID 884
VQDFQFFPPRLFE+L++EI Y+RKT+GYKVP+NP+L + A + QKEEQ KID
Sbjct: 19 VQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPDLPNSA-QVQKEEQLKID 69
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A GD ++A++ Y
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 136 ALQYNPDLYCVRSDLGNLLKALG 158
AL+ +P+ + +LGN + G
Sbjct: 69 ALELDPNNAEAKQNLGNAKQKQG 91
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
+ NL A GD ++A++ Y KA+E P+ A AW NLG + QG+
Sbjct: 12 WYNLGNAYYKQGDYDEAIE-----------YYQKALELDPNNAEAWYNLGNAYYKQGDYD 60
Query: 682 LAIHHFEKAVSLDPNFLDAYINLGNV 707
AI +++KA+ LDPN +A NLGN
Sbjct: 61 EAIEYYQKALELDPNNAEAKQNLGNA 86
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A GD ++A++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE---- 64
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG 678
Y KA+E P+ A A NLG QG
Sbjct: 65 -------YYQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A GD ++A++ Y
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 294 ALQYNP 299
AL+ +P
Sbjct: 69 ALELDP 74
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A AW NLG + QG+ AI +++KA+ LDPN +A+ NLGN + +D A
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 48 LSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 107
L + +++ D++ + A++ +P AEA+ NLGN Y ++G EA+E Y+ A+ L P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 108 DFIDGYINLAAALVAAG 124
+ + NL A G
Sbjct: 75 NNAEAKQNLGNAKQKQG 91
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 568 DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 627
D++ + A++ +P AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + NL
Sbjct: 26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85
Query: 628 ALVAAG 633
A G
Sbjct: 86 AKQKQG 91
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277
E+ + A++ +P AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + NL A
Sbjct: 27 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86
Query: 278 LVAAG 282
G
Sbjct: 87 KQKQG 91
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP 73
L + Y+ GDY+ A + + + NN L + +++ D++ + A++ +P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 74 LLAEAYSNLGNVYKERG 90
AEA NLGN +++G
Sbjct: 75 NNAEAKQNLGNAKQKQG 91
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 113 YINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
+ NL A GD ++A++ Y AL+ +P+ +LGN G DEA + Y
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
>pdb|2POK|A Chain A, Crystal Structure Of A M20 Family Metallo Peptidase From
Streptococcus Pneumoniae
pdb|2POK|B Chain B, Crystal Structure Of A M20 Family Metallo Peptidase From
Streptococcus Pneumoniae
Length = 481
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 96/213 (45%), Gaps = 13/213 (6%)
Query: 337 GLASAIESI---SANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNG 393
G +A+E + N+ + K++ A D+HS +GG V A L+ + L +G
Sbjct: 210 GTKNALEQLEISGGNKGIVTFDAKVKSADVDIHSS-YGGVVESAPWYLLQALQSLRAADG 268
Query: 394 KILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAI---DHPKLTKADKTQVLMSRWRYP 450
+IL+ +Y++V+ + E E + + I + P L + ++ L + P
Sbjct: 269 RILVEGLYEEVQEPNEREMALLETYGQRNPEEVSRIYGLELP-LLQEERMAFLKRFFFDP 327
Query: 451 SLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPN 510
+L++ GI+ + G G KT++P + K +R+VP P V + + L+ +N +
Sbjct: 328 ALNIEGIQSGYQGQGVKTILPAEASAKLEVRLVPGLEPHDVLEKIRKQLD-----KNGFD 382
Query: 511 KFKAYLLDSGKSWRTNPEHPNYVAAARATKYVY 543
K + Y S+R++ P + K Y
Sbjct: 383 KVELYYTLGEMSYRSDMSAPAILNVIELAKKFY 415
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
T AIK+NP A+ YSN Y + + Q AL++ ++L+P FI GY AAAL A D
Sbjct: 40 TEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKD 99
Query: 635 MEQAVQAYVTALQYNPSC 652
+A+ Y AL + SC
Sbjct: 100 YTKAMDVYQKALDLDSSC 117
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 207 CNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 266
C G P ++ H+ T AIK+NP A+ YSN Y + + Q AL++ ++L+P
Sbjct: 26 CFQKGDYPQAMK--HY-TEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 82
Query: 267 FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKK-EDGW 307
FI GY AAAL A D +A+ Y AL + K+ DG+
Sbjct: 83 FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGY 124
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 66 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 125
T AIK+NP A+ YSN Y + + Q AL++ ++L+P FI GY AAAL A D
Sbjct: 40 TEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKD 99
Query: 126 MEQAVQAYVTAL 137
+A+ Y AL
Sbjct: 100 YTKAMDVYQKAL 111
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 11/108 (10%)
Query: 614 LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCV 673
+ PD N GD QA++ Y A++ NP A +SN
Sbjct: 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-----------DAKLYSNRAAC 59
Query: 674 FNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLF 721
+ E LA+ E+ + L+P F+ Y L+ + + +A ++
Sbjct: 60 YTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVY 107
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
AEA+ NLGN Y ++G EA+E Y+ A+ L P + + NL A GD ++A++ Y
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 136 ALQYNP 141
AL+ +P
Sbjct: 63 ALELDP 68
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
AEA+ NLGN Y ++G EA+E Y+ A+ L P + + NL A GD ++A++ Y
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 294 ALQYNP 299
AL+ +P
Sbjct: 63 ALELDP 68
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
AEA+ NLGN Y ++G EA+E Y+ A+ L P + + NL A GD ++A++ Y
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 645 ALQYNP 650
AL+ +P
Sbjct: 63 ALELDP 68
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE 679
+ + NL A GD ++A++ Y KA+E P A AW NLG + QG+
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIE-----------YYQKALELDPRSAEAWYNLGNAYYKQGD 52
Query: 680 IWLAIHHFEKAVSLDP 695
AI +++KA+ LDP
Sbjct: 53 YDEAIEYYQKALELDP 68
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A AW NLG + QG+ AI +++KA+ LDP +A+ NLGN + +D A
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 56
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 48 LSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 107
L + +++ D++ + A++ +P AEA+ NLGN Y ++G EA+E Y+ A+ L P
Sbjct: 9 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 568 DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 616
D++ + A++ +P AEA+ NLGN Y ++G EA+E Y+ A+ L P
Sbjct: 20 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 265
E+ + A++ +P AEA+ NLGN Y ++G EA+E Y+ A+ L P
Sbjct: 21 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 111 DGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
+ + NL A GD ++A++ Y AL+ +P +LGN G DEA + Y
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 60
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A+K++P A YSN + + Q AL++ +RL FI GYI AA LVA +
Sbjct: 39 AVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWS 98
Query: 637 QAVQAYVTALQYNPS 651
+A +AY ALQ +PS
Sbjct: 99 KAQRAYEDALQVDPS 113
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A+K++P A YSN + + Q AL++ +RL FI GYI AA LVA +
Sbjct: 39 AVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWS 98
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLK 155
+A +AY ALQ +P R + N L+
Sbjct: 99 KAQRAYEDALQVDPSNEEAREGVRNCLR 126
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 211 GRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 270
G PT + H++ A+K++P A YSN + + Q AL++ +RL FI G
Sbjct: 27 GDYPTAMR--HYNE-AVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83
Query: 271 YINLAAALVAAGDMEQAVQAYVTALQYNP 299
YI AA LVA + +A +AY ALQ +P
Sbjct: 84 YIRKAACLVAMREWSKAQRAYEDALQVDP 112
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 642 YVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAY 701
Y TA+++ Y +A++ P+ A+ +SN E A+ + + LD F+ Y
Sbjct: 29 YPTAMRH----YNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84
Query: 702 INLGNVLKEARIFDRANTLF 721
I L R + +A +
Sbjct: 85 IRKAACLVAMREWSKAQRAY 104
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 578 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 637
+K +P E LG Y + G +A+E+ + V L + Y L +A M
Sbjct: 32 LKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF----MID 87
Query: 638 AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697
QA + ALQ +AI +A A+ LG V+++ GE AI +EK +S+ P F
Sbjct: 88 EKQAAIDALQ-------RAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF 140
Query: 698 LDAYINLG 705
+ AY ++G
Sbjct: 141 IRAYQSIG 148
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 38 ETNNTGVLLLLSSIHFQCRKLDKSAHFSTL--AIKQNPLLAEAYSNLGNVYKERGQLQEA 95
+T + +L S +F +K A L AI N + A+AY LG VY G+ +A
Sbjct: 69 DTTSAEAYYILGSANFMID--EKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKA 126
Query: 96 LENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 133
+E Y + +KP FI Y ++ A G ++AV+ +
Sbjct: 127 IEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
AI N + A+AY LG VY G+ +A+E Y + +KP FI Y ++ A G +
Sbjct: 99 AIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158
Query: 286 QAVQAY 291
+AV+ +
Sbjct: 159 EAVKYF 164
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
AI N + A+AY LG VY G+ +A+E Y + +KP FI Y ++ A G +
Sbjct: 99 AIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158
Query: 637 QAVQAY 642
+AV+ +
Sbjct: 159 EAVKYF 164
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 64/152 (42%)
Query: 12 LELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ 71
+++ ++ GD++ A R ++ + + NN LL L + + + +
Sbjct: 9 MDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL 68
Query: 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 131
+ AEAY LG+ + Q A++ + A+ L + D Y L + G+ ++A++
Sbjct: 69 DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIE 128
Query: 132 AYVTALQYNPDLYCVRSDLGNLLKALGRLDEA 163
AY + P +G + G DEA
Sbjct: 129 AYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
AEAY LG+ + Q A++ + A+ L + D Y L + G+ ++A++AY
Sbjct: 73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE- 131
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687
K I +P F A+ ++G + +G A+ +F
Sbjct: 132 ----------KTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
AEAY LG+ + Q A++ + A+ L + D Y L + G+ ++A++AY
Sbjct: 73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEK 132
Query: 294 ALQYNP 299
+ P
Sbjct: 133 TISIKP 138
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 7/209 (3%)
Query: 77 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 136
E + LG GQL +AL + AV PD Y A +A G + A+
Sbjct: 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86
Query: 137 LQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKP 196
+Q D R G+LL G+LDEA+D D +LK+ +E K ++ IK
Sbjct: 87 IQLKMDFTAARLQRGHLLLKQGKLDEAED------DFKKVLKSNPSENEEKEAQSQLIKS 140
Query: 197 VTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALEN 256
M+ + N G T A + ++ AE + + G+ ++A+ +
Sbjct: 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKI-LEVCVWDAELRELRAECFIKEGEPRKAISD 199
Query: 257 YRHAVRLKPDFIDGYINLAAALVAAGDME 285
+ A +LK D + + ++ GD E
Sbjct: 200 LKAASKLKNDNTEAFYKISTLYYQLGDHE 228
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 110 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEA------ 163
++ ++ L L+AAG + A+ + A+ +PD Y + A+G+ A
Sbjct: 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 85
Query: 164 -----KDLYCVRSDLGNLLKALGRLDEAKN 188
D R G+LL G+LDEA++
Sbjct: 86 VIQLKMDFTAARLQRGHLLLKQGKLDEAED 115
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 11/111 (9%)
Query: 586 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 645
E + LG GQL +AL + AV PD Y A +A G + A+
Sbjct: 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAAL------ 80
Query: 646 LQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
P K I+ + DF A G + QG++ A F+K + +P+
Sbjct: 81 ----PDL-TKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 95/233 (40%), Gaps = 15/233 (6%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A++Q+P EA+ LG E Q A+ R + LKPD + LA +
Sbjct: 90 AVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 149
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSD-----LGNLLKALGR 182
QA + L+Y P + + G + L + SD + L A R
Sbjct: 150 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 209
Query: 183 LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242
LD +I P ++ ++ N G ++ + L+++ N L ++ LG
Sbjct: 210 LDPT------SIDP-DVQCGLGVLFNLSGEYDKAVD-CFTAALSVRPNDYLL--WNKLGA 259
Query: 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
Q +EA+ YR A+ L+P +I NL + + G +AV+ ++ AL
Sbjct: 260 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 312
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 603 EALENYRHAVRLKPDFIDGYINLAAALV--AAGDMEQAVQAYVTALQYNPSCYLKAIETR 660
E E + AVRL P ID + ++ +G+ ++AV C+ A+ R
Sbjct: 199 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV-----------DCFTAALSVR 247
Query: 661 PDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLG 705
P+ + W+ LG + A+ + +A+ L P ++ + NLG
Sbjct: 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 292
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 43 GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHA 102
GVL LS + DK+ T A+ P ++ LG Q +EA+ YR A
Sbjct: 224 GVLFNLSG------EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 277
Query: 103 VRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 137
+ L+P +I NL + + G +AV+ ++ AL
Sbjct: 278 LELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 312
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 568 DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 627
DK+ T A+ P ++ LG Q +EA+ YR A+ L+P +I NL
Sbjct: 234 DKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGI 293
Query: 628 ALVAAGDMEQAVQAYVTAL 646
+ + G +AV+ ++ AL
Sbjct: 294 SCINLGAHREAVEHFLEAL 312
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 60/173 (34%), Gaps = 42/173 (24%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++Q+P EA+ LG E Q A+ R + LKPD + LA +
Sbjct: 90 AVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 149
Query: 637 QAVQAYVTALQYNPS--------------------------------------CYLKAIE 658
QA + L+Y P+ +L A+
Sbjct: 150 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 209
Query: 659 TRP---DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708
P D V LG +FN GE A+ F A+S+ PN + LG L
Sbjct: 210 LDPTSIDPDVQ-CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL 261
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
A++Q+P EA+ LG E Q A+ R + LKPD + LA +
Sbjct: 90 AVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 149
Query: 286 QAVQAYVTALQYNP 299
QA + L+Y P
Sbjct: 150 QACEILRDWLRYTP 163
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 95/233 (40%), Gaps = 15/233 (6%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A++Q+P EA+ LG E Q A+ R + LKPD + LA +
Sbjct: 50 AVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 109
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSD-----LGNLLKALGR 182
QA + L+Y P + + G + L + SD + L A R
Sbjct: 110 QACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 169
Query: 183 LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242
LD +I P ++ ++ N G ++ + L+++ N L ++ LG
Sbjct: 170 LDPT------SIDP-DVQCGLGVLFNLSGEYDKAVD-CFTAALSVRPNDYLL--WNKLGA 219
Query: 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
Q +EA+ YR A+ L+P +I NL + + G +AV+ ++ AL
Sbjct: 220 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 272
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 603 EALENYRHAVRLKPDFIDGYINLAAALV--AAGDMEQAVQAYVTALQYNPSCYLKAIETR 660
E E + AVRL P ID + ++ +G+ ++AV C+ A+ R
Sbjct: 159 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV-----------DCFTAALSVR 207
Query: 661 PDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLG 705
P+ + W+ LG + A+ + +A+ L P ++ + NLG
Sbjct: 208 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 252
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 43 GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHA 102
GVL LS + DK+ T A+ P ++ LG Q +EA+ YR A
Sbjct: 184 GVLFNLSG------EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 237
Query: 103 VRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 137
+ L+P +I NL + + G +AV+ ++ AL
Sbjct: 238 LELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 272
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 568 DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 627
DK+ T A+ P ++ LG Q +EA+ YR A+ L+P +I NL
Sbjct: 194 DKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGI 253
Query: 628 ALVAAGDMEQAVQAYVTAL 646
+ + G +AV+ ++ AL
Sbjct: 254 SCINLGAHREAVEHFLEAL 272
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 60/173 (34%), Gaps = 42/173 (24%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++Q+P EA+ LG E Q A+ R + LKPD + LA +
Sbjct: 50 AVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 109
Query: 637 QAVQAYVTALQYNPS--------------------------------------CYLKAIE 658
QA + L+Y P+ +L A+
Sbjct: 110 QACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 169
Query: 659 TRP---DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708
P D V LG +FN GE A+ F A+S+ PN + LG L
Sbjct: 170 LDPTSIDPDVQ-CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL 221
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
A++Q+P EA+ LG E Q A+ R + LKPD + LA +
Sbjct: 50 AVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 109
Query: 286 QAVQAYVTALQYNP 299
QA + L+Y P
Sbjct: 110 QACETLRDWLRYTP 123
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 95/233 (40%), Gaps = 15/233 (6%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A++Q+P EA+ LG E Q A+ R + LKPD + LA +
Sbjct: 41 AVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 100
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSD-----LGNLLKALGR 182
QA + L+Y P + + G + L + SD + L A R
Sbjct: 101 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 160
Query: 183 LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242
LD +I P ++ ++ N G ++ + L+++ N L ++ LG
Sbjct: 161 LDPT------SIDP-DVQCGLGVLFNLSGEYDKAVD-CFTAALSVRPNDYLL--WNKLGA 210
Query: 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
Q +EA+ YR A+ L+P +I NL + + G +AV+ ++ AL
Sbjct: 211 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 263
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 603 EALENYRHAVRLKPDFIDGYINLAAALV--AAGDMEQAVQAYVTALQYNPSCYLKAIETR 660
E E + AVRL P ID + ++ +G+ ++AV C+ A+ R
Sbjct: 150 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV-----------DCFTAALSVR 198
Query: 661 PDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLG 705
P+ + W+ LG + A+ + +A+ L P ++ + NLG
Sbjct: 199 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 243
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 43 GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHA 102
GVL LS + DK+ T A+ P ++ LG Q +EA+ YR A
Sbjct: 175 GVLFNLSG------EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 228
Query: 103 VRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 137
+ L+P +I NL + + G +AV+ ++ AL
Sbjct: 229 LELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 263
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 568 DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 627
DK+ T A+ P ++ LG Q +EA+ YR A+ L+P +I NL
Sbjct: 185 DKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGI 244
Query: 628 ALVAAGDMEQAVQAYVTAL 646
+ + G +AV+ ++ AL
Sbjct: 245 SCINLGAHREAVEHFLEAL 263
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 60/173 (34%), Gaps = 42/173 (24%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++Q+P EA+ LG E Q A+ R + LKPD + LA +
Sbjct: 41 AVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 100
Query: 637 QAVQAYVTALQYNPS--------------------------------------CYLKAIE 658
QA + L+Y P+ +L A+
Sbjct: 101 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 160
Query: 659 TRP---DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708
P D V LG +FN GE A+ F A+S+ PN + LG L
Sbjct: 161 LDPTSIDPDVQ-CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL 212
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
A++Q+P EA+ LG E Q A+ R + LKPD + LA +
Sbjct: 41 AVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 100
Query: 286 QAVQAYVTALQYNP 299
QA + L+Y P
Sbjct: 101 QACEILRDWLRYTP 114
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 95/233 (40%), Gaps = 15/233 (6%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A++Q+P EA+ LG E Q A+ R + LKPD + LA +
Sbjct: 50 AVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 109
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSD-----LGNLLKALGR 182
QA + L+Y P + + G + L + SD + L A R
Sbjct: 110 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 169
Query: 183 LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242
LD +I P ++ ++ N G ++ + L+++ N L ++ LG
Sbjct: 170 LDPT------SIDP-DVQCGLGVLFNLSGEYDKAVD-CFTAALSVRPNDYLL--WNKLGA 219
Query: 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
Q +EA+ YR A+ L+P +I NL + + G +AV+ ++ AL
Sbjct: 220 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 272
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 603 EALENYRHAVRLKPDFIDGYINLAAALV--AAGDMEQAVQAYVTALQYNPSCYLKAIETR 660
E E + AVRL P ID + ++ +G+ ++AV C+ A+ R
Sbjct: 159 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV-----------DCFTAALSVR 207
Query: 661 PDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLG 705
P+ + W+ LG + A+ + +A+ L P ++ + NLG
Sbjct: 208 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 252
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 43 GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHA 102
GVL LS + DK+ T A+ P ++ LG Q +EA+ YR A
Sbjct: 184 GVLFNLSG------EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 237
Query: 103 VRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 137
+ L+P +I NL + + G +AV+ ++ AL
Sbjct: 238 LELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 272
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 568 DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 627
DK+ T A+ P ++ LG Q +EA+ YR A+ L+P +I NL
Sbjct: 194 DKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGI 253
Query: 628 ALVAAGDMEQAVQAYVTAL 646
+ + G +AV+ ++ AL
Sbjct: 254 SCINLGAHREAVEHFLEAL 272
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 60/173 (34%), Gaps = 42/173 (24%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++Q+P EA+ LG E Q A+ R + LKPD + LA +
Sbjct: 50 AVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 109
Query: 637 QAVQAYVTALQYNPS--------------------------------------CYLKAIE 658
QA + L+Y P+ +L A+
Sbjct: 110 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 169
Query: 659 TRP---DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708
P D V LG +FN GE A+ F A+S+ PN + LG L
Sbjct: 170 LDPTSIDPDVQ-CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL 221
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
A++Q+P EA+ LG E Q A+ R + LKPD + LA +
Sbjct: 50 AVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 109
Query: 286 QAVQAYVTALQYNP 299
QA + L+Y P
Sbjct: 110 QACEILRDWLRYTP 123
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 84/209 (40%), Gaps = 7/209 (3%)
Query: 77 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 136
E + LG GQL +AL + AV PD Y A +A G + A+
Sbjct: 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKV 86
Query: 137 LQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKP 196
+Q D R G+LL G+LDEA+D D +LK+ +E K ++ IK
Sbjct: 87 IQLKXDFTAARLQRGHLLLKQGKLDEAED------DFKKVLKSNPSENEEKEAQSQLIKS 140
Query: 197 VTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALEN 256
+ + N G T A + ++ AE + + G+ ++A+ +
Sbjct: 141 DEXQRLRSQALNAFGSGDYTAAIAFLDKI-LEVCVWDAELRELRAECFIKEGEPRKAISD 199
Query: 257 YRHAVRLKPDFIDGYINLAAALVAAGDME 285
+ A +LK D + + ++ GD E
Sbjct: 200 LKAASKLKNDNTEAFYKISTLYYQLGDHE 228
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 11/111 (9%)
Query: 586 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 645
E + LG GQL +AL + AV PD Y A +A G + A+
Sbjct: 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAAL------ 80
Query: 646 LQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
P K I+ + DF A G + QG++ A F+K + +P+
Sbjct: 81 ----PDL-TKVIQLKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 110 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEA------ 163
++ ++ L L+AAG + A+ + A+ +PD Y + A G+ A
Sbjct: 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTK 85
Query: 164 -----KDLYCVRSDLGNLLKALGRLDEAKN 188
D R G+LL G+LDEA++
Sbjct: 86 VIQLKXDFTAARLQRGHLLLKQGKLDEAED 115
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 95/233 (40%), Gaps = 15/233 (6%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A++Q+P EA+ LG E Q A+ R + LKPD + LA +
Sbjct: 27 AVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 86
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSD-----LGNLLKALGR 182
QA + L+Y P + + G + L + SD + L A R
Sbjct: 87 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 146
Query: 183 LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242
LD +I P ++ ++ N G ++ + L+++ N L ++ LG
Sbjct: 147 LDPT------SIDP-DVQCGLGVLFNLSGEYDKAVD-CFTAALSVRPNDYLL--WNKLGA 196
Query: 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
Q +EA+ YR A+ L+P +I NL + + G +AV+ ++ AL
Sbjct: 197 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 249
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 603 EALENYRHAVRLKPDFIDGYINLAAALV--AAGDMEQAVQAYVTALQYNPSCYLKAIETR 660
E E + AVRL P ID + ++ +G+ ++AV C+ A+ R
Sbjct: 136 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV-----------DCFTAALSVR 184
Query: 661 PDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLG 705
P+ + W+ LG + A+ + +A+ L P ++ + NLG
Sbjct: 185 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 229
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 43 GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHA 102
GVL LS + DK+ T A+ P ++ LG Q +EA+ YR A
Sbjct: 161 GVLFNLSG------EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 214
Query: 103 VRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 137
+ L+P +I NL + + G +AV+ ++ AL
Sbjct: 215 LELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 249
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 568 DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 627
DK+ T A+ P ++ LG Q +EA+ YR A+ L+P +I NL
Sbjct: 171 DKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGI 230
Query: 628 ALVAAGDMEQAVQAYVTAL 646
+ + G +AV+ ++ AL
Sbjct: 231 SCINLGAHREAVEHFLEAL 249
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 60/173 (34%), Gaps = 42/173 (24%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++Q+P EA+ LG E Q A+ R + LKPD + LA +
Sbjct: 27 AVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 86
Query: 637 QAVQAYVTALQYNPS--------------------------------------CYLKAIE 658
QA + L+Y P+ +L A+
Sbjct: 87 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 146
Query: 659 TRP---DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708
P D V LG +FN GE A+ F A+S+ PN + LG L
Sbjct: 147 LDPTSIDPDVQ-CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL 198
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
A++Q+P EA+ LG E Q A+ R + LKPD + LA +
Sbjct: 27 AVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 86
Query: 286 QAVQAYVTALQYNP 299
QA + L+Y P
Sbjct: 87 QACEILRDWLRYTP 100
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 102/242 (42%), Gaps = 30/242 (12%)
Query: 64 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 123
F AI Q+P AEA+ LG E Q A+ + + L+P+ + + LA +
Sbjct: 87 FMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT 146
Query: 124 GDMEQAVQAYVTALQYNPDL-YCVRSDLGN--LLKALGR-------LDEAKDLYCVRSDL 173
+ A +A ++ NP Y V++ G+ L + + + L+ K+LY
Sbjct: 147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL----- 201
Query: 174 GNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLL 233
EA + + + I P ++ ++ + G +++ + A+ P
Sbjct: 202 -----------EAAHQNGDMIDP-DLQTGLGVLFHLSGEFNRAIDAFN---AALTVRPED 246
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
++ LG + +EA+E Y A+ ++P FI NL + + G +AV ++T
Sbjct: 247 YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLT 306
Query: 294 AL 295
AL
Sbjct: 307 AL 308
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 80 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 139
+ LG ++ G+ A++ + A+ ++P+ + L A L E+AV+AY AL+
Sbjct: 217 TGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI 276
Query: 140 NPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKN 188
P R +LG LG EA + N L AL +++N
Sbjct: 277 QPGFIRSRYNLGISCINLGAYREA---------VSNFLTALSLQRKSRN 316
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 25/176 (14%)
Query: 521 KSW-RTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIK 579
K+W + NP++ V + + P LTR P+ + L+ A
Sbjct: 157 KNWIKQNPKYKYLVKNKKGS-------PGLTRRMSKSPV----DSSVLEGVKELYLEAAH 205
Query: 580 QNPLLAEA--YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 637
QN + + + LG ++ G+ A++ + A+ ++P+ + L A L E+
Sbjct: 206 QNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEE 265
Query: 638 AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693
AV+AY AL+ P I +R + ++ NLG A+ +F A+SL
Sbjct: 266 AVEAYTRALEIQPGF----IRSRYNLGISCINLGAYRE-------AVSNFLTALSL 310
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 85/240 (35%), Gaps = 66/240 (27%)
Query: 521 KSWRT-NPEHPNYVAAARATK-YVYNVE------PDLTREG------GSIPITLTFECRK 566
++W + N E N V + + K Y ++ E P EG G +P+T+ F
Sbjct: 32 RNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILF---- 87
Query: 567 LDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLA 626
AI Q+P AEA+ LG E Q A+ + + L+P+ + + LA
Sbjct: 88 -------MEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALA 140
Query: 627 AALVAAGDMEQAVQAYVTALQYNP---------------------------------SCY 653
+ + A +A ++ NP Y
Sbjct: 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELY 200
Query: 654 LKAIETR-----PDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708
L+A PD + LG +F+ GE AI F A+++ P + LG L
Sbjct: 201 LEAAHQNGDMIDPDLQ---TGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATL 257
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 211 GRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 270
G P T+ F AI Q+P AEA+ LG E Q A+ + + L+P+ +
Sbjct: 79 GDLPVTI---LFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKA 135
Query: 271 YINLAAALVAAGDMEQAVQAYVTALQYNPLLK 302
+ LA + + A +A ++ NP K
Sbjct: 136 LMALAVSYTNTSHQQDACEALKNWIKQNPKYK 167
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 80/210 (38%), Gaps = 30/210 (14%)
Query: 514 AYLLDSG--KSWR----TNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKL 567
A L D G ++W+ T E+ N AA A + ++P+ + ++ ++ T +
Sbjct: 91 AILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQ 150
Query: 568 DKSAHFSTLAIKQNP----LLAEAYSNLGNVYK------ERGQLQEALENYRHAVRLKPD 617
D IKQNP L+ + G + + L+ E Y A D
Sbjct: 151 DACEALKNW-IKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD 209
Query: 618 FIDGYINLAAALV--AAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFN 675
ID + ++ +G+ +A+ A+ AL P Y W+ LG
Sbjct: 210 MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY-----------SLWNRLGATLA 258
Query: 676 AQGEIWLAIHHFEKAVSLDPNFLDAYINLG 705
A+ + +A+ + P F+ + NLG
Sbjct: 259 NGDRSEEAVEAYTRALEIQPGFIRSRYNLG 288
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 563 ECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 622
ECR L +A ++ NP A+ +++LG +Y A N R AV L+PD +
Sbjct: 156 ECRTLLHAA------LEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW 209
Query: 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLG 671
L A L ++A+ AY AL NP Y++ + + AV++SN+
Sbjct: 210 NKLGATLANGNRPQEALDAYNRALDINPG-YVRVMY---NMAVSYSNMS 254
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 54 QCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 113
+CR L +A ++ NP A+ +++LG +Y A N R AV L+PD +
Sbjct: 156 ECRTLLHAA------LEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW 209
Query: 114 INLAAALVAAGDMEQAVQAYVTALQYNP 141
L A L ++A+ AY AL NP
Sbjct: 210 NKLGATLANGNRPQEALDAYNRALDINP 237
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
A++ NP A+ +++LG +Y A N R AV L+PD + L A L +
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 286 QAVQAYVTALQYNP 299
+A+ AY AL NP
Sbjct: 224 EALDAYNRALDINP 237
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 655 KAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLG 705
+A+E RPD A W+ LG A+ + +A+ ++P ++ N+
Sbjct: 197 RAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 563 ECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 622
ECR L +A ++ NP A+ +++LG +Y A N R AV L+PD +
Sbjct: 156 ECRTLLHAA------LEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW 209
Query: 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLG 671
L A L ++A+ AY AL NP Y++ + + AV++SN+
Sbjct: 210 NKLGATLANGNRPQEALDAYNRALDINPG-YVRVMY---NMAVSYSNMS 254
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 54 QCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 113
+CR L +A ++ NP A+ +++LG +Y A N R AV L+PD +
Sbjct: 156 ECRTLLHAA------LEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW 209
Query: 114 INLAAALVAAGDMEQAVQAYVTALQYNP 141
L A L ++A+ AY AL NP
Sbjct: 210 NKLGATLANGNRPQEALDAYNRALDINP 237
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
A++ NP A+ +++LG +Y A N R AV L+PD + L A L +
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 286 QAVQAYVTALQYNP 299
+A+ AY AL NP
Sbjct: 224 EALDAYNRALDINP 237
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 655 KAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLG 705
+A+E RPD A W+ LG A+ + +A+ ++P ++ N+
Sbjct: 197 RAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
AIK +P YSN Y ++G Q+A E+ V LKPD+ GY AAAL E
Sbjct: 30 AIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 89
Query: 286 QAVQAYVTALQY---NPLLKK 303
+A + Y L++ NP LK+
Sbjct: 90 EAKRTYEEGLKHEANNPQLKE 110
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 58 LDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLA 117
+D + + AIK +P YSN Y ++G Q+A E+ V LKPD+ GY A
Sbjct: 20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA 79
Query: 118 AALVAAGDMEQAVQAYVTALQY---NPDL 143
AAL E+A + Y L++ NP L
Sbjct: 80 AALEFLNRFEEAKRTYEEGLKHEANNPQL 108
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%)
Query: 567 LDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLA 626
+D + + AIK +P YSN Y ++G Q+A E+ V LKPD+ GY A
Sbjct: 20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA 79
Query: 627 AALVAAGDMEQAVQAYVTALQY 648
AAL E+A + Y L++
Sbjct: 80 AALEFLNRFEEAKRTYEEGLKH 101
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%)
Query: 83 GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD 142
GN G + +AL+ Y A++L P Y N +AA GD ++A + + PD
Sbjct: 11 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70
Query: 143 LYCVRSDLGNLLKALGRLDEAKDLY 167
S L+ L R +EAK Y
Sbjct: 71 WGKGYSRKAAALEFLNRFEEAKRTY 95
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 592 GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS 651
GN G + +AL+ Y A++L P Y N +AA GD ++A Y
Sbjct: 11 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKA---------YEDG 61
Query: 652 CYLKAIETRPDFAVAWS 668
C K ++ +PD+ +S
Sbjct: 62 C--KTVDLKPDWGKGYS 76
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 241 GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPL 300
GN G + +AL+ Y A++L P Y N +AA GD ++A + + P
Sbjct: 11 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70
Query: 301 LKKEDGWNTEPFVLDFERR 319
K G++ + L+F R
Sbjct: 71 WGK--GYSRKAAALEFLNR 87
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA----- 122
A+K+NP EA L + G + ALEN + V P ++ GY+ L+ A VA
Sbjct: 31 ALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQA 90
Query: 123 ------AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEA----------KDL 166
G +EQA+ A + NP + G + LG D+A +D
Sbjct: 91 EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT 150
Query: 167 YCVRSDLGNLLKALGRLDEA 186
+RS L L ++GRLDEA
Sbjct: 151 PEIRSALAELYLSMGRLDEA 170
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 73/191 (38%), Gaps = 42/191 (21%)
Query: 557 PITLTFECRKLDKSAHFSTL---AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR 613
P+ L + L + TL A+K+NP EA L + G + ALEN + V
Sbjct: 8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA 67
Query: 614 LKPDFIDGYINLAAALVA-----------AGDMEQAVQAYVTALQYNP------------ 650
P ++ GY+ L+ A VA G +EQA+ A + NP
Sbjct: 68 RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLV 127
Query: 651 ----------SCYLK---AIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697
LK A+E P+ A + L + + G + A+ + KA+ P
Sbjct: 128 YALLGERDKAEASLKQALALEDTPEIRSALAEL---YLSMGRLDEALAQYAKALEQAPKD 184
Query: 698 LDAYINLGNVL 708
LD + + L
Sbjct: 185 LDLRVRYASAL 195
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 66 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 124
LA++ P E S L +Y G+L EAL Y A+ P +D + A+AL+ G
Sbjct: 144 ALALEDTP---EIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKG 199
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 633
LA++ P E S L +Y G+L EAL Y A+ P +D + A+AL+ G
Sbjct: 144 ALALEDTP---EIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKG 199
>pdb|2Y9Y|A Chain A, Chromatin Remodeling Factor Isw1a(Del_atpase)
Length = 374
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 793 IEPPKRERKANYAVDAYFKEALRTSEXXXXXXXXXXXXXIVQDFQFFPPRLFEILDQEIY 852
+ P KRERK NY++D Y+K+ L T + Q PP+L + ++E
Sbjct: 3 LNPTKRERKENYSIDNYYKDVLNTGRSSTPSHPRMPKPHVFHSHQLQPPQLQVLYEKERM 62
Query: 853 YFRKTVGYKVPKNPELGSDATKAQKEEQKK 882
+ K GY VP ++ + K +E++K
Sbjct: 63 WTAKKTGY-VPTMDDVKAAYGKISDQEEQK 91
>pdb|2Y9Z|A Chain A, Chromatin Remodeling Factor Isw1a(Del_atpase) In Dna
Complex
Length = 374
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 793 IEPPKRERKANYAVDAYFKEALRTSEXXXXXXXXXXXXXIVQDFQFFPPRLFEILDQEIY 852
+ P KRERK NY++D Y+K+ L T + Q PP+L + ++E
Sbjct: 3 LNPTKRERKENYSIDNYYKDVLNTGRSSTPSHPRMPKPHVFHSHQLQPPQLKVLYEKERM 62
Query: 853 YFRKTVGYKVP 863
+ K GY VP
Sbjct: 63 WTAKKTGY-VP 72
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 62 AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 121
A L+ Q A N GN + EA++ Y++A+ L P+ Y N++A +
Sbjct: 11 AQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYI 70
Query: 122 AAGDMEQAVQAYVTALQYNPD 142
+ GD+E+ ++ AL+ PD
Sbjct: 71 STGDLEKVIEFTTKALEIKPD 91
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 571 AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 630
A L+ Q A N GN + EA++ Y++A+ L P+ Y N++A +
Sbjct: 11 AQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYI 70
Query: 631 AAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEI 680
+ GD+E+ ++ AL+ P + KA+ R A A +LG +A ++
Sbjct: 71 STGDLEKVIEFTTKALEIKPD-HSKALLRR---ASANESLGNFTDAMFDL 116
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%)
Query: 220 AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 279
A L+ Q A N GN + EA++ Y++A+ L P+ Y N++A +
Sbjct: 11 AQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYI 70
Query: 280 AAGDMEQAVQAYVTALQYNP 299
+ GD+E+ ++ AL+ P
Sbjct: 71 STGDLEKVIEFTTKALEIKP 90
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 22/204 (10%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A+ NP Y + G +Y + A E+++ A L P+ + YI LA L G
Sbjct: 302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFT 361
Query: 128 QAVQAYV--TALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDE 185
++ +A+ T L++ P L V + +L G D A Y + RL+E
Sbjct: 362 ES-EAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK----------RLEE 409
Query: 186 AKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFS------TLAIKQNPLLAEAYSN 239
+ I P+ K I+ + PT L+ F+ T A + +P +A
Sbjct: 410 VQEKIHVGIGPLIGKA--TILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIG 467
Query: 240 LGNVYKERGQLQEALENYRHAVRL 263
L + + ++ EA+E + + L
Sbjct: 468 LAQLKLQMEKIDEAIELFEDSAIL 491
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%)
Query: 53 FQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 112
F + +++ + AI+ +P YSN+ Y G L++ +E A+ +KPD
Sbjct: 36 FTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKA 95
Query: 113 YINLAAALVAAGDMEQAV 130
+ A+A + G+ A+
Sbjct: 96 LLRRASANESLGNFTDAM 113
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
F + +++ + AI+ +P YSN+ Y G L++ +E A+ +KPD
Sbjct: 36 FTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKA 95
Query: 622 YINLAAALVAAGDMEQAV 639
+ A+A + G+ A+
Sbjct: 96 LLRRASANESLGNFTDAM 113
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277
E+ + AI+ +P YSN+ Y G L++ +E A+ +KPD + A+A
Sbjct: 43 EAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102
Query: 278 LVAAGDMEQAV 288
+ G+ A+
Sbjct: 103 NESLGNFTDAM 113
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 62 AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 121
A L+ Q A N GN + EA++ Y++A+ L P+ Y N++A +
Sbjct: 7 AQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYI 66
Query: 122 AAGDMEQAVQAYVTALQYNPD 142
+ GD+E+ ++ AL+ PD
Sbjct: 67 STGDLEKVIEFTTKALEIKPD 87
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 571 AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 630
A L+ Q A N GN + EA++ Y++A+ L P+ Y N++A +
Sbjct: 7 AQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYI 66
Query: 631 AAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEI 680
+ GD+E+ ++ AL+ P + KA+ R A A +LG +A ++
Sbjct: 67 STGDLEKVIEFTTKALEIKPD-HSKALLRR---ASANESLGNFTDAMFDL 112
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%)
Query: 220 AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 279
A L+ Q A N GN + EA++ Y++A+ L P+ Y N++A +
Sbjct: 7 AQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYI 66
Query: 280 AAGDMEQAVQAYVTALQYNP 299
+ GD+E+ ++ AL+ P
Sbjct: 67 STGDLEKVIEFTTKALEIKP 86
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 22/204 (10%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A+ NP Y + G +Y + A E+++ A L P+ + YI LA L G
Sbjct: 298 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFT 357
Query: 128 QAVQAYV--TALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDE 185
++ +A+ T L++ P L V + +L G D A Y + RL+E
Sbjct: 358 ES-EAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK----------RLEE 405
Query: 186 AKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFS------TLAIKQNPLLAEAYSN 239
+ I P+ K I+ + PT L+ F+ T A + +P +A
Sbjct: 406 VQEKIHVGIGPLIGKA--TILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIG 463
Query: 240 LGNVYKERGQLQEALENYRHAVRL 263
L + + ++ EA+E + + L
Sbjct: 464 LAQLKLQMEKIDEAIELFEDSAIL 487
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%)
Query: 53 FQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 112
F + +++ + AI+ +P YSN+ Y G L++ +E A+ +KPD
Sbjct: 32 FTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKA 91
Query: 113 YINLAAALVAAGDMEQAV 130
+ A+A + G+ A+
Sbjct: 92 LLRRASANESLGNFTDAM 109
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
F + +++ + AI+ +P YSN+ Y G L++ +E A+ +KPD
Sbjct: 32 FTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKA 91
Query: 622 YINLAAALVAAGDMEQAV 639
+ A+A + G+ A+
Sbjct: 92 LLRRASANESLGNFTDAM 109
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277
E+ + AI+ +P YSN+ Y G L++ +E A+ +KPD + A+A
Sbjct: 39 EAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 98
Query: 278 LVAAGDMEQAV 288
+ G+ A+
Sbjct: 99 NESLGNFTDAM 109
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 85/210 (40%), Gaps = 9/210 (4%)
Query: 77 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 136
E + LG GQL +AL + AV PD Y A +A G + A+
Sbjct: 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKV 63
Query: 137 LQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKP 196
+ D R G+LL G+LDEA+D D +LK+ E K ++ +K
Sbjct: 64 IALKXDFTAARLQRGHLLLKQGKLDEAED------DFKKVLKSNPSEQEEKEAESQLVKA 117
Query: 197 -VTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALE 255
++++ + + G T + F ++ AE + + G+ ++A+
Sbjct: 118 DEXQRLRSQALDAFDGADYTA--AITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 175
Query: 256 NYRHAVRLKPDFIDGYINLAAALVAAGDME 285
+ + A +LK D + + ++ GD E
Sbjct: 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHE 205
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 11/111 (9%)
Query: 586 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 645
E + LG GQL +AL + AV PD Y A +A G + A+
Sbjct: 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAAL------ 57
Query: 646 LQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
P K I + DF A G + QG++ A F+K + +P+
Sbjct: 58 ----PD-LTKVIALKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 103
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 110 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEA------ 163
++ ++ L L+AAG + A+ + A+ +PD Y + A G+ A
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTK 62
Query: 164 -----KDLYCVRSDLGNLLKALGRLDEAKN 188
D R G+LL G+LDEA++
Sbjct: 63 VIALKXDFTAARLQRGHLLLKQGKLDEAED 92
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 93/237 (39%), Gaps = 43/237 (18%)
Query: 83 GNVYKERGQLQEALENYRHAVRLKPDFIDGYIN-LAAALVAAGDMEQAVQAYVTALQYNP 141
GN + + Q EA+E+Y A L D Y+N AAA G+ E A+ A++
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELHKDIT--YLNNRAAAEYEKGEYETAISTLNDAVEQGR 69
Query: 142 DLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKV 201
++ R+D + K+ R+ A LG+L K + K+L + K+
Sbjct: 70 EM---RADYKVISKSFARIGNA------YHKLGDLKKTIEYYQ--KSLTEHRTADILTKL 118
Query: 202 QNA----------IVCNYGGRKPTTLESAHFSTLA------------IKQNPLLAEAYSN 239
+NA N + LE + T + IK+ P A YSN
Sbjct: 119 RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSN 178
Query: 240 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
+ EA+ + A+ P+F+ YI A A + AV+ Y +AL+
Sbjct: 179 RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI-------AVKEYASALE 228
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 14/123 (11%)
Query: 592 GNVYKERGQLQEALENYRHAVRLKPDFIDGYI-NLAAALVAAGDMEQAVQAYVTALQYNP 650
GN + + Q EA+E+Y A L D Y+ N AAA G+ E A+ A++
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELHKDIT--YLNNRAAAEYEKGEYETAISTLNDAVE--- 66
Query: 651 SCYLKAIETRPDFAV---AWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNV 707
+ E R D+ V +++ +G ++ G++ I +++K+++ + D L N
Sbjct: 67 ----QGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT-EHRTADILTKLRNA 121
Query: 708 LKE 710
KE
Sbjct: 122 EKE 124
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 66 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 125
T IK+ P A YSN + EA+ + A+ P+F+ YI A A +
Sbjct: 163 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI---- 218
Query: 126 MEQAVQAYVTALQ 138
AV+ Y +AL+
Sbjct: 219 ---AVKEYASALE 228
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
T IK+ P A YSN + EA+ + A+ P+F+ YI A A +
Sbjct: 163 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI---- 218
Query: 635 MEQAVQAYVTALQ 647
AV+ Y +AL+
Sbjct: 219 ---AVKEYASALE 228
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111
+ + + HF AI+ NP A + N Y + G A+++ A+ + P +
Sbjct: 22 QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK 81
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDL 150
Y + AL + +AV Y AL+ +PD +S+L
Sbjct: 82 AYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 633 GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
G+ + V+ + A+ + Y KAIE P AV + N ++ G A+ E+A+
Sbjct: 19 GNEQMKVENFEAAVHF----YGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74
Query: 693 LDPNFLDAYINLGNVL 708
+DP + AY +G L
Sbjct: 75 IDPAYSKAYGRMGLAL 90
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 567 LDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLA 626
+ + HF AI+ NP A + N Y + G A+++ A+ + P + Y +
Sbjct: 28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87
Query: 627 AALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNL 670
AL ++ +V A+ Y Y KA+E PD SNL
Sbjct: 88 LAL-------SSLNKHVEAVAY----YKKALELDPDNETYKSNL 120
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 16/116 (13%)
Query: 185 EAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESA-HFSTLAIKQNPLLAEAYSNLGNV 243
EA+ L TE + MKV+N E+A HF AI+ NP A + N
Sbjct: 11 EAERLKTEGNE--QMKVEN-------------FEAAVHFYGKAIELNPANAVYFCNRAAA 55
Query: 244 YKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
Y + G A+++ A+ + P + Y + AL + +AV Y AL+ +P
Sbjct: 56 YSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP 111
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 18/122 (14%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALEN-------YRHAVRLKPDFIDGYINLAAALVAAGD 634
PL +E S K G Q +EN Y A+ L P + N AAA G+
Sbjct: 2 PLGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN 61
Query: 635 MEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD 694
AVQ C +AI P ++ A+ +G ++ + A+ +++KA+ LD
Sbjct: 62 YAGAVQ----------DCE-RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD 110
Query: 695 PN 696
P+
Sbjct: 111 PD 112
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 104/267 (38%), Gaps = 65/267 (24%)
Query: 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID------GYINLAAALVAAGDMEQ 128
L+ YS LGN Y +ALE + H + L D NL L G+ ++
Sbjct: 44 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDE 103
Query: 129 AVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGR------ 182
A+ Q + D+ +D ++ EA+ LY +LGN+ A G+
Sbjct: 104 AI----VCCQRHLDISRELND---------KVGEARALY----NLGNVYHAKGKSFGCPG 146
Query: 183 --------------LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHF------ 222
L A +L+ EN+ VT A GR L + H+
Sbjct: 147 PQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQ----GRAFGNLGNTHYLLGNFR 202
Query: 223 -STLAIKQNPLLAE----------AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 271
+ +A +Q L+A+ AYSNLGN Y G+ + A E Y+ + L D
Sbjct: 203 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 262
Query: 272 INLAAALVAAGDMEQAVQAYVTALQYN 298
+ A + + G+ +Q Y A+ Y+
Sbjct: 263 VE-AQSCYSLGNTYTLLQDYEKAIDYH 288
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 78 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 137
AYSNLGN Y G+ + A E Y+ + L D + A + + G+ +Q Y A+
Sbjct: 227 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE-AQSCYSLGNTYTLLQDYEKAI 285
Query: 138 QYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIK 195
Y+ + +L + R+ E + + LGN ALG D+A + ++++
Sbjct: 286 DYHLKHLAIAQELKD------RIGEGRACW----SLGNAYTALGNHDQAMHFAEKHLE 333
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 587 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 646
AYSNLGN Y G+ + A E Y+ + L D + A + + G+ +Q Y A+
Sbjct: 227 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE-AQSCYSLGNTYTLLQDYEKAI 285
Query: 647 QYNPSCYLKAIETRPDFA---VAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693
Y+ A E + WS LG + A G A+H EK + +
Sbjct: 286 DYHLKHLAIAQELKDRIGEGRACWS-LGNAYTALGNHDQAMHFAEKHLEI 334
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 104/267 (38%), Gaps = 65/267 (24%)
Query: 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID------GYINLAAALVAAGDMEQ 128
L+ YS LGN Y +ALE + H + L D NL L G+ ++
Sbjct: 42 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDE 101
Query: 129 AVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGR------ 182
A+ Q + D+ +D ++ EA+ LY +LGN+ A G+
Sbjct: 102 AI----VCCQRHLDISRELND---------KVGEARALY----NLGNVYHAKGKSFGCPG 144
Query: 183 --------------LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHF------ 222
L A +L+ EN+ VT A GR L + H+
Sbjct: 145 PQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQ----GRAFGNLGNTHYLLGNFR 200
Query: 223 -STLAIKQNPLLAE----------AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 271
+ +A +Q L+A+ AYSNLGN Y G+ + A E Y+ + L D
Sbjct: 201 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 260
Query: 272 INLAAALVAAGDMEQAVQAYVTALQYN 298
+ A + + G+ +Q Y A+ Y+
Sbjct: 261 VE-AQSCYSLGNTYTLLQDYEKAIDYH 286
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 78 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 137
AYSNLGN Y G+ + A E Y+ + L D + A + + G+ +Q Y A+
Sbjct: 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE-AQSCYSLGNTYTLLQDYEKAI 283
Query: 138 QYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIK 195
Y+ + +L + R+ E + + LGN ALG D+A + ++++
Sbjct: 284 DYHLKHLAIAQELKD------RIGEGRACW----SLGNAYTALGNHDQAMHFAEKHLE 331
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 5/116 (4%)
Query: 587 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 646
AYSNLGN Y G+ + A E Y+ + L D + A + + G+ +Q Y A+
Sbjct: 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE-AQSCYSLGNTYTLLQDYEKAI 283
Query: 647 QYNPSCYLKAIETRPDFA---VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699
Y+ A E + WS LG + A G A+H EK + + D
Sbjct: 284 DYHLKHLAIAQELKDRIGEGRACWS-LGNAYTALGNHDQAMHFAEKHLEISREVGD 338
>pdb|1YA0|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Smg7
pdb|1YA0|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Smg7
Length = 497
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 81 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 140
+LG++ + R Q +A YRHA +L P Y LA + GD + Y ++
Sbjct: 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK 216
Query: 141 PDLYCVRSDLGNLL-KALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTM 199
++L L KAL DE K + V + +K G + +K+L E + P+
Sbjct: 217 FPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSL--EKLSPLRE 274
Query: 200 KVQ 202
K++
Sbjct: 275 KLE 277
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 590 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 649
+LG++ + R Q +A YRHA +L P Y LA + GD ++T + Y
Sbjct: 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD-------HLTTIFY- 208
Query: 650 PSCYLKAIETRPDFAVAWSNL 670
Y ++I + F A +NL
Sbjct: 209 ---YCRSIAVKFPFPAASTNL 226
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 239 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
+LG++ + R Q +A YRHA +L P Y LA + GD + Y ++
Sbjct: 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 633 GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
GD E+A +A+ KAIE + A+ + N + ++ E+ A+ ++KA+
Sbjct: 37 GDYEKAAEAFT-----------KAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE 85
Query: 693 LDPNFLDAYINLGNVLKEARIFDRANTLF 721
LD + AY GNV ++ A +F
Sbjct: 86 LDSSAATAYYGAGNVYVVKEMYKEAKDMF 114
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 20/197 (10%)
Query: 88 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVR 147
E G ++A E + A+ + YIN A L + ++E+A+ Y AL+ +
Sbjct: 35 EFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAY 94
Query: 148 SDLGNLLKALGRLDEAKDLY--CVRSDL--GNLLKALGRLDEAKNLHTENIKPVTMKVQN 203
GN+ EAKD++ +R+ + G+L LG + + E K +Q
Sbjct: 95 YGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTV----LVKLEQPKLALPYLQR 150
Query: 204 AIVCNYGGRKP-----------TTLESAHFSTLAI-KQNPLLAEAYSNLGNVYKERGQLQ 251
A+ N + L+ A A+ +Q+P A+A+ N G Y + +
Sbjct: 151 AVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENRE 210
Query: 252 EALENYRHAVRLKPDFI 268
+ALE A+ ++PD +
Sbjct: 211 KALEMLDKAIDIQPDHM 227
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 22/194 (11%)
Query: 517 LDSGKSWRTNPEHPNYVAAARA-TKYVYNVEPDLTREGGSIP----ITLTFECRKLDKSA 571
+ G+ E +Y AA A TK + + D +IP L +L+++
Sbjct: 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED------AIPYINFANLLSSVNELERAL 77
Query: 572 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 631
F A++ + A AY GNVY + +EA + + A+R + D + L LV
Sbjct: 78 AFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV- 136
Query: 632 AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691
+EQ A + LQ +A+E + A G +G + A+ F
Sbjct: 137 --KLEQPKLA-LPYLQ-------RAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVT 186
Query: 692 SLDPNFLDAYINLG 705
DP DA+ N G
Sbjct: 187 EQDPGHADAFYNAG 200
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 597 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKA 656
E G ++A E + A+ + YIN A L + ++E+A+ Y AL+ + S
Sbjct: 35 EFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA---- 90
Query: 657 IETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708
A A+ G V+ + A FEKA+ D + LG VL
Sbjct: 91 -------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVL 135
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
A A + GN + + +A++ Y A+ LK D + Y NL+A V+ GD+++ V+
Sbjct: 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTK 64
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEA 163
AL+ PD V + + LG+ +A
Sbjct: 65 ALELKPDYSKVLLRRASANEGLGKFADA 92
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 13/118 (11%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
A A + GN + + +A++ Y A+ LK D + Y NL+A V+ GD+++ V+
Sbjct: 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTK 64
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYI 702
AL+ P Y K + R A A LG +A ++ + +SL+ +F DA I
Sbjct: 65 ALELKPD-YSKVLLRR---ASANEGLGKFADAMFDLSV--------LSLNGDFNDASI 110
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
A A + GN + + +A++ Y A+ LK D + Y NL+A V+ GD+++ V+
Sbjct: 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTK 64
Query: 294 ALQYNP 299
AL+ P
Sbjct: 65 ALELKP 70
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 53 FQCRKLDKSAHFST--LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 110
F+ +K D + + L +K++P+ YSNL Y G L++ +E A+ LKPD+
Sbjct: 17 FRNKKYDDAIKYYNWALELKEDPVF---YSNLSACYVSVGDLKKVVEMSTKALELKPDYS 73
Query: 111 DGYINLAAALVAAGDMEQAV 130
+ A+A G A+
Sbjct: 74 KVLLRRASANEGLGKFADAM 93
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 562 FECRKLDKSAHFST--LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 619
F +K D + + L +K++P+ YSNL Y G L++ +E A+ LKPD+
Sbjct: 17 FRNKKYDDAIKYYNWALELKEDPVF---YSNLSACYVSVGDLKKVVEMSTKALELKPDYS 73
Query: 620 DGYINLAAALVAAGDMEQAV 639
+ A+A G A+
Sbjct: 74 KVLLRRASANEGLGKFADAM 93
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 225 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 284
L +K++P+ YSNL Y G L++ +E A+ LKPD+ + A+A G
Sbjct: 33 LELKEDPVF---YSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKF 89
Query: 285 EQAV 288
A+
Sbjct: 90 ADAM 93
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111
+F+ + + + F + AI+ NP A Y N Y AL + A+ L +I
Sbjct: 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK 75
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNP 141
GY AA+ +A G A++ Y T ++ P
Sbjct: 76 GYYRRAASNMALGKFRAALRDYETVVKVKP 105
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
F+ + + + F + AI+ NP A Y N Y AL + A+ L +I G
Sbjct: 17 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG 76
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNP 650
Y AA+ +A G A++ Y T ++ P
Sbjct: 77 YYRRAASNMALGKFRAALRDYETVVKVKP 105
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%)
Query: 222 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 281
F + AI+ NP A Y N Y AL + A+ L +I GY AA+ +A
Sbjct: 28 FYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87
Query: 282 GDMEQAVQAYVTALQYNP 299
G A++ Y T ++ P
Sbjct: 88 GKFRAALRDYETVVKVKP 105
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 77 EAYSNLGNVYKERGQLQEALENYRHAVRLKPD 108
EAY +GN Y++ G Q+AL NY+ A+ L PD
Sbjct: 36 EAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 235 EAYSNLGNVYKERGQLQEALENYRHAVRLKPD 266
EAY +GN Y++ G Q+AL NY+ A+ L PD
Sbjct: 36 EAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 586 EAYSNLGNVYKERGQLQEALENYRHAVRLKPD 617
EAY +GN Y++ G Q+AL NY+ A+ L PD
Sbjct: 36 EAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67
>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex
pdb|4A1S|B Chain B, Crystallographic Structure Of The Pins:insc Complex
Length = 411
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 88/239 (36%), Gaps = 51/239 (21%)
Query: 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYV 134
L+ YS LGN Y G +A++ ++H + L D L A +
Sbjct: 85 LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND---RLGEAKSSG----------- 130
Query: 135 TALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALG-RLDEAKNLHTEN 193
+LGN LK +GR DEA C L L + LG RL E + L+ N
Sbjct: 131 --------------NLGNTLKVMGRFDEAA--ICCERHL-TLARQLGDRLSEGRALY--N 171
Query: 194 IKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL-----------LAEAYSNLGN 242
+ V + G+ ++ A + Q L A NLGN
Sbjct: 172 LGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGN 231
Query: 243 VYKERGQLQEALENYRHAVRLKPDFID------GYINLAAALVAAGDMEQAVQAYVTAL 295
Y G Q A+E+++ +R+ +F D NL + + G E A + Y L
Sbjct: 232 TYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 18/134 (13%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID------GYINLAAALVAAGDMEQA 638
A NLGN Y G Q A+E+++ +R+ +F D NL + + G E A
Sbjct: 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 282
Query: 639 VQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL 698
+ Y L + +E + +++ G + +H F A+ L
Sbjct: 283 AEHYKRTLALAVELGEREVEAQSCYSL------------GNTYTLLHEFNTAIEYHNRHL 330
Query: 699 DAYINLGNVLKEAR 712
LG+ + EAR
Sbjct: 331 AIAQELGDRIGEAR 344
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 69/190 (36%), Gaps = 69/190 (36%)
Query: 120 LVAAGDMEQAVQAYVTALQYNPD----LYCVRSDLGNLLKALGRLDEA-----KDLYCVR 170
L AGD V + A+Q + L + S LGN LG ++A DL +
Sbjct: 58 LCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK 117
Query: 171 S------------DLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLE 218
S +LGN LK +GR DEA AI C
Sbjct: 118 SMNDRLGEAKSSGNLGNTLKVMGRFDEA-----------------AICC----------- 149
Query: 219 SAHFSTLAIKQNPLLAE--AYSNLGNVYKERGQ-----------------LQEALENYRH 259
H TLA + L+E A NLGNVY +G+ L A+E Y+
Sbjct: 150 ERHL-TLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208
Query: 260 AVRLKPDFID 269
++L D D
Sbjct: 209 NLKLMRDLGD 218
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 78 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 137
A SNLGN + GQ ++A E+Y+ + L + + + A + + G+ + + TA+
Sbjct: 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE-AQSCYSLGNTYTLLHEFNTAI 323
Query: 138 QYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALG 181
+Y+ + +LG+ R+ EA+ + LGN A+G
Sbjct: 324 EYHNRHLAIAQELGD------RIGEARACW----SLGNAHSAIG 357
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111
+F+ + + + F + AI+ NP A Y N Y AL + A+ L +I
Sbjct: 31 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATRAIELDKKYIK 90
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNP 141
GY AA+ +A G A++ Y T ++ P
Sbjct: 91 GYYRRAASNMALGKFRAALRDYETVVKVKP 120
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
F+ + + + F + AI+ NP A Y N Y AL + A+ L +I G
Sbjct: 32 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATRAIELDKKYIKG 91
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNP 650
Y AA+ +A G A++ Y T ++ P
Sbjct: 92 YYRRAASNMALGKFRAALRDYETVVKVKP 120
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%)
Query: 222 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 281
F + AI+ NP A Y N Y AL + A+ L +I GY AA+ +A
Sbjct: 43 FYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATRAIELDKKYIKGYYRRAASNMAL 102
Query: 282 GDMEQAVQAYVTALQYNP 299
G A++ Y T ++ P
Sbjct: 103 GKFRAALRDYETVVKVKP 120
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 103/267 (38%), Gaps = 65/267 (24%)
Query: 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID------GYINLAAALVAAGDMEQ 128
L+ YS LGN Y +ALE + H + L D NL L G+ ++
Sbjct: 46 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDE 105
Query: 129 AVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGR------ 182
A+ Q + D+ +D ++ EA+ LY +LGN+ A G+
Sbjct: 106 AI----VCCQRHLDISRELND---------KVGEARALY----NLGNVYHAKGKSFGCPG 148
Query: 183 --------------LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHF------ 222
L A + + EN+ VT A GR L + H+
Sbjct: 149 PQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQ----GRAFGNLGNTHYLLGNFR 204
Query: 223 -STLAIKQNPLLAE----------AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 271
+ +A +Q L+A+ AYSNLGN Y G+ + A E Y+ + L D
Sbjct: 205 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 264
Query: 272 INLAAALVAAGDMEQAVQAYVTALQYN 298
+ A + + G+ +Q Y A+ Y+
Sbjct: 265 VE-AQSCYSLGNTYTLLQDYEKAIDYH 290
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 78 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 137
AYSNLGN Y G+ + A E Y+ + L D + A + + G+ +Q Y A+
Sbjct: 229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE-AQSCYSLGNTYTLLQDYEKAI 287
Query: 138 QYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEA 186
Y+ + +L + R+ E + + LGN ALG D+A
Sbjct: 288 DYHLKHLAIAQELND------RIGEGRACW----SLGNAYTALGNHDQA 326
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Query: 587 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 646
AYSNLGN Y G+ + A E Y+ + L D + A + + G+ +Q Y A+
Sbjct: 229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE-AQSCYSLGNTYTLLQDYEKAI 287
Query: 647 QYNPSCYLKAIETRPDFA---VAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693
Y+ A E WS LG + A G A+H EK + +
Sbjct: 288 DYHLKHLAIAQELNDRIGEGRACWS-LGNAYTALGNHDQAMHFAEKHLEI 336
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111
+F+ + + + F + AI+ NP A Y N Y AL + A+ L +I
Sbjct: 23 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK 82
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNP 141
GY AA+ +A G A++ Y T ++ P
Sbjct: 83 GYYRRAASNMALGKFRAALRDYETVVKVKP 112
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
F+ + + + F + AI+ NP A Y N Y AL + A+ L +I G
Sbjct: 24 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG 83
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNP 650
Y AA+ +A G A++ Y T ++ P
Sbjct: 84 YYRRAASNMALGKFRAALRDYETVVKVKP 112
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%)
Query: 222 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 281
F + AI+ NP A Y N Y AL + A+ L +I GY AA+ +A
Sbjct: 35 FYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 94
Query: 282 GDMEQAVQAYVTALQYNP 299
G A++ Y T ++ P
Sbjct: 95 GKFRAALRDYETVVKVKP 112
>pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein
Ifit5
pdb|4HOR|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligocytidine
pdb|4HOS|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligouridine
pdb|4HOT|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligoadenine
pdb|4J0U|A Chain A, Crystal Structure Of Ifit5/isg58
Length = 482
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 98/234 (41%), Gaps = 28/234 (11%)
Query: 494 YVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREG 553
YVL Y + ++ +NS NK L + + T+ + + + + + R
Sbjct: 250 YVLRYAAKFYRRKNSWNKALELLKKALEVTPTSSFLHHQMGLCYRAQMIQIKKATHNRPK 309
Query: 554 GSIPITLTFECRKLDKSA--HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHA 611
G + + +L SA HF A++++ + A AY++L N+Y E GQ A + +R A
Sbjct: 310 GKDKLKVD----ELISSAIFHFKA-AMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKA 364
Query: 612 VRLKPDFIDGYINLAAALVAAGDMEQ-----AVQAYVTALQYNP--------SCYLKAIE 658
+RL+ D + + + A+ Y+ AL+ + LK +
Sbjct: 365 LRLENITDDHKHQIHYHYGRFQEFHRKSENTAIHHYLEALKVKDRSPLRTKLTSALKKLS 424
Query: 659 TRPDFAVA-----WSNLGCVFNAQGEIWLAIHHFEKAVSLDP---NFLDAYINL 704
T+ A S LG V+ +GE A ++EKA +DP FL A L
Sbjct: 425 TKRLCHNALDVQSLSALGFVYKLEGEKRQAAEYYEKAQKIDPENAEFLTALCEL 478
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 63 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 106
HF A++++ + A AY++L N+Y E GQ A + +R A+RL+
Sbjct: 326 HFKA-AMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRLE 368
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 221 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 264
HF A++++ + A AY++L N+Y E GQ A + +R A+RL+
Sbjct: 326 HFKA-AMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRLE 368
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 592 GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS 651
GN ++G +EA+ Y + +P GY N A AL+ G+ QA+Q L+Y +
Sbjct: 11 GNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70
Query: 652 CYLKAIETRPDFAVAWSNLGCVFNAQ 677
AI ++ + + + G V + Q
Sbjct: 71 AEHVAIRSKLQYRLELAQ-GAVGSVQ 95
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 83 GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP- 141
GN ++G +EA+ Y + +P GY N A AL+ G+ QA+Q L+Y
Sbjct: 11 GNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70
Query: 142 -DLYCVRSDL 150
+ +RS L
Sbjct: 71 AEHVAIRSKL 80
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 241 GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 298
GN ++G +EA+ Y + +P GY N A AL+ G+ QA+Q L+Y
Sbjct: 11 GNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 4/116 (3%)
Query: 81 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 140
+LG Y + G + E ++ PD I L V + AV V + N
Sbjct: 47 HLGIAYVKTGAVDRGTELLERSIADAPDNIKVATVLGLTYVQVQKYDLAVPLLVKVAEAN 106
Query: 141 PDLYCVRSDLGNLLKALGRLDEAKDLYCV----RSDLGNLLKALGRLDEAKNLHTE 192
P + VR LG L LGR DEA D + + R + G + +A+ E H E
Sbjct: 107 PVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGSHEE 162
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Query: 81 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 140
+LG Y + G + E ++ PD + L V + AV + + N
Sbjct: 47 HLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106
Query: 141 PDLYCVRSDLGNLLKALGRLDEAKDLYCV----RSDLGNLLKALGRLDEAKNLHTENI 194
P + VR LG LK LGR DEA D + + R + G + +A+ E H E +
Sbjct: 107 PINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 33/69 (47%)
Query: 40 NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENY 99
+N V +L + Q +K D + + NP+ LG K G+ EA++++
Sbjct: 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSF 133
Query: 100 RHAVRLKPD 108
+ A+ L+P+
Sbjct: 134 KIALGLRPN 142
>pdb|3RO3|A Chain A, Crystal Structure Of LgnMINSCUTEABLE COMPLEX
Length = 164
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 78 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 137
AYSNLGN Y G+ + A E Y+ + L D + A + + G+ +Q Y A+
Sbjct: 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE-AQSCYSLGNTYTLLQDYEKAI 109
Query: 138 QYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIK 195
Y+ + +L + R+ E + + LGN ALG D+A + ++++
Sbjct: 110 DYHLKHLAIAQELKD------RIGEGRACW----SLGNAYTALGNHDQAMHFAEKHLE 157
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 5/116 (4%)
Query: 587 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 646
AYSNLGN Y G+ + A E Y+ + L D + A + + G+ +Q Y A+
Sbjct: 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE-AQSCYSLGNTYTLLQDYEKAI 109
Query: 647 QYNPSCYLKAIETRPDFA---VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699
Y+ A E + WS LG + A G A+H EK + + D
Sbjct: 110 DYHLKHLAIAQELKDRIGEGRACWS-LGNAYTALGNHDQAMHFAEKHLEISREVGD 164
>pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5
Length = 482
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 22/154 (14%)
Query: 572 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 631
HF A +++ A AY++L N Y E GQ A + +R A+RL+ D +
Sbjct: 326 HFKA-AXERDSXFAFAYTDLANXYAEGGQYSNAEDIFRKALRLENITDDHKHQIHYHYGR 384
Query: 632 AGDMEQ-----AVQAYVTALQYNP--------SCYLKAIETRPDFAVA-----WSNLGCV 673
+ + A+ Y+ AL+ + LK + T+ A S LG V
Sbjct: 385 FQEFHRKSENTAIHHYLEALKVKDRSPLRTKLTSALKKLSTKRLCHNALDVQSLSALGFV 444
Query: 674 FNAQGEIWLAIHHFEKAVSLDP---NFLDAYINL 704
+ +GE A ++EKA +DP FL A L
Sbjct: 445 YKLEGEKRQAAEYYEKAQKIDPENAEFLTALCEL 478
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 63 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 106
HF A +++ A AY++L N Y E GQ A + +R A+RL+
Sbjct: 326 HFKA-AXERDSXFAFAYTDLANXYAEGGQYSNAEDIFRKALRLE 368
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 221 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 264
HF A +++ A AY++L N Y E GQ A + +R A+RL+
Sbjct: 326 HFKA-AXERDSXFAFAYTDLANXYAEGGQYSNAEDIFRKALRLE 368
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 84/198 (42%), Gaps = 25/198 (12%)
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALV 121
K +P +A +NL +Y +RG+ +EA + A+ ++ PD NLA
Sbjct: 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ 164
Query: 122 AAGDMEQAVQAYVTALQY--------NPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDL 173
G E+ Y AL+ +P++ +++L + G+ +A+ LY ++
Sbjct: 165 NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLY---KEI 221
Query: 174 GNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTL-ESAHFSTLAIKQNPL 232
L +A R E ++ EN KP+ M + C + T+ E + +P
Sbjct: 222 --LTRAHER--EFGSVDDEN-KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT 276
Query: 233 LAEAYSNLGNVYKERGQL 250
+ NLG +Y+ +G+
Sbjct: 277 VTTTLKNLGALYRRQGKF 294
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
K PLL +NLG+V ++ + EAL+ +R A+ L P Y + G+ E A
Sbjct: 234 KWEPLL----NNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLXGNFENA 289
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLK 155
V + TAL D + LG+ ++
Sbjct: 290 VDYFHTALGLRRDDTFSVTXLGHCIE 315
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 228 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 287
K PLL +NLG+V ++ + EAL+ +R A+ L P Y + G+ E A
Sbjct: 234 KWEPLL----NNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLXGNFENA 289
Query: 288 VQAYVTAL 295
V + TAL
Sbjct: 290 VDYFHTAL 297
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 579 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 638
K PLL +NLG+V ++ + EAL+ +R A+ L P Y + G+ E A
Sbjct: 234 KWEPLL----NNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLXGNFENA 289
Query: 639 VQAYVTAL 646
V + TAL
Sbjct: 290 VDYFHTAL 297
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
Query: 81 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 140
+LG Y + G + E ++ PD + L V + AV + + N
Sbjct: 47 HLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106
Query: 141 PDLYCVRSDLGNLLKALGRLDEAKDLYCV----RSDLGNLLKALGRLDEAKNLHTENI 194
P + VR LG L LGR DEA D + + R + G + +A+ E H E +
Sbjct: 107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 66 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 125
T IK+ P A YSN + EA+ + A+ P+F+ YI A A +
Sbjct: 28 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI---- 83
Query: 126 MEQAVQAYVTALQ 138
AV+ Y +AL+
Sbjct: 84 ---AVKEYASALE 93
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
T IK+ P A YSN + EA+ + A+ P+F+ YI A A +
Sbjct: 28 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI---- 83
Query: 284 MEQAVQAYVTALQ 296
AV+ Y +AL+
Sbjct: 84 ---AVKEYASALE 93
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
T IK+ P A YSN + EA+ + A+ P+F+ YI A A +
Sbjct: 28 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI---- 83
Query: 635 MEQAVQAYVTALQ 647
AV+ Y +AL+
Sbjct: 84 ---AVKEYASALE 93
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
Query: 81 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 140
+LG Y + G + E ++ PD + L V + AV + + N
Sbjct: 47 HLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106
Query: 141 PDLYCVRSDLGNLLKALGRLDEAKDLYCV----RSDLGNLLKALGRLDEAKNLHTENI 194
P + VR LG L LGR DEA D + + R + G + +A+ E H E +
Sbjct: 107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 46 LLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL 105
L L+S+H K +K S + ++P A + +G Y ++ EA + + +
Sbjct: 344 LHLASLHESGEK-NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM 402
Query: 106 KPDFIDGYINLAAALVAAGDMEQAVQAYVTA 136
P F +I A + G+ +QA+ AY TA
Sbjct: 403 DPQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 70/170 (41%), Gaps = 30/170 (17%)
Query: 578 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 637
+ ++P A + +G Y ++ EA + + + P F +I A + G+ +Q
Sbjct: 366 VDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ 425
Query: 638 AVQAYVTALQYNPSCYLKAI-----------------ETRPDFA------VAWSNLGCVF 674
A+ AY TA + +L + + +A + + LG V
Sbjct: 426 AISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVA 485
Query: 675 NAQGEIWLAIHHFEKAVSL-------DPNFLDAYINLGNVLKEARIFDRA 717
+ ++ AI+HF+ A+ L + + + NLG+ ++ +++D A
Sbjct: 486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 227 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 286
+ ++P A + +G Y ++ EA + + + P F +I A + G+ +Q
Sbjct: 366 VDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ 425
Query: 287 AVQAYVTA 294
A+ AY TA
Sbjct: 426 AISAYTTA 433
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
F RK ++A AI +NPL+A Y+N Y + Q ++AL + R A+ L +
Sbjct: 15 FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA 74
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFA 664
+ L G + +++Y A+ Y A E R +F
Sbjct: 75 HFFL-------GQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 53 FQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 112
F RK ++A AI +NPL+A Y+N Y + Q ++AL + R A+ L +
Sbjct: 15 FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA 74
Query: 113 YINLAAALVAAGDMEQAV 130
+ L + ++A+
Sbjct: 75 HFFLGQCQLEMESYDEAI 92
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277
E+A AI +NPL+A Y+N Y + Q ++AL + R A+ L + + L
Sbjct: 22 EAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81
Query: 278 LVAAGDMEQAV 288
+ ++A+
Sbjct: 82 QLEMESYDEAI 92
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
F RK ++A AI +NPL+A Y+N Y + Q ++AL + R A+ L +
Sbjct: 20 FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA 79
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFA 664
+ L G + +++Y A+ Y A E R +F
Sbjct: 80 HFFL-------GQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 115
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 53 FQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 112
F RK ++A AI +NPL+A Y+N Y + Q ++AL + R A+ L +
Sbjct: 20 FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA 79
Query: 113 YINLAAALVAAGDMEQAV 130
+ L + ++A+
Sbjct: 80 HFFLGQCQLEMESYDEAI 97
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 24/148 (16%)
Query: 44 VLLLLSSIHFQCRKLDKSAHF--STLAI------KQNPLLAEAYSNLGNVYKERGQLQEA 95
+L +L+ ++ K ++AH LAI K +P +A +NL +Y +RG+ +EA
Sbjct: 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA 104
Query: 96 LENYRHAVRLK--------PDFIDGYINLAAALVAAGDMEQAVQAYVTALQY-------- 139
+ A+ ++ PD NLA G E+ Y AL+
Sbjct: 105 EPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164
Query: 140 NPDLYCVRSDLGNLLKALGRLDEAKDLY 167
+P++ +++L + G+ +A+ LY
Sbjct: 165 DPNVAKTKNNLASCYLKQGKYQDAETLY 192
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 20/104 (19%)
Query: 583 LLAEAYSNLGNVYKERGQLQEALENYRHAVR----------------LKPDFIDGYINLA 626
L++E N+GN + + + A++ Y +R L+P + +N+
Sbjct: 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG 280
Query: 627 AALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNL 670
A + D + AV + + AL+ +PS KA+ R A W L
Sbjct: 281 ACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRR---AQGWQGL 320
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 24/148 (16%)
Query: 44 VLLLLSSIHFQCRKLDKSAHF--STLAI------KQNPLLAEAYSNLGNVYKERGQLQEA 95
+L +L+ ++ K ++AH LAI K +P +A +NL +Y +RG+ +EA
Sbjct: 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA 104
Query: 96 LENYRHAVRLK--------PDFIDGYINLAAALVAAGDMEQAVQAYVTALQY-------- 139
+ A+ ++ PD NLA G E+ Y AL+
Sbjct: 105 EPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164
Query: 140 NPDLYCVRSDLGNLLKALGRLDEAKDLY 167
+P++ +++L + G+ +A+ LY
Sbjct: 165 DPNVAKTKNNLASCYLKQGKYQDAETLY 192
>pdb|3W01|A Chain A, Crystal Structure Of Pcrb Complexed With Peg From
Staphylococcus Aureus Subsp. Aureus Mu3
pdb|3W01|B Chain B, Crystal Structure Of Pcrb Complexed With Peg From
Staphylococcus Aureus Subsp. Aureus Mu3
pdb|3W02|A Chain A, Crystal Structure Of Pcrb Complexed With So4 From
Staphylococcus Aureus Subsp. Aureus Mu3
pdb|3W02|B Chain B, Crystal Structure Of Pcrb Complexed With So4 From
Staphylococcus Aureus Subsp. Aureus Mu3
Length = 235
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 21/110 (19%)
Query: 182 RLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL-LAEAYSNL 240
+LD AK++ +++ + M +AI+ GG T ++ I++ PL L SN+
Sbjct: 17 KLDPAKHISDDDLDAICMSQTDAIMI--GGTDDVTEDNVIHLMSKIRRYPLPLVLEISNI 74
Query: 241 GNVYK------------------ERGQLQEALENYRHAVRLKPDFIDGYI 272
+V G L EAL+ Y H++ + +GY+
Sbjct: 75 ESVMPGFDFYFVPTVLNSTDVAFHNGTLLEALKTYGHSIDFEEVIFEGYV 124
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 655 KAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708
+A+ RPD ++ LG G A F+ + LDP + A++N G L
Sbjct: 68 QALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 121
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 33/168 (19%)
Query: 580 QNPLLAE--------AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 631
QNPL + AY LG Y +RG ++A R A+ + P D + LA
Sbjct: 37 QNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQT 96
Query: 632 AGDMEQAVQAYVTALQYNP--------------------SCYLKAIETR-----PDFAVA 666
+ + A + Y AL + Y + +E P+ +
Sbjct: 97 EMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRV 156
Query: 667 WSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIF 714
+ NLG V + A +FEK++ L+ N + + ++L + R +
Sbjct: 157 FENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY 204
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 662 DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIF 714
D A+A +LG Q + A H++KA+ LDP+ + Y N V E + F
Sbjct: 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKF 58
>pdb|3EO7|A Chain A, Crystal Structure Of A Putative Nitroreductase (Ava_2154)
From Anabaena Variabilis Atcc 29413 At 1.80 A Resolution
Length = 511
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 355 NIKIECASKDLHSGLFGGSVHEAMTDLIYI 384
NI++ A D L GG + EA+ DL+YI
Sbjct: 195 NIELSAAITDYRPHLIGGFIDEAVNDLLYI 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,625,198
Number of Sequences: 62578
Number of extensions: 1127476
Number of successful extensions: 3404
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2768
Number of HSP's gapped (non-prelim): 493
length of query: 904
length of database: 14,973,337
effective HSP length: 108
effective length of query: 796
effective length of database: 8,214,913
effective search space: 6539070748
effective search space used: 6539070748
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)