Query psy17306
Match_columns 904
No_of_seqs 1042 out of 3472
Neff 10.9
Searched_HMMs 46136
Date Fri Aug 16 18:37:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626|consensus 100.0 8.5E-53 1.8E-57 423.3 39.1 548 7-809 47-618 (966)
2 KOG4626|consensus 100.0 1.9E-47 4.1E-52 384.8 33.2 407 4-693 112-519 (966)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-41 2.3E-46 417.7 61.2 676 5-758 122-863 (899)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 1.7E-40 3.7E-45 407.0 63.6 658 5-755 190-894 (899)
5 PRK11447 cellulose synthase su 100.0 4.3E-38 9.3E-43 382.7 61.0 578 7-758 27-697 (1157)
6 PRK11447 cellulose synthase su 100.0 1.2E-35 2.6E-40 361.4 59.6 565 5-755 59-734 (1157)
7 KOG2002|consensus 100.0 6.9E-37 1.5E-41 326.3 41.8 579 24-782 110-728 (1018)
8 TIGR00990 3a0801s09 mitochondr 100.0 2E-34 4.4E-39 329.6 53.9 435 7-734 126-578 (615)
9 PRK09782 bacteriophage N4 rece 100.0 2.5E-33 5.5E-38 323.4 63.0 598 7-758 43-737 (987)
10 KOG2002|consensus 100.0 8.4E-35 1.8E-39 310.4 44.9 594 11-748 131-766 (1018)
11 PF09110 HAND: HAND; InterPro 100.0 2.1E-37 4.5E-42 250.5 8.4 99 805-903 1-112 (113)
12 PRK09782 bacteriophage N4 rece 100.0 4.7E-32 1E-36 312.9 55.8 506 5-732 75-745 (987)
13 TIGR00990 3a0801s09 mitochondr 100.0 2.6E-32 5.7E-37 312.2 47.3 429 42-758 127-568 (615)
14 PRK15174 Vi polysaccharide exp 100.0 7.6E-30 1.7E-34 289.8 45.8 132 544-697 250-385 (656)
15 PRK10049 pgaA outer membrane p 100.0 4.5E-29 9.7E-34 290.1 46.2 421 9-737 16-466 (765)
16 KOG0547|consensus 100.0 6.9E-29 1.5E-33 245.2 38.8 189 543-747 397-586 (606)
17 PRK15174 Vi polysaccharide exp 100.0 7.3E-29 1.6E-33 281.8 44.3 363 75-758 41-407 (656)
18 KOG2076|consensus 100.0 1.4E-25 2.9E-30 239.1 55.6 642 5-724 136-892 (895)
19 KOG0547|consensus 100.0 1.2E-26 2.5E-31 229.6 38.0 422 6-697 113-570 (606)
20 PRK10049 pgaA outer membrane p 100.0 1.3E-26 2.9E-31 269.5 44.3 438 28-755 2-450 (765)
21 KOG0548|consensus 100.0 3E-26 6.6E-31 230.9 37.5 447 47-725 7-487 (539)
22 KOG1173|consensus 100.0 8.4E-25 1.8E-29 221.1 39.9 490 11-744 19-535 (611)
23 PRK14574 hmsH outer membrane p 100.0 7.3E-24 1.6E-28 240.2 51.5 474 35-736 27-522 (822)
24 KOG2003|consensus 99.9 8.5E-25 1.8E-29 213.7 33.3 468 7-735 200-697 (840)
25 KOG0495|consensus 99.9 1.6E-22 3.4E-27 206.9 49.2 181 544-735 689-888 (913)
26 KOG1155|consensus 99.9 2.7E-23 5.7E-28 204.8 40.9 381 9-705 165-548 (559)
27 KOG0548|consensus 99.9 3.6E-24 7.7E-29 216.1 34.1 416 9-700 3-495 (539)
28 PRK14574 hmsH outer membrane p 99.9 2.8E-22 6.1E-27 227.4 52.5 457 5-706 31-525 (822)
29 KOG1155|consensus 99.9 6.2E-23 1.3E-27 202.2 38.5 441 11-741 81-550 (559)
30 KOG1126|consensus 99.9 9.7E-25 2.1E-29 225.9 26.7 169 77-301 318-488 (638)
31 KOG1173|consensus 99.9 3.1E-23 6.7E-28 209.8 34.2 407 8-709 49-534 (611)
32 KOG1126|consensus 99.9 6.4E-24 1.4E-28 219.9 27.8 307 111-733 318-626 (638)
33 KOG2076|consensus 99.9 2.6E-21 5.6E-26 206.8 44.8 646 4-691 169-893 (895)
34 KOG2003|consensus 99.9 1E-22 2.3E-27 199.2 31.2 509 8-764 149-691 (840)
35 PRK11788 tetratricopeptide rep 99.9 6.2E-22 1.4E-26 215.9 37.9 204 42-301 35-247 (389)
36 KOG0624|consensus 99.9 1.3E-21 2.8E-26 185.1 34.3 220 38-301 34-256 (504)
37 PRK11788 tetratricopeptide rep 99.9 9.7E-22 2.1E-26 214.3 36.9 238 8-301 35-282 (389)
38 PLN03077 Protein ECB2; Provisi 99.9 2.7E-20 5.9E-25 222.3 52.2 188 499-729 530-722 (857)
39 KOG1156|consensus 99.9 9.9E-20 2.1E-24 187.5 48.1 489 4-695 3-513 (700)
40 PLN03142 Probable chromatin-re 99.9 1.4E-24 3E-29 247.6 13.9 174 717-903 644-822 (1033)
41 PLN03081 pentatricopeptide (PP 99.9 3.2E-20 7E-25 216.1 49.1 449 10-729 89-559 (697)
42 KOG1127|consensus 99.9 1.7E-21 3.6E-26 208.7 32.7 551 22-721 382-1030(1238)
43 PLN03077 Protein ECB2; Provisi 99.9 7.3E-19 1.6E-23 210.0 58.0 281 11-297 54-383 (857)
44 KOG4162|consensus 99.9 2.8E-20 6.1E-25 195.5 39.5 139 541-699 651-789 (799)
45 KOG0624|consensus 99.9 1.6E-20 3.5E-25 177.8 33.0 211 5-271 35-260 (504)
46 KOG1127|consensus 99.9 6.8E-19 1.5E-23 189.0 43.5 549 5-739 489-1116(1238)
47 KOG4162|consensus 99.9 5.7E-19 1.2E-23 185.8 39.8 436 74-731 321-787 (799)
48 PLN03218 maturation of RBCL 1; 99.9 1.2E-17 2.6E-22 195.4 55.5 253 11-296 373-642 (1060)
49 KOG1174|consensus 99.9 1.7E-18 3.7E-23 168.3 35.1 384 8-709 97-516 (564)
50 KOG1174|consensus 99.9 1.2E-17 2.7E-22 162.5 39.3 200 511-743 315-516 (564)
51 PLN03081 pentatricopeptide (PP 99.9 5.4E-18 1.2E-22 197.5 44.7 444 44-757 89-553 (697)
52 KOG0495|consensus 99.9 1E-17 2.2E-22 172.2 39.2 401 8-705 479-892 (913)
53 PLN03218 maturation of RBCL 1; 99.9 9.6E-17 2.1E-21 187.9 52.3 208 27-296 356-570 (1060)
54 PF13429 TPR_15: Tetratricopep 99.8 4.3E-21 9.2E-26 197.3 12.5 162 544-727 114-277 (280)
55 KOG0385|consensus 99.8 4.2E-21 9.2E-26 200.7 9.1 140 726-903 654-793 (971)
56 TIGR00540 hemY_coli hemY prote 99.8 1.3E-17 2.8E-22 180.2 35.7 140 577-728 251-400 (409)
57 COG3063 PilF Tfp pilus assembl 99.8 3E-18 6.6E-23 154.8 25.2 212 3-270 30-243 (250)
58 PRK12370 invasion protein regu 99.8 2.9E-18 6.4E-23 192.4 29.9 230 11-298 261-503 (553)
59 TIGR00540 hemY_coli hemY prote 99.8 7.1E-17 1.5E-21 174.6 37.7 203 43-301 85-296 (409)
60 KOG1915|consensus 99.8 1.9E-14 4.2E-19 142.9 49.0 471 10-728 75-586 (677)
61 PF13429 TPR_15: Tetratricopep 99.8 1.4E-19 3E-24 186.1 13.9 195 47-299 13-211 (280)
62 KOG0550|consensus 99.8 4.8E-18 1E-22 165.8 22.5 97 543-650 252-352 (486)
63 PRK11189 lipoprotein NlpI; Pro 99.8 1.2E-17 2.6E-22 171.4 25.4 221 21-301 39-269 (296)
64 KOG1125|consensus 99.8 1.7E-18 3.7E-23 176.9 17.9 234 12-301 289-531 (579)
65 KOG1125|consensus 99.8 1.1E-17 2.3E-22 171.2 23.5 253 224-685 309-563 (579)
66 KOG2376|consensus 99.8 2.6E-15 5.7E-20 153.6 40.3 478 9-721 13-514 (652)
67 KOG1840|consensus 99.8 2.8E-16 6.1E-21 166.3 34.5 178 541-725 284-477 (508)
68 PRK11189 lipoprotein NlpI; Pro 99.8 3.3E-17 7.1E-22 168.1 26.9 223 6-282 62-285 (296)
69 PRK12370 invasion protein regu 99.8 7.4E-17 1.6E-21 181.1 31.6 201 45-301 261-474 (553)
70 KOG1129|consensus 99.8 1.2E-17 2.7E-22 157.4 20.6 193 50-299 187-389 (478)
71 PRK10747 putative protoheme IX 99.8 7E-16 1.5E-20 165.8 36.5 288 7-298 83-391 (398)
72 PRK10747 putative protoheme IX 99.8 9.6E-16 2.1E-20 164.7 37.1 204 43-299 85-294 (398)
73 TIGR02521 type_IV_pilW type IV 99.8 7.7E-17 1.7E-21 162.5 26.9 203 41-299 30-234 (234)
74 KOG1915|consensus 99.8 3.4E-14 7.4E-19 141.1 44.1 421 64-728 61-501 (677)
75 KOG1129|consensus 99.8 1.4E-17 3.1E-22 157.0 19.0 234 12-302 227-463 (478)
76 COG3063 PilF Tfp pilus assembl 99.8 1.4E-16 3E-21 144.2 24.0 205 42-302 35-241 (250)
77 TIGR02521 type_IV_pilW type IV 99.8 1.4E-16 3E-21 160.5 27.1 207 3-265 26-234 (234)
78 KOG0550|consensus 99.8 7.4E-17 1.6E-21 157.6 23.0 184 544-746 173-368 (486)
79 KOG1156|consensus 99.8 7E-15 1.5E-19 152.2 37.8 194 42-291 7-208 (700)
80 KOG1840|consensus 99.8 3.2E-16 6.8E-21 165.9 26.6 249 3-299 194-481 (508)
81 PLN02789 farnesyltranstransfer 99.7 6.9E-16 1.5E-20 157.0 27.4 242 8-301 37-306 (320)
82 COG2956 Predicted N-acetylgluc 99.7 2.2E-14 4.7E-19 136.0 31.0 233 12-301 39-282 (389)
83 KOG3785|consensus 99.7 2.9E-13 6.2E-18 129.7 38.1 441 52-756 32-488 (557)
84 PLN02789 farnesyltranstransfer 99.7 2.6E-15 5.6E-20 152.8 25.7 133 557-711 125-268 (320)
85 KOG2376|consensus 99.7 1.5E-12 3.3E-17 133.8 41.5 481 43-743 13-503 (652)
86 COG2956 Predicted N-acetylgluc 99.7 1.6E-13 3.4E-18 130.3 30.8 274 116-702 41-320 (389)
87 KOG1130|consensus 99.7 6.7E-15 1.5E-19 143.4 21.7 300 234-716 55-373 (639)
88 PRK15359 type III secretion sy 99.6 7E-15 1.5E-19 132.4 15.8 122 577-712 19-140 (144)
89 KOG2047|consensus 99.6 2.5E-10 5.3E-15 118.6 49.9 524 21-753 38-679 (835)
90 cd05804 StaR_like StaR_like; a 99.6 6.8E-13 1.5E-17 142.7 33.6 177 72-301 2-181 (355)
91 KOG3785|consensus 99.6 1.3E-12 2.9E-17 125.1 30.6 151 17-167 31-208 (557)
92 TIGR03302 OM_YfiO outer membra 99.6 8.8E-14 1.9E-18 139.3 22.8 190 38-300 29-235 (235)
93 PF12569 NARP1: NMDA receptor- 99.6 2.1E-11 4.5E-16 131.6 40.8 251 8-301 4-261 (517)
94 cd05804 StaR_like StaR_like; a 99.6 2E-12 4.2E-17 139.1 32.7 295 5-300 3-339 (355)
95 PRK15359 type III secretion sy 99.6 2.7E-14 5.9E-19 128.5 15.1 127 28-157 13-139 (144)
96 KOG4340|consensus 99.6 5.3E-12 1.2E-16 118.3 28.9 185 53-298 21-208 (459)
97 TIGR03302 OM_YfiO outer membra 99.6 1.7E-13 3.6E-18 137.3 20.5 164 4-167 29-226 (235)
98 PRK10370 formate-dependent nit 99.6 3.7E-13 8E-18 128.1 20.1 130 598-738 52-184 (198)
99 COG3071 HemY Uncharacterized e 99.5 3.5E-11 7.7E-16 118.6 33.2 288 8-298 84-391 (400)
100 PF12569 NARP1: NMDA receptor- 99.5 2.6E-11 5.6E-16 130.9 35.5 133 541-693 195-334 (517)
101 KOG2047|consensus 99.5 3.6E-09 7.9E-14 110.1 48.3 595 31-762 16-659 (835)
102 PRK15179 Vi polysaccharide bio 99.5 2.7E-12 5.9E-17 143.9 23.0 143 577-730 78-220 (694)
103 KOG1130|consensus 99.5 8E-13 1.7E-17 129.2 15.4 266 8-300 17-347 (639)
104 PRK10370 formate-dependent nit 99.5 1.5E-12 3.2E-17 124.0 17.0 124 21-144 52-178 (198)
105 KOG0553|consensus 99.5 2.5E-12 5.5E-17 122.2 18.0 129 585-724 81-212 (304)
106 TIGR02552 LcrH_SycD type III s 99.5 1.6E-12 3.5E-17 117.4 14.7 125 607-742 5-129 (135)
107 PRK14720 transcript cleavage f 99.5 6.3E-12 1.4E-16 141.3 22.3 239 38-298 27-284 (906)
108 COG5010 TadD Flp pilus assembl 99.5 1.2E-11 2.7E-16 115.4 20.3 140 27-167 52-191 (257)
109 COG3071 HemY Uncharacterized e 99.4 1.4E-09 3E-14 107.6 35.3 205 44-301 86-296 (400)
110 PRK15363 pathogenicity island 99.4 2.5E-12 5.5E-17 112.1 14.2 122 611-743 26-148 (157)
111 COG5010 TadD Flp pilus assembl 99.4 6.7E-12 1.4E-16 117.2 17.5 164 577-752 59-222 (257)
112 PRK04841 transcriptional regul 99.4 1E-09 2.2E-14 133.8 41.5 238 11-299 344-604 (903)
113 PRK14720 transcript cleavage f 99.4 3.8E-11 8.2E-16 135.2 26.2 174 543-742 119-301 (906)
114 KOG3060|consensus 99.4 7.9E-11 1.7E-15 108.6 23.4 204 20-279 24-236 (289)
115 TIGR02552 LcrH_SycD type III s 99.4 5.9E-12 1.3E-16 113.6 15.5 119 29-147 4-122 (135)
116 KOG3060|consensus 99.4 5.1E-11 1.1E-15 109.8 21.3 185 542-748 54-241 (289)
117 PRK04841 transcriptional regul 99.4 4E-09 8.6E-14 128.7 43.1 175 544-732 577-765 (903)
118 KOG4340|consensus 99.4 3.9E-10 8.4E-15 106.0 25.7 188 18-263 20-207 (459)
119 PRK15179 Vi polysaccharide bio 99.4 2.6E-11 5.6E-16 136.1 20.3 173 496-700 52-224 (694)
120 PRK15363 pathogenicity island 99.4 2.2E-11 4.7E-16 106.3 15.2 114 577-701 26-143 (157)
121 KOG1128|consensus 99.4 2.1E-11 4.5E-16 128.8 17.8 228 3-301 393-620 (777)
122 KOG1128|consensus 99.4 2.3E-11 4.9E-16 128.5 18.1 131 587-728 487-617 (777)
123 KOG0553|consensus 99.4 1.4E-11 3.1E-16 117.1 14.5 120 42-161 81-200 (304)
124 COG4783 Putative Zn-dependent 99.3 1.2E-09 2.7E-14 111.0 24.5 130 38-167 302-431 (484)
125 PF04733 Coatomer_E: Coatomer 99.2 1.3E-09 2.9E-14 109.9 20.8 78 224-301 191-269 (290)
126 PLN03088 SGT1, suppressor of 99.2 2.8E-10 6.1E-15 119.6 15.8 114 588-712 5-118 (356)
127 PLN03088 SGT1, suppressor of 99.2 2.9E-10 6.2E-15 119.5 15.8 110 11-120 5-114 (356)
128 KOG2053|consensus 99.2 5.6E-06 1.2E-10 90.7 47.4 235 17-301 18-259 (932)
129 PF04733 Coatomer_E: Coatomer 99.2 1.1E-09 2.4E-14 110.5 17.1 179 544-753 106-287 (290)
130 COG4783 Putative Zn-dependent 99.1 8.2E-09 1.8E-13 105.2 20.9 139 581-730 302-440 (484)
131 PRK10866 outer membrane biogen 99.1 3.3E-08 7.2E-13 97.4 24.2 179 40-294 30-238 (243)
132 PF13525 YfiO: Outer membrane 99.1 9.8E-09 2.1E-13 98.9 19.6 158 7-164 4-198 (203)
133 PRK10866 outer membrane biogen 99.1 1.7E-08 3.7E-13 99.4 21.4 161 7-167 31-235 (243)
134 COG4235 Cytochrome c biogenesi 99.1 8.2E-09 1.8E-13 99.7 17.0 122 24-145 138-262 (287)
135 PF09976 TPR_21: Tetratricopep 99.1 9.9E-09 2.1E-13 93.1 16.8 131 6-137 9-145 (145)
136 COG4235 Cytochrome c biogenesi 99.0 8.2E-09 1.8E-13 99.7 16.4 130 600-740 137-269 (287)
137 PF13525 YfiO: Outer membrane 99.0 4.6E-08 9.9E-13 94.2 21.7 175 41-288 4-198 (203)
138 TIGR02795 tol_pal_ybgF tol-pal 99.0 4.7E-09 1E-13 92.4 13.3 106 585-701 2-113 (119)
139 PRK02603 photosystem I assembl 99.0 5E-09 1.1E-13 98.4 14.1 99 581-690 31-132 (172)
140 TIGR02795 tol_pal_ybgF tol-pal 99.0 7.2E-09 1.6E-13 91.2 13.6 103 9-111 3-111 (119)
141 CHL00033 ycf3 photosystem I as 99.0 1E-08 2.2E-13 96.0 15.3 110 577-697 25-153 (168)
142 PF13414 TPR_11: TPR repeat; P 99.0 1.3E-09 2.7E-14 84.6 7.6 67 663-729 2-69 (69)
143 PRK02603 photosystem I assembl 99.0 1.6E-08 3.5E-13 94.9 16.5 104 40-143 33-153 (172)
144 KOG0543|consensus 99.0 1E-08 2.2E-13 102.6 15.4 119 585-714 208-341 (397)
145 KOG3617|consensus 99.0 9.8E-06 2.1E-10 87.4 38.2 28 664-691 1145-1172(1416)
146 PRK11906 transcriptional regul 99.0 3.3E-08 7.2E-13 101.6 19.5 158 10-167 257-430 (458)
147 PF13414 TPR_11: TPR repeat; P 99.0 1.9E-09 4.2E-14 83.5 8.0 67 618-695 2-69 (69)
148 CHL00033 ycf3 photosystem I as 99.0 1.2E-08 2.7E-13 95.4 14.9 127 18-144 9-154 (168)
149 COG4785 NlpI Lipoprotein NlpI, 99.0 1.1E-07 2.4E-12 85.7 18.7 102 43-144 66-167 (297)
150 KOG0543|consensus 98.9 1.3E-08 2.8E-13 101.7 14.0 129 620-752 209-345 (397)
151 PRK11906 transcriptional regul 98.9 4.3E-08 9.3E-13 100.8 18.1 151 556-728 274-437 (458)
152 PF09976 TPR_21: Tetratricopep 98.9 5.6E-08 1.2E-12 88.2 16.8 119 595-725 21-145 (145)
153 PRK15331 chaperone protein Sic 98.9 2E-08 4.4E-13 88.2 12.9 108 36-144 31-138 (165)
154 PF12895 Apc3: Anaphase-promot 98.9 3.9E-09 8.4E-14 85.3 8.0 80 21-101 2-83 (84)
155 cd00189 TPR Tetratricopeptide 98.9 1.2E-08 2.7E-13 85.8 11.4 97 588-695 3-99 (100)
156 cd00189 TPR Tetratricopeptide 98.9 1.5E-08 3.3E-13 85.2 12.0 97 45-141 3-99 (100)
157 PRK10153 DNA-binding transcrip 98.9 4.4E-08 9.4E-13 107.2 18.4 138 7-145 338-488 (517)
158 KOG3617|consensus 98.9 1.8E-06 3.9E-11 92.8 29.3 64 662-725 1078-1172(1416)
159 PRK15331 chaperone protein Sic 98.9 1.9E-08 4E-13 88.4 11.9 106 611-727 29-134 (165)
160 PF12895 Apc3: Anaphase-promot 98.9 5.3E-09 1.1E-13 84.6 7.8 81 55-136 2-84 (84)
161 KOG1941|consensus 98.9 1.2E-06 2.7E-11 85.3 23.7 174 542-725 164-358 (518)
162 PF13432 TPR_16: Tetratricopep 98.9 1.1E-08 2.4E-13 78.0 8.1 64 624-698 2-65 (65)
163 PF13432 TPR_16: Tetratricopep 98.9 1.3E-08 2.8E-13 77.6 8.2 63 81-143 2-64 (65)
164 KOG4648|consensus 98.8 5.3E-09 1.2E-13 100.4 7.1 219 45-301 100-334 (536)
165 PRK10153 DNA-binding transcrip 98.8 7.2E-08 1.6E-12 105.5 16.8 145 524-699 331-488 (517)
166 PRK10803 tol-pal system protei 98.8 1.1E-07 2.3E-12 94.3 16.1 110 584-701 141-254 (263)
167 KOG4234|consensus 98.8 6.9E-08 1.5E-12 85.8 12.8 135 625-765 101-243 (271)
168 PF14938 SNAP: Soluble NSF att 98.8 1.1E-07 2.4E-12 97.0 15.8 180 540-730 35-228 (282)
169 PF14938 SNAP: Soluble NSF att 98.8 1.6E-07 3.5E-12 95.9 16.5 200 47-299 40-268 (282)
170 COG0457 NrfG FOG: TPR repeat [ 98.8 9E-06 1.9E-10 82.5 29.8 224 21-300 36-268 (291)
171 COG4785 NlpI Lipoprotein NlpI, 98.8 9.2E-07 2E-11 79.9 18.6 93 75-167 64-156 (297)
172 PRK10803 tol-pal system protei 98.8 1.7E-07 3.8E-12 92.7 15.5 103 42-144 142-251 (263)
173 KOG2471|consensus 98.7 6.1E-05 1.3E-09 76.8 32.2 149 117-280 213-381 (696)
174 KOG1941|consensus 98.7 1.4E-06 3E-11 85.0 19.6 268 6-300 4-323 (518)
175 KOG4234|consensus 98.7 1.7E-07 3.7E-12 83.3 12.2 118 585-713 95-217 (271)
176 PF12688 TPR_5: Tetratrico pep 98.7 4.1E-07 9E-12 77.4 13.3 96 586-692 2-103 (120)
177 COG0457 NrfG FOG: TPR repeat [ 98.7 1.1E-05 2.4E-10 81.7 27.2 203 8-266 59-268 (291)
178 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 4.4E-07 9.6E-12 94.5 15.9 151 10-168 140-292 (395)
179 PF13512 TPR_18: Tetratricopep 98.7 4.5E-07 9.7E-12 78.1 12.7 84 8-91 10-99 (142)
180 KOG2053|consensus 98.7 0.0015 3.2E-08 72.4 43.6 188 3-191 38-250 (932)
181 KOG3616|consensus 98.7 0.0005 1.1E-08 73.6 37.0 80 19-99 455-554 (1636)
182 KOG1070|consensus 98.6 6.3E-06 1.4E-10 94.1 23.8 217 26-299 1442-1665(1710)
183 PF13424 TPR_12: Tetratricopep 98.6 7.3E-08 1.6E-12 76.7 6.5 74 616-693 2-75 (78)
184 PF12688 TPR_5: Tetratrico pep 98.6 5.1E-07 1.1E-11 76.8 11.9 100 619-726 1-103 (120)
185 COG3898 Uncharacterized membra 98.6 5.4E-05 1.2E-09 75.1 27.1 220 54-299 166-394 (531)
186 KOG3081|consensus 98.6 2.6E-05 5.7E-10 73.5 23.7 256 14-301 14-275 (299)
187 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 9.5E-07 2.1E-11 92.1 16.1 126 589-728 173-298 (395)
188 PF06552 TOM20_plant: Plant sp 98.6 3.3E-07 7.1E-12 81.3 10.6 96 601-700 7-116 (186)
189 COG4105 ComL DNA uptake lipopr 98.6 8.2E-06 1.8E-10 77.4 20.5 161 7-167 33-227 (254)
190 KOG3081|consensus 98.6 3.9E-05 8.4E-10 72.4 24.5 176 544-752 112-292 (299)
191 PF14559 TPR_19: Tetratricopep 98.6 1.5E-07 3.3E-12 72.5 7.1 66 19-84 2-67 (68)
192 KOG4648|consensus 98.6 3.6E-08 7.7E-13 94.9 4.1 97 544-651 101-197 (536)
193 PF14559 TPR_19: Tetratricopep 98.6 2.2E-07 4.7E-12 71.7 7.7 66 87-152 2-67 (68)
194 PF13424 TPR_12: Tetratricopep 98.6 1.1E-07 2.3E-12 75.7 6.1 68 660-727 1-75 (78)
195 COG1729 Uncharacterized protei 98.6 1.7E-06 3.7E-11 82.9 14.5 102 11-112 144-251 (262)
196 KOG2300|consensus 98.5 0.0017 3.6E-08 66.8 40.3 176 543-730 326-517 (629)
197 KOG3616|consensus 98.5 0.0025 5.4E-08 68.5 38.6 140 47-195 666-819 (1636)
198 COG3898 Uncharacterized membra 98.5 0.00042 9.1E-09 69.0 30.1 202 47-301 89-296 (531)
199 KOG4555|consensus 98.5 4.5E-06 9.8E-11 68.8 14.0 103 587-696 45-147 (175)
200 COG1729 Uncharacterized protei 98.5 2.3E-06 5E-11 82.0 14.2 109 587-703 143-254 (262)
201 KOG4555|consensus 98.5 5.8E-06 1.3E-10 68.1 14.3 123 541-674 44-171 (175)
202 COG4105 ComL DNA uptake lipopr 98.5 4.9E-05 1.1E-09 72.3 22.4 185 41-301 33-237 (254)
203 PF13371 TPR_9: Tetratricopept 98.5 6.5E-07 1.4E-11 70.2 8.4 61 51-111 4-64 (73)
204 PF13371 TPR_9: Tetratricopept 98.5 5.7E-07 1.2E-11 70.5 7.9 65 627-702 3-67 (73)
205 COG4700 Uncharacterized protei 98.5 2.1E-05 4.5E-10 69.6 17.9 149 17-167 65-216 (251)
206 KOG1070|consensus 98.5 5.5E-05 1.2E-09 86.8 25.5 221 4-281 1454-1683(1710)
207 KOG2471|consensus 98.5 6.4E-05 1.4E-09 76.7 23.3 146 11-156 209-381 (696)
208 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 5E-07 1.1E-11 93.0 8.6 70 658-727 69-141 (453)
209 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 9.8E-07 2.1E-11 90.9 10.5 82 580-662 70-154 (453)
210 PF13512 TPR_18: Tetratricopep 98.4 5.4E-06 1.2E-10 71.5 13.3 109 584-700 9-135 (142)
211 COG4700 Uncharacterized protei 98.4 7.3E-05 1.6E-09 66.2 18.9 90 78-167 91-183 (251)
212 PF06552 TOM20_plant: Plant sp 98.4 4.8E-06 1E-10 74.0 11.6 97 556-667 7-117 (186)
213 PF07079 DUF1347: Protein of u 98.4 0.0047 1E-07 63.2 40.9 129 11-139 9-157 (549)
214 KOG2796|consensus 98.3 9.9E-05 2.1E-09 69.2 19.1 142 585-731 177-319 (366)
215 KOG2300|consensus 98.3 0.0086 1.9E-07 61.8 46.1 207 495-723 325-552 (629)
216 KOG1914|consensus 98.2 0.01 2.3E-07 62.1 39.7 137 584-730 327-467 (656)
217 KOG2796|consensus 98.2 4.4E-05 9.4E-10 71.5 14.1 137 7-143 176-319 (366)
218 KOG4507|consensus 98.2 0.0015 3.3E-08 68.5 26.5 107 592-709 614-721 (886)
219 KOG1586|consensus 98.2 0.00043 9.4E-09 64.0 19.9 190 54-302 26-229 (288)
220 KOG0985|consensus 98.2 0.016 3.5E-07 65.1 34.8 65 232-301 1102-1166(1666)
221 KOG2276|consensus 98.1 2.4E-06 5.1E-11 84.9 5.1 206 350-555 212-417 (473)
222 KOG4642|consensus 98.1 3.9E-05 8.5E-10 70.9 11.4 99 7-105 9-107 (284)
223 PF13428 TPR_14: Tetratricopep 98.1 8E-06 1.7E-10 55.9 4.9 44 664-707 1-44 (44)
224 KOG4642|consensus 98.0 2.9E-05 6.4E-10 71.7 9.4 94 589-693 14-107 (284)
225 KOG1914|consensus 98.0 0.031 6.6E-07 58.8 39.2 122 32-155 10-139 (656)
226 PF13431 TPR_17: Tetratricopep 98.0 5.2E-06 1.1E-10 52.6 2.7 32 687-718 2-33 (34)
227 KOG4507|consensus 98.0 0.00022 4.8E-09 74.5 15.4 99 13-111 217-318 (886)
228 PF13428 TPR_14: Tetratricopep 98.0 1.6E-05 3.4E-10 54.4 5.0 44 585-628 1-44 (44)
229 KOG2610|consensus 97.9 0.0013 2.8E-08 64.2 19.1 125 43-167 104-232 (491)
230 PF13431 TPR_17: Tetratricopep 97.9 9.8E-06 2.1E-10 51.3 3.1 33 607-639 1-33 (34)
231 KOG0545|consensus 97.9 0.00029 6.3E-09 65.4 13.7 105 585-700 178-300 (329)
232 KOG2610|consensus 97.9 0.00032 7E-09 68.2 14.1 157 547-725 110-274 (491)
233 KOG0545|consensus 97.9 0.00011 2.5E-09 68.0 10.5 103 8-110 178-298 (329)
234 KOG1585|consensus 97.9 0.0033 7.2E-08 58.8 19.3 123 45-167 34-173 (308)
235 KOG0376|consensus 97.8 4.1E-05 8.9E-10 78.9 7.7 117 624-751 9-125 (476)
236 PF00515 TPR_1: Tetratricopept 97.8 3.2E-05 6.9E-10 49.5 4.5 34 664-697 1-34 (34)
237 KOG1586|consensus 97.8 0.0024 5.2E-08 59.3 17.6 185 22-270 28-231 (288)
238 PF04184 ST7: ST7 protein; In 97.8 0.0018 3.8E-08 67.5 18.7 140 15-167 175-318 (539)
239 PF13281 DUF4071: Domain of un 97.8 0.0084 1.8E-07 61.9 23.3 183 41-269 140-340 (374)
240 PF05843 Suf: Suppressor of fo 97.8 0.00077 1.7E-08 68.6 15.6 135 10-144 3-141 (280)
241 KOG0376|consensus 97.7 5.9E-05 1.3E-09 77.7 6.9 109 47-155 9-117 (476)
242 KOG1585|consensus 97.7 0.0051 1.1E-07 57.6 18.2 205 498-721 36-250 (308)
243 PF07719 TPR_2: Tetratricopept 97.7 7.4E-05 1.6E-09 47.9 4.6 34 664-697 1-34 (34)
244 PF05843 Suf: Suppressor of fo 97.7 0.0027 5.9E-08 64.6 17.7 134 78-267 3-140 (280)
245 COG3118 Thioredoxin domain-con 97.6 0.0029 6.3E-08 61.5 16.0 153 10-164 136-292 (304)
246 PF00515 TPR_1: Tetratricopept 97.6 0.00012 2.7E-09 46.8 4.6 34 585-618 1-34 (34)
247 KOG0551|consensus 97.5 0.00086 1.9E-08 65.5 10.6 102 42-143 81-186 (390)
248 PF07719 TPR_2: Tetratricopept 97.5 0.00027 5.8E-09 45.2 4.9 34 585-618 1-34 (34)
249 PF04184 ST7: ST7 protein; In 97.5 0.003 6.6E-08 65.7 14.8 130 596-727 179-324 (539)
250 COG3118 Thioredoxin domain-con 97.5 0.014 3E-07 56.9 18.3 161 76-293 134-297 (304)
251 KOG0530|consensus 97.5 0.02 4.3E-07 54.4 18.5 231 19-300 54-301 (318)
252 COG2976 Uncharacterized protei 97.4 0.01 2.2E-07 54.0 15.8 132 10-143 55-192 (207)
253 KOG0551|consensus 97.4 0.0023 4.9E-08 62.7 12.6 99 539-648 80-182 (390)
254 KOG1550|consensus 97.4 0.048 1E-06 61.5 24.6 268 9-301 245-542 (552)
255 PF10345 Cohesin_load: Cohesin 97.4 0.47 1E-05 54.6 44.7 217 495-724 363-603 (608)
256 KOG1308|consensus 97.3 0.00018 3.8E-09 70.7 3.6 91 594-695 123-213 (377)
257 KOG1258|consensus 97.3 0.37 7.9E-06 52.1 39.0 172 543-736 300-479 (577)
258 KOG0985|consensus 97.3 0.53 1.1E-05 53.7 45.3 194 56-301 1089-1312(1666)
259 PF03704 BTAD: Bacterial trans 97.3 0.0049 1.1E-07 56.0 12.6 64 664-727 62-125 (146)
260 PF10300 DUF3808: Protein of u 97.3 0.0046 9.9E-08 67.8 14.2 117 21-137 246-374 (468)
261 PF10300 DUF3808: Protein of u 97.3 0.012 2.6E-07 64.5 17.4 118 553-692 246-375 (468)
262 PF13281 DUF4071: Domain of un 97.2 0.02 4.4E-07 59.1 17.5 144 544-699 183-340 (374)
263 COG2976 Uncharacterized protei 97.2 0.0052 1.1E-07 55.8 11.3 104 6-110 87-193 (207)
264 PF03704 BTAD: Bacterial trans 97.2 0.0067 1.5E-07 55.1 12.7 117 9-138 7-124 (146)
265 PF13181 TPR_8: Tetratricopept 97.2 0.00058 1.3E-08 43.6 3.9 32 665-696 2-33 (34)
266 KOG1308|consensus 97.1 0.00069 1.5E-08 66.6 5.5 91 51-141 123-213 (377)
267 PF02259 FAT: FAT domain; Int 97.1 0.12 2.5E-06 55.4 23.6 169 110-301 146-342 (352)
268 COG2909 MalT ATP-dependent tra 97.0 0.91 2E-05 51.6 30.0 173 544-726 501-687 (894)
269 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.58 1.3E-05 48.4 32.0 76 64-139 30-105 (660)
270 PF02259 FAT: FAT domain; Int 97.0 0.26 5.7E-06 52.7 24.3 131 581-711 142-305 (352)
271 KOG1550|consensus 96.9 0.79 1.7E-05 51.9 28.3 174 58-295 228-424 (552)
272 KOG0890|consensus 96.9 1.3 2.9E-05 55.9 30.6 145 582-728 1667-1834(2382)
273 PF13181 TPR_8: Tetratricopept 96.9 0.0019 4.1E-08 41.2 4.1 32 586-617 2-33 (34)
274 PF10345 Cohesin_load: Cohesin 96.8 1.6 3.4E-05 50.4 43.8 288 7-295 58-431 (608)
275 PRK15180 Vi polysaccharide bio 96.7 0.95 2.1E-05 47.2 32.8 62 682-743 760-821 (831)
276 PF12968 DUF3856: Domain of Un 96.7 0.11 2.4E-06 42.8 13.8 104 586-693 8-129 (144)
277 PF08424 NRDE-2: NRDE-2, neces 96.7 0.17 3.8E-06 52.6 19.4 135 92-264 47-184 (321)
278 PF08631 SPO22: Meiosis protei 96.7 0.71 1.5E-05 47.1 23.5 124 18-141 3-152 (278)
279 PF13176 TPR_7: Tetratricopept 96.7 0.003 6.5E-08 40.7 4.0 28 666-693 1-28 (36)
280 PF09613 HrpB1_HrpK: Bacterial 96.6 0.038 8.2E-07 49.2 11.5 86 7-92 9-94 (160)
281 COG2909 MalT ATP-dependent tra 96.6 2.1 4.5E-05 48.9 27.5 243 41-295 414-686 (894)
282 PF04781 DUF627: Protein of un 96.5 0.035 7.6E-07 45.6 10.0 103 14-139 2-107 (111)
283 COG3914 Spy Predicted O-linked 96.5 0.053 1.1E-06 58.0 13.6 129 577-715 57-193 (620)
284 COG0790 FOG: TPR repeat, SEL1 96.4 1.3 2.9E-05 45.7 24.1 134 17-156 50-199 (292)
285 PF13174 TPR_6: Tetratricopept 96.4 0.0043 9.3E-08 39.1 3.5 31 666-696 2-32 (33)
286 PF08424 NRDE-2: NRDE-2, neces 96.4 0.16 3.5E-06 52.9 17.0 119 518-647 7-130 (321)
287 COG0790 FOG: TPR repeat, SEL1 96.4 0.25 5.4E-06 51.1 18.4 149 553-730 90-269 (292)
288 PF09986 DUF2225: Uncharacteri 96.4 0.054 1.2E-06 52.1 12.1 94 597-694 89-195 (214)
289 PRK15180 Vi polysaccharide bio 96.3 1.7 3.6E-05 45.5 27.5 129 16-144 297-425 (831)
290 COG5107 RNA14 Pre-mRNA 3'-end 96.3 1.6 3.5E-05 45.3 37.2 134 596-740 408-544 (660)
291 PF13174 TPR_6: Tetratricopept 96.3 0.0068 1.5E-07 38.2 4.0 32 587-618 2-33 (33)
292 PF04781 DUF627: Protein of un 96.3 0.091 2E-06 43.3 11.0 99 591-693 2-107 (111)
293 KOG3824|consensus 96.1 0.02 4.3E-07 55.4 7.7 71 49-119 123-193 (472)
294 PF13176 TPR_7: Tetratricopept 96.1 0.01 2.2E-07 38.3 4.0 28 587-614 1-28 (36)
295 KOG0530|consensus 96.1 0.25 5.5E-06 47.2 14.5 173 52-280 53-233 (318)
296 PF09986 DUF2225: Uncharacteri 96.1 0.089 1.9E-06 50.6 11.8 94 632-730 90-197 (214)
297 PF09613 HrpB1_HrpK: Bacterial 96.0 0.11 2.5E-06 46.2 11.3 85 43-127 11-95 (160)
298 PF07079 DUF1347: Protein of u 96.0 0.45 9.8E-06 49.4 16.8 131 3-136 374-521 (549)
299 PF14853 Fis1_TPR_C: Fis1 C-te 96.0 0.041 8.9E-07 38.8 6.7 43 665-707 2-44 (53)
300 KOG3824|consensus 96.0 0.045 9.7E-07 53.2 9.1 70 670-739 122-191 (472)
301 COG4649 Uncharacterized protei 95.9 1 2.2E-05 40.4 16.4 143 11-154 61-210 (221)
302 PF14561 TPR_20: Tetratricopep 95.9 0.051 1.1E-06 43.8 8.1 74 652-725 10-85 (90)
303 TIGR02561 HrpB1_HrpK type III 95.9 0.13 2.8E-06 44.9 10.5 85 7-91 9-93 (153)
304 KOG2396|consensus 95.7 3.4 7.5E-05 43.8 34.6 91 26-116 89-180 (568)
305 KOG1258|consensus 95.7 4.2 9.1E-05 44.4 39.6 273 25-298 62-361 (577)
306 PF12968 DUF3856: Domain of Un 95.7 0.39 8.5E-06 39.7 11.9 100 5-104 4-128 (144)
307 PF08631 SPO22: Meiosis protei 95.6 3 6.6E-05 42.5 24.1 53 87-139 4-65 (278)
308 PF04910 Tcf25: Transcriptiona 95.6 0.34 7.3E-06 51.1 14.9 165 103-301 33-226 (360)
309 KOG3783|consensus 95.6 4.2 9.1E-05 43.8 22.3 241 59-301 250-524 (546)
310 PF04910 Tcf25: Transcriptiona 95.5 1.2 2.5E-05 47.1 18.7 127 34-160 32-194 (360)
311 smart00028 TPR Tetratricopepti 95.5 0.019 4.1E-07 35.7 3.5 32 665-696 2-33 (34)
312 PF14561 TPR_20: Tetratricopep 95.5 0.17 3.6E-06 40.9 9.4 43 65-107 11-53 (90)
313 KOG0890|consensus 95.4 12 0.00027 47.9 42.9 129 13-147 1388-1520(2382)
314 PRK10941 hypothetical protein; 95.3 0.13 2.9E-06 51.2 10.1 78 665-742 182-259 (269)
315 KOG2041|consensus 95.2 6.4 0.00014 43.5 22.4 136 12-167 738-875 (1189)
316 PF14853 Fis1_TPR_C: Fis1 C-te 95.0 0.12 2.6E-06 36.5 6.3 47 699-745 2-48 (53)
317 PRK10941 hypothetical protein; 95.0 0.21 4.6E-06 49.7 10.5 77 620-707 182-258 (269)
318 smart00028 TPR Tetratricopepti 94.9 0.042 9.1E-07 34.0 3.7 32 586-617 2-33 (34)
319 PF13374 TPR_10: Tetratricopep 94.9 0.054 1.2E-06 36.3 4.3 30 664-693 2-31 (42)
320 TIGR02561 HrpB1_HrpK type III 94.8 0.38 8.2E-06 42.1 10.0 84 44-127 12-95 (153)
321 COG5159 RPN6 26S proteasome re 94.7 4.6 9.9E-05 39.5 18.8 156 12-167 7-188 (421)
322 KOG1839|consensus 94.7 0.29 6.3E-06 57.9 12.1 175 544-726 936-1127(1236)
323 PF15015 NYD-SP12_N: Spermatog 94.7 0.57 1.2E-05 48.1 12.4 56 80-135 232-287 (569)
324 KOG1464|consensus 94.6 0.8 1.7E-05 44.0 12.6 131 544-678 149-286 (440)
325 COG3914 Spy Predicted O-linked 94.5 1.1 2.5E-05 48.3 14.9 139 20-158 42-190 (620)
326 COG4649 Uncharacterized protei 94.5 3.4 7.4E-05 37.2 15.3 142 81-279 63-211 (221)
327 KOG1310|consensus 94.3 0.21 4.6E-06 52.5 8.9 98 46-143 378-478 (758)
328 KOG2041|consensus 94.3 11 0.00023 41.9 32.9 137 110-287 692-841 (1189)
329 KOG3364|consensus 94.1 1.4 3.1E-05 37.7 11.6 73 619-702 32-109 (149)
330 COG4976 Predicted methyltransf 94.1 0.085 1.9E-06 49.2 4.9 60 85-144 4-63 (287)
331 PF10602 RPN7: 26S proteasome 94.0 0.83 1.8E-05 42.6 11.6 99 42-140 36-143 (177)
332 KOG3364|consensus 94.0 0.73 1.6E-05 39.4 9.8 82 664-745 32-118 (149)
333 KOG1310|consensus 93.9 0.21 4.5E-06 52.6 7.9 106 4-109 370-478 (758)
334 KOG1839|consensus 93.9 0.95 2.1E-05 53.8 13.9 161 7-167 931-1122(1236)
335 KOG4814|consensus 93.9 0.51 1.1E-05 51.1 10.7 91 47-137 359-455 (872)
336 KOG2396|consensus 93.8 11 0.00024 40.3 34.8 94 60-153 89-183 (568)
337 KOG1463|consensus 93.6 9 0.00019 38.7 22.1 265 10-301 6-320 (411)
338 PF13374 TPR_10: Tetratricopep 93.6 0.16 3.4E-06 33.9 4.5 29 586-614 3-31 (42)
339 COG4976 Predicted methyltransf 93.5 0.12 2.5E-06 48.4 4.7 57 53-109 6-62 (287)
340 KOG4814|consensus 93.4 0.58 1.3E-05 50.6 10.2 106 620-730 355-460 (872)
341 KOG3807|consensus 93.4 6.8 0.00015 39.1 16.6 139 11-161 187-328 (556)
342 PF10602 RPN7: 26S proteasome 93.3 1 2.2E-05 42.0 10.8 100 585-693 36-142 (177)
343 PRK13184 pknD serine/threonine 93.2 24 0.00052 42.3 32.2 94 16-110 483-586 (932)
344 PF10579 Rapsyn_N: Rapsyn N-te 93.2 0.87 1.9E-05 34.8 8.0 66 6-71 4-72 (80)
345 PF12862 Apc5: Anaphase-promot 92.4 1.4 3.1E-05 36.0 9.4 61 629-694 8-71 (94)
346 KOG1464|consensus 92.4 11 0.00024 36.5 16.3 119 20-138 39-173 (440)
347 PF04053 Coatomer_WDAD: Coatom 92.3 2.1 4.6E-05 46.5 13.1 102 17-136 270-373 (443)
348 COG5191 Uncharacterized conser 92.0 0.35 7.6E-06 47.4 6.0 88 66-153 97-185 (435)
349 KOG2422|consensus 91.6 8.4 0.00018 41.8 15.7 174 89-301 251-452 (665)
350 PF04053 Coatomer_WDAD: Coatom 91.5 3.4 7.3E-05 44.9 13.5 129 120-295 271-400 (443)
351 COG5191 Uncharacterized conser 91.5 0.48 1E-05 46.5 6.2 86 32-117 97-183 (435)
352 KOG1538|consensus 91.2 6.9 0.00015 42.8 14.8 51 242-295 781-831 (1081)
353 PF07720 TPR_3: Tetratricopept 90.9 0.72 1.6E-05 29.5 4.6 33 665-697 2-36 (36)
354 PRK13184 pknD serine/threonine 90.6 12 0.00026 44.7 17.7 100 509-620 488-587 (932)
355 KOG0529|consensus 90.3 17 0.00037 38.0 16.2 146 11-156 31-195 (421)
356 KOG0546|consensus 90.3 0.66 1.4E-05 46.8 6.1 89 664-752 275-363 (372)
357 COG3629 DnrI DNA-binding trans 90.0 4.5 9.8E-05 40.4 11.7 65 233-297 152-216 (280)
358 KOG1538|consensus 90.0 13 0.00028 40.8 15.6 209 11-260 588-830 (1081)
359 KOG3807|consensus 90.0 23 0.00049 35.6 16.8 62 666-727 277-340 (556)
360 KOG2581|consensus 89.9 6.4 0.00014 40.7 12.5 140 549-697 135-280 (493)
361 PF15015 NYD-SP12_N: Spermatog 89.7 2.2 4.7E-05 44.0 9.2 55 113-167 231-285 (569)
362 PF10516 SHNi-TPR: SHNi-TPR; 89.6 0.52 1.1E-05 30.5 3.2 29 665-693 2-30 (38)
363 KOG0529|consensus 89.5 11 0.00024 39.3 14.1 123 577-710 55-195 (421)
364 PF07721 TPR_4: Tetratricopept 88.9 0.55 1.2E-05 27.4 2.8 23 666-688 3-25 (26)
365 KOG2561|consensus 88.5 14 0.0003 38.7 13.8 129 538-693 161-296 (568)
366 KOG2422|consensus 88.4 26 0.00057 38.3 16.3 101 55-155 251-388 (665)
367 KOG3783|consensus 88.4 42 0.00091 36.6 22.2 91 25-117 250-344 (546)
368 PF07721 TPR_4: Tetratricopept 88.4 0.53 1.2E-05 27.5 2.5 24 699-722 2-25 (26)
369 PF12862 Apc5: Anaphase-promot 88.4 4.7 0.0001 32.9 9.0 54 595-648 8-70 (94)
370 PF09670 Cas_Cas02710: CRISPR- 87.9 9.3 0.0002 40.9 13.2 65 7-71 130-198 (379)
371 PF10516 SHNi-TPR: SHNi-TPR; 87.9 0.9 1.9E-05 29.4 3.4 27 621-647 3-29 (38)
372 smart00299 CLH Clathrin heavy 87.7 15 0.00032 32.8 12.7 33 90-122 21-53 (140)
373 COG2912 Uncharacterized conser 87.6 6.4 0.00014 38.8 10.6 72 78-149 183-254 (269)
374 COG2912 Uncharacterized conser 87.2 5.5 0.00012 39.2 9.9 74 666-739 183-256 (269)
375 PF11207 DUF2989: Protein of u 87.2 6.4 0.00014 36.9 9.8 76 54-130 118-198 (203)
376 COG3629 DnrI DNA-binding trans 87.1 3.2 6.9E-05 41.4 8.5 80 24-105 137-216 (280)
377 KOG0128|consensus 86.3 70 0.0015 36.9 28.6 72 667-738 464-537 (881)
378 PF07720 TPR_3: Tetratricopept 86.3 2.6 5.6E-05 27.0 4.8 32 586-617 2-35 (36)
379 PRK11619 lytic murein transgly 86.2 72 0.0016 37.0 42.6 145 549-724 321-465 (644)
380 PF11207 DUF2989: Protein of u 85.9 8.2 0.00018 36.2 9.9 56 662-718 139-198 (203)
381 PF10579 Rapsyn_N: Rapsyn N-te 84.2 11 0.00023 29.2 8.0 24 86-109 16-39 (80)
382 COG1747 Uncharacterized N-term 83.2 73 0.0016 34.5 20.5 87 50-139 74-160 (711)
383 cd02682 MIT_AAA_Arch MIT: doma 82.8 7.4 0.00016 29.9 6.8 46 620-669 7-52 (75)
384 KOG0546|consensus 81.7 2.9 6.3E-05 42.4 5.5 114 590-714 227-359 (372)
385 KOG2581|consensus 81.0 77 0.0017 33.3 18.4 127 17-143 135-280 (493)
386 KOG4279|consensus 81.0 61 0.0013 36.7 15.3 148 41-190 200-367 (1226)
387 COG3947 Response regulator con 80.4 24 0.00052 35.0 10.9 61 587-647 281-341 (361)
388 COG3947 Response regulator con 80.2 6.5 0.00014 38.7 7.1 60 666-725 281-340 (361)
389 KOG0276|consensus 80.1 27 0.00058 38.4 12.1 111 587-724 616-747 (794)
390 PF00244 14-3-3: 14-3-3 protei 79.9 49 0.0011 32.6 13.5 49 250-298 142-199 (236)
391 PF04190 DUF410: Protein of un 79.1 74 0.0016 32.0 16.2 68 617-689 47-115 (260)
392 KOG2114|consensus 78.9 51 0.0011 38.0 14.2 111 50-167 342-454 (933)
393 PF14863 Alkyl_sulf_dimr: Alky 78.7 7.4 0.00016 34.4 6.5 48 9-56 71-118 (141)
394 PF11817 Foie-gras_1: Foie gra 78.2 76 0.0017 31.6 16.2 62 234-295 178-245 (247)
395 PF10373 EST1_DNA_bind: Est1 D 77.8 7.7 0.00017 39.6 7.7 55 577-631 8-62 (278)
396 cd02682 MIT_AAA_Arch MIT: doma 77.5 13 0.00027 28.6 6.5 51 540-594 6-56 (75)
397 COG4455 ImpE Protein of avirul 76.4 19 0.0004 34.1 8.5 60 16-75 9-68 (273)
398 PF10373 EST1_DNA_bind: Est1 D 76.3 8.6 0.00019 39.3 7.6 59 652-710 4-62 (278)
399 KOG0276|consensus 76.2 35 0.00076 37.5 11.6 144 17-192 595-746 (794)
400 PF12854 PPR_1: PPR repeat 76.1 6.2 0.00013 24.8 3.9 26 664-689 7-32 (34)
401 KOG1920|consensus 75.6 75 0.0016 38.3 14.9 91 626-724 959-1052(1265)
402 smart00386 HAT HAT (Half-A-TPR 74.4 7.5 0.00016 23.6 4.2 30 599-628 1-30 (33)
403 KOG2063|consensus 74.4 1.8E+02 0.004 34.6 17.7 173 10-191 506-722 (877)
404 PF12739 TRAPPC-Trs85: ER-Golg 73.8 1.3E+02 0.0029 32.7 16.1 28 44-71 210-237 (414)
405 PF10255 Paf67: RNA polymerase 73.8 6.3 0.00014 41.8 5.6 60 666-726 124-192 (404)
406 smart00386 HAT HAT (Half-A-TPR 73.5 9 0.00019 23.3 4.4 28 22-49 1-28 (33)
407 TIGR03504 FimV_Cterm FimV C-te 73.4 7.3 0.00016 26.3 3.9 25 12-36 3-27 (44)
408 TIGR02710 CRISPR-associated pr 72.4 1E+02 0.0022 32.7 13.9 60 8-67 130-196 (380)
409 PF12854 PPR_1: PPR repeat 72.3 7.4 0.00016 24.4 3.6 28 697-724 6-33 (34)
410 PF10255 Paf67: RNA polymerase 71.9 7.1 0.00015 41.4 5.5 60 78-138 124-192 (404)
411 TIGR03504 FimV_Cterm FimV C-te 71.8 7.5 0.00016 26.2 3.7 25 668-692 3-27 (44)
412 COG4455 ImpE Protein of avirul 71.6 23 0.00051 33.5 7.9 71 627-708 9-82 (273)
413 PF13041 PPR_2: PPR repeat fam 71.2 10 0.00023 26.3 4.6 29 665-693 4-32 (50)
414 PRK11619 lytic murein transgly 69.9 2.2E+02 0.0048 33.1 35.4 146 9-163 34-182 (644)
415 PF11817 Foie-gras_1: Foie gra 69.9 37 0.0008 33.9 9.9 58 78-135 180-243 (247)
416 PF00244 14-3-3: 14-3-3 protei 69.9 48 0.001 32.7 10.5 49 680-728 142-199 (236)
417 PF13041 PPR_2: PPR repeat fam 69.8 21 0.00046 24.7 6.0 42 585-627 3-46 (50)
418 PF09670 Cas_Cas02710: CRISPR- 69.5 85 0.0018 33.6 13.1 60 544-614 135-198 (379)
419 KOG4014|consensus 68.7 98 0.0021 28.6 12.0 137 544-709 38-211 (248)
420 COG1747 Uncharacterized N-term 68.3 1.9E+02 0.004 31.6 26.5 209 73-302 63-293 (711)
421 PF04190 DUF410: Protein of un 67.2 1.4E+02 0.0031 29.9 20.0 137 3-139 5-170 (260)
422 KOG1463|consensus 65.0 1.7E+02 0.0037 30.0 26.3 92 544-640 213-308 (411)
423 PF09797 NatB_MDM20: N-acetylt 64.6 31 0.00066 36.9 8.8 44 58-101 199-242 (365)
424 KOG0128|consensus 64.3 2.9E+02 0.0062 32.3 33.5 115 24-139 95-219 (881)
425 KOG2561|consensus 64.2 34 0.00074 36.0 8.2 104 623-726 167-295 (568)
426 PF12739 TRAPPC-Trs85: ER-Golg 64.1 2.2E+02 0.0048 31.0 17.4 29 78-106 210-238 (414)
427 KOG4151|consensus 63.8 22 0.00047 40.5 7.3 118 589-717 57-180 (748)
428 cd02683 MIT_1 MIT: domain cont 63.7 64 0.0014 25.1 7.9 38 623-664 10-47 (77)
429 KOG2114|consensus 61.9 3.2E+02 0.0069 32.0 19.6 167 14-191 340-514 (933)
430 PF14863 Alkyl_sulf_dimr: Alky 61.8 33 0.00072 30.4 6.8 52 665-716 71-122 (141)
431 PF13226 DUF4034: Domain of un 60.2 1.2E+02 0.0025 30.7 11.0 142 14-167 6-156 (277)
432 PF08311 Mad3_BUB1_I: Mad3/BUB 60.1 1.1E+02 0.0025 26.5 9.9 84 634-725 41-126 (126)
433 COG5536 BET4 Protein prenyltra 58.2 68 0.0015 31.8 8.6 130 24-153 90-236 (328)
434 KOG0686|consensus 57.7 96 0.0021 32.6 10.0 110 44-153 152-280 (466)
435 KOG2758|consensus 57.4 2.3E+02 0.0049 28.9 15.6 68 234-301 252-321 (432)
436 smart00299 CLH Clathrin heavy 57.3 1.4E+02 0.003 26.4 14.5 119 18-155 17-136 (140)
437 PF05053 Menin: Menin; InterP 56.9 2.7E+02 0.0058 31.0 13.5 47 601-647 295-346 (618)
438 PF01535 PPR: PPR repeat; Int 56.8 19 0.0004 21.5 3.3 25 667-691 3-27 (31)
439 TIGR00756 PPR pentatricopeptid 56.6 17 0.00036 22.4 3.2 24 703-726 5-28 (35)
440 PF01535 PPR: PPR repeat; Int 56.1 18 0.0004 21.5 3.2 26 588-613 3-28 (31)
441 COG5159 RPN6 26S proteasome re 56.0 2.2E+02 0.0048 28.4 25.5 51 114-164 7-65 (421)
442 KOG1920|consensus 52.7 5.3E+02 0.011 31.8 17.3 13 123-135 893-905 (1265)
443 PF13812 PPR_3: Pentatricopept 52.5 24 0.00051 21.7 3.4 24 667-690 4-27 (34)
444 PF07219 HemY_N: HemY protein 51.7 63 0.0014 27.2 6.7 47 44-90 61-107 (108)
445 KOG0687|consensus 51.7 1.2E+02 0.0026 30.9 9.3 104 541-649 105-211 (393)
446 cd02677 MIT_SNX15 MIT: domain 51.5 30 0.00066 26.7 4.3 27 632-662 19-45 (75)
447 PHA02537 M terminase endonucle 51.3 35 0.00077 33.1 5.7 21 595-615 93-113 (230)
448 TIGR00756 PPR pentatricopeptid 51.2 31 0.00066 21.1 3.8 28 666-693 2-29 (35)
449 PF04212 MIT: MIT (microtubule 50.3 1.1E+02 0.0023 23.1 7.6 37 622-662 8-44 (69)
450 cd02681 MIT_calpain7_1 MIT: do 49.8 60 0.0013 25.2 5.6 15 711-725 19-33 (76)
451 PF10952 DUF2753: Protein of u 49.7 1.7E+02 0.0036 25.1 9.3 69 623-692 5-78 (140)
452 PF04212 MIT: MIT (microtubule 49.3 69 0.0015 24.1 6.0 27 667-693 8-34 (69)
453 COG5187 RPN7 26S proteasome re 48.7 2.2E+02 0.0048 28.5 10.4 158 506-681 89-249 (412)
454 KOG4151|consensus 48.4 54 0.0012 37.6 7.2 101 48-148 59-165 (748)
455 smart00101 14_3_3 14-3-3 homol 48.0 2.9E+02 0.0063 27.4 13.2 173 543-726 4-199 (244)
456 PRK15490 Vi polysaccharide bio 47.3 3.3E+02 0.0071 30.9 12.9 66 657-724 35-100 (578)
457 PF09797 NatB_MDM20: N-acetylt 47.0 1.9E+02 0.0042 30.9 11.2 47 90-136 197-243 (365)
458 PF02064 MAS20: MAS20 protein 46.9 48 0.001 28.4 5.2 38 703-740 68-105 (121)
459 PF09205 DUF1955: Domain of un 46.6 2E+02 0.0044 25.1 8.8 64 233-296 85-148 (161)
460 COG5536 BET4 Protein prenyltra 45.9 3.2E+02 0.007 27.3 12.4 151 577-738 58-233 (328)
461 cd02681 MIT_calpain7_1 MIT: do 45.4 53 0.0012 25.4 4.7 32 5-36 3-34 (76)
462 KOG4014|consensus 44.6 2.6E+02 0.0057 25.9 13.6 54 243-298 177-234 (248)
463 KOG0687|consensus 43.3 3.9E+02 0.0084 27.5 12.4 29 76-104 104-132 (393)
464 KOG4322|consensus 43.0 2.6E+02 0.0056 29.9 10.5 159 3-162 268-457 (482)
465 PF13226 DUF4034: Domain of un 42.6 2.4E+02 0.0051 28.6 10.0 75 49-123 7-90 (277)
466 KOG4521|consensus 41.9 7.6E+02 0.016 30.5 15.4 30 76-105 920-949 (1480)
467 PF11846 DUF3366: Domain of un 41.5 86 0.0019 29.8 6.8 51 250-301 127-177 (193)
468 PF10952 DUF2753: Protein of u 40.9 1E+02 0.0023 26.3 6.0 26 11-36 4-29 (140)
469 PF05979 DUF896: Bacterial pro 40.9 19 0.00042 26.6 1.7 25 879-903 9-33 (65)
470 cd02680 MIT_calpain7_2 MIT: do 40.5 53 0.0011 25.4 4.0 33 57-104 2-34 (75)
471 KOG1497|consensus 40.4 3.5E+02 0.0076 27.7 10.5 100 5-104 100-212 (399)
472 smart00745 MIT Microtubule Int 40.1 72 0.0016 24.7 5.0 34 3-36 3-36 (77)
473 cd02683 MIT_1 MIT: domain cont 39.8 1.8E+02 0.0038 22.7 6.9 38 544-585 10-47 (77)
474 smart00671 SEL1 Sel1-like repe 39.8 62 0.0013 20.0 3.9 28 666-693 3-34 (36)
475 smart00777 Mad3_BUB1_I Mad3/BU 39.1 2.2E+02 0.0048 24.7 8.0 60 658-723 63-124 (125)
476 PF04097 Nic96: Nup93/Nic96; 38.3 6.9E+02 0.015 29.0 19.2 38 146-193 416-453 (613)
477 smart00745 MIT Microtubule Int 38.1 1.9E+02 0.004 22.3 8.0 34 625-662 14-47 (77)
478 KOG2063|consensus 37.6 8.1E+02 0.018 29.6 17.0 113 44-156 506-638 (877)
479 PF08238 Sel1: Sel1 repeat; I 37.6 74 0.0016 20.2 4.1 13 680-692 24-36 (39)
480 TIGR03362 VI_chp_7 type VI sec 37.6 4.8E+02 0.01 26.9 16.0 151 16-174 107-280 (301)
481 PRK15490 Vi polysaccharide bio 37.6 2.7E+02 0.0058 31.5 10.4 78 21-100 21-98 (578)
482 PF10938 YfdX: YfdX protein; 37.5 1.8E+02 0.004 26.4 7.8 102 623-728 6-147 (155)
483 cd02677 MIT_SNX15 MIT: domain 36.7 74 0.0016 24.6 4.4 32 5-36 3-34 (75)
484 PHA02537 M terminase endonucle 36.0 60 0.0013 31.6 4.7 93 51-143 92-211 (230)
485 PF04840 Vps16_C: Vps16, C-ter 35.7 4.7E+02 0.01 27.3 11.4 112 7-135 176-287 (319)
486 PF08311 Mad3_BUB1_I: Mad3/BUB 35.2 3E+02 0.0065 23.9 11.5 44 94-137 81-126 (126)
487 PF11846 DUF3366: Domain of un 35.0 1.2E+02 0.0026 28.8 6.7 50 92-142 127-176 (193)
488 PF15337 Vasculin: Vascular pr 34.9 25 0.00054 27.8 1.5 13 885-897 30-42 (97)
489 PF10938 YfdX: YfdX protein; 34.9 3.5E+02 0.0076 24.6 9.8 28 9-36 3-30 (155)
490 KOG2758|consensus 34.6 5.2E+02 0.011 26.5 15.3 195 516-732 115-322 (432)
491 PF02184 HAT: HAT (Half-A-TPR) 34.2 95 0.0021 19.3 3.6 27 600-627 2-28 (32)
492 PRK12798 chemotaxis protein; R 33.9 6.3E+02 0.014 27.2 22.7 199 75-294 111-321 (421)
493 TIGR02710 CRISPR-associated pr 33.5 6.2E+02 0.013 27.0 14.1 55 81-135 135-196 (380)
494 cd02656 MIT MIT: domain contai 33.1 2.2E+02 0.0049 21.8 7.0 34 625-662 12-45 (75)
495 KOG4521|consensus 33.0 1E+03 0.022 29.4 14.3 30 42-71 920-949 (1480)
496 PRK01631 hypothetical protein; 32.7 40 0.00086 25.8 2.2 25 879-903 10-34 (76)
497 PF07219 HemY_N: HemY protein 31.5 2E+02 0.0043 24.1 6.7 50 76-125 59-108 (108)
498 cd02678 MIT_VPS4 MIT: domain c 31.5 1.2E+02 0.0025 23.5 4.8 35 3-37 1-35 (75)
499 PRK02539 hypothetical protein; 31.1 43 0.00093 26.3 2.2 25 879-903 11-35 (85)
500 PF12753 Nro1: Nuclear pore co 31.0 1.2E+02 0.0026 32.0 6.0 47 680-728 334-392 (404)
No 1
>KOG4626|consensus
Probab=100.00 E-value=8.5e-53 Score=423.30 Aligned_cols=548 Identities=38% Similarity=0.564 Sum_probs=462.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
-....+.+|...++.|+|.+|++++..+...+|.+.+.+..++.++++..+++.....-..+++.+|..++++.++|.++
T Consensus 47 ~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 47 GSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANIL 126 (966)
T ss_pred cchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHH
Q psy17306 87 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDL 166 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 166 (904)
...|++++|+..|+.+++++|+..++|+++|.++...|+.+.|..+|..+++++|+...+...+|.++...|+..+|..+
T Consensus 127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHH
Q psy17306 167 YCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE 246 (904)
Q Consensus 167 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~ 246 (904)
| .+++...|..+.+|.+||.++..
T Consensus 207 Y--------------------------------------------------------lkAi~~qp~fAiawsnLg~~f~~ 230 (966)
T KOG4626|consen 207 Y--------------------------------------------------------LKAIETQPCFAIAWSNLGCVFNA 230 (966)
T ss_pred H--------------------------------------------------------HHHHhhCCceeeeehhcchHHhh
Confidence 8 69999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhh
Q psy17306 247 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG 326 (904)
Q Consensus 247 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~ 326 (904)
+|+...|+..|+++++++|..+++|++||.+|...+.+++|+..|.+++.+.|++
T Consensus 231 ~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~------------------------- 285 (966)
T KOG4626|consen 231 QGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH------------------------- 285 (966)
T ss_pred cchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc-------------------------
Confidence 9999999999999999999999999999999999999999999999999999998
Q ss_pred hhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCc
Q psy17306 327 ALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEP 406 (904)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 406 (904)
+.++.+++.+|..+|.
T Consensus 286 ----------------------------------------------------A~a~gNla~iYyeqG~------------ 301 (966)
T KOG4626|consen 286 ----------------------------------------------------AVAHGNLACIYYEQGL------------ 301 (966)
T ss_pred ----------------------------------------------------hhhccceEEEEecccc------------
Confidence 4444555555555544
Q ss_pred ccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCC
Q psy17306 407 LGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPN 485 (904)
Q Consensus 407 ~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (904)
++.||..|++++++ |.++++ |.++
T Consensus 302 -----------ldlAI~~Ykral~~~P~F~~A-----------y~Nl--------------------------------- 326 (966)
T KOG4626|consen 302 -----------LDLAIDTYKRALELQPNFPDA-----------YNNL--------------------------------- 326 (966)
T ss_pred -----------HHHHHHHHHHHHhcCCCchHH-----------HhHH---------------------------------
Confidence 89999999999999 999887 4433
Q ss_pred CcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHH
Q psy17306 486 QTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECR 565 (904)
Q Consensus 486 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 565 (904)
...+.+.+...++...+.+++...|++++.. +++|.++..+|.+++|..+|.+
T Consensus 327 -----------------anALkd~G~V~ea~~cYnkaL~l~p~hadam----------~NLgni~~E~~~~e~A~~ly~~ 379 (966)
T KOG4626|consen 327 -----------------ANALKDKGSVTEAVDCYNKALRLCPNHADAM----------NNLGNIYREQGKIEEATRLYLK 379 (966)
T ss_pred -----------------HHHHHhccchHHHHHHHHHHHHhCCccHHHH----------HHHHHHHHHhccchHHHHHHHH
Confidence 2233444556666677788899999999988 9999999999999999999999
Q ss_pred HhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17306 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 645 (904)
Q Consensus 566 ~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 645 (904)
+++..|..+.++.+||.+|.++|++++|+.+|+.++++.|..++++.|+|..|-.+|+.+.|++
T Consensus 380 -----------al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q----- 443 (966)
T KOG4626|consen 380 -----------ALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQ----- 443 (966)
T ss_pred -----------HHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHH-----
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 646 LQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 646 l~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
++.+++..+|..++++.+||.+|...|+..+|+..|+.+|+++|+.++++.|++.++.-..+|.+=-+.+.+..
T Consensus 444 ------~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~ 517 (966)
T KOG4626|consen 444 ------CYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLV 517 (966)
T ss_pred ------HHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999877766665444444333
Q ss_pred cccCC-----------h-------hhHHHHHHHHHHHHHH-HHHHHHHcCC---CCCccccccCCCcccccccCchhhhh
Q psy17306 726 YFMIT-----------D-------EDIDVILERCEAKTEE-LNKKFEQLGE---SSLRDFTLDAPTQSVYKFEGEDYREK 783 (904)
Q Consensus 726 ~~~~~-----------~-------~~~~~~l~~~~~~~~~-~~~~~~~l~~---~~~~~~~~~~~~~~~y~~~g~~~~~~ 783 (904)
++..+ + -+-...++... +-+. --.+...++. .++.+++.. ...-..+|.+.||-
T Consensus 518 sivrdql~~~rlpsvhP~hsm~ypl~~~~~~aia~-k~a~~c~~~~~~~~k~pyth~~~l~~~-~~rlrIGYvSsDFg-- 593 (966)
T KOG4626|consen 518 SIVRDQLEKNRLPSVHPHHSMLYPLSHILRKAIAA-KHANLCLDKVHVLGKPPYTHPDNLKVK-EGRLRIGYVSSDFG-- 593 (966)
T ss_pred HHHHHHHhhhcCCccCcccccccccchHHHHHHHH-HHhhhhHHHHHhccCCCCCChhhCCCC-cCceEEEeeccccc--
Confidence 22111 0 00011111111 1111 1122233443 344554432 13347799999994
Q ss_pred hccCCCccccCCchhhh-hhhcchhHH
Q psy17306 784 QKIVPIGHWIEPPKRER-KANYAVDAY 809 (904)
Q Consensus 784 ~~~~~~~~w~~~~~~e~-~~~~~~~~~ 809 (904)
.||..+.+.....-| +..|+|-||
T Consensus 594 --nHp~Shlmqsv~gmHdr~kveVfcY 618 (966)
T KOG4626|consen 594 --NHPTSHLMQSVPGMHDRSKVEVFCY 618 (966)
T ss_pred --CCchHHHhccCcCcCCccceEEEEE
Confidence 477777776666655 566776443
No 2
>KOG4626|consensus
Probab=100.00 E-value=1.9e-47 Score=384.84 Aligned_cols=407 Identities=29% Similarity=0.408 Sum_probs=370.4
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHH
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLG 83 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 83 (904)
.|+.++++-..|.++...|++++|+..|+.+++..|+..++|..+|.++...|+.+.|..+|..++.++|....+...+|
T Consensus 112 ~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lg 191 (966)
T KOG4626|consen 112 NPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLG 191 (966)
T ss_pred cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchh
Confidence 46788888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHH
Q psy17306 84 NVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEA 163 (904)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 163 (904)
.++..+|+..+|..+|.++++..|..+.+|.++|-++...|+...|+..|+++++++|+..+++++||.+|...+.+++|
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHH
Q psy17306 164 KDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNV 243 (904)
Q Consensus 164 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~ 243 (904)
+.+| .+++...|+.+.++.++|.+
T Consensus 272 vs~Y--------------------------------------------------------~rAl~lrpn~A~a~gNla~i 295 (966)
T KOG4626|consen 272 VSCY--------------------------------------------------------LRALNLRPNHAVAHGNLACI 295 (966)
T ss_pred HHHH--------------------------------------------------------HHHHhcCCcchhhccceEEE
Confidence 8888 68899999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHH
Q psy17306 244 YKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALW 323 (904)
Q Consensus 244 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~ 323 (904)
|+.+|..+-|+..|++++++.|..++++.++|.++...|+..+|..+|.+++.+.|++
T Consensus 296 YyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h---------------------- 353 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH---------------------- 353 (966)
T ss_pred EeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc----------------------
Confidence 9999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccc
Q psy17306 324 RRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKD 403 (904)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~ 403 (904)
+++.++||.++...++
T Consensus 354 -------------------------------------------------------adam~NLgni~~E~~~--------- 369 (966)
T KOG4626|consen 354 -------------------------------------------------------ADAMNNLGNIYREQGK--------- 369 (966)
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHhcc---------
Confidence 5666777776655554
Q ss_pred cCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcc
Q psy17306 404 VEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRI 482 (904)
Q Consensus 404 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (904)
+++|+..|.++++. |+...+
T Consensus 370 --------------~e~A~~ly~~al~v~p~~aaa--------------------------------------------- 390 (966)
T KOG4626|consen 370 --------------IEEATRLYLKALEVFPEFAAA--------------------------------------------- 390 (966)
T ss_pred --------------chHHHHHHHHHHhhChhhhhh---------------------------------------------
Confidence 78888888888877 554433
Q ss_pred cCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHH
Q psy17306 483 VPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTF 562 (904)
Q Consensus 483 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 562 (904)
.+++|.+|.++|++++|+..
T Consensus 391 ------------------------------------------------------------~nNLa~i~kqqgnl~~Ai~~ 410 (966)
T KOG4626|consen 391 ------------------------------------------------------------HNNLASIYKQQGNLDDAIMC 410 (966)
T ss_pred ------------------------------------------------------------hhhHHHHHHhcccHHHHHHH
Confidence 48999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17306 563 ECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 642 (904)
Q Consensus 563 ~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 642 (904)
|+. ++.+.|..++++.++|..|..+|+.+.|+.+|.++|.++|..++++.|||.+|...|+..+|+.
T Consensus 411 Yke-----------alrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~-- 477 (966)
T KOG4626|consen 411 YKE-----------ALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQ-- 477 (966)
T ss_pred HHH-----------HHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHH--
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 643 VTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 643 ~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
.|+.+++++|+.+.++.++..++.-.-++..=-+.+.+..++
T Consensus 478 ---------sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~si 519 (966)
T KOG4626|consen 478 ---------SYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSI 519 (966)
T ss_pred ---------HHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHH
Confidence 888999999999999999999988777666655556666555
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-41 Score=417.71 Aligned_cols=676 Identities=18% Similarity=0.139 Sum_probs=443.0
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGN 84 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 84 (904)
+..+..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.+..++..+|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 201 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD 201 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 45567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHH
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK 164 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 164 (904)
++...|++++|+..|++++..+|.++.++..++.++...|++++|...++++++..|+++..+...|.++...|++++|+
T Consensus 202 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 281 (899)
T TIGR02917 202 LLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDAR 281 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHH-----------HHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHH-HHHHhhcCCCcchHHHhhHHHHHhhcCch
Q psy17306 165 DLYC-----------VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQN-AIVCNYGGRKPTTLESAHFSTLAIKQNPL 232 (904)
Q Consensus 165 ~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 232 (904)
..+. ....+|.++...|++++|+..+.+.+...+..... ..........+...++...+.+++..+|.
T Consensus 282 ~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 361 (899)
T TIGR02917 282 ETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD 361 (899)
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9883 34566888899999999999999876543322211 11222223455667788888899999999
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcc
Q psy17306 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPF 312 (904)
Q Consensus 233 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 312 (904)
++..+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..|+...........+
T Consensus 362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 441 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSY 441 (899)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887632111000000
Q ss_pred cccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccC
Q psy17306 313 VLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPN 392 (904)
Q Consensus 313 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 392 (904)
........+....................++.+....+....++........... .....++.++.++...
T Consensus 442 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---------~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 442 LRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP---------DFFPAAANLARIDIQE 512 (899)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC---------CcHHHHHHHHHHHHHC
Confidence 0000001111111111111111122233333444444444444444433322111 1112233333333222
Q ss_pred CcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCccccccccccccCCCCccccc
Q psy17306 393 GKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIP 471 (904)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 471 (904)
|+ +++|+..|++++.. |....... .++..+...|......
T Consensus 513 g~-----------------------~~~A~~~~~~~~~~~~~~~~~~~----------------~l~~~~~~~~~~~~A~ 553 (899)
T TIGR02917 513 GN-----------------------PDDAIQRFEKVLTIDPKNLRAIL----------------ALAGLYLRTGNEEEAV 553 (899)
T ss_pred CC-----------------------HHHHHHHHHHHHHhCcCcHHHHH----------------HHHHHHHHcCCHHHHH
Confidence 22 55666666666655 44332200 0111221112111111
Q ss_pred CcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHh-------------------------------cc
Q psy17306 472 GKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLD-------------------------------SG 520 (904)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~-------------------------------~~ 520 (904)
..+.... ...|... .....++..+...++..++...+.. +.
T Consensus 554 ~~~~~~~--~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 625 (899)
T TIGR02917 554 AWLEKAA--ELNPQEI------EPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK 625 (899)
T ss_pred HHHHHHH--HhCccch------hHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1111100 0111100 1112233333333333333333222 22
Q ss_pred cccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCC
Q psy17306 521 KSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 600 (904)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 600 (904)
+++...|.++... ..+|.++...|++++|+..|++ ++..+|++..++..++.++...|+
T Consensus 626 ~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~A~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 626 KLLALQPDSALAL----------LLLADAYAVMKNYAKAITSLKR-----------ALELKPDNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred HHHHhCCCChHHH----------HHHHHHHHHcCCHHHHHHHHHH-----------HHhcCCCCHHHHHHHHHHHHHcCC
Confidence 2233334333333 4444555555555555555554 666666666666666666666666
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChh----------------------hHHHhhh
Q psy17306 601 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS----------------------CYLKAIE 658 (904)
Q Consensus 601 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----------------------~~~~~l~ 658 (904)
+++|+..++.+.+..|.++..+..+|.++...|++++|+..|++++...|+ .+.+.++
T Consensus 685 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 685 TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666666667777777777777777777777776665542 3445555
Q ss_pred cCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHH
Q psy17306 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVIL 738 (904)
Q Consensus 659 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 738 (904)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++.++|.++...|+ .+|+.++++++...+++..+...+
T Consensus 765 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~ 843 (899)
T TIGR02917 765 THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTL 843 (899)
T ss_pred hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHH
Confidence 6666677777777777777777777777777777777777777777777777776 667777777777666666666666
Q ss_pred HHHHHHHHHHHHHHHHcCCC
Q psy17306 739 ERCEAKTEELNKKFEQLGES 758 (904)
Q Consensus 739 ~~~~~~~~~~~~~~~~l~~~ 758 (904)
+.+....++++++++.+...
T Consensus 844 ~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 844 GWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666555444
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.7e-40 Score=407.03 Aligned_cols=658 Identities=19% Similarity=0.187 Sum_probs=457.5
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGN 84 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 84 (904)
|....+++.+|..++..|++++|+..|++++..+|.++.++..++.++...|++++|...++++++..|+++.+++..|.
T Consensus 190 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 269 (899)
T TIGR02917 190 PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKAL 269 (899)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 45567888899999999999999999999999999999999999999999999999999999999888888888888888
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHH
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK 164 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 164 (904)
++...|++++|+..|++++..+|+...++..+|.++...|++++|+..+.++++..|++..++..++.++...|++++|.
T Consensus 270 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 349 (899)
T TIGR02917 270 VDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAI 349 (899)
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHH
Confidence 88888899999999988888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHH-----------HHHhhHHHHHHcCCHHHHHHHHhhcCCCcch--hhHHHHHHhh----------------------
Q psy17306 165 DLYC-----------VRSDLGNLLKALGRLDEAKNLHTENIKPVTM--KVQNAIVCNY---------------------- 209 (904)
Q Consensus 165 ~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~---------------------- 209 (904)
..+. .+..++.++...|++++|+..+.+.....+. .....+...+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 429 (899)
T TIGR02917 350 ATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE 429 (899)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc
Confidence 7772 4555677777778888888777775542221 1111111111
Q ss_pred -----------cCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy17306 210 -----------GGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 278 (904)
Q Consensus 210 -----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 278 (904)
........++...+.+.....|.++..+..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 430 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 509 (899)
T TIGR02917 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARID 509 (899)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 111223334455555556666667777777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHh
Q psy17306 279 VAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKI 358 (904)
Q Consensus 279 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (904)
...|++++|+..|++++...|.+..........+........+....................+.......+....++..
T Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 589 (899)
T TIGR02917 510 IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAI 589 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777777777777777765211000000000000000011100000001111111111222222222333333322
Q ss_pred hhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchh
Q psy17306 359 ECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKA 437 (904)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~ 437 (904)
........ +.-...+..+|.++...++ ++.|+..|++++.. |..+..
T Consensus 590 ~~~~~~~~---------~~~~~~~~~l~~~~~~~~~-----------------------~~~A~~~~~~~~~~~~~~~~~ 637 (899)
T TIGR02917 590 LNEAADAA---------PDSPEAWLMLGRAQLAAGD-----------------------LNKAVSSFKKLLALQPDSALA 637 (899)
T ss_pred HHHHHHcC---------CCCHHHHHHHHHHHHHcCC-----------------------HHHHHHHHHHHHHhCCCChHH
Confidence 22211100 0111223333333322222 77788888888776 554433
Q ss_pred hhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHH
Q psy17306 438 DKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLL 517 (904)
Q Consensus 438 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 517 (904)
+ ..++.++...|+...+...+...+ ...|.. ......++.++...++...+...++
T Consensus 638 -----------~-----~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 638 -----------L-----LLLADAYAVMKNYAKAITSLKRAL--ELKPDN------TEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred -----------H-----HHHHHHHHHcCCHHHHHHHHHHHH--hcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 111333333333322222222211 112221 1223345556666665555555443
Q ss_pred hcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHH
Q psy17306 518 DSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE 597 (904)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~ 597 (904)
.+....|.++... ..+|.++...|++++|+..|++ ++...|++ ..+..+|.++..
T Consensus 694 ---~~~~~~~~~~~~~----------~~~~~~~~~~g~~~~A~~~~~~-----------~~~~~~~~-~~~~~l~~~~~~ 748 (899)
T TIGR02917 694 ---SLQKQHPKAALGF----------ELEGDLYLRQKDYPAAIQAYRK-----------ALKRAPSS-QNAIKLHRALLA 748 (899)
T ss_pred ---HHHhhCcCChHHH----------HHHHHHHHHCCCHHHHHHHHHH-----------HHhhCCCc-hHHHHHHHHHHH
Confidence 4444556665554 7788888899999999999988 88888876 678889999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhC
Q psy17306 598 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQ 677 (904)
Q Consensus 598 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~ 677 (904)
.|++++|+..++++++.+|+++.+++.+|.++...|++++|+. .|.++++.+|+++.++.++|+++...
T Consensus 749 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~-----------~~~~~~~~~p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIK-----------HYRTVVKKAPDNAVVLNNLAWLYLEL 817 (899)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999 66677778899999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHHHc
Q psy17306 678 GEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKFEQL 755 (904)
Q Consensus 678 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 755 (904)
|+ .+|+..+++++.+.|+++.++..+|.++...|++++|+++|+++++..+.+..+...++.+..+.++..++.+.+
T Consensus 818 ~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 818 KD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred Cc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99 889999999999999999999999999999999999999999999999999999999999999988888887654
No 5
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4.3e-38 Score=382.71 Aligned_cols=578 Identities=15% Similarity=0.088 Sum_probs=422.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHH-------
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAY------- 79 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------- 79 (904)
-.+.|+.++..+...++.+.|.+.+++++..+|++++++..++.++...|+.++|...++++++.+|+++.++
T Consensus 27 ~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~ 106 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTML 106 (1157)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 4566999999999999999999999999999999999999999999999999999999999999999987753
Q ss_pred ---------HHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHH
Q psy17306 80 ---------SNLGNVYKERGQLQEALENYRHAVRLKPDFIDG-YINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSD 149 (904)
Q Consensus 80 ---------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 149 (904)
..+|.++...|++++|+..|++++..+|.+... ...+..+....|++++|+..++++++.+|+++.++..
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~ 186 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNT 186 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 566788999999999999999999998887642 2233333445699999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhh-------HHHHH----HcCCHHHHHHHHhhcCCCcchhh--H---HH---------
Q psy17306 150 LGNLLKALGRLDEAKDLYCVRSDL-------GNLLK----ALGRLDEAKNLHTENIKPVTMKV--Q---NA--------- 204 (904)
Q Consensus 150 la~~~~~~~~~~~A~~~~~~~~~l-------~~~~~----~~g~~~~A~~~~~~~~~~~~~~~--~---~~--------- 204 (904)
+|.++...|++++|+..++..... +..+. ..+....++..+...+...+... . ..
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 999999999999999999543221 11111 11222233333322111111000 0 00
Q ss_pred -------HHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH--------
Q psy17306 205 -------IVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID-------- 269 (904)
Q Consensus 205 -------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-------- 269 (904)
.............+++..+++++..+|+++.++..+|.++...|++++|+.+|+++++.+|++..
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 00001112334445556666666666666666666666666666666666666666666655432
Q ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhh
Q psy17306 270 ------GYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIE 343 (904)
Q Consensus 270 ------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 343 (904)
....+|.++...|++++|+..|+++++.+|++
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~------------------------------------------ 384 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD------------------------------------------ 384 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------------------------------------
Confidence 11233555566666666666666666666655
Q ss_pred hhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHH
Q psy17306 344 SISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTE 423 (904)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 423 (904)
..++..+|.++...|+ +++|+.
T Consensus 385 -----------------------------------~~a~~~Lg~~~~~~g~-----------------------~~eA~~ 406 (1157)
T PRK11447 385 -----------------------------------SYAVLGLGDVAMARKD-----------------------YAAAER 406 (1157)
T ss_pred -----------------------------------HHHHHHHHHHHHHCCC-----------------------HHHHHH
Confidence 2233344444433333 889999
Q ss_pred HHHHhhcC-CCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHH
Q psy17306 424 DFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNEL 502 (904)
Q Consensus 424 ~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 502 (904)
.|++++.. |+.... ...++.+
T Consensus 407 ~y~~aL~~~p~~~~a----------------------------------------------------------~~~L~~l 428 (1157)
T PRK11447 407 YYQQALRMDPGNTNA----------------------------------------------------------VRGLANL 428 (1157)
T ss_pred HHHHHHHhCCCCHHH----------------------------------------------------------HHHHHHH
Confidence 99999988 665543 1223333
Q ss_pred HHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCC
Q psy17306 503 WKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNP 582 (904)
Q Consensus 503 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p 582 (904)
+.. .+.+++..++..+.... +...... ........+..+|..+...|++++|+..|++ ++..+|
T Consensus 429 ~~~-~~~~~A~~~l~~l~~~~---~~~~~~~-~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~-----------Al~~~P 492 (1157)
T PRK11447 429 YRQ-QSPEKALAFIASLSASQ---RRSIDDI-ERSLQNDRLAQQAEALENQGKWAQAAELQRQ-----------RLALDP 492 (1157)
T ss_pred HHh-cCHHHHHHHHHhCCHHH---HHHHHHH-HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHH-----------HHHhCC
Confidence 322 23444444443322111 1000000 0000123457788999999999999999999 999999
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------
Q psy17306 583 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN------------- 649 (904)
Q Consensus 583 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~------------- 649 (904)
+++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|..+...|++++|+..++++....
T Consensus 493 ~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~ 572 (1157)
T PRK11447 493 GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQ 572 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999887643211
Q ss_pred ----------------hhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcc
Q psy17306 650 ----------------PSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARI 713 (904)
Q Consensus 650 ----------------~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 713 (904)
.+.....+..+|.++.++..+|.++...|++++|+..|+++++.+|+++.++.++|.+|...|+
T Consensus 573 ~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 573 SDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD 652 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 0112334557899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy17306 714 FDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKFEQLGES 758 (904)
Q Consensus 714 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 758 (904)
+++|+++|++++...+++......++.+....+++.++.+.+...
T Consensus 653 ~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 653 LAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999998888888888999998888888887766544
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.2e-35 Score=361.42 Aligned_cols=565 Identities=14% Similarity=0.046 Sum_probs=413.0
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----------------HHHHHHHHhhcCHHHHHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVL----------------LLLSSIHFQCRKLDKSAHFSTLA 68 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~----------------~~la~~~~~~g~~~~A~~~~~~a 68 (904)
|....++...+..+...|++++|...++++++.+|+++.+. +.+|.++...|++++|+..|+++
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44567789999999999999999999999999999987764 56678899999999999999999
Q ss_pred HhcCcccHH-HHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhH-
Q psy17306 69 IKQNPLLAE-AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCV- 146 (904)
Q Consensus 69 l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~- 146 (904)
+..+|.+.. +......+....|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...+....+
T Consensus 139 l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa 218 (1157)
T PRK11447 139 FNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAA 218 (1157)
T ss_pred ccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHH
Confidence 999888754 222333344456999999999999999999999999999999999999999999999998765433211
Q ss_pred --HHHH--------------HHHHHHc---CChHHHHHHHH-----------HHHhhHHHHHHcCCHHHHHHHHhhcCCC
Q psy17306 147 --RSDL--------------GNLLKAL---GRLDEAKDLYC-----------VRSDLGNLLKALGRLDEAKNLHTENIKP 196 (904)
Q Consensus 147 --~~~l--------------a~~~~~~---~~~~~A~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 196 (904)
+... ....... .....|...+. ....+|..+...|++++|+..+++++..
T Consensus 219 ~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~ 298 (1157)
T PRK11447 219 QLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA 298 (1157)
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1100 0000000 11222323221 1123477888899999999999887764
Q ss_pred cc--hhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHH--------------HHHHHHHHHHHhCCHHHHHHHHHHH
Q psy17306 197 VT--MKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAE--------------AYSNLGNVYKERGQLQEALENYRHA 260 (904)
Q Consensus 197 ~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~lg~~~~~~g~~~~A~~~~~~a 260 (904)
.+ ......+.. ......+..++...+++++..+|++.. ....+|.++...|++++|+..|+++
T Consensus 299 ~P~~~~a~~~Lg~-~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A 377 (1157)
T PRK11447 299 NPKDSEALGALGQ-AYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA 377 (1157)
T ss_pred CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 43 222223322 223446677888888899998886542 2235588899999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhh
Q psy17306 261 VRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLAS 340 (904)
Q Consensus 261 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 340 (904)
+..+|+++.++..+|.++...|++++|+..|+++++.+|++.
T Consensus 378 l~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~-------------------------------------- 419 (1157)
T PRK11447 378 RQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT-------------------------------------- 419 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--------------------------------------
Confidence 999999999999999999999999999999999999999881
Q ss_pred hhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhh
Q psy17306 341 AIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDF 420 (904)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (904)
..+..++.++.. ...++
T Consensus 420 ---------------------------------------~a~~~L~~l~~~------------------------~~~~~ 436 (1157)
T PRK11447 420 ---------------------------------------NAVRGLANLYRQ------------------------QSPEK 436 (1157)
T ss_pred ---------------------------------------HHHHHHHHHHHh------------------------cCHHH
Confidence 011111111100 00344
Q ss_pred hHHHHHHhhcC-CCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHH
Q psy17306 421 DTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYL 499 (904)
Q Consensus 421 A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 499 (904)
|+..++.+... +..... .........+..+
T Consensus 437 A~~~l~~l~~~~~~~~~~-------------------------------------------------~~~~l~~~~~~~~ 467 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDD-------------------------------------------------IERSLQNDRLAQQ 467 (1157)
T ss_pred HHHHHHhCCHHHHHHHHH-------------------------------------------------HHHHhhhhHHHHH
Confidence 44444432211 000000 0000000112234
Q ss_pred HHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHH
Q psy17306 500 NELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIK 579 (904)
Q Consensus 500 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~ 579 (904)
+..+...++...+ +..+.++++.+|+++.+. ..+|.++...|++++|+..+++ ++.
T Consensus 468 a~~~~~~g~~~eA---~~~~~~Al~~~P~~~~~~----------~~LA~~~~~~G~~~~A~~~l~~-----------al~ 523 (1157)
T PRK11447 468 AEALENQGKWAQA---AELQRQRLALDPGSVWLT----------YRLAQDLRQAGQRSQADALMRR-----------LAQ 523 (1157)
T ss_pred HHHHHHCCCHHHH---HHHHHHHHHhCCCCHHHH----------HHHHHHHHHcCCHHHHHHHHHH-----------HHH
Confidence 4445555544444 444566777888887766 8888888899999999999988 788
Q ss_pred hCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------------------------------HhhCCCcH
Q psy17306 580 QNPLLAEAYSNLGNVYKERGQLQEALENYRHA----------------------------------------VRLKPDFI 619 (904)
Q Consensus 580 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a----------------------------------------l~~~p~~~ 619 (904)
.+|+++.+++.+|..+...+++++|+..++++ ++.+|.++
T Consensus 524 ~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~ 603 (1157)
T PRK11447 524 QKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPST 603 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCc
Confidence 88888887777777777777777776665542 23478888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH
Q psy17306 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699 (904)
Q Consensus 620 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 699 (904)
.++..+|.++...|++++|+. .|.++++.+|+++.++..+|.++...|++++|++.|+++++..|+++.
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~-----------~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~ 672 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARA-----------AYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLN 672 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChH
Confidence 899999999999999999999 777777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhcccCChh------hHHHHHHHHHHHHHHHHHHHHHc
Q psy17306 700 AYINLGNVLKEARIFDRANTLFYVSSYFMITDE------DIDVILERCEAKTEELNKKFEQL 755 (904)
Q Consensus 700 a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~l 755 (904)
++..+|.++...|++++|+++|++++...+++. .+...++......++..+++..+
T Consensus 673 ~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 673 TQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999998765432 23333455565555555555444
No 7
>KOG2002|consensus
Probab=100.00 E-value=6.9e-37 Score=326.25 Aligned_cols=579 Identities=17% Similarity=0.197 Sum_probs=378.2
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCH--HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHH
Q psy17306 24 YESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKL--DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRH 101 (904)
Q Consensus 24 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 101 (904)
+..|..+|..+-.++-.....+...+..+...|+. +.|...|..+++.+|+|..+++..|.+.+..|+|..|+.+|++
T Consensus 110 ~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~ 189 (1018)
T KOG2002|consen 110 FDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKK 189 (1018)
T ss_pred HHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHH
Confidence 44444455544444433333333333333333332 4555555555555555555555555555555555555555555
Q ss_pred HHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCC---hHHHHHHH----------
Q psy17306 102 AVRLKPDF-IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGR---LDEAKDLY---------- 167 (904)
Q Consensus 102 al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~---------- 167 (904)
++.++|.. ++..+.+|.|++++|+.+.|+..|+++++++|.++.++..||.+-....+ +..++..+
T Consensus 190 al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~n 269 (1018)
T KOG2002|consen 190 ALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNEN 269 (1018)
T ss_pred HHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCC
Confidence 55555443 33444555555555555555555555555555555555555544443332 22233322
Q ss_pred -HHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHH
Q psy17306 168 -CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE 246 (904)
Q Consensus 168 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~ 246 (904)
.+...++..++..|+|..+..+...++. .....+..++.++++|++|..
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~------------------------------~t~~~~~~aes~Y~~gRs~Ha 319 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIK------------------------------NTENKSIKAESFYQLGRSYHA 319 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHH------------------------------hhhhhHHHHHHHHHHHHHHHh
Confidence 2344445555555555555555442211 112233446778888888888
Q ss_pred hCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHh
Q psy17306 247 RGQLQEALENYRHAVRLKPDF-IDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRR 325 (904)
Q Consensus 247 ~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~ 325 (904)
+|+|++|..+|.+++..+|++ .-.++++|+.++..|+++.|+.+|+++++..|++++ .
T Consensus 320 ~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e-----------------t---- 378 (1018)
T KOG2002|consen 320 QGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE-----------------T---- 378 (1018)
T ss_pred hccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH-----------------H----
Confidence 888888888888888888887 677888888888888888888888888888888832 0
Q ss_pred hhhhcccccccchhhhhhhhhhhh----hhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccc
Q psy17306 326 GALVMMKRPVLGLASAIESISANQ----EKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIY 401 (904)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 401 (904)
...++.++... ...+.+..+...... ..+...+++..+++++....
T Consensus 379 -------------m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~---------~~~~d~~a~l~laql~e~~d-------- 428 (1018)
T KOG2002|consen 379 -------------MKILGCLYAHSAKKQEKRDKASNVLGKVLE---------QTPVDSEAWLELAQLLEQTD-------- 428 (1018)
T ss_pred -------------HHHHHhHHHhhhhhhHHHHHHHHHHHHHHh---------cccccHHHHHHHHHHHHhcC--------
Confidence 01111111111 111111111111110 11223444445555443221
Q ss_pred cccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchh
Q psy17306 402 KDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSI 480 (904)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (904)
.-.++..|..++.. -.
T Consensus 429 ----------------~~~sL~~~~~A~d~L~~----------------------------------------------- 445 (1018)
T KOG2002|consen 429 ----------------PWASLDAYGNALDILES----------------------------------------------- 445 (1018)
T ss_pred ----------------hHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 11123444444322 00
Q ss_pred cccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccc--cCCCC---cchHHHHHHHHHHHhhCchhHhhcCC
Q psy17306 481 RIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWR--TNPEH---PNYVAAARATKYVYNVEPDLTREGGS 555 (904)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~ 555 (904)
........++..++.+....+..+.+...+..+...+. .+++. +.+ ..-+++|.+....++
T Consensus 446 ------~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~l--------t~~YNlarl~E~l~~ 511 (1018)
T KOG2002|consen 446 ------KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNL--------TLKYNLARLLEELHD 511 (1018)
T ss_pred ------cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchh--------HHHHHHHHHHHhhhh
Confidence 00012234567888888888998888888877766533 23332 221 234899999999999
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH
Q psy17306 556 IPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635 (904)
Q Consensus 556 ~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 635 (904)
++.|.+.|.. .+..+|....++..+|......++..+|...++.++..+..++.++..+|.+++...++
T Consensus 512 ~~~A~e~Yk~-----------Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 512 TEVAEEMYKS-----------ILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred hhHHHHHHHH-----------HHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhh
Confidence 9999999999 99999999999999998888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhC------------CCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy17306 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQ------------GEIWLAIHHFEKAVSLDPNFLDAYIN 703 (904)
Q Consensus 636 ~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~------------g~~~~A~~~~~~al~~~p~~~~a~~~ 703 (904)
..|.+-|+.+++.. . .-+++.++..||+++... +.+++|++.|.++|..+|.|..+-.+
T Consensus 581 ~~a~k~f~~i~~~~-------~--~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANG 651 (1018)
T KOG2002|consen 581 KPAKKKFETILKKT-------S--TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANG 651 (1018)
T ss_pred cccccHHHHHHhhh-------c--cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccc
Confidence 99999666555421 1 115778899999988753 56899999999999999999999999
Q ss_pred HHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccCCCcccccccCchhhh
Q psy17306 704 LGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKFEQLGESSLRDFTLDAPTQSVYKFEGEDYRE 782 (904)
Q Consensus 704 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~g~~~~~ 782 (904)
+|.|+...|++.+|+.+|.++.+...+..++..++++|+...+++..+++.+... ++.|. ..++..|..++|+.+..
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~-lkkf~-~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENC-LKKFY-KKNRSEVLHYLARAWYE 728 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHH-HHHhc-ccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998888999999999999999999999988766 55554 35566799999855544
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=2e-34 Score=329.56 Aligned_cols=435 Identities=18% Similarity=0.190 Sum_probs=346.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
.+..+..+|..++..|+|++|+..|++++...|+ +..+..+|.||...|++++|+..++++++++|++..+++.+|.+|
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4667889999999999999999999999999996 778999999999999999999999999999999999999999999
Q ss_pred HHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHH
Q psy17306 87 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDL 166 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 166 (904)
..+|++++|+..|..+...++........+..... ...+......+++..|.+...+..++..+... ....+...
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 279 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL----KKFAESKAKEILETKPENLPSVTFVGNYLQSF-RPKPRPAG 279 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH----HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-cCCcchhh
Confidence 99999999999999888776654432222211111 13556667777788888777777676655322 11111111
Q ss_pred H-----------HHHHhhHHHH---HHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhc---
Q psy17306 167 Y-----------CVRSDLGNLL---KALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ--- 229 (904)
Q Consensus 167 ~-----------~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--- 229 (904)
+ .....++... ...+.+++|+..|+ +++..
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~---------------------------------~al~~~~~ 326 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFE---------------------------------KALDLGKL 326 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHH---------------------------------HHHhcCCC
Confidence 1 0111111111 22355666666665 55543
Q ss_pred CchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCC
Q psy17306 230 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNT 309 (904)
Q Consensus 230 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 309 (904)
.|....++..+|.++...|++++|+..|++++.++|.+..++..+|.++...|++++|+..|+++++.+|+++
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~------- 399 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP------- 399 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-------
Confidence 5777888999999999999999999999999999999999999999999999999999999999998888761
Q ss_pred CcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhccc
Q psy17306 310 EPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLV 389 (904)
Q Consensus 310 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 389 (904)
T Consensus 400 -------------------------------------------------------------------------------- 399 (615)
T TIGR00990 400 -------------------------------------------------------------------------------- 399 (615)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCccc
Q psy17306 390 EPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTV 469 (904)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 469 (904)
T Consensus 400 -------------------------------------------------------------------------------- 399 (615)
T TIGR00990 400 -------------------------------------------------------------------------------- 399 (615)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchh
Q psy17306 470 IPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDL 549 (904)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 549 (904)
.++..+|.+
T Consensus 400 -----------------------------------------------------------------------~~~~~lg~~ 408 (615)
T TIGR00990 400 -----------------------------------------------------------------------DIYYHRAQL 408 (615)
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 123677888
Q ss_pred HhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy17306 550 TREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 629 (904)
Q Consensus 550 ~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 629 (904)
+...|++++|+..|++ ++..+|++..++..+|.++...|++++|+..|+++++..|+++.++..+|.++
T Consensus 409 ~~~~g~~~~A~~~~~k-----------al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~ 477 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQK-----------SIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELL 477 (615)
T ss_pred HHHcCCHHHHHHHHHH-----------HHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 8899999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHH-HHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy17306 630 VAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLG-CVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708 (904)
Q Consensus 630 ~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 708 (904)
..+|++++|+..|++++.+.|+.- ....+ ...+.+.+ .++...|++++|+..|++++.++|++..++..+|.++
T Consensus 478 ~~~g~~~~A~~~~~~Al~l~p~~~----~~~~~-~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~ 552 (615)
T TIGR00990 478 LDQNKFDEAIEKFDTAIELEKETK----PMYMN-VLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLL 552 (615)
T ss_pred HHccCHHHHHHHHHHHHhcCCccc----ccccc-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 999999999996666665544310 00011 11223333 3444579999999999999999999999999999999
Q ss_pred HHhcchhHHHHHHHHhhcccCChhhH
Q psy17306 709 KEARIFDRANTLFYVSSYFMITDEDI 734 (904)
Q Consensus 709 ~~~g~~~~A~~~~~~a~~~~~~~~~~ 734 (904)
..+|++++|+.+|++++++..+..+.
T Consensus 553 ~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 553 LQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred HHccCHHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999988765553
No 9
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=2.5e-33 Score=323.36 Aligned_cols=598 Identities=14% Similarity=0.047 Sum_probs=411.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
....+|..|..+...|++++|+..|+++++.+|+++.+++.++.+|+..|++++|+..++++++.+|.+...+..++.+
T Consensus 43 ~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i- 121 (987)
T PRK09782 43 VIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI- 121 (987)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh-
Confidence 3566888999999999999999999999999999999999999999999999999999999999999999988888777
Q ss_pred HHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH----------------------------------------HHHcCCH
Q psy17306 87 KERGQLQEALENYRHAVRLKPDFIDGYINLAAA----------------------------------------LVAAGDM 126 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~----------------------------------------~~~~g~~ 126 (904)
+++++|+..|++++..+|++.+++..++.. |..+|+|
T Consensus 122 ---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 122 ---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred ---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 999999999999999999987776665554 3344555
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHH-cCChHHHHHHH--------HHHHhhHHHHHHcCCHHHHHHHHhhcCCCc
Q psy17306 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLKA-LGRLDEAKDLY--------CVRSDLGNLLKALGRLDEAKNLHTENIKPV 197 (904)
Q Consensus 127 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 197 (904)
++|+..+.++++..|.+......++.+|.. +++ +++..++ ..+..++..+...|+.++|...+++.-...
T Consensus 199 ~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 199 SQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 555555555555555555555555555554 244 4444443 133345566666677777766666532211
Q ss_pred ch----hhHHHHHHhhcCC-----CcchHH--------H------------hhHHHHHhhcCchhHHHHHHHHHHHHHhC
Q psy17306 198 TM----KVQNAIVCNYGGR-----KPTTLE--------S------------AHFSTLAIKQNPLLAEAYSNLGNVYKERG 248 (904)
Q Consensus 198 ~~----~~~~~~~~~~~~~-----~~~~~~--------a------------~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 248 (904)
.. ......+...... ...... . ....++.....|.++. ....-......+
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~ 356 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEM-LEERYAVSVATR 356 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchH-HHHHHhhccccC
Confidence 11 1111111111111 000000 0 0011223334444432 111122223446
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHH-Hhhh
Q psy17306 249 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALW-RRGA 327 (904)
Q Consensus 249 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~-~~~~ 327 (904)
.+.+|........+..|.+..++..++......|++++|...++.+....++. . + ...+. +.+.
T Consensus 357 ~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~--------~----~~~l~~~l~~ 421 (987)
T PRK09782 357 NKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDA---R--------L----SQTLMARLAS 421 (987)
T ss_pred chhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccc---c--------c----CHHHHHHHHH
Confidence 77777777777777779999999999999999999999999999998763322 0 0 00000 1111
Q ss_pred hhcccccccchhhh---------------hhhhhhhhhhhhHHHHhhhccccccccCCCcchhhH--HHHHHHHhhcccc
Q psy17306 328 LVMMKRPVLGLASA---------------IESISANQEKCAVNIKIECASKDLHSGLFGGSVHEA--MTDLIYIMGQLVE 390 (904)
Q Consensus 328 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lg~~~~ 390 (904)
+............+ .+........+........ ..+. ...+++.+|.++.
T Consensus 422 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~-------------~~p~~~~~~a~~~LG~~l~ 488 (987)
T PRK09782 422 LLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLG-------------DMSPSYDAAAWNRLAKCYR 488 (987)
T ss_pred HHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcc-------------cCCCCCCHHHHHHHHHHHH
Confidence 11111110000000 0000000111111111110 0011 3445555555443
Q ss_pred cCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCccccccccccccCCCCccc
Q psy17306 391 PNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTV 469 (904)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 469 (904)
. + +.++|+..|.+++.. |+...
T Consensus 489 ~-~-----------------------~~~eAi~a~~~Al~~~Pd~~~--------------------------------- 511 (987)
T PRK09782 489 D-T-----------------------LPGVALYAWLQAEQRQPDAWQ--------------------------------- 511 (987)
T ss_pred h-C-----------------------CcHHHHHHHHHHHHhCCchHH---------------------------------
Confidence 2 1 156788888887776 43210
Q ss_pred ccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchh
Q psy17306 470 IPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDL 549 (904)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 549 (904)
...++......++.+.+..++. ++....|.+ ..+ ..+|.+
T Consensus 512 --------------------------~L~lA~al~~~Gr~eeAi~~~r---ka~~~~p~~-~a~----------~~la~a 551 (987)
T PRK09782 512 --------------------------HRAVAYQAYQVEDYATALAAWQ---KISLHDMSN-EDL----------LAAANT 551 (987)
T ss_pred --------------------------HHHHHHHHHHCCCHHHHHHHHH---HHhccCCCc-HHH----------HHHHHH
Confidence 1123333445566666665554 344444443 233 677889
Q ss_pred HhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy17306 550 TREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 629 (904)
Q Consensus 550 ~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 629 (904)
+...|++++|+.++++ ++..+|.....+..++......|++++|+..|+++++++|+ +.++.++|.++
T Consensus 552 ll~~Gd~~eA~~~l~q-----------AL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l 619 (987)
T PRK09782 552 AQAAGNGAARDRWLQQ-----------AEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIY 619 (987)
T ss_pred HHHCCCHHHHHHHHHH-----------HHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 9999999999999999 99999998888888888778889999999999999999997 89999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy17306 630 VAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLK 709 (904)
Q Consensus 630 ~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 709 (904)
.+.|++++|+. .+.+++..+|+++.++.++|.++...|++++|+..|+++++++|+++.+++++|.++.
T Consensus 620 ~~lG~~deA~~-----------~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 620 RQRHNVPAAVS-----------DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHCCCHHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999 7778888999999999999999999999999999999999999999999999999999
Q ss_pred HhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy17306 710 EARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKFEQLGES 758 (904)
Q Consensus 710 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 758 (904)
.+|++++|+.+|++++...|+...+....+....+-..+..+++.+...
T Consensus 689 ~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 689 RLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988888888888788777765443
No 10
>KOG2002|consensus
Probab=100.00 E-value=8.4e-35 Score=310.44 Aligned_cols=594 Identities=18% Similarity=0.181 Sum_probs=409.0
Q ss_pred HHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc-HHHHHHHHHHHH
Q psy17306 11 LLELAHREYQAGDY--ESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL-AEAYSNLGNVYK 87 (904)
Q Consensus 11 l~~~a~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~ 87 (904)
++..+..++..|+. +.|...|..+++..|++..+++..|.+.+..|+|..|+.+|.+++.++|.. +.....+|.|+.
T Consensus 131 l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~ 210 (1018)
T KOG2002|consen 131 LLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFW 210 (1018)
T ss_pred hhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHH
Confidence 44555556666655 888889999999999999899999999999999999999999998888863 556778888999
Q ss_pred HhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHH
Q psy17306 88 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG---DMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK 164 (904)
Q Consensus 88 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 164 (904)
++|+.+.|+..|+++++++|.++.++..||.+-.... .+..++..+.++...+|.+|.++..|+..++..|++..+.
T Consensus 211 kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~ 290 (1018)
T KOG2002|consen 211 KLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVW 290 (1018)
T ss_pred hccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHH
Confidence 9999999999999999999988888888888876654 4677888888999999999999999999999999998887
Q ss_pred HHH--------------HHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHH-H-HHhhcCCCcchHHHhhHHHHHhh
Q psy17306 165 DLY--------------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNA-I-VCNYGGRKPTTLESAHFSTLAIK 228 (904)
Q Consensus 165 ~~~--------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~a~~~~~~~~~ 228 (904)
.+. +.++.+|..+..+|++++|..+|.+++...+...... . +....-...+...+..++++++.
T Consensus 291 ~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k 370 (1018)
T KOG2002|consen 291 HLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK 370 (1018)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH
Confidence 776 3577888999999999999998875554333221100 0 01111122333444444555555
Q ss_pred cCchhHHHHHHHHHHHHHhC----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccc
Q psy17306 229 QNPLLAEAYSNLGNVYKERG----QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKE 304 (904)
Q Consensus 229 ~~~~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 304 (904)
..|++.+....+|.+|...+ ..+.|..+..++++..|.+..+|..++.++....-+. ++.+|.+++..-...
T Consensus 371 ~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~--- 446 (1018)
T KOG2002|consen 371 QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESK--- 446 (1018)
T ss_pred hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHc---
Confidence 55555555555555555443 3445555555555555555555555555554333222 255555554322111
Q ss_pred cCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchh-hHHHHHHH
Q psy17306 305 DGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVH-EAMTDLIY 383 (904)
Q Consensus 305 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 383 (904)
....-....++++.+....+.+..+...+..+..........+.. .......|
T Consensus 447 --------------------------~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 447 --------------------------GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred --------------------------CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 011122333444444444444444444333332221100000000 00123345
Q ss_pred HhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCcccccccccccc
Q psy17306 384 IMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFS 462 (904)
Q Consensus 384 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 462 (904)
+++.+....+. .+.|.+.|..++.. |..... |.
T Consensus 501 Nlarl~E~l~~-----------------------~~~A~e~Yk~Ilkehp~YId~-----------yl------------ 534 (1018)
T KOG2002|consen 501 NLARLLEELHD-----------------------TEVAEEMYKSILKEHPGYIDA-----------YL------------ 534 (1018)
T ss_pred HHHHHHHhhhh-----------------------hhHHHHHHHHHHHHCchhHHH-----------HH------------
Confidence 55554433222 67888999999887 776655 11
Q ss_pred CCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHH
Q psy17306 463 GPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYV 542 (904)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (904)
.++.+.. +.....++...+..++..+..+|.++
T Consensus 535 -----------------------------------Rl~~ma~---~k~~~~ea~~~lk~~l~~d~~np~ar--------- 567 (1018)
T KOG2002|consen 535 -----------------------------------RLGCMAR---DKNNLYEASLLLKDALNIDSSNPNAR--------- 567 (1018)
T ss_pred -----------------------------------HhhHHHH---hccCcHHHHHHHHHHHhcccCCcHHH---------
Confidence 1111111 22223344444566777778888877
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHH------------cCCHHHHHHHHHH
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE------------RGQLQEALENYRH 610 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~------------~g~~~~A~~~~~~ 610 (904)
..+|..+.....+..|-.-|...++. .... .++.+...||+++.. .+.+++|+++|.+
T Consensus 568 -sl~G~~~l~k~~~~~a~k~f~~i~~~--------~~~~-~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~k 637 (1018)
T KOG2002|consen 568 -SLLGNLHLKKSEWKPAKKKFETILKK--------TSTK-TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGK 637 (1018)
T ss_pred -HHHHHHHHhhhhhcccccHHHHHHhh--------hccC-CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 88999999999999999887772221 1111 467788889998743 4468899999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy17306 611 AVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKA 690 (904)
Q Consensus 611 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 690 (904)
+|+.+|.+..+-+.+|.++...|++.+|.. .|.++.+.-.+.+.+|.|+|.||..+|+|..|++.|+.+
T Consensus 638 vL~~dpkN~yAANGIgiVLA~kg~~~~A~d-----------IFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 638 VLRNDPKNMYAANGIGIVLAEKGRFSEARD-----------IFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred HHhcCcchhhhccchhhhhhhccCchHHHH-----------HHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 555554544567789999999999999999999999999
Q ss_pred HhcC--cCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHH
Q psy17306 691 VSLD--PNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEEL 748 (904)
Q Consensus 691 l~~~--p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 748 (904)
++.. .+++.++..||.++...|.+.+|.+...+++...|.+..+.++++....++...
T Consensus 707 lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s 766 (1018)
T KOG2002|consen 707 LKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAES 766 (1018)
T ss_pred HHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHH
Confidence 9983 457999999999999999999999999999999999999999988887766443
No 11
>PF09110 HAND: HAND; InterPro: IPR015194 Nucleosome remodelling is an energy-dependent process that alters histone-DNA interactions within nucleosomes, thereby rendering nucleosomal DNA accessible to regulatory factors. The ATPases involved belong to the SWI2/SNF2 subfamily of DEAD/H-helicases, which contain a conserved ATPase domain characterised by seven motifs. Proteins within this family differ with regard to domain organisation, their associated proteins and the remodelling complex in which they reside. The ATPase ISWI is a member of this family. ISWI can be divided into two regions: an N-terminal region that contains the SWI2/SNF2 ATPase domain, and a C-terminal region that is responsible for substrate recognition. The C-terminal region contains 12 alpha-helices and can be divided into three domains and a spacer region: a HAND domain (named because its 4-helical structure resembles an open hand), a SANT domain (c-Myb DNA-binding like), a spacer helix, and a SLIDE domain (SANT-like but with several insertions). This entry represents the HAND domain, which adopts a secondary structure consisting of four alpha helices, three of which (H2, H3, H4) form an L-like configuration. Helix H2 runs antiparallel to helices H3 and H4, packing closely against helix H4, whilst helix H1 reposes in the concave surface formed by these three helices and runs perpendicular to them. This domain confers DNA and nucleosome binding properties to the protein []. ; GO: 0031491 nucleosome binding, 0043044 ATP-dependent chromatin remodeling, 0016585 chromatin remodeling complex; PDB: 1OFC_X 2Y9Y_A 2Y9Z_A 2NOG_A.
Probab=100.00 E-value=2.1e-37 Score=250.52 Aligned_cols=99 Identities=57% Similarity=0.946 Sum_probs=69.9
Q ss_pred chhHHHHHHHhcCCCCC-----CCCCCCCCCCCccccccCCchhHhHHHHHHHHHHhhcCccCCCCCCCC--------cc
Q psy17306 805 AVDAYFKEALRTSEPKA-----PKAPRPPKQPIVQDFQFFPPRLFEILDQEIYYFRKTVGYKVPKNPELG--------SD 871 (904)
Q Consensus 805 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 871 (904)
|||+||++||+++.++. |++|||||++||+|||||||||+||+|||++||+|+||||||+.+..+ .+
T Consensus 1 SVD~YYkdvl~~g~~~~~~~~~pk~Pr~PK~~~~~DfQFfPprL~eL~EkE~~~y~K~i~yk~~~~d~~~~~~~~~~~~~ 80 (113)
T PF09110_consen 1 SVDNYYKDVLRTGGKKPKKQNQPKAPRPPKQPNIQDFQFFPPRLKELQEKEQLYYKKKIGYKVPLDDGKDSYEEEEDEEE 80 (113)
T ss_dssp -HHHHHHHH------SS-------S---TTS--GGGGGS--HHHHHHHHHHHHHHHHHCT----CCCHTTTS--SSSTTC
T ss_pred ChHHHHHHHHccCCCCCccccCCCCCCCCCCCCCCccccCChHHHHHHHHHHHHHHHHhCCCCCcccccccccccccccc
Confidence 79999999999866643 999999999999999999999999999999999999999999997432 44
Q ss_pred hHHHHHHHHhhhhccCCCCHHHHHHHHHHhhc
Q psy17306 872 ATKAQKEEQKKIDESEPLTEEELAEKEELLTQ 903 (904)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (904)
...++++||++||||+||||||+++|++|++|
T Consensus 81 ~e~~~~~eq~~Idna~pLTEEE~~~Ke~Ll~e 112 (113)
T PF09110_consen 81 REAKRKLEQEKIDNAEPLTEEEEAEKEKLLSE 112 (113)
T ss_dssp HHHHHHHHHHHHHT-SSS-HHHHHHHHHHTTS
T ss_pred HHHHHHHHHhccccCCCCCHHHHHHHHHHHhc
Confidence 55688999999999999999999999999986
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=4.7e-32 Score=312.92 Aligned_cols=506 Identities=15% Similarity=0.024 Sum_probs=348.4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHH--
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNL-- 82 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-- 82 (904)
|....+++.++..+...|++++|+..++++++.+|.+...+..++.+ +++++|+..|+++++.+|++..++..+
T Consensus 75 P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~ 150 (987)
T PRK09782 75 PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCR 150 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHH
Confidence 45577789999999999999999999999999999998888888777 899999999999999988865544333
Q ss_pred --------------------------------------HHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-c
Q psy17306 83 --------------------------------------GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA-A 123 (904)
Q Consensus 83 --------------------------------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~ 123 (904)
+.+|..+|+|++|+..+.++++.+|.+...+..++.+|.. +
T Consensus 151 ~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l 230 (987)
T PRK09782 151 SEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQ 230 (987)
T ss_pred HhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Confidence 4556778999999999999999999999999999999998 5
Q ss_pred CCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH------------------------------------
Q psy17306 124 GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY------------------------------------ 167 (904)
Q Consensus 124 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~------------------------------------ 167 (904)
++ ++++.+++..++ +++.++..++..|...|+.++|...+
T Consensus 231 ~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~ 306 (987)
T PRK09782 231 LD-DRLLALQSQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTV 306 (987)
T ss_pred CH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhh
Confidence 77 888888765333 67889999999999999999999888
Q ss_pred ----------------------------------------------------------------------HHHHhhHHHH
Q psy17306 168 ----------------------------------------------------------------------CVRSDLGNLL 177 (904)
Q Consensus 168 ----------------------------------------------------------------------~~~~~l~~~~ 177 (904)
+....++...
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~ 386 (987)
T PRK09782 307 QFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQL 386 (987)
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 0111223333
Q ss_pred HHcCCHHHHHHHHhhcCCC-cchh----hHHHHHHhhcCCCcchHHHhhHHHHHhhcCch--hHHHHHHHH------HHH
Q psy17306 178 KALGRLDEAKNLHTENIKP-VTMK----VQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL--LAEAYSNLG------NVY 244 (904)
Q Consensus 178 ~~~g~~~~A~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~lg------~~~ 244 (904)
...|++++|..++...... .... ....+...+. .+|. .+.-...+| .-.
T Consensus 387 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------------------~~~~~~~~~~~~~l~~~~~~~~~~ 448 (987)
T PRK09782 387 MQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE------------------SHPYLATPAKVAILSKPLPLAEQR 448 (987)
T ss_pred HHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH------------------hCCcccchHHHHHhccccccchhH
Confidence 4445555555555554431 1000 0000000000 0000 000000000 000
Q ss_pred HHhCCHHH---HHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHH
Q psy17306 245 KERGQLQE---ALENYRHAVRLKPD--FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERR 319 (904)
Q Consensus 245 ~~~g~~~~---A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 319 (904)
.-.|+..+ +...+.+++...|. ++.+++.+|.++.. +++.+|+..+.+++...|+..
T Consensus 449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~----------------- 510 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW----------------- 510 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-----------------
Confidence 11333322 22333333333344 44555555555544 444445555555554444330
Q ss_pred HHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccc
Q psy17306 320 KALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPH 399 (904)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~ 399 (904)
....++..+...|+
T Consensus 511 ------------------------------------------------------~~L~lA~al~~~Gr------------ 524 (987)
T PRK09782 511 ------------------------------------------------------QHRAVAYQAYQVED------------ 524 (987)
T ss_pred ------------------------------------------------------HHHHHHHHHHHCCC------------
Confidence 00011111112222
Q ss_pred cccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccch
Q psy17306 400 IYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFS 479 (904)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (904)
+++|+..|++++..|.....
T Consensus 525 ------------------~eeAi~~~rka~~~~p~~~a------------------------------------------ 544 (987)
T PRK09782 525 ------------------YATALAAWQKISLHDMSNED------------------------------------------ 544 (987)
T ss_pred ------------------HHHHHHHHHHHhccCCCcHH------------------------------------------
Confidence 44444444444433111110
Q ss_pred hcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHH
Q psy17306 480 IRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPIT 559 (904)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 559 (904)
...++.+....++...+..++. +++...|.+.... ..++......|++++|
T Consensus 545 ----------------~~~la~all~~Gd~~eA~~~l~---qAL~l~P~~~~l~----------~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 545 ----------------LLAAANTAQAAGNGAARDRWLQ---QAEQRGLGDNALY----------WWLHAQRYIPGQPELA 595 (987)
T ss_pred ----------------HHHHHHHHHHCCCHHHHHHHHH---HHHhcCCccHHHH----------HHHHHHHHhCCCHHHH
Confidence 0122233333334433333333 2233445443333 3445555567999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy17306 560 LTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 639 (904)
Q Consensus 560 ~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 639 (904)
+..|++ ++..+|+ +.++.++|.++...|++++|+..|++++.++|+++.++.++|.++...|++++|+
T Consensus 596 l~~~~~-----------AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 596 LNDLTR-----------SLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred HHHHHH-----------HHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999 9999997 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHH
Q psy17306 640 QAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANT 719 (904)
Q Consensus 640 ~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 719 (904)
. .+.++++.+|+++.+++++|.++..+|++++|+.+|+++++++|+++.+....|.+.....+++.|.+
T Consensus 664 ~-----------~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 664 E-----------MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred H-----------HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 9 77788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCChh
Q psy17306 720 LFYVSSYFMITDE 732 (904)
Q Consensus 720 ~~~~a~~~~~~~~ 732 (904)
.+++.....++.-
T Consensus 733 ~~~r~~~~~~~~~ 745 (987)
T PRK09782 733 EVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHhhcCccch
Confidence 9999998887543
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=2.6e-32 Score=312.15 Aligned_cols=429 Identities=15% Similarity=0.127 Sum_probs=331.6
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 121 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 121 (904)
+..+..+|..++..|+|++|+..|++++...|+ +..+.++|.||..+|++++|+..++++++++|++..++..+|.++.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345778899999999999999999999999996 7789999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhh
Q psy17306 122 AAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKV 201 (904)
Q Consensus 122 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 201 (904)
.+|++++|+..|..+...++.+......+...+........+.. .+...........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~-----------------------~l~~~~~~~~~~~ 262 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKE-----------------------ILETKPENLPSVT 262 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHH-----------------------HHhcCCCCCCCHH
Confidence 99999999999988877765443221111111111000111111 1111100000000
Q ss_pred HHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHH---HhCCHHHHHHHHHHHHhh---CCCCHHHHHHHH
Q psy17306 202 QNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYK---ERGQLQEALENYRHAVRL---KPDFIDGYINLA 275 (904)
Q Consensus 202 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~---~p~~~~~~~~la 275 (904)
......... .. ......+......++.....+..+|..+. ..++|++|+..|++++.. .|....++..+|
T Consensus 263 ~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg 338 (615)
T TIGR00990 263 FVGNYLQSF-RP---KPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRG 338 (615)
T ss_pred HHHHHHHHc-cC---CcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 000000000 00 00001112333444544455555555443 347899999999999986 477788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHH
Q psy17306 276 AALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVN 355 (904)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (904)
.++..+|++++|+..|++++..+|+..
T Consensus 339 ~~~~~~g~~~eA~~~~~kal~l~P~~~----------------------------------------------------- 365 (615)
T TIGR00990 339 TFKCLKGKHLEALADLSKSIELDPRVT----------------------------------------------------- 365 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcH-----------------------------------------------------
Confidence 999999999999999999999988761
Q ss_pred HHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcc
Q psy17306 356 IKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLT 435 (904)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~ 435 (904)
T Consensus 366 -------------------------------------------------------------------------------- 365 (615)
T TIGR00990 366 -------------------------------------------------------------------------------- 365 (615)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHH
Q psy17306 436 KADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAY 515 (904)
Q Consensus 436 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 515 (904)
T Consensus 366 -------------------------------------------------------------------------------- 365 (615)
T TIGR00990 366 -------------------------------------------------------------------------------- 365 (615)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHH
Q psy17306 516 LLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 595 (904)
Q Consensus 516 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~ 595 (904)
..|..+|.++...|++++|+..|++ ++..+|+++.+++.+|.++
T Consensus 366 -------------------------~~~~~la~~~~~~g~~~eA~~~~~~-----------al~~~p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 366 -------------------------QSYIKRASMNLELGDPDKAEEDFDK-----------ALKLNSEDPDIYYHRAQLH 409 (615)
T ss_pred -------------------------HHHHHHHHHHHHCCCHHHHHHHHHH-----------HHHhCCCCHHHHHHHHHHH
Confidence 1236677788889999999999999 9999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHH
Q psy17306 596 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFN 675 (904)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~ 675 (904)
...|++++|+.+|+++++++|++..++.++|.++..+|++++|+. .+.+++...|+++.++..+|.++.
T Consensus 410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~-----------~~~~al~~~P~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMA-----------TFRRCKKNFPEAPDVYNYYGELLL 478 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHH-----------HHHHHHHhCCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 666677788999999999999999
Q ss_pred hCCCHHHHHHHHHHHHhcCcCcHHHH------HHHHHHH-HHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHH
Q psy17306 676 AQGEIWLAIHHFEKAVSLDPNFLDAY------INLGNVL-KEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEEL 748 (904)
Q Consensus 676 ~~g~~~~A~~~~~~al~~~p~~~~a~------~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 748 (904)
.+|++++|+..|+++++++|.+...+ .+.+.++ ...|++++|+.+|++++...|++......++.+....+++
T Consensus 479 ~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 479 DQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred HccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCH
Confidence 99999999999999999998754332 3333333 4479999999999999999998888888999999999999
Q ss_pred HHHHHHcCCC
Q psy17306 749 NKKFEQLGES 758 (904)
Q Consensus 749 ~~~~~~l~~~ 758 (904)
++++..+...
T Consensus 559 ~eAi~~~e~A 568 (615)
T TIGR00990 559 DEALKLFERA 568 (615)
T ss_pred HHHHHHHHHH
Confidence 9998776544
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=7.6e-30 Score=289.78 Aligned_cols=132 Identities=13% Similarity=0.034 Sum_probs=82.1
Q ss_pred hhCchhHhhcCChhH----HHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q psy17306 544 NVEPDLTREGGSIPI----TLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 619 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~----A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 619 (904)
..+|.++...|++++ |+..|++ ++..+|+++.++..+|.++...|++++|+..++++++++|+++
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~-----------Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~ 318 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRH-----------ALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP 318 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHH-----------HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 334444445555543 4555555 6666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc
Q psy17306 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697 (904)
Q Consensus 620 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 697 (904)
.++.++|.++...|++++|+. .+.+++..+|+++.++..+|.++...|++++|+..|+++++.+|++
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~-----------~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASD-----------EFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHH-----------HHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 666666666666666666666 4444445555555555556666666666666666666666666654
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=4.5e-29 Score=290.13 Aligned_cols=421 Identities=14% Similarity=0.067 Sum_probs=342.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE 88 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 88 (904)
...-.-..+....|++++|+..+.++...+|..+.++..+|.++...|++++|+..++++++.+|.++.++..+|.++..
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34455667788999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred hCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHH
Q psy17306 89 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC 168 (904)
Q Consensus 89 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (904)
.|++++|+..+++++..+|+++. +..+|.++...|++++|+..++++++.+|++..++..++.++...+..++|+..++
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999888887771
Q ss_pred HHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhC
Q psy17306 169 VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERG 248 (904)
Q Consensus 169 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 248 (904)
....... ....+..++....+...++......+
T Consensus 175 ~~~~~p~-----------------------------------------------~~~~l~~~~~~~~~r~~~~~~~~~~~ 207 (765)
T PRK10049 175 DANLTPA-----------------------------------------------EKRDLEADAAAELVRLSFMPTRSEKE 207 (765)
T ss_pred hCCCCHH-----------------------------------------------HHHHHHHHHHHHHHHhhcccccChhH
Confidence 0000000 00111111211222222222222334
Q ss_pred CH---HHHHHHHHHHHhhCCCCHHH-------HHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHH
Q psy17306 249 QL---QEALENYRHAVRLKPDFIDG-------YIN-LAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFE 317 (904)
Q Consensus 249 ~~---~~A~~~~~~al~~~p~~~~~-------~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 317 (904)
++ ++|+..++.+++..|.++.. ... ++ .+...|++++|+..|+++++..+..|.
T Consensus 208 r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~-------------- 272 (765)
T PRK10049 208 RYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPP-------------- 272 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCH--------------
Confidence 45 78899999988764443322 222 33 345778999999999998876543310
Q ss_pred HHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccc
Q psy17306 318 RRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILI 397 (904)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~ 397 (904)
T Consensus 273 -------------------------------------------------------------------------------- 272 (765)
T PRK10049 273 -------------------------------------------------------------------------------- 272 (765)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCccccc
Q psy17306 398 PHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGK 477 (904)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (904)
T Consensus 273 -------------------------------------------------------------------------------- 272 (765)
T PRK10049 273 -------------------------------------------------------------------------------- 272 (765)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChh
Q psy17306 478 FSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIP 557 (904)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 557 (904)
+ +...+|.++...|+++
T Consensus 273 ---------------------------------------------------~------------a~~~la~~yl~~g~~e 289 (765)
T PRK10049 273 ---------------------------------------------------W------------AQRWVASAYLKLHQPE 289 (765)
T ss_pred ---------------------------------------------------H------------HHHHHHHHHHhcCCcH
Confidence 0 0022366788899999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHhCCch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------------c
Q psy17306 558 ITLTFECRKLDKSAHFSTLAIKQNPLL----AEAYSNLGNVYKERGQLQEALENYRHAVRLKPD---------------F 618 (904)
Q Consensus 558 ~A~~~~~~~l~~a~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------~ 618 (904)
+|+..|++ ++..+|.+ ......++.++...|++++|+..++++....|. .
T Consensus 290 ~A~~~l~~-----------~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 290 KAQSILTE-----------LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHHHHH-----------HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 99999999 88877765 456778888899999999999999999998763 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcH
Q psy17306 619 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL 698 (904)
Q Consensus 619 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 698 (904)
..++..+|.++...|++++|++ .+.+++...|+++.++..+|.++...|++++|+..++++++++|+++
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~-----------~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~ 427 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEM-----------RARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNI 427 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh
Confidence 4577899999999999999999 77777788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHH
Q psy17306 699 DAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVI 737 (904)
Q Consensus 699 ~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 737 (904)
.+++.+|.++...|++++|...+++++...|++..+...
T Consensus 428 ~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 428 NLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRL 466 (765)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999999999999999987755543
No 16
>KOG0547|consensus
Probab=99.98 E-value=6.9e-29 Score=245.19 Aligned_cols=189 Identities=21% Similarity=0.206 Sum_probs=156.5
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 622 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 622 (904)
|+..|.+++-.+++++|+.-|++ ++.++|+++.++..++.+.+++++++++...|+.+.+..|+.++.+
T Consensus 397 YyHRgQm~flL~q~e~A~aDF~K-----------ai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy 465 (606)
T KOG0547|consen 397 YYHRGQMRFLLQQYEEAIADFQK-----------AISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVY 465 (606)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHH-----------HhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHH
Confidence 47778888888999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcCcCcHHHH
Q psy17306 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFN-AQGEIWLAIHHFEKAVSLDPNFLDAY 701 (904)
Q Consensus 623 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~ 701 (904)
...|.++..++++++|++.|.+++++.|..-.-.+ ++..+.+-|.+.. -.+++..|+..+++|+++||.+..++
T Consensus 466 ~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v-----~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~ 540 (606)
T KOG0547|consen 466 NLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV-----NAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAY 540 (606)
T ss_pred HHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc-----cchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHH
Confidence 99999999999999999966666554443111001 3333444443332 24899999999999999999999999
Q ss_pred HHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHH
Q psy17306 702 INLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEE 747 (904)
Q Consensus 702 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 747 (904)
..||.+..++|+.++|+++|+++.....+..+....+.-++....+
T Consensus 541 ~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~a~s~aeAAraq 586 (606)
T KOG0547|consen 541 ETLAQFELQRGKIDEAIELFEKSAQLARTESEMVHAYSLAEAARAQ 586 (606)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999998877766666555555554433
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.98 E-value=7.3e-29 Score=281.80 Aligned_cols=363 Identities=14% Similarity=0.047 Sum_probs=310.2
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy17306 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLL 154 (904)
Q Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 154 (904)
+..-....+..+...|++++|+..++.++...|.++.++..+|.+....|++++|+..+++++..+|+++.++..+|.++
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34455666777788899999999999999989998888888888888899999999999999999999888888888888
Q ss_pred HHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhH
Q psy17306 155 KALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLA 234 (904)
Q Consensus 155 ~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (904)
...|++++|+..+ .+++..+|+++
T Consensus 121 ~~~g~~~~Ai~~l--------------------------------------------------------~~Al~l~P~~~ 144 (656)
T PRK15174 121 LKSKQYATVADLA--------------------------------------------------------EQAWLAFSGNS 144 (656)
T ss_pred HHcCCHHHHHHHH--------------------------------------------------------HHHHHhCCCcH
Confidence 8888888888877 67888888888
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccc
Q psy17306 235 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVL 314 (904)
Q Consensus 235 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 314 (904)
.++..+|.++...|++++|+..+++++...|+++.++..++ .+...|++++|+..+++++...|....
T Consensus 145 ~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~----------- 212 (656)
T PRK15174 145 QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQ----------- 212 (656)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcch-----------
Confidence 99999999999999999999999999999999888887764 478899999999999998877653300
Q ss_pred cHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCc
Q psy17306 315 DFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGK 394 (904)
Q Consensus 315 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 394 (904)
T Consensus 213 -------------------------------------------------------------------------------- 212 (656)
T PRK15174 213 -------------------------------------------------------------------------------- 212 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcc
Q psy17306 395 ILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKV 474 (904)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (904)
T Consensus 213 -------------------------------------------------------------------------------- 212 (656)
T PRK15174 213 -------------------------------------------------------------------------------- 212 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcC
Q psy17306 475 VGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGG 554 (904)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 554 (904)
.....++.++...|
T Consensus 213 ------------------------------------------------------------------~~~~~l~~~l~~~g 226 (656)
T PRK15174 213 ------------------------------------------------------------------ESAGLAVDTLCAVG 226 (656)
T ss_pred ------------------------------------------------------------------hHHHHHHHHHHHCC
Confidence 00023345566889
Q ss_pred ChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy17306 555 SIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE----ALENYRHAVRLKPDFIDGYINLAAALV 630 (904)
Q Consensus 555 ~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~~p~~~~a~~~lg~~~~ 630 (904)
++++|+..+++ ++..+|+++.+++.+|.++...|++++ |+..|+++++++|+++.++.++|.++.
T Consensus 227 ~~~eA~~~~~~-----------al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 295 (656)
T PRK15174 227 KYQEAIQTGES-----------ALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALI 295 (656)
T ss_pred CHHHHHHHHHH-----------HHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999986 899999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q psy17306 631 AAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKE 710 (904)
Q Consensus 631 ~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 710 (904)
..|++++|+. .+++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++..
T Consensus 296 ~~g~~~eA~~-----------~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~ 364 (656)
T PRK15174 296 RTGQNEKAIP-----------LLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQ 364 (656)
T ss_pred HCCCHHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 9999999999 67777788999999999999999999999999999999999999999888889999999
Q ss_pred hcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy17306 711 ARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKFEQLGES 758 (904)
Q Consensus 711 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 758 (904)
.|++++|+..|++++...|+... ..+......+.++++..+..
T Consensus 365 ~G~~deA~~~l~~al~~~P~~~~-----~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 365 AGKTSEAESVFEHYIQARASHLP-----QSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred CCCHHHHHHHHHHHHHhChhhch-----hhHHHHHHHHHHHHHhcCCc
Confidence 99999999999999998876432 22223445556666555433
No 18
>KOG2076|consensus
Probab=99.97 E-value=1.4e-25 Score=239.13 Aligned_cols=642 Identities=15% Similarity=0.139 Sum_probs=389.0
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGN 84 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 84 (904)
+...+.++..|..++..|++++|..++.++++++|.++.+|..+|.+|-.+|+.+++...+-.|--++|++...|..++.
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-----hhHHHHHHHHHHHcCC
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL-----YCVRSDLGNLLKALGR 159 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~ 159 (904)
...++|++.+|.-+|.+|++.+|.+.......+.+|.++|+...|...|.+++...|.. ...-...+..+...++
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999932 1223344666777777
Q ss_pred hHHHHHHHH-------------HHHhhHHHHHHcCCHHHHHHHHhhcCC----------------------------Ccc
Q psy17306 160 LDEAKDLYC-------------VRSDLGNLLKALGRLDEAKNLHTENIK----------------------------PVT 198 (904)
Q Consensus 160 ~~~A~~~~~-------------~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------------~~~ 198 (904)
-+.|.+.+. ....++.++.....++.|......... ...
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 788887773 444567888888888888877654322 000
Q ss_pred hhhH--HHHHHhhcCCCcchHHHhhHHHHHhhc-CchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-CHHHHHHH
Q psy17306 199 MKVQ--NAIVCNYGGRKPTTLESAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD-FIDGYINL 274 (904)
Q Consensus 199 ~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 274 (904)
.... ...++....+.....+++..+...-.. ..+++..+..++.++...|++.+|+.+|..+....+. +..+|+.+
T Consensus 376 ~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 376 YDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred ccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 0000 111122223333333443322222121 2355788999999999999999999999998887543 46799999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhH
Q psy17306 275 AAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAV 354 (904)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (904)
|.||..+|.+++|++.|++++...|++. +....+..+....+..+.
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~p~~~----------------------------------D~Ri~Lasl~~~~g~~Ek 501 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILAPDNL----------------------------------DARITLASLYQQLGNHEK 501 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCch----------------------------------hhhhhHHHHHHhcCCHHH
Confidence 9999999999999999999999999982 222233333333444444
Q ss_pred HHHhhhccccccccCCCcc-------hhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHH
Q psy17306 355 NIKIECASKDLHSGLFGGS-------VHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRT 427 (904)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 427 (904)
++................. ......+.+...|.... | ++.+......
T Consensus 502 alEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~-----------------------f---i~t~~~Lv~~ 555 (895)
T KOG2076|consen 502 ALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE-----------------------F---INTASTLVDD 555 (895)
T ss_pred HHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH-----------------------H---HHHHHHHHHH
Confidence 4333332111110000011 11222333333333210 1 1111111111
Q ss_pred hhc---C-CCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCccccc---chhcccCCCcchhhHhhhHHHHH
Q psy17306 428 AID---H-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGK---FSIRIVPNQTPQCVEKYVLDYLN 500 (904)
Q Consensus 428 ~l~---~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~ 500 (904)
.+. . |+...............+..-.+..+.......++.....+..... .........-...++ +...+.
T Consensus 556 ~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe--l~~e~i 633 (895)
T KOG2076|consen 556 FLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE--LFRELI 633 (895)
T ss_pred HHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH--HHHHHH
Confidence 111 1 2222211111111111111111111111111111111111111110 000001111111111 111111
Q ss_pred HHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhh-----------
Q psy17306 501 ELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDK----------- 569 (904)
Q Consensus 501 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~----------- 569 (904)
......+...++......+.........+ .....+. +....+....+++..|..+.+..+..
T Consensus 634 ~~L~k~~r~qeAl~vv~~a~~~~~f~~~~-~~~k~l~------~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 634 LSLAKLQRVQEALSVVFTALEAYIFFQDS-EIRKELQ------FLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHhHHHHHHHHHHHHhhhhhhccH-HHHHHHH------HHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 12222233333333333333332222221 1111111 22222334456666666665542211
Q ss_pred ----h-------------hhHHHHHHHhCCch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy17306 570 ----S-------------AHFSTLAIKQNPLL-AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 631 (904)
Q Consensus 570 ----a-------------~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 631 (904)
. ..++..+...+|.+ +.....-|..+...+.+.-|+..|-++...+|++|-.-..+|..+..
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 0 00111122233433 44445567777888889999999999999999998877777766654
Q ss_pred c--CC--------HHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc----
Q psy17306 632 A--GD--------MEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF---- 697 (904)
Q Consensus 632 ~--g~--------~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---- 697 (904)
+ ++ .-+++.++.+..+ +....+.-++.+|+|.+|...|=..-|+.+|+++|.+.|..
T Consensus 787 ~a~qr~v~~Rh~~i~qG~afL~RY~~---------lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~ 857 (895)
T KOG2076|consen 787 LALQRRVSNRHAQIAQGFAFLKRYKE---------LRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDP 857 (895)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHH---------hhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccc
Confidence 3 22 1123332222211 11222467899999999999999999999999999997543
Q ss_pred --------HHHHHHHHHHHHHhcchhHHHHHHHHh
Q psy17306 698 --------LDAYINLGNVLKEARIFDRANTLFYVS 724 (904)
Q Consensus 698 --------~~a~~~la~~~~~~g~~~~A~~~~~~a 724 (904)
-.+.+||..+|...|+...|.+++.+-
T Consensus 858 ~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 858 KEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred cCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhh
Confidence 468999999999999999999988764
No 19
>KOG0547|consensus
Probab=99.97 E-value=1.2e-26 Score=229.55 Aligned_cols=422 Identities=20% Similarity=0.175 Sum_probs=284.4
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q psy17306 6 QLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNV 85 (904)
Q Consensus 6 ~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 85 (904)
..+.++=.+|..+++.|+|++|+++|..++...|+.+..+.+++-||...|+|++.++...++++++|+...+++.++.+
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASA 192 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence 45777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCcHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCH----------------HHHHHHHHHHHhcCCCh-----
Q psy17306 86 YKERGQLQEALENYRHAVRLK-PDFIDGYINLAAALVAAGDM----------------EQAVQAYVTALQYNPDL----- 143 (904)
Q Consensus 86 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~----------------~~A~~~~~~al~~~p~~----- 143 (904)
+..+|++.+|+....-..-.. -.+......+-+++-.+|.- ..-+..|-....-+|..
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 999999999988765433221 11111111111111111110 11222232332222211
Q ss_pred -hhHHHHHHHH----HHH-cCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchH
Q psy17306 144 -YCVRSDLGNL----LKA-LGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTL 217 (904)
Q Consensus 144 -~~~~~~la~~----~~~-~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (904)
....-.+... +.. ...|..|...+.............+..+.-+
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l------------------------------ 322 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL------------------------------ 322 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH------------------------------
Confidence 1111122221 211 1245566555533333222222222221111
Q ss_pred HHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 297 (904)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 297 (904)
...+.++...|..++-.|++-.|...|+++|.++|.+...+..+|.+|...++.++-...|.++..+
T Consensus 323 -------------e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l 389 (606)
T KOG0547|consen 323 -------------EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL 389 (606)
T ss_pred -------------HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc
Confidence 1124455555666666666666666666666666665555666666666666666666666666666
Q ss_pred CCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhH
Q psy17306 298 NPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEA 377 (904)
Q Consensus 298 ~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (904)
+|.++
T Consensus 390 dp~n~--------------------------------------------------------------------------- 394 (606)
T KOG0547|consen 390 DPENP--------------------------------------------------------------------------- 394 (606)
T ss_pred CCCCC---------------------------------------------------------------------------
Confidence 66652
Q ss_pred HHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCcccccc
Q psy17306 378 MTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHG 456 (904)
Q Consensus 378 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~ 456 (904)
++|+..|++. ...+++++|+..|++++.+ |++.-
T Consensus 395 --dvYyHRgQm~-----------------------flL~q~e~A~aDF~Kai~L~pe~~~-------------------- 429 (606)
T KOG0547|consen 395 --DVYYHRGQMR-----------------------FLLQQYEEAIADFQKAISLDPENAY-------------------- 429 (606)
T ss_pred --chhHhHHHHH-----------------------HHHHHHHHHHHHHHHHhhcChhhhH--------------------
Confidence 1122222211 1222255555555555555 33321
Q ss_pred ccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHH
Q psy17306 457 IEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAA 536 (904)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 536 (904)
T Consensus 430 -------------------------------------------------------------------------------- 429 (606)
T KOG0547|consen 430 -------------------------------------------------------------------------------- 429 (606)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17306 537 RATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 616 (904)
Q Consensus 537 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 616 (904)
.|..++.+.++++++.+++..|+. ++...|+.++++...|.++..+++++.|++.|.+++.+.|
T Consensus 430 -----~~iQl~~a~Yr~~k~~~~m~~Fee-----------~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 430 -----AYIQLCCALYRQHKIAESMKTFEE-----------AKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 235667777888899999999999 9999999999999999999999999999999999999999
Q ss_pred C------cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy17306 617 D------FIDGYINLAAALVA-AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEK 689 (904)
Q Consensus 617 ~------~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 689 (904)
. ++..+...|.+..+ .+++..|++ .+.++++++|..-.++..||.+..++|+.++|+++|++
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~-----------Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWKEDINQAEN-----------LLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred ccccccccchhhhhhhHhhhchhhhHHHHHH-----------HHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9 67777777765543 478888888 77788888999999999999999999999999999999
Q ss_pred HHhcCcCc
Q psy17306 690 AVSLDPNF 697 (904)
Q Consensus 690 al~~~p~~ 697 (904)
++.+...-
T Consensus 563 sa~lArt~ 570 (606)
T KOG0547|consen 563 SAQLARTE 570 (606)
T ss_pred HHHHHHhH
Confidence 99885443
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=1.3e-26 Score=269.47 Aligned_cols=438 Identities=14% Similarity=0.059 Sum_probs=325.0
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCC
Q psy17306 28 ERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 107 (904)
Q Consensus 28 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 107 (904)
+..+++ -...|-++....-...+....|+.++|+..+.++...+|....++..+|.++...|++++|+..|++++..+|
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344555 4456677777777778888889999999999988887888888899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHH
Q psy17306 108 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAK 187 (904)
Q Consensus 108 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~ 187 (904)
.++.++..+|.++...|++++|+..++++++.+|+++. +..+|.++...|++++|+..+
T Consensus 81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l-------------------- 139 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAM-------------------- 139 (765)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHH--------------------
Confidence 98888889999999999999999999999999998888 888888888888888888877
Q ss_pred HHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q psy17306 188 NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 267 (904)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 267 (904)
++++...|+++.++..+|.++...+..++|+..++++.. .|+.
T Consensus 140 ------------------------------------~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~ 182 (765)
T PRK10049 140 ------------------------------------TQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAE 182 (765)
T ss_pred ------------------------------------HHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHH
Confidence 688888888888888888888888888888888887665 5441
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhh
Q psy17306 268 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISA 347 (904)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (904)
.... +...+....+-. ..+...
T Consensus 183 ~~~l-----------~~~~~~~~~r~~--~~~~~~--------------------------------------------- 204 (765)
T PRK10049 183 KRDL-----------EADAAAELVRLS--FMPTRS--------------------------------------------- 204 (765)
T ss_pred HHHH-----------HHHHHHHHHHhh--cccccC---------------------------------------------
Confidence 0000 000000000000 000000
Q ss_pred hhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHH
Q psy17306 348 NQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRT 427 (904)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 427 (904)
....+...+.|+..++.
T Consensus 205 ---------------------------------------------------------------~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 205 ---------------------------------------------------------------EKERYAIADRALAQYDA 221 (765)
T ss_pred ---------------------------------------------------------------hhHHHHHHHHHHHHHHH
Confidence 00000002345555555
Q ss_pred hhcC-CCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHh
Q psy17306 428 AIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKAR 506 (904)
Q Consensus 428 ~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 506 (904)
++.. |..+..
T Consensus 222 ll~~~~~~p~~--------------------------------------------------------------------- 232 (765)
T PRK10049 222 LEALWHDNPDA--------------------------------------------------------------------- 232 (765)
T ss_pred HHhhcccCCcc---------------------------------------------------------------------
Confidence 5443 222211
Q ss_pred cChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHh-hCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCch-
Q psy17306 507 NSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYN-VEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLL- 584 (904)
Q Consensus 507 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~- 584 (904)
.+... .+.. .++.+ ...|++++|+..|++ ++...|..
T Consensus 233 ----------------------~~~~~-------~a~~d~l~~L-l~~g~~~eA~~~~~~-----------ll~~~~~~P 271 (765)
T PRK10049 233 ----------------------TADYQ-------RARIDRLGAL-LARDRYKDVISEYQR-----------LKAEGQIIP 271 (765)
T ss_pred ----------------------chHHH-------HHHHHHHHHH-HHhhhHHHHHHHHHH-----------hhccCCCCC
Confidence 00000 0011 13333 466899999999999 77775322
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhH--HHhhh
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF----IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCY--LKAIE 658 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~l~ 658 (904)
..+...+|.++...|++++|+..|+++++.+|.+ ......++.++...|++++|+..++++....|... .....
T Consensus 272 ~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~ 351 (765)
T PRK10049 272 PWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPT 351 (765)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCC
Confidence 2234446999999999999999999999988876 45678888899999999999998888887766311 00123
Q ss_pred cCcch--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHH
Q psy17306 659 TRPDF--AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDV 736 (904)
Q Consensus 659 ~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 736 (904)
..|++ ..++..+|.++...|++++|++.+++++...|.++.++..+|.++...|++++|++.+++++...|++..+..
T Consensus 352 ~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~ 431 (765)
T PRK10049 352 SIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEV 431 (765)
T ss_pred CCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 34554 4678899999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHc
Q psy17306 737 ILERCEAKTEELNKKFEQL 755 (904)
Q Consensus 737 ~l~~~~~~~~~~~~~~~~l 755 (904)
..+......+++.++...+
T Consensus 432 ~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 432 EQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 8888888777777665544
No 21
>KOG0548|consensus
Probab=99.96 E-value=3e-26 Score=230.92 Aligned_cols=447 Identities=21% Similarity=0.251 Sum_probs=285.2
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q psy17306 47 LLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 126 (904)
Q Consensus 47 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 126 (904)
..|...+..|+|+.|+.+|..++.++|.|...+.+...+|..+|+|++|+..-.+.++++|+++..|..+|..+.-+|+|
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 34555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH---HHHHhh-----HHHHHHcCCHHHHHHHHhhcCCCc-
Q psy17306 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY---CVRSDL-----GNLLKALGRLDEAKNLHTENIKPV- 197 (904)
Q Consensus 127 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~---~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~~~- 197 (904)
++|+..|.+.|+.+|++.....+++.++... +. +...| ..+..+ .........+..-+..+++.-..+
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~~-~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLED--YA-ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--HH-hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 6666666666666666666666665555111 10 01111 000000 011111111111111111100000
Q ss_pred ----chhhHHHHHHhhcC----------------CCc-----chHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHH
Q psy17306 198 ----TMKVQNAIVCNYGG----------------RKP-----TTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 252 (904)
Q Consensus 198 ----~~~~~~~~~~~~~~----------------~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 252 (904)
.............. ... .....++. ................+|...+...++..
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d-~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIED-NTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccch-hHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 00000000000000 000 00000000 00000011224556789999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhccc
Q psy17306 253 ALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMK 332 (904)
Q Consensus 253 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 332 (904)
|+.+|..+++++ .+...+.+.+.+|+..|.+.+.+....++++.....-
T Consensus 243 a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r------------------------------ 291 (539)
T KOG0548|consen 243 AIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR------------------------------ 291 (539)
T ss_pred HHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH------------------------------
Confidence 999999999999 8899999999999999999999999999877655430
Q ss_pred ccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHH
Q psy17306 333 RPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEE 412 (904)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (904)
.....++.++..+|..+
T Consensus 292 ----------------------------------------ad~klIak~~~r~g~a~----------------------- 308 (539)
T KOG0548|consen 292 ----------------------------------------ADYKLIAKALARLGNAY----------------------- 308 (539)
T ss_pred ----------------------------------------HHHHHHHHHHHHhhhhh-----------------------
Confidence 01112334444444433
Q ss_pred HHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhH
Q psy17306 413 QFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVE 492 (904)
Q Consensus 413 ~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (904)
...+.++.++..|.+++..
T Consensus 309 ~k~~~~~~ai~~~~kaLte------------------------------------------------------------- 327 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALTE------------------------------------------------------------- 327 (539)
T ss_pred hhHHhHHHHHHHHHHHhhh-------------------------------------------------------------
Confidence 1123366777777776543
Q ss_pred hhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhh
Q psy17306 493 KYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAH 572 (904)
Q Consensus 493 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~ 572 (904)
..-.++.......++++.....
T Consensus 328 ---------------------------------------------------~Rt~~~ls~lk~~Ek~~k~~e~------- 349 (539)
T KOG0548|consen 328 ---------------------------------------------------HRTPDLLSKLKEAEKALKEAER------- 349 (539)
T ss_pred ---------------------------------------------------hcCHHHHHHHHHHHHHHHHHHH-------
Confidence 1112233344455566666655
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhh
Q psy17306 573 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSC 652 (904)
Q Consensus 573 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 652 (904)
..-.+|.-+.--...|..++..|+|..|+..|.++|..+|+++..|.|.|.||..+|.+..|+. .
T Consensus 350 ----~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~-----------D 414 (539)
T KOG0548|consen 350 ----KAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALK-----------D 414 (539)
T ss_pred ----HHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHH-----------H
Confidence 5556777777777889999999999999999999999999999999999999999999999999 8
Q ss_pred HHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 653 YLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 653 ~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
...+++++|+...+|..-|.++..+.+|++|++.|+++++.+|++..+...+..|...+.......++.+++.
T Consensus 415 a~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~~ 487 (539)
T KOG0548|consen 415 AKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRRAM 487 (539)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHhhc
Confidence 8888889999999999999999999999999999999999999999999999999988777777777777743
No 22
>KOG1173|consensus
Probab=99.95 E-value=8.4e-25 Score=221.11 Aligned_cols=490 Identities=13% Similarity=0.071 Sum_probs=365.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 90 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 90 (904)
+..+-+-+..+.+|.-|+-+-+++.... .+|.-.+.+|.+++-.|++.+|....+.- .+...+..+.+..+.++....
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk 96 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLK 96 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHH
Confidence 3444556778899999999999998877 78888999999999999999998888765 556677889999999999999
Q ss_pred cHHHHHHHHHHHH------hcCCCC-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhh
Q psy17306 91 QLQEALENYRHAV------RLKPDF-------------------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYC 145 (904)
Q Consensus 91 ~~~~A~~~~~~al------~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 145 (904)
+|++|+..+.+.- .-+|.+ ....+..|.+|..+.+.++|...|.+|+..++.+.+
T Consensus 97 ~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~E 176 (611)
T KOG1173|consen 97 EWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFE 176 (611)
T ss_pred HHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHH
Confidence 9999999888331 111111 224567788899999999999999999999999988
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCH-HHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHH
Q psy17306 146 VRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRL-DEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFST 224 (904)
Q Consensus 146 ~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 224 (904)
+...+........+ +-...+ ..+--.. ..+.. +.-...|+-........... .... +
T Consensus 177 a~~~lvs~~mlt~~--Ee~~ll---~~l~~a~-~~~ed~e~l~~lyel~~~k~~n~~~~----~r~~------------~ 234 (611)
T KOG1173|consen 177 AFEKLVSAHMLTAQ--EEFELL---ESLDLAM-LTKEDVERLEILYELKLCKNRNEESL----TRNE------------D 234 (611)
T ss_pred HHHHHHHHHhcchh--HHHHHH---hcccHHh-hhhhHHHHHHHHHHhhhhhhcccccc----ccCc------------h
Confidence 87776555443221 111111 0000000 00111 11111111000000000000 0000 0
Q ss_pred HHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccc
Q psy17306 225 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKE 304 (904)
Q Consensus 225 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 304 (904)
..+..-.++.......+..++..++|.+..+.++..++.+|-+...+...-.++...|+..+-...-.+..+..|+. +
T Consensus 235 ~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~--a 312 (611)
T KOG1173|consen 235 ESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSK--A 312 (611)
T ss_pred hhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCC--C
Confidence 11122234567788888888899999999999999999988887766544448888888888877788888888887 2
Q ss_pred cCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHH
Q psy17306 305 DGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYI 384 (904)
Q Consensus 305 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (904)
..|. .++..|+.
T Consensus 313 ~sW~--------------------------------------------------------------------aVg~YYl~ 324 (611)
T KOG1173|consen 313 LSWF--------------------------------------------------------------------AVGCYYLM 324 (611)
T ss_pred cchh--------------------------------------------------------------------hHHHHHHH
Confidence 2221 12222333
Q ss_pred hhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCccccccccccccC
Q psy17306 385 MGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSG 463 (904)
Q Consensus 385 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 463 (904)
+|. +.+|...|.++..+ |.+..
T Consensus 325 i~k------------------------------~seARry~SKat~lD~~fgp--------------------------- 347 (611)
T KOG1173|consen 325 IGK------------------------------YSEARRYFSKATTLDPTFGP--------------------------- 347 (611)
T ss_pred hcC------------------------------cHHHHHHHHHHhhcCccccH---------------------------
Confidence 333 77788888887776 44332
Q ss_pred CCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHH
Q psy17306 464 PGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVY 543 (904)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (904)
+|
T Consensus 348 ------------------------------------------------------------------------------aW 349 (611)
T KOG1173|consen 348 ------------------------------------------------------------------------------AW 349 (611)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 34
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
...|..+...|..++|+..|.. |-+..|........+|.-|...++++.|...|.+|+.+.|.++-.+.
T Consensus 350 l~fghsfa~e~EhdQAmaaY~t-----------Aarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~ 418 (611)
T KOG1173|consen 350 LAFGHSFAGEGEHDQAMAAYFT-----------AARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLH 418 (611)
T ss_pred HHHhHHhhhcchHHHHHHHHHH-----------HHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhh
Confidence 7788889999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy17306 624 NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYIN 703 (904)
Q Consensus 624 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 703 (904)
.+|.+.+..+.|.+|..+|+.++..- .....-.+.....+.+||.++.+++.+++|+.+|+++|.+.|.++.++..
T Consensus 419 Elgvvay~~~~y~~A~~~f~~~l~~i----k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~as 494 (611)
T KOG1173|consen 419 ELGVVAYTYEEYPEALKYFQKALEVI----KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHAS 494 (611)
T ss_pred hhhheeehHhhhHHHHHHHHHHHHHh----hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHH
Confidence 99999999999999999999988532 22333334456679999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHH
Q psy17306 704 LGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAK 744 (904)
Q Consensus 704 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 744 (904)
+|.+|..+|+++.|++.|.+++.+.|++.-+...++.+...
T Consensus 495 ig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 495 IGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999999999999999998888888766543
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.95 E-value=7.3e-24 Score=240.21 Aligned_cols=474 Identities=16% Similarity=0.080 Sum_probs=356.0
Q ss_pred HhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHH
Q psy17306 35 WRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 114 (904)
Q Consensus 35 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 114 (904)
.-..|..+...+..+.+.++.|+++.|+..|+++++.+|.++.+...++.++...|+.++|+.++++++.-.|.....+.
T Consensus 27 ~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 27 FVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred cccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 34578889999999999999999999999999999999998655558888888999999999999999944444455555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcC
Q psy17306 115 NLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENI 194 (904)
Q Consensus 115 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 194 (904)
.+|.++...|++++|++.|+++++.+|+++.++..++.++...++.++|+..+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l--------------------------- 159 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQA--------------------------- 159 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHH---------------------------
Confidence 56889999999999999999999999999999999999999999998888887
Q ss_pred CCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy17306 195 KPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 274 (904)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 274 (904)
.++...+|..... ..++.++...++..+|+..++++++.+|++..++..+
T Consensus 160 -----------------------------~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~ 209 (822)
T PRK14574 160 -----------------------------TELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNH 209 (822)
T ss_pred -----------------------------HHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5777888875554 5566666667888789999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhH
Q psy17306 275 AAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAV 354 (904)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (904)
..++...|-...|.+...+ .|+.+....+ ...+..
T Consensus 210 ~~~l~~~~~~~~a~~l~~~----~p~~f~~~~~------~~l~~~----------------------------------- 244 (822)
T PRK14574 210 LEILQRNRIVEPALRLAKE----NPNLVSAEHY------RQLERD----------------------------------- 244 (822)
T ss_pred HHHHHHcCCcHHHHHHHHh----CccccCHHHH------HHHHHH-----------------------------------
Confidence 9999999999888866554 4543110000 000000
Q ss_pred HHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CC
Q psy17306 355 NIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PK 433 (904)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~ 433 (904)
..+. ....+..... ....-....+.|+..++..+.. +.
T Consensus 245 ----------------------~~a~-~vr~a~~~~~------------------~~~~r~~~~d~ala~~~~l~~~~~~ 283 (822)
T PRK14574 245 ----------------------AAAE-QVRMAVLPTR------------------SETERFDIADKALADYQNLLTRWGK 283 (822)
T ss_pred ----------------------HHHH-HHhhcccccc------------------cchhhHHHHHHHHHHHHHHHhhccC
Confidence 0000 0000000000 0001112267788888887775 44
Q ss_pred cchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHH
Q psy17306 434 LTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFK 513 (904)
Q Consensus 434 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 513 (904)
.+.. . ..+.....+.+..+ ...+...
T Consensus 284 ~p~~-------------------------------------------------~-~~~~~~~~Drl~aL----~~r~r~~ 309 (822)
T PRK14574 284 DPEA-------------------------------------------------Q-ADYQRARIDRLGAL----LVRHQTA 309 (822)
T ss_pred CCcc-------------------------------------------------c-hHHHHHHHHHHHHH----HHhhhHH
Confidence 3322 0 00111112222222 2223344
Q ss_pred HHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhC------CchHHH
Q psy17306 514 AYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQN------PLLAEA 587 (904)
Q Consensus 514 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~------p~~~~~ 587 (904)
++++.+..+......-|... ....|+.|...++.++|+.+|+. ++... |.....
T Consensus 310 ~vi~~y~~l~~~~~~~P~y~---------~~a~adayl~~~~P~kA~~l~~~-----------~~~~~~~~~~~~~~~~~ 369 (822)
T PRK14574 310 DLIKEYEAMEAEGYKMPDYA---------RRWAASAYIDRRLPEKAAPILSS-----------LYYSDGKTFRNSDDLLD 369 (822)
T ss_pred HHHHHHHHhhhcCCCCCHHH---------HHHHHHHHHhcCCcHHHHHHHHH-----------HhhccccccCCCcchHH
Confidence 44444444443332223222 36688999999999999999999 66654 223344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhh
Q psy17306 588 YSNLGNVYKERGQLQEALENYRHAVRLK---------------PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSC 652 (904)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 652 (904)
...|-.++...+++++|....++..+.. |+...+...++.++...|++.+|++ .
T Consensus 370 ~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~-----------~ 438 (822)
T PRK14574 370 ADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK-----------K 438 (822)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH-----------H
Confidence 5778889999999999999999999843 4456788899999999999999999 7
Q ss_pred HHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChh
Q psy17306 653 YLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDE 732 (904)
Q Consensus 653 ~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 732 (904)
+++.+...|.++..+..+|.++...|++.+|...++.++.++|.+..+...+|.++..+|+|.+|.....+.++..|++.
T Consensus 439 le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 439 LEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 77777889999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hHHH
Q psy17306 733 DIDV 736 (904)
Q Consensus 733 ~~~~ 736 (904)
.+..
T Consensus 519 ~~~~ 522 (822)
T PRK14574 519 PSQE 522 (822)
T ss_pred hHHH
Confidence 6654
No 24
>KOG2003|consensus
Probab=99.95 E-value=8.5e-25 Score=213.69 Aligned_cols=468 Identities=19% Similarity=0.179 Sum_probs=333.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc-----cHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWR--QETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL-----LAEAY 79 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~ 79 (904)
.-..++.+|..|-...-+.+|+..|+-+++ ..|+....-..+|.++++..+|.+|+++|+.++..-|. ...++
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 345688999999999999999999988775 46777778888999999999999999999999998775 34578
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------CCChhh
Q psy17306 80 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY--------------NPDLYC 145 (904)
Q Consensus 80 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p~~~~ 145 (904)
.++|..+.+.|.|+.|+..|+.+++..|+.. +-+++..|++..|+-++..+.|.+.+.+ +|++.-
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 8899999999999999999999999999854 4566778999999999999999999876 122111
Q ss_pred HHHHHH-HHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhH----HHHHHhhcCCCcchHHHh
Q psy17306 146 VRSDLG-NLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQ----NAIVCNYGGRKPTTLESA 220 (904)
Q Consensus 146 ~~~~la-~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~ 220 (904)
.-..+- ..+....+-.+ .+-++++..-.+.+.++..... .+.+..
T Consensus 359 l~eai~nd~lk~~ek~~k------------------a~aek~i~ta~kiiapvi~~~fa~g~dwcle~------------ 408 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENK------------------ADAEKAIITAAKIIAPVIAPDFAAGCDWCLES------------ 408 (840)
T ss_pred HHHHHhhHHHHHHHHhhh------------------hhHHHHHHHHHHHhccccccchhcccHHHHHH------------
Confidence 111110 11111111111 1112222222222222211100 000000
Q ss_pred hHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhh
Q psy17306 221 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF-IDGYINLAAALVAA--GDMEQAVQAYVTALQY 297 (904)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~--g~~~~A~~~~~~al~~ 297 (904)
-++....|-..+.-.+.+..+++.|+++.|++.+.-.-+.+... ..+-.+|..+++.+ .++.+|..+...++.+
T Consensus 409 ---lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~ 485 (840)
T KOG2003|consen 409 ---LKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI 485 (840)
T ss_pred ---HHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc
Confidence 01111222223344556667777888888887776554443322 23445555555553 3677777777777776
Q ss_pred CCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhH
Q psy17306 298 NPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEA 377 (904)
Q Consensus 298 ~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (904)
+.-+
T Consensus 486 dryn---------------------------------------------------------------------------- 489 (840)
T KOG2003|consen 486 DRYN---------------------------------------------------------------------------- 489 (840)
T ss_pred cccC----------------------------------------------------------------------------
Confidence 6655
Q ss_pred HHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCcccccc
Q psy17306 378 MTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHG 456 (904)
Q Consensus 378 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~ 456 (904)
+.++.+.|.....+|. +++|.+.|+.++.. .+.
T Consensus 490 -~~a~~nkgn~~f~ngd-----------------------~dka~~~ykeal~ndasc---------------------- 523 (840)
T KOG2003|consen 490 -AAALTNKGNIAFANGD-----------------------LDKAAEFYKEALNNDASC---------------------- 523 (840)
T ss_pred -HHHhhcCCceeeecCc-----------------------HHHHHHHHHHHHcCchHH----------------------
Confidence 2222333333333333 66677777766654 100
Q ss_pred ccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHH
Q psy17306 457 IEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAA 536 (904)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 536 (904)
T Consensus 524 -------------------------------------------------------------------------------- 523 (840)
T KOG2003|consen 524 -------------------------------------------------------------------------------- 523 (840)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17306 537 RATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 616 (904)
Q Consensus 537 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 616 (904)
..+++++|..+..+|+.++|+.+|-+ .-.+--+++.+++.++.+|..+.+..+|++++.++..+-|
T Consensus 524 ---~ealfniglt~e~~~~ldeald~f~k-----------lh~il~nn~evl~qianiye~led~aqaie~~~q~~slip 589 (840)
T KOG2003|consen 524 ---TEALFNIGLTAEALGNLDEALDCFLK-----------LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIP 589 (840)
T ss_pred ---HHHHHHhcccHHHhcCHHHHHHHHHH-----------HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCC
Confidence 12348889999999999999999988 5555566789999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC
Q psy17306 617 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696 (904)
Q Consensus 617 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 696 (904)
+++.++..||.+|-+.|+..+|.+ ++-.....-|.+.+..-.||..|....-+++|+.+|++|--+.|+
T Consensus 590 ~dp~ilskl~dlydqegdksqafq-----------~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQ-----------CHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhh-----------hhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999998 666667788888899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHH
Q psy17306 697 FLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDID 735 (904)
Q Consensus 697 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 735 (904)
.......++.|+.+.|+|.+|.+.|+..-...|.+-+..
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldcl 697 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCL 697 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHH
Confidence 888888899999999999999999998887777765443
No 25
>KOG0495|consensus
Probab=99.95 E-value=1.6e-22 Score=206.94 Aligned_cols=181 Identities=18% Similarity=0.099 Sum_probs=148.3
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
..+|.++.+.++.+.|...|.. .+...|.++-.|..++.+-...|+.-.|...++++.-.+|.+...|.
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~-----------G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwl 757 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQ-----------GTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWL 757 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHh-----------ccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHH
Confidence 7777777777777777777777 77777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhChh-------------------hHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHH
Q psy17306 624 NLAAALVAAGDMEQAVQAYVTALQYNPS-------------------CYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAI 684 (904)
Q Consensus 624 ~lg~~~~~~g~~~~A~~~~~~al~~~~~-------------------~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~ 684 (904)
....+-.+.|+.+.|.....+||+..|+ .+..+++.-.+++.++...|..+....++++|.
T Consensus 758 e~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar 837 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAR 837 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777764 344555566678889999999999999999999
Q ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHH
Q psy17306 685 HHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDID 735 (904)
Q Consensus 685 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 735 (904)
+.|.+++.++|++.++|..+-..+...|.-++-.++|.+.....|.....-
T Consensus 838 ~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W 888 (913)
T KOG0495|consen 838 EWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELW 888 (913)
T ss_pred HHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHH
Confidence 999999999999999999999999999999999999999998888765443
No 26
>KOG1155|consensus
Probab=99.95 E-value=2.7e-23 Score=204.77 Aligned_cols=381 Identities=17% Similarity=0.120 Sum_probs=306.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHH
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP--LLAEAYSNLGNVY 86 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~ 86 (904)
-.++..|.++...|..+.|++.+..++...|-+-.+|..++.+... ++.....+.--| .+...-+.++.++
T Consensus 165 fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 165 FLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 3466777788888888888888888887778777777777765432 223333332223 3445556677778
Q ss_pred HHhCcHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHH
Q psy17306 87 KERGQLQEALENYRHAVRL-KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKD 165 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 165 (904)
....+.++++.-++..+.. .|.+...-...|.+.....|+++|+..|+...+.+|-..+-.-.+.+++.-..+-.+ +.
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk-Ls 316 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK-LS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH-HH
Confidence 7778888888888888887 688787888888888899999999999999998888766555555555544333211 11
Q ss_pred HHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHH
Q psy17306 166 LYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYK 245 (904)
Q Consensus 166 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~ 245 (904)
.+ ...+..++.-.++....+|+.|.
T Consensus 317 ~L-------------------------------------------------------A~~v~~idKyR~ETCCiIaNYYS 341 (559)
T KOG1155|consen 317 YL-------------------------------------------------------AQNVSNIDKYRPETCCIIANYYS 341 (559)
T ss_pred HH-------------------------------------------------------HHHHHHhccCCccceeeehhHHH
Confidence 11 03455666667888899999999
Q ss_pred HhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHh
Q psy17306 246 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRR 325 (904)
Q Consensus 246 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~ 325 (904)
..++.++|+.+|+++++++|....+|..+|.-|..+++...|++.|++|++++|.+.
T Consensus 342 lr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy----------------------- 398 (559)
T KOG1155|consen 342 LRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY----------------------- 398 (559)
T ss_pred HHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH-----------------------
Confidence 999999999999999999999999999999999999999999999999999999871
Q ss_pred hhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccC
Q psy17306 326 GALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVE 405 (904)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 405 (904)
T Consensus 399 -------------------------------------------------------------------------------- 398 (559)
T KOG1155|consen 399 -------------------------------------------------------------------------------- 398 (559)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCC
Q psy17306 406 PLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPN 485 (904)
Q Consensus 406 ~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (904)
T Consensus 399 -------------------------------------------------------------------------------- 398 (559)
T KOG1155|consen 399 -------------------------------------------------------------------------------- 398 (559)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHH
Q psy17306 486 QTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECR 565 (904)
Q Consensus 486 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 565 (904)
.+|+.+|+.|.-.+...=|+-+|++
T Consensus 399 -------------------------------------------------------RAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 399 -------------------------------------------------------RAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred -------------------------------------------------------HHHhhhhHHHHHhcchHHHHHHHHH
Confidence 2357788888888888899999999
Q ss_pred HhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17306 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 645 (904)
Q Consensus 566 ~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 645 (904)
++...|+++..|..||.||.+.++.++|+.+|.+++.....+..++..||.+|.++++.++|..+|++.
T Consensus 424 -----------A~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 424 -----------ALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred -----------HHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888999999999999999999999999988
Q ss_pred HhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHH
Q psy17306 646 LQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLG 705 (904)
Q Consensus 646 l~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 705 (904)
++. ....-...|+...+...|+.-+.+.+++++|..+..+++.-++...++..-+-
T Consensus 493 v~~----~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlR 548 (559)
T KOG1155|consen 493 VEV----SELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLR 548 (559)
T ss_pred HHH----HHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 873 33334567778888888999999999999999999999998776655544333
No 27
>KOG0548|consensus
Probab=99.94 E-value=3.6e-24 Score=216.08 Aligned_cols=416 Identities=22% Similarity=0.249 Sum_probs=306.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE 88 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 88 (904)
..+-.+|...+..|+|+.|+.+|..++.++|.+...+.....+|...|+|++|++--.+.++++|.-+..|..+|..+..
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 44667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC------------------------HHHHHHHHHHHHhcCCChh
Q psy17306 89 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD------------------------MEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 89 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------------------------~~~A~~~~~~al~~~p~~~ 144 (904)
+|+|++|+..|.+.|+.+|++...+.+++.++..... .+.+.....+.+..+|.+.
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 9999999999999999999999999999988822200 0111122222222233222
Q ss_pred hHHHHHHHHHHHcCChHHHHHHH----------------------------------------------HHHHhhHHHHH
Q psy17306 145 CVRSDLGNLLKALGRLDEAKDLY----------------------------------------------CVRSDLGNLLK 178 (904)
Q Consensus 145 ~~~~~la~~~~~~~~~~~A~~~~----------------------------------------------~~~~~l~~~~~ 178 (904)
..+..--. ...+...+ .....+|....
T Consensus 163 ~~~l~d~r-------~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaay 235 (539)
T KOG0548|consen 163 KLYLNDPR-------LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAY 235 (539)
T ss_pred hcccccHH-------HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHH
Confidence 11111000 00000000 12223344444
Q ss_pred HcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17306 179 ALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYR 258 (904)
Q Consensus 179 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 258 (904)
...+++.|+. .+..++.++ .+...+.+.+-+++..|.+.+.+....
T Consensus 236 kkk~f~~a~q---------------------------------~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~ 281 (539)
T KOG0548|consen 236 KKKDFETAIQ---------------------------------HYAKALELA-TDITYLNNIAAVYLERGKYAECIELCE 281 (539)
T ss_pred HhhhHHHHHH---------------------------------HHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchH
Confidence 4444444444 445888888 888999999999999999999999999
Q ss_pred HHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcc
Q psy17306 259 HAVRLKPDF-------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMM 331 (904)
Q Consensus 259 ~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 331 (904)
.+++..... ..+...+|..+...++++.|+.+|.+++.......
T Consensus 282 ~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~----------------------------- 332 (539)
T KOG0548|consen 282 KAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD----------------------------- 332 (539)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH-----------------------------
Confidence 988775433 23445567788889999999999999886554320
Q ss_pred cccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccH
Q psy17306 332 KRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTE 411 (904)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (904)
.
T Consensus 333 -------------~------------------------------------------------------------------ 333 (539)
T KOG0548|consen 333 -------------L------------------------------------------------------------------ 333 (539)
T ss_pred -------------H------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhh
Q psy17306 412 EQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCV 491 (904)
Q Consensus 412 ~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (904)
..-.+..++++.......-.
T Consensus 334 ls~lk~~Ek~~k~~e~~a~~------------------------------------------------------------ 353 (539)
T KOG0548|consen 334 LSKLKEAEKALKEAERKAYI------------------------------------------------------------ 353 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhh------------------------------------------------------------
Confidence 00001122222222221111
Q ss_pred HhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhh
Q psy17306 492 EKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSA 571 (904)
Q Consensus 492 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~ 571 (904)
+|+-.. --...|..++..|+|..|+..|.+
T Consensus 354 ----------------------------------~pe~A~----------e~r~kGne~Fk~gdy~~Av~~Yte------ 383 (539)
T KOG0548|consen 354 ----------------------------------NPEKAE----------EEREKGNEAFKKGDYPEAVKHYTE------ 383 (539)
T ss_pred ----------------------------------ChhHHH----------HHHHHHHHHHhccCHHHHHHHHHH------
Confidence 111111 114558899999999999999999
Q ss_pred hHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChh
Q psy17306 572 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS 651 (904)
Q Consensus 572 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 651 (904)
+|..+|+++.+|.++|.||..+|++..|+...+.+++++|++..+|.+.|.++..+.+|++|++
T Consensus 384 -----AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAle----------- 447 (539)
T KOG0548|consen 384 -----AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALE----------- 447 (539)
T ss_pred -----HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHH
Q psy17306 652 CYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700 (904)
Q Consensus 652 ~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 700 (904)
.|.++++.+|++..+...+..|...+.......+..++++ .+|+-..+
T Consensus 448 ay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~~-~dpev~~i 495 (539)
T KOG0548|consen 448 AYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRRAM-ADPEVQAI 495 (539)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHhhc-cCHHHHHH
Confidence 6667777888888898899888887655555566666632 34543333
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=2.8e-22 Score=227.37 Aligned_cols=457 Identities=12% Similarity=-0.002 Sum_probs=336.8
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGN 84 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 84 (904)
|......+..+...++.|++..|+..|+++++.+|.++.....++.++...|+.++|+.++++++...|........+|.
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ 110 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAAR 110 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 55677889999999999999999999999999999996555588888899999999999999999444455556666688
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHH
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK 164 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 164 (904)
++..+|++++|+..|+++++.+|+++.++..++..+...++.++|+..++++...+|.+... ..++.++...++..+|+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL 189 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999986654 66677776778887788
Q ss_pred HHH-----------HHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHH-------Hhhc--------CCCcchHH
Q psy17306 165 DLY-----------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIV-------CNYG--------GRKPTTLE 218 (904)
Q Consensus 165 ~~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~~~~--------~~~~~~~~ 218 (904)
..+ +....+.......|-...|.++..+.-+.........+. .... ++......
T Consensus 190 ~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 190 QASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 888 355666778888888888888887655433322211111 0000 11123334
Q ss_pred HhhHHHHHhh---cCchh----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17306 219 SAHFSTLAIK---QNPLL----AEAYSNLGNVYKERGQLQEALENYRHAVRLK-PDFIDGYINLAAALVAAGDMEQAVQA 290 (904)
Q Consensus 219 a~~~~~~~~~---~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (904)
++..++..+. ..|.. ..+..-.-.++...|++.+++..|+...... |--..+....|..|...+++++|+.+
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l 349 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI 349 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 4555555554 33321 2223334445566677777777777755443 22334666677777777777777777
Q ss_pred HHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCC
Q psy17306 291 YVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLF 370 (904)
Q Consensus 291 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (904)
|++++...|....
T Consensus 350 ~~~~~~~~~~~~~------------------------------------------------------------------- 362 (822)
T PRK14574 350 LSSLYYSDGKTFR------------------------------------------------------------------- 362 (822)
T ss_pred HHHHhhccccccC-------------------------------------------------------------------
Confidence 7777655432100
Q ss_pred CcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccC
Q psy17306 371 GGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYP 450 (904)
Q Consensus 371 ~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~ 450 (904)
T Consensus 363 -------------------------------------------------------------------------------- 362 (822)
T PRK14574 363 -------------------------------------------------------------------------------- 362 (822)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCc
Q psy17306 451 SLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHP 530 (904)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 530 (904)
.|.+.
T Consensus 363 ---------------------------------------------------------------------------~~~~~ 367 (822)
T PRK14574 363 ---------------------------------------------------------------------------NSDDL 367 (822)
T ss_pred ---------------------------------------------------------------------------CCcch
Confidence 00000
Q ss_pred chHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhH---HH-HHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Q psy17306 531 NYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHF---ST-LAIKQNPLLAEAYSNLGNVYKERGQLQEALE 606 (904)
Q Consensus 531 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~---~~-~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 606 (904)
.....+.-.+...+++++|..+.++..+..--. +. ..-.-+|+...+...++.++...|++.+|++
T Consensus 368 ----------~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 368 ----------LDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ----------HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 000223344566777788877777722210000 00 0001245566788899999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHH
Q psy17306 607 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHH 686 (904)
Q Consensus 607 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 686 (904)
.+++.+...|.++..+..+|.++...|.+.+|.+ .++.+..++|++..+...+|.++..+|++.+|...
T Consensus 438 ~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~-----------~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 438 KLEDLSSTAPANQNLRIALASIYLARDLPRKAEQ-----------ELKAVESLAPRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH-----------HHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999999999999999999999999999999999 67777788999999999999999999999999999
Q ss_pred HHHHHhcCcCcHHHHHHHHH
Q psy17306 687 FEKAVSLDPNFLDAYINLGN 706 (904)
Q Consensus 687 ~~~al~~~p~~~~a~~~la~ 706 (904)
..++++..|+++... .|..
T Consensus 507 ~~~l~~~~Pe~~~~~-~l~r 525 (822)
T PRK14574 507 TDDVISRSPEDIPSQ-ELDR 525 (822)
T ss_pred HHHHHhhCCCchhHH-HHHH
Confidence 999999999998554 3444
No 29
>KOG1155|consensus
Probab=99.94 E-value=6.2e-23 Score=202.20 Aligned_cols=441 Identities=16% Similarity=0.140 Sum_probs=297.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--------------hCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc----C
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWR--------------QETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ----N 72 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~--------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~ 72 (904)
.+.+|..++....++.|.-.++.... ......+-...+-.-..........+..+.+-++. .
T Consensus 81 ~y~laks~fd~kEf~Raa~fL~~~~s~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~le~~~~~~ 160 (559)
T KOG1155|consen 81 IYLLAKSYFDCKEFERAAFFLQNCKSKKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPLESKHCGG 160 (559)
T ss_pred hhhhHhhhhhhHHHHHHHHHHHhcchHHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHHHHHHhcc
Confidence 46677788888888877766665421 12222111111111112222223334444443332 2
Q ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--ChhhHHHHH
Q psy17306 73 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP--DLYCVRSDL 150 (904)
Q Consensus 73 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l 150 (904)
..++..++..|.++.+.|....|+..|..++...|-+-.+|..|+.+... ++........-| .+.-.-..+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFL 233 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHH
Confidence 34578889999999999999999999999999999999999988877643 233333333334 334445567
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhc-
Q psy17306 151 GNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ- 229 (904)
Q Consensus 151 a~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~- 229 (904)
+.++....+.++++.-+ +.....
T Consensus 234 ~~a~~el~q~~e~~~k~--------------------------------------------------------e~l~~~g 257 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKK--------------------------------------------------------ERLSSVG 257 (559)
T ss_pred HHHHHHHHHHHHHHHHH--------------------------------------------------------HHHHhcc
Confidence 77777777888887666 233333
Q ss_pred CchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCC
Q psy17306 230 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNT 309 (904)
Q Consensus 230 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 309 (904)
-|.....-...|.+.....++++|+..|+...+.+|-..+-.-....+++-.++-.+-.-.-+.+..++.-.++
T Consensus 258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~E------ 331 (559)
T KOG1155|consen 258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPE------ 331 (559)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCcc------
Confidence 56666666777888888888888888888888888876666666666666655544444444555554433311
Q ss_pred CcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhccc
Q psy17306 310 EPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLV 389 (904)
Q Consensus 310 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 389 (904)
+...+|+-+
T Consensus 332 -----------------------------------------------------------------------TCCiIaNYY 340 (559)
T KOG1155|consen 332 -----------------------------------------------------------------------TCCIIANYY 340 (559)
T ss_pred -----------------------------------------------------------------------ceeeehhHH
Confidence 000011101
Q ss_pred ccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCccccccccccccCCCCcc
Q psy17306 390 EPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKT 468 (904)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 468 (904)
+...+.+.|+..|++++++ |+..
T Consensus 341 -----------------------Slr~eHEKAv~YFkRALkLNp~~~--------------------------------- 364 (559)
T KOG1155|consen 341 -----------------------SLRSEHEKAVMYFKRALKLNPKYL--------------------------------- 364 (559)
T ss_pred -----------------------HHHHhHHHHHHHHHHHHhcCcchh---------------------------------
Confidence 2223355566666655555 3222
Q ss_pred cccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCch
Q psy17306 469 VIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPD 548 (904)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 548 (904)
.+|..+|.
T Consensus 365 ------------------------------------------------------------------------~aWTLmGH 372 (559)
T KOG1155|consen 365 ------------------------------------------------------------------------SAWTLMGH 372 (559)
T ss_pred ------------------------------------------------------------------------HHHHHhhH
Confidence 13477888
Q ss_pred hHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy17306 549 LTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 628 (904)
Q Consensus 549 ~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 628 (904)
-|....+...|+..|++ +++++|.+-.+|+.+|..|..++.+.=|+-+|++|++..|+++..|..||.|
T Consensus 373 EyvEmKNt~AAi~sYRr-----------Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~C 441 (559)
T KOG1155|consen 373 EYVEMKNTHAAIESYRR-----------AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGEC 441 (559)
T ss_pred HHHHhcccHHHHHHHHH-----------HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 88888888888888888 8888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-------cCcCcHHHH
Q psy17306 629 LVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS-------LDPNFLDAY 701 (904)
Q Consensus 629 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-------~~p~~~~a~ 701 (904)
|.+.++.++|++ +|.+++.....+..++..||.+|.++++.++|..+|++.++ ++|+...+.
T Consensus 442 Y~kl~~~~eAiK-----------Cykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~ 510 (559)
T KOG1155|consen 442 YEKLNRLEEAIK-----------CYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKAR 510 (559)
T ss_pred HHHhccHHHHHH-----------HHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence 888888888888 66677777767778888888888888888888888888888 467677777
Q ss_pred HHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHH
Q psy17306 702 INLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERC 741 (904)
Q Consensus 702 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 741 (904)
.-|+.-+.+.+++++|..+-..++.-.+.-+.....+..+
T Consensus 511 ~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlRei 550 (559)
T KOG1155|consen 511 LFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREI 550 (559)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 7788888888888888888877777644334333333333
No 30
>KOG1126|consensus
Probab=99.94 E-value=9.7e-25 Score=225.88 Aligned_cols=169 Identities=20% Similarity=0.233 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHH--hCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy17306 77 EAYSNLGNVYKE--RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLL 154 (904)
Q Consensus 77 ~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 154 (904)
..+..+|..|.. +-+..+|+..|++.-...++...++..+|..|+.+++|++|.++|+.+-++.|-.....-.+..++
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L 397 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL 397 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence 345555555544 445678888888866667777788888888888888888888888888888886544433333333
Q ss_pred HHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhH
Q psy17306 155 KALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLA 234 (904)
Q Consensus 155 ~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (904)
..+.+-- ++..+ . +..+..+|+.|
T Consensus 398 WHLq~~v-~Ls~L-----------------------a--------------------------------q~Li~~~~~sP 421 (638)
T KOG1126|consen 398 WHLQDEV-ALSYL-----------------------A--------------------------------QDLIDTDPNSP 421 (638)
T ss_pred HHHHhhH-HHHHH-----------------------H--------------------------------HHHHhhCCCCc
Confidence 3332211 01111 0 34555566666
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 235 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 235 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
+.|..+|++|.-+++++.|+++|++|+.++|....++..+|.-+....+++.|..+|++++..+|.+
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence 6666666666666666666666666666666666666666666666666666666666665555544
No 31
>KOG1173|consensus
Probab=99.93 E-value=3.1e-23 Score=209.84 Aligned_cols=407 Identities=19% Similarity=0.207 Sum_probs=314.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHH------HhcCcc-------
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLA------IKQNPL------- 74 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~------- 74 (904)
....+-+|+.++..|++..|......- ..+..+....+..+.++....++++|..++.+. +..+|.
T Consensus 49 p~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~ 127 (611)
T KOG1173|consen 49 PADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLE 127 (611)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceec
Confidence 455678899999999999998877654 556677889999999999999999999988733 111111
Q ss_pred ------------cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-----------------C
Q psy17306 75 ------------LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG-----------------D 125 (904)
Q Consensus 75 ------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----------------~ 125 (904)
.....+.+|.+|....+.++|...|.+++..++.+.+++..+-..++-.- .
T Consensus 128 ~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~e 207 (611)
T KOG1173|consen 128 LNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKE 207 (611)
T ss_pred cCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhh
Confidence 12356788999999999999999999999999887776655543332211 1
Q ss_pred HHHHHHHHHHHH----------hcCC--------ChhhHHHHHHHHHHHcCChHHHHHHHHHHH------------hhHH
Q psy17306 126 MEQAVQAYVTAL----------QYNP--------DLYCVRSDLGNLLKALGRLDEAKDLYCVRS------------DLGN 175 (904)
Q Consensus 126 ~~~A~~~~~~al----------~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~------------~l~~ 175 (904)
..+=++.+-++. ..+| ++++.....+..+...+++.+..+..+... .+|
T Consensus 208 d~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia- 286 (611)
T KOG1173|consen 208 DVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA- 286 (611)
T ss_pred HHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH-
Confidence 111111111111 1122 346778888999999999999888772211 122
Q ss_pred HHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHH
Q psy17306 176 LLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALE 255 (904)
Q Consensus 176 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 255 (904)
.+...|+..+-.- .-.+.+...|..+..|+.+|..|...|++++|..
T Consensus 287 ~l~el~~~n~Lf~---------------------------------lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARr 333 (611)
T KOG1173|consen 287 CLYELGKSNKLFL---------------------------------LSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARR 333 (611)
T ss_pred HHHHhcccchHHH---------------------------------HHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHH
Confidence 2223332222111 1137778889999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccc
Q psy17306 256 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPV 335 (904)
Q Consensus 256 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 335 (904)
+|.++..++|....+|...|.++...|..++|+..|..|-++.|..-.
T Consensus 334 y~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl-------------------------------- 381 (611)
T KOG1173|consen 334 YFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL-------------------------------- 381 (611)
T ss_pred HHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc--------------------------------
Confidence 999999999999999999999999999999999999999888887600
Q ss_pred cchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHH
Q psy17306 336 LGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFY 415 (904)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (904)
T Consensus 382 -------------------------------------------------------------------------------- 381 (611)
T KOG1173|consen 382 -------------------------------------------------------------------------------- 381 (611)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhh
Q psy17306 416 EKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYV 495 (904)
Q Consensus 416 ~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (904)
T Consensus 382 -------------------------------------------------------------------------------- 381 (611)
T KOG1173|consen 382 -------------------------------------------------------------------------------- 381 (611)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHH
Q psy17306 496 LDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFST 575 (904)
Q Consensus 496 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~ 575 (904)
-..-+|.-|...++++.|..+|.+
T Consensus 382 ----------------------------------------------P~LYlgmey~~t~n~kLAe~Ff~~---------- 405 (611)
T KOG1173|consen 382 ----------------------------------------------PSLYLGMEYMRTNNLKLAEKFFKQ---------- 405 (611)
T ss_pred ----------------------------------------------hHHHHHHHHHHhccHHHHHHHHHH----------
Confidence 014466777788999999999999
Q ss_pred HHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK----PD---FIDGYINLAAALVAAGDMEQAVQAYVTALQY 648 (904)
Q Consensus 576 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 648 (904)
++.+.|.++..+..+|.+.+..+.|.+|..+|+.++..- +. ....+.|||.++.+++.+++|+.
T Consensus 406 -A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~-------- 476 (611)
T KOG1173|consen 406 -ALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID-------- 476 (611)
T ss_pred -HHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH--------
Confidence 999999999999999999999999999999999999432 22 34578999999999999999999
Q ss_pred ChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy17306 649 NPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLK 709 (904)
Q Consensus 649 ~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 709 (904)
.+++++...|.++.++..+|.+|..+|+++.|++.|.++|.++|++..+-.-|+.+..
T Consensus 477 ---~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 477 ---YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred ---HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 7777788899999999999999999999999999999999999999888877775543
No 32
>KOG1126|consensus
Probab=99.93 E-value=6.4e-24 Score=219.86 Aligned_cols=307 Identities=16% Similarity=0.173 Sum_probs=263.5
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHH
Q psy17306 111 DGYINLAAALVA--AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKN 188 (904)
Q Consensus 111 ~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~ 188 (904)
..+..+|..|.. +-+..+|+..|.+.-...++...++..+|..|+.+++|++|..+|
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F--------------------- 376 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIF--------------------- 376 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 345566666554 456789999999976777777788889999999999999998888
Q ss_pred HHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH
Q psy17306 189 LHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 268 (904)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 268 (904)
+.+-...|......-....++..+.+--+--...+..+..+|+.|
T Consensus 377 -----------------------------------~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sP 421 (638)
T KOG1126|consen 377 -----------------------------------SLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSP 421 (638)
T ss_pred -----------------------------------HHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCc
Confidence 455555665444444445555555444444445566778899999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhh
Q psy17306 269 DGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISAN 348 (904)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (904)
.+|..+|.||..+++++.|+++|+++++++|...
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa---------------------------------------------- 455 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA---------------------------------------------- 455 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc----------------------------------------------
Confidence 9999999999999999999999999999999770
Q ss_pred hhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHh
Q psy17306 349 QEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTA 428 (904)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 428 (904)
T Consensus 456 -------------------------------------------------------------------------------- 455 (638)
T KOG1126|consen 456 -------------------------------------------------------------------------------- 455 (638)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcC
Q psy17306 429 IDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNS 508 (904)
Q Consensus 429 l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 508 (904)
T Consensus 456 -------------------------------------------------------------------------------- 455 (638)
T KOG1126|consen 456 -------------------------------------------------------------------------------- 455 (638)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHH
Q psy17306 509 PNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAY 588 (904)
Q Consensus 509 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~ 588 (904)
.+|..+|.-+.....++.|...|+. ++..+|.+..+|
T Consensus 456 --------------------------------YayTLlGhE~~~~ee~d~a~~~fr~-----------Al~~~~rhYnAw 492 (638)
T KOG1126|consen 456 --------------------------------YAYTLLGHESIATEEFDKAMKSFRK-----------ALGVDPRHYNAW 492 (638)
T ss_pred --------------------------------hhhhhcCChhhhhHHHHhHHHHHHh-----------hhcCCchhhHHH
Confidence 1236667777778889999999999 999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHH
Q psy17306 589 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWS 668 (904)
Q Consensus 589 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~ 668 (904)
+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+. .+++|+.++|.++...+
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~-----------~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQ-----------LYEKAIHLDPKNPLCKY 561 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHH-----------HHHHHHhcCCCCchhHH
Confidence 9999999999999999999999999999999999999999999999999999 77788889999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhh
Q psy17306 669 NLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDED 733 (904)
Q Consensus 669 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 733 (904)
..|.++...+++++|+..+++.-++-|+...+++.+|.+|.+.|+.+.|+..|-=|.+..|...+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999887665
No 33
>KOG2076|consensus
Probab=99.93 E-value=2.6e-21 Score=206.78 Aligned_cols=646 Identities=17% Similarity=0.098 Sum_probs=368.2
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHH
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLG 83 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 83 (904)
-|....+++.+|.+|-+.|+.+++...+-.+-..+|++.+.|..++....++|.+++|.-+|.++++.+|.+....+..+
T Consensus 169 dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers 248 (895)
T KOG2076|consen 169 DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERS 248 (895)
T ss_pred CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 36678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCcHHHHHHHHHHHHhcCCCC----H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHH
Q psy17306 84 NVYKERGQLQEALENYRHAVRLKPDF----I-DGYINLAAALVAAGDMEQAVQAYVTALQYNP--DLYCVRSDLGNLLKA 156 (904)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~al~~~p~~----~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~ 156 (904)
.+|.++|+...|...|.+++...|.. . ..-...+..+...++-+.|++.++.++.... ...+-+..++.++..
T Consensus 249 ~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~ 328 (895)
T KOG2076|consen 249 SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK 328 (895)
T ss_pred HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 99999999999999999999999832 1 2233446777788888999999999988322 223456677777877
Q ss_pred cCChHHHHHHHH---------------------------------------H-HHhhHHHHHHcCCHHHHHHHHhhcCC-
Q psy17306 157 LGRLDEAKDLYC---------------------------------------V-RSDLGNLLKALGRLDEAKNLHTENIK- 195 (904)
Q Consensus 157 ~~~~~~A~~~~~---------------------------------------~-~~~l~~~~~~~g~~~~A~~~~~~~~~- 195 (904)
..+++.|..... + ...++.+..+.++..+++..+...-.
T Consensus 329 ~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~ 408 (895)
T KOG2076|consen 329 NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV 408 (895)
T ss_pred hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC
Confidence 777777766650 1 11222222333333333333221111
Q ss_pred -CcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCc-hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy17306 196 -PVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 273 (904)
Q Consensus 196 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 273 (904)
+........-+.......+....++.++..+....+ .+..+|+.+|.+|..+|.+++|+.+|++++...|++.++...
T Consensus 409 ~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~ 488 (895)
T KOG2076|consen 409 WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARIT 488 (895)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhh
Confidence 000000000011111222333344444445544443 336799999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhh
Q psy17306 274 LAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCA 353 (904)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (904)
|+.++..+|++++|.+.++....-++.+.+...|....-+. ......+...+.... -+-.....+.......-.+.
T Consensus 489 Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~-~~r~d~l~~~gk~E~---fi~t~~~Lv~~~~~~~~~f~ 564 (895)
T KOG2076|consen 489 LASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL-AHRCDILFQVGKREE---FINTASTLVDDFLKKRYIFP 564 (895)
T ss_pred HHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH-HHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999874443333333333211111 000000111110000 00000000000000000000
Q ss_pred HHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCccccc--ccccccCcc-cccH----------HHHHHHHhh
Q psy17306 354 VNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIP--HIYKDVEPL-GDTE----------EQFYEKIDF 420 (904)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~--~~~~~~~~~-~~~~----------~~~~~~~~~ 420 (904)
...+-......-......+.....+..+....+......+....+ ......+.+ ...| ..-.+++++
T Consensus 565 ~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qe 644 (895)
T KOG2076|consen 565 RNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQE 644 (895)
T ss_pred hHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHH
Confidence 000000000000000111111222222211111100000000000 000000100 0111 111233666
Q ss_pred hHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccC-CCcchhhHhhhHHHH
Q psy17306 421 DTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVP-NQTPQCVEKYVLDYL 499 (904)
Q Consensus 421 A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l 499 (904)
|......++..+.+.......-.+. ..++..++. ....+...+.+-.-+.. ......+. ..+
T Consensus 645 Al~vv~~a~~~~~f~~~~~~~k~l~--------~~~l~~s~~-----~~d~~~a~~~lR~~i~~~~~~~~~~q----~~l 707 (895)
T KOG2076|consen 645 ALSVVFTALEAYIFFQDSEIRKELQ--------FLGLKASLY-----ARDPGDAFSYLRSVITQFQFYLDVYQ----LNL 707 (895)
T ss_pred HHHHHHHHHhhhhhhccHHHHHHHH--------HHHHHHHHh-----cCCHHHHHHHHHHHHHHHhhhhhhHH----HHH
Confidence 6666666665522221111000000 000000000 00000000000000000 00000000 011
Q ss_pred HH-HHHHhcChhHHHHHHHhcccccccCCCC-cchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHH
Q psy17306 500 NE-LWKARNSPNKFKAYLLDSGKSWRTNPEH-PNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLA 577 (904)
Q Consensus 500 ~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~a 577 (904)
-. .+.......+-.-++.....+...+|++ +... ...|...+..+.+.-|+..|.+ +
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~----------~i~gh~~~~~~s~~~Al~~y~r-----------a 766 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLA----------LIYGHNLFVNASFKHALQEYMR-----------A 766 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccCCccee----------eeechhHhhccchHHHHHHHHH-----------H
Confidence 11 2222223333334444444566667766 4444 7788899999999999999999 9
Q ss_pred HHhCCchHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17306 578 IKQNPLLAEAYSNLGNVYKERG----------QLQEALENYRHAVRLKPD--FIDGYINLAAALVAAGDMEQAVQAYVTA 645 (904)
Q Consensus 578 l~~~p~~~~~~~~lg~~~~~~g----------~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a 645 (904)
...+|++|-.-..+|..+..+. ..-+++..+.+..++... .-++.+|+|.+|...|-..-|+.+|+++
T Consensus 767 ~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekv 846 (895)
T KOG2076|consen 767 FRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKV 846 (895)
T ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 9999999987777777664332 234566666666655433 6789999999999999999999999999
Q ss_pred HhhChhhHHHhhhcC-cchHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy17306 646 LQYNPSCYLKAIETR-PDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691 (904)
Q Consensus 646 l~~~~~~~~~~l~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 691 (904)
|...|-....--..+ .-.-.+-+||..+|...|+...|...+.+-+
T Consensus 847 L~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~kyl 893 (895)
T KOG2076|consen 847 LEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKYL 893 (895)
T ss_pred hCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhhc
Confidence 988763221100000 1124678999999999999999999988754
No 34
>KOG2003|consensus
Probab=99.92 E-value=1e-22 Score=199.19 Aligned_cols=509 Identities=17% Similarity=0.197 Sum_probs=358.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------CCC------CHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQ------------ETN------NTGVLLLLSSIHFQCRKLDKSAHFSTLAI 69 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~------------~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al 69 (904)
...++....+.-..|++.+|++-...+=+. -|. ...+++.++.-|.....+.+|+..|+-.+
T Consensus 149 v~ell~es~ian~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiiv 228 (840)
T KOG2003|consen 149 VMELLEESCIANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIV 228 (840)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhh
Confidence 344566666667788888888766554111 122 24578889999998999999999999887
Q ss_pred h--cCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy17306 70 K--QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF-----IDGYINLAAALVAAGDMEQAVQAYVTALQYNPD 142 (904)
Q Consensus 70 ~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 142 (904)
+ ..|+....-.++|.++++..+|.+|+.+|+-++..-|.. ...+.++|..+.+.|.|+.|+..|+.+.+..|+
T Consensus 229 knkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn 308 (840)
T KOG2003|consen 229 KNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN 308 (840)
T ss_pred cccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCcc
Confidence 6 467777788899999999999999999999999887764 457888999999999999999999999999997
Q ss_pred hhhHHHHHHHHHHHcCChHHHHHHHHHHHhhH-----HHHHHcCCH-HHHHHHHhhcCCCcchhhHHHHHHhh-cCCCcc
Q psy17306 143 LYCVRSDLGNLLKALGRLDEAKDLYCVRSDLG-----NLLKALGRL-DEAKNLHTENIKPVTMKVQNAIVCNY-GGRKPT 215 (904)
Q Consensus 143 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~-----~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 215 (904)
.. +-++|..+++..|+-++-.+.|..+..+- .-|.+..+- +. .++.++++ ...+..+ ..+...
T Consensus 309 ~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~--~ll~eai~-------nd~lk~~ek~~ka~ 378 (840)
T KOG2003|consen 309 FI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD--NLLNEAIK-------NDHLKNMEKENKAD 378 (840)
T ss_pred HH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch--HHHHHHHh-------hHHHHHHHHhhhhh
Confidence 65 44566778888888877777663333221 001110000 00 00000000 0011111 112223
Q ss_pred hHHHhhHHHHHh--hcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17306 216 TLESAHFSTLAI--KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293 (904)
Q Consensus 216 ~~~a~~~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (904)
..+++....+.+ -+.|+.+..+-+.-.+. +|..+. |-..+.-.+.+-.+.++|+++.|++.+.-
T Consensus 379 aek~i~ta~kiiapvi~~~fa~g~dwcle~l-------k~s~~~-------~la~dlei~ka~~~lk~~d~~~aieilkv 444 (840)
T KOG2003|consen 379 AEKAIITAAKIIAPVIAPDFAAGCDWCLESL-------KASQHA-------ELAIDLEINKAGELLKNGDIEGAIEILKV 444 (840)
T ss_pred HHHHHHHHHHHhccccccchhcccHHHHHHH-------HHhhhh-------hhhhhhhhhHHHHHHhccCHHHHHHHHHH
Confidence 333333222222 12222221111111111 111111 12223445667788999999999998876
Q ss_pred HHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcc
Q psy17306 294 ALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGS 373 (904)
Q Consensus 294 al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (904)
.-+.+..... .
T Consensus 445 ~~~kdnk~~s---------------------------------------------------------------------a 455 (840)
T KOG2003|consen 445 FEKKDNKTAS---------------------------------------------------------------------A 455 (840)
T ss_pred HHhccchhhH---------------------------------------------------------------------H
Confidence 6554443300 0
Q ss_pred hhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccc
Q psy17306 374 VHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLS 453 (904)
Q Consensus 374 ~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~ 453 (904)
.-.++..+++..|-
T Consensus 456 aa~nl~~l~flqgg------------------------------------------------------------------ 469 (840)
T KOG2003|consen 456 AANNLCALRFLQGG------------------------------------------------------------------ 469 (840)
T ss_pred HhhhhHHHHHHhcc------------------------------------------------------------------
Confidence 00011111111111
Q ss_pred cccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchH
Q psy17306 454 LHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYV 533 (904)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 533 (904)
.+..++..|.+. ++..+.-++..
T Consensus 470 -----------------------------------------------------k~~~~aqqyad~---aln~dryn~~a- 492 (840)
T KOG2003|consen 470 -----------------------------------------------------KDFADAQQYADI---ALNIDRYNAAA- 492 (840)
T ss_pred -----------------------------------------------------cchhHHHHHHHH---HhcccccCHHH-
Confidence 011111111111 11122222222
Q ss_pred HHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 534 AAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR 613 (904)
Q Consensus 534 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 613 (904)
..+.|.+.+..|++++|.+.|++ ++..+..+..+++++|..+..+|+.++|+++|-+.-.
T Consensus 493 ---------~~nkgn~~f~ngd~dka~~~yke-----------al~ndasc~ealfniglt~e~~~~ldeald~f~klh~ 552 (840)
T KOG2003|consen 493 ---------LTNKGNIAFANGDLDKAAEFYKE-----------ALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHA 552 (840)
T ss_pred ---------hhcCCceeeecCcHHHHHHHHHH-----------HHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH
Confidence 37889999999999999999999 9999999999999999999999999999999999988
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 614 LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 614 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
+--++...++.++.+|..+.+..+|++ .+.++..+-|++|.++..||.+|-+.|+-.+|..++-.....
T Consensus 553 il~nn~evl~qianiye~led~aqaie-----------~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry 621 (840)
T KOG2003|consen 553 ILLNNAEVLVQIANIYELLEDPAQAIE-----------LLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY 621 (840)
T ss_pred HHHhhHHHHHHHHHHHHHhhCHHHHHH-----------HHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc
Confidence 888899999999999999999999999 777888899999999999999999999999999999999999
Q ss_pred CcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q psy17306 694 DPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKFEQLGESSLRDFT 764 (904)
Q Consensus 694 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 764 (904)
.|-+.+....||..|....-+++|+.+|+++.-+.|+.......++.|..+++.+.++++.+... -++|+
T Consensus 622 fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~-hrkfp 691 (840)
T KOG2003|consen 622 FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI-HRKFP 691 (840)
T ss_pred cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH-HHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999988776 45554
No 35
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=6.2e-22 Score=215.85 Aligned_cols=204 Identities=18% Similarity=0.175 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC----HHHHHHHH
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF----IDGYINLA 117 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la 117 (904)
....+..|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 44566678888888999999999999999999888889999999999999999999999888754322 24678889
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCc
Q psy17306 118 AALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPV 197 (904)
Q Consensus 118 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 197 (904)
.++...|++++|+..|+++++.+|.+..++..++.++...|++++|+..+
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------------------------------ 164 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVA------------------------------ 164 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHH------------------------------
Confidence 99999999999999999999888888888888888888888888888777
Q ss_pred chhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchh-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy17306 198 TMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLL-----AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 272 (904)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 272 (904)
.+++...|.. ...+..+|.++...|++++|+..|+++++.+|++..++.
T Consensus 165 --------------------------~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 218 (389)
T PRK11788 165 --------------------------ERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASI 218 (389)
T ss_pred --------------------------HHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHH
Confidence 2333333322 345678999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 273 NLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
.+|.++...|++++|+..+++++...|.+
T Consensus 219 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 219 LLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 99999999999999999999999877654
No 36
>KOG0624|consensus
Probab=99.92 E-value=1.3e-21 Score=185.15 Aligned_cols=220 Identities=20% Similarity=0.264 Sum_probs=193.1
Q ss_pred CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy17306 38 ETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLA 117 (904)
Q Consensus 38 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 117 (904)
+|.+++-.+.+|.-++..|++..|+..|..+++.+|++..+++.+|.+|+.+|+-.-|+..+.+++++.|+...+.+..|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 55677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCChh---hHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcC
Q psy17306 118 AALVAAGDMEQAVQAYVTALQYNPDLY---CVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENI 194 (904)
Q Consensus 118 ~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 194 (904)
.+++++|.+++|...|+.++..+|++. ++...++.+-.... .......+...|+...|+.+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~-----------l~~ql~s~~~~GD~~~ai~~i~--- 179 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWV-----------LVQQLKSASGSGDCQNAIEMIT--- 179 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHH-----------HHHHHHHHhcCCchhhHHHHHH---
Confidence 999999999999999999999999653 33333333222211 1222233445667777766664
Q ss_pred CCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy17306 195 KPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 274 (904)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 274 (904)
..+++.|-++..+...+.+|...|+...|+.-++.+-++..++.+.++.+
T Consensus 180 ------------------------------~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yki 229 (504)
T KOG0624|consen 180 ------------------------------HLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKI 229 (504)
T ss_pred ------------------------------HHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHH
Confidence 88899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 275 AAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
+.+++..|+.+.++...+.+++++|++
T Consensus 230 s~L~Y~vgd~~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 230 SQLLYTVGDAENSLKEIRECLKLDPDH 256 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHccCcch
Confidence 999999999999999999999999998
No 37
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=9.7e-22 Score=214.34 Aligned_cols=238 Identities=17% Similarity=0.157 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc----cHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL----LAEAYSNLG 83 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la 83 (904)
....+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+. ...++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 3456677999999999999999999999999999999999999999999999999999999885432 236789999
Q ss_pred HHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhh-----HHHHHHHHHHHcC
Q psy17306 84 NVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYC-----VRSDLGNLLKALG 158 (904)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~~ 158 (904)
.+|...|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|.+.. .+..+|.++...|
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999998876532 3456666777777
Q ss_pred ChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHH
Q psy17306 159 RLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYS 238 (904)
Q Consensus 159 ~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (904)
++++|+..+ .+++...|+...++.
T Consensus 195 ~~~~A~~~~--------------------------------------------------------~~al~~~p~~~~~~~ 218 (389)
T PRK11788 195 DLDAARALL--------------------------------------------------------KKALAADPQCVRASI 218 (389)
T ss_pred CHHHHHHHH--------------------------------------------------------HHHHhHCcCCHHHHH
Confidence 777776666 577778888899999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 239 NLGNVYKERGQLQEALENYRHAVRLKPDF-IDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 239 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
.+|.++...|++++|+..|++++..+|.+ ..++..++.++...|++++|+..++++++..|+.
T Consensus 219 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 282 (389)
T PRK11788 219 LLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA 282 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999998876 4567889999999999999999999998887755
No 38
>PLN03077 Protein ECB2; Provisional
Probab=99.91 E-value=2.7e-20 Score=222.26 Aligned_cols=188 Identities=18% Similarity=0.198 Sum_probs=146.0
Q ss_pred HHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHH
Q psy17306 499 LNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAI 578 (904)
Q Consensus 499 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al 578 (904)
+-..|...++.+.+...++. . +.+.. +|+.+...|...|+.++|+..|++ ..
T Consensus 530 Li~~y~k~G~~~~A~~~f~~---~----~~d~~----------s~n~lI~~~~~~G~~~~A~~lf~~-----------M~ 581 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNS---H----EKDVV----------SWNILLTGYVAHGKGSMAVELFNR-----------MV 581 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHh---c----CCChh----------hHHHHHHHHHHcCCHHHHHHHHHH-----------HH
Confidence 44455555666665555433 2 22222 458888899999999999999998 55
Q ss_pred Hh--CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhH
Q psy17306 579 KQ--NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL---KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCY 653 (904)
Q Consensus 579 ~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 653 (904)
+. .|+ ..++..+-..+.+.|.+++|...|+.+.+. .|+ ...|..+..++.+.|++++|.+.++
T Consensus 582 ~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~---------- 649 (857)
T PLN03077 582 ESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFIN---------- 649 (857)
T ss_pred HcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHH----------
Confidence 43 454 445666667788999999999999999854 344 5789999999999999999999544
Q ss_pred HHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccC
Q psy17306 654 LKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMI 729 (904)
Q Consensus 654 ~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 729 (904)
+. ...|+ +.+|..|-..+...|+.+.|....+++++++|+++..+..++.+|...|+|++|.++.+...+...
T Consensus 650 -~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~ 722 (857)
T PLN03077 650 -KM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722 (857)
T ss_pred -HC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Confidence 32 24555 567888888888899999999999999999999999999999999999999999999888766543
No 39
>KOG1156|consensus
Probab=99.91 E-value=9.9e-20 Score=187.55 Aligned_cols=489 Identities=18% Similarity=0.182 Sum_probs=339.5
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHH
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLG 83 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 83 (904)
+|.-..++|..+.-.+..++|...++..+.+++..|.+++.+...|..+...|+-++|..+.+.++..++....+|..+|
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLG 82 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHH
Confidence 55667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHH
Q psy17306 84 NVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEA 163 (904)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 163 (904)
.++...++|++|+.+|+.|+.+.|++...+..++....++++++.......+.++..|..-..|...+..+...|++..|
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-------------------hHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHH
Q psy17306 164 KDLYCVRSD-------------------LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFST 224 (904)
Q Consensus 164 ~~~~~~~~~-------------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 224 (904)
...++.... ........|.+++|++.+..
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~-------------------------------- 210 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD-------------------------------- 210 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh--------------------------------
Confidence 888732211 12333344444444443321
Q ss_pred HHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCccc
Q psy17306 225 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV-QAYVTALQYNPLLKK 303 (904)
Q Consensus 225 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 303 (904)
.-..--+........|.++..++++++|...|...+..+|++...+..+-.++..-.+.-+++ ..|...-+..|...
T Consensus 211 -~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e- 288 (700)
T KOG1156|consen 211 -NEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE- 288 (700)
T ss_pred -hhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc-
Confidence 111111223455567899999999999999999999999999999988888886333344444 55555555555441
Q ss_pred ccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHH
Q psy17306 304 EDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIY 383 (904)
Q Consensus 304 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (904)
........++.++.............+...+..+...+..++....+..
T Consensus 289 -~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~------------------------------ 337 (700)
T KOG1156|consen 289 -CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVA------------------------------ 337 (700)
T ss_pred -cchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhH------------------------------
Confidence 1111111111112222222222222222222222222222111111100
Q ss_pred HhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccC
Q psy17306 384 IMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSG 463 (904)
Q Consensus 384 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 463 (904)
+ ++.-+..|...+.-
T Consensus 338 ------------------------------~---le~Lvt~y~~~L~~-------------------------------- 352 (700)
T KOG1156|consen 338 ------------------------------F---LEKLVTSYQHSLSG-------------------------------- 352 (700)
T ss_pred ------------------------------H---HHHHHHHHHhhccc--------------------------------
Confidence 0 00001111111100
Q ss_pred CCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHH
Q psy17306 464 PGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVY 543 (904)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (904)
.-..++.+....+-...+.+.+
T Consensus 353 ----------------------------------------------------------~~~f~~~D~~~~E~PttllWt~ 374 (700)
T KOG1156|consen 353 ----------------------------------------------------------TGMFNFLDDGKQEPPTTLLWTL 374 (700)
T ss_pred ----------------------------------------------------------ccCCCcccccccCCchHHHHHH
Confidence 0000000000000001123466
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
..++..+...|+++.|..+... ++...|..++.+...|+++...|+.++|...+..+.+++-.+...-.
T Consensus 375 y~laqh~D~~g~~~~A~~yId~-----------AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INs 443 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDL-----------AIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINS 443 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHH-----------HhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHH
Confidence 8888999999999999999999 99999999999999999999999999999999999999866655555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHH--HHHHHHhCCCHHHHHHHHHHHHhcCc
Q psy17306 624 NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSN--LGCVFNAQGEIWLAIHHFEKAVSLDP 695 (904)
Q Consensus 624 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~--lg~~~~~~g~~~~A~~~~~~al~~~p 695 (904)
.-|.-..+.++.++|.+...+--...-+ ++..=.+.--.|+. -|.+|.++|++..|++-|..+-....
T Consensus 444 KcAKYmLrAn~i~eA~~~~skFTr~~~~----~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~ 513 (700)
T KOG1156|consen 444 KCAKYMLRANEIEEAEEVLSKFTREGFG----AVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYK 513 (700)
T ss_pred HHHHHHHHccccHHHHHHHHHhhhcccc----hhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 6788888999999999955532221100 00000001113333 47889999999999988887766633
No 40
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.91 E-value=1.4e-24 Score=247.58 Aligned_cols=174 Identities=40% Similarity=0.711 Sum_probs=143.1
Q ss_pred HHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccCCCcccccccCchhhhhh----ccCCCccc
Q psy17306 717 ANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKFEQLGESSLRDFTLDAPTQSVYKFEGEDYREKQ----KIVPIGHW 792 (904)
Q Consensus 717 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~g~~~~~~~----~~~~~~~w 792 (904)
|..+| +..+..++++++..++.+.+.++.+++.+++.++..++ .|+++ ...++|.|.|++|...+ +......|
T Consensus 644 a~~~f-~~~~~~~~~~did~il~~~~~~~~~~~~~~~~~~~~~~-~f~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 720 (1033)
T PLN03142 644 AEMVF-SSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAI-KFKMD-DTAELYDFDDEDDKDENKLDFKKIVSDNW 720 (1033)
T ss_pred hHHhh-hccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHhchhhh-ccccc-CCcceeeecCccccchhhhhHhhhccccc
Confidence 34444 33345678999999999999999999999999998877 58775 35689999999887643 11122359
Q ss_pred cCCchhhhhhhcchhHHHHHHHhcCCCCCCCCCCCCCCCCccccccCC-chhHhHHHHHHHHHHhhcCccCCCCCCCCcc
Q psy17306 793 IEPPKRERKANYAVDAYFKEALRTSEPKAPKAPRPPKQPIVQDFQFFP-PRLFEILDQEIYYFRKTVGYKVPKNPELGSD 871 (904)
Q Consensus 793 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (904)
|+|++|||+.+|+||.||+++|+++.++.|++||+||+++|+|||||| +||.||+|+|++||.+.+ .+ ++.
T Consensus 721 ~~~~~re~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~l~~~e~~~~~~~~-----~~---~~~ 792 (1033)
T PLN03142 721 IDPPKRERKRNYSESEYFKQAMRQGAPAKPKEPRIPRMPQLHDFQFFNVQRLTELYEKEVRYLMQAH-----QK---GQL 792 (1033)
T ss_pred cccchhhhhcccchhHHHHHHHhcCCcccCCCCCCCCCCCCccccCCCHHHHHHHHHHHHHHHhccc-----cC---Cch
Confidence 999999999999999999999998778889999999999999999999 599999999999997643 22 112
Q ss_pred hHHHHHHHHhhhhccCCCCHHHHHHHHHHhhc
Q psy17306 872 ATKAQKEEQKKIDESEPLTEEELAEKEELLTQ 903 (904)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (904)
.. .+ .+|++||+++|||+||+++|++|+++
T Consensus 793 ~~-~~-~~~~~~~~~~~lt~~e~~~k~~l~~~ 822 (1033)
T PLN03142 793 KD-TI-DVAEPEEPGDPLTAEEQEEKEQLLEE 822 (1033)
T ss_pred hh-hh-hhccccccCCCCCHHHHHHHHHHHhc
Confidence 11 22 37999999999999999999999986
No 41
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.91 E-value=3.2e-20 Score=216.06 Aligned_cols=449 Identities=14% Similarity=0.084 Sum_probs=349.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHH
Q psy17306 10 GLLELAHREYQAGDYESAERHCMQLWRQET--NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ--NPLLAEAYSNLGNV 85 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~ 85 (904)
.+......+...|++++|+..|+.+....| .+...+..+...+...++++.|..++..+.+. .| +..++..+..+
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~ 167 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLM 167 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 455566778889999999999999876543 35678888889999999999999999988774 45 47888999999
Q ss_pred HHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHcCChHHHH
Q psy17306 86 YKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD-LYCVRSDLGNLLKALGRLDEAK 164 (904)
Q Consensus 86 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~ 164 (904)
|.+.|++++|...|++..+ | +..+|..+...|.+.|++++|+..|+++.+..+. +...+..+...+...|....+.
T Consensus 168 y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 9999999999999998753 3 4678999999999999999999999999876432 3456677777888889888888
Q ss_pred HHHH------------HHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCch
Q psy17306 165 DLYC------------VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL 232 (904)
Q Consensus 165 ~~~~------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 232 (904)
.++. .+..+...|.+.|++++|..+|++. .+.
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m------------------------------------~~~ 288 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM------------------------------------PEK 288 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC------------------------------------CCC
Confidence 7762 3455677888888888888888632 223
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCc
Q psy17306 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLK-PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEP 311 (904)
Q Consensus 233 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 311 (904)
+..+|..+...|.+.|++++|+..|++..... .-+..++..+..++.+.|++++|.+.+..+++......
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d--------- 359 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD--------- 359 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC---------
Confidence 46778888888888888888888888876643 22456788888888888888888888888877542220
Q ss_pred ccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhccccc
Q psy17306 312 FVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEP 391 (904)
Q Consensus 312 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 391 (904)
..+...+.+.|...|.
T Consensus 360 ------------------------------------------------------------~~~~~~Li~~y~k~G~---- 375 (697)
T PLN03081 360 ------------------------------------------------------------IVANTALVDLYSKWGR---- 375 (697)
T ss_pred ------------------------------------------------------------eeehHHHHHHHHHCCC----
Confidence 0122333333333333
Q ss_pred CCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCccccc
Q psy17306 392 NGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIP 471 (904)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 471 (904)
++.|...|+++...
T Consensus 376 --------------------------~~~A~~vf~~m~~~---------------------------------------- 389 (697)
T PLN03081 376 --------------------------MEDARNVFDRMPRK---------------------------------------- 389 (697)
T ss_pred --------------------------HHHHHHHHHhCCCC----------------------------------------
Confidence 45555555543211
Q ss_pred CcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHh
Q psy17306 472 GKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTR 551 (904)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 551 (904)
+. .+|+.+...|.
T Consensus 390 ---------------------------------------------------------d~----------~t~n~lI~~y~ 402 (697)
T PLN03081 390 ---------------------------------------------------------NL----------ISWNALIAGYG 402 (697)
T ss_pred ---------------------------------------------------------Ce----------eeHHHHHHHHH
Confidence 11 13588888999
Q ss_pred hcCChhHHHHHHHHHhhhhhhHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CcHHHHHHHHH
Q psy17306 552 EGGSIPITLTFECRKLDKSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP--DFIDGYINLAA 627 (904)
Q Consensus 552 ~~~~~~~A~~~~~~~l~~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~ 627 (904)
..|+.++|++.|++ .... .|+ ..++..+...+...|..++|.+.|+.+.+..+ .+...|..+..
T Consensus 403 ~~G~~~~A~~lf~~-----------M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 403 NHGRGTKAVEMFER-----------MIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred HcCCHHHHHHHHHH-----------HHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 99999999999999 5443 454 56788888899999999999999999986432 23568999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy17306 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNV 707 (904)
Q Consensus 628 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 707 (904)
++.+.|++++|.+.++ +. ...|+ ...|..+...+...|+.+.|...+++.+++.|++...|..++.+
T Consensus 471 ~l~r~G~~~eA~~~~~-----------~~-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~ 537 (697)
T PLN03081 471 LLGREGLLDEAYAMIR-----------RA-PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNL 537 (697)
T ss_pred HHHhcCCHHHHHHHHH-----------HC-CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHH
Confidence 9999999999999443 32 23454 46799999999999999999999999999999999999999999
Q ss_pred HHHhcchhHHHHHHHHhhcccC
Q psy17306 708 LKEARIFDRANTLFYVSSYFMI 729 (904)
Q Consensus 708 ~~~~g~~~~A~~~~~~a~~~~~ 729 (904)
|...|++++|.++++...+...
T Consensus 538 y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 538 YNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999998876653
No 42
>KOG1127|consensus
Probab=99.91 E-value=1.7e-21 Score=208.68 Aligned_cols=551 Identities=14% Similarity=0.088 Sum_probs=356.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc--------------------cHHHHHH
Q psy17306 22 GDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL--------------------LAEAYSN 81 (904)
Q Consensus 22 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------------------~~~~~~~ 81 (904)
+....|..+|+.++..+|.+ ....|.+......|..|...+......+-+ -....+.
T Consensus 382 ~~l~~as~~Ydn~lSaD~sn---~~akgl~~ie~~~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~ 458 (1238)
T KOG1127|consen 382 SILSWASICYDNALSADASN---QRAKGLAPIEANVYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLEC 458 (1238)
T ss_pred HHHHHHHHHHHHhhcCChhh---hhhcchhHHHHhhchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHH
Confidence 33445566666666666654 444555555566666666665555544311 1111111
Q ss_pred HHHHH-----HHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy17306 82 LGNVY-----KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKA 156 (904)
Q Consensus 82 la~~~-----~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 156 (904)
.+..+ +..++...|+..|-++++++|..+.++..+|.+|....+...|.++|.+|.++|+.+..+.-..+..|..
T Consensus 459 e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae 538 (1238)
T KOG1127|consen 459 ENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAE 538 (1238)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc
Confidence 11111 2345578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHH-------------HHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHH
Q psy17306 157 LGRLDEAKDLY-------------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFS 223 (904)
Q Consensus 157 ~~~~~~A~~~~-------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 223 (904)
...++.|.... ..|...|..|...++...|+..+
T Consensus 539 ~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~f--------------------------------- 585 (1238)
T KOG1127|consen 539 ESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEF--------------------------------- 585 (1238)
T ss_pred cccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHH---------------------------------
Confidence 99999998876 24445666666666666666666
Q ss_pred HHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCccc
Q psy17306 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKK 303 (904)
Q Consensus 224 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 303 (904)
+.++..+|.+...|..+|.+|...|++..|++.|.++..++|.+..+.+..+.+...+|+|.+|+..+...+.......
T Consensus 586 QsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~- 664 (1238)
T KOG1127|consen 586 QSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER- 664 (1238)
T ss_pred HHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-
Confidence 4888999999999999999999999999999999999999999999999999999999999999999999887554330
Q ss_pred ccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHH
Q psy17306 304 EDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIY 383 (904)
Q Consensus 304 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (904)
. ....++.++.
T Consensus 665 -~--------------------------------------------------------------------~q~gLaE~~i 675 (1238)
T KOG1127|consen 665 -T--------------------------------------------------------------------GQNGLAESVI 675 (1238)
T ss_pred -H--------------------------------------------------------------------hhhhHHHHHH
Confidence 0 0001111111
Q ss_pred HhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhh------cccCccccccc
Q psy17306 384 IMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSR------WRYPSLSLHGI 457 (904)
Q Consensus 384 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~------~~y~~~~~~~~ 457 (904)
.+.......|-.. .-..-++.+++.|.-++.+...... -....++. +.-.++.-..+
T Consensus 676 r~akd~~~~gf~~----------------kavd~~eksie~f~~~l~h~~~~~~-~~Wi~asdac~~f~q~e~~~vn~h~ 738 (1238)
T KOG1127|consen 676 RDAKDSAITGFQK----------------KAVDFFEKSIESFIVSLIHSLQSDR-LQWIVASDACYIFSQEEPSIVNMHY 738 (1238)
T ss_pred HHHHHHHHHHHhh----------------hhhHHHHHHHHHHHHHHHHhhhhhH-HHHHHHhHHHHHHHHhcccchHHHH
Confidence 1111110000000 0000022222222222221000000 00000000 00000000000
Q ss_pred cccccC----CCCccccc------CcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCC
Q psy17306 458 EGAFSG----PGGKTVIP------GKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNP 527 (904)
Q Consensus 458 ~~~~~~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 527 (904)
..++.+ .+...... ......+.+... ..+.-.-...++........-......++..+.+++++..
T Consensus 739 l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~----~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a 814 (1238)
T KOG1127|consen 739 LIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIH----MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA 814 (1238)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhc----cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh
Confidence 011100 00000000 000000011111 1111111222233233333333334577788888889988
Q ss_pred CCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Q psy17306 528 EHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALEN 607 (904)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 607 (904)
++...| +.+|.+ ...|.+.-|.-.|-+ .+...|.+...|.|+|.++....+++-|...
T Consensus 815 nn~~~W----------naLGVl-sg~gnva~aQHCfIk-----------s~~sep~~~~~W~NlgvL~l~n~d~E~A~~a 872 (1238)
T KOG1127|consen 815 NNEGLW----------NALGVL-SGIGNVACAQHCFIK-----------SRFSEPTCHCQWLNLGVLVLENQDFEHAEPA 872 (1238)
T ss_pred ccHHHH----------HHHHHh-hccchhhhhhhhhhh-----------hhhccccchhheeccceeEEecccHHHhhHH
Confidence 888888 777877 555777777777777 8889999999999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH--HHhhChh----------------------------------
Q psy17306 608 YRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT--ALQYNPS---------------------------------- 651 (904)
Q Consensus 608 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~--al~~~~~---------------------------------- 651 (904)
|.++..++|.+...|...+.+....|+.-++...|.. .+.+...
T Consensus 873 f~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sA 952 (1238)
T KOG1127|consen 873 FSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSA 952 (1238)
T ss_pred HHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhh
Confidence 9999999999999999999999999988888887766 2322210
Q ss_pred --hHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------CcCcHHHHHHHHHHHHHhcchhHHHHHH
Q psy17306 652 --CYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL------DPNFLDAYINLGNVLKEARIFDRANTLF 721 (904)
Q Consensus 652 --~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~la~~~~~~g~~~~A~~~~ 721 (904)
...+.+..+|+...++...|....+++.+..|.+.+.+.+.+ ...++.+--+.|++++..|+++.|...+
T Consensus 953 s~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~ 1030 (1238)
T KOG1127|consen 953 SLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKAS 1030 (1238)
T ss_pred HHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhh
Confidence 345566679999999999999999999999999999998776 2233446677777877777777665544
No 43
>PLN03077 Protein ECB2; Provisional
Probab=99.90 E-value=7.3e-19 Score=210.04 Aligned_cols=281 Identities=13% Similarity=0.054 Sum_probs=189.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHH
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWRQE-TNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL-LAEAYSNLGNVYKE 88 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 88 (904)
+......+...|++++|...|....... +.+...+..+...+...+..+.|...+..+++..+. +......+-..|.+
T Consensus 54 ~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~ 133 (857)
T PLN03077 54 SNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR 133 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh
Confidence 4556677889999999999999887742 345556666667777788888888888888776543 34455666677788
Q ss_pred hCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC------------------------
Q psy17306 89 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY--NPD------------------------ 142 (904)
Q Consensus 89 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~------------------------ 142 (904)
.|+.+.|...|++.. +.+..+|..+...|.+.|++++|+..|.++... .|+
T Consensus 134 ~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~ 210 (857)
T PLN03077 134 FGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210 (857)
T ss_pred CCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHH
Confidence 888888888887754 335667888888888888888888888887642 343
Q ss_pred ----------hhhHHHHHHHHHHHcCChHHHHHHHH--------HHHhhHHHHHHcCCHHHHHHHHhhcCCC--cchhhH
Q psy17306 143 ----------LYCVRSDLGNLLKALGRLDEAKDLYC--------VRSDLGNLLKALGRLDEAKNLHTENIKP--VTMKVQ 202 (904)
Q Consensus 143 ----------~~~~~~~la~~~~~~~~~~~A~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 202 (904)
+...+..+...|.+.|++++|..+|+ .+..+...|.+.|++++|+.++.+.... .+....
T Consensus 211 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~t 290 (857)
T PLN03077 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290 (857)
T ss_pred HHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence 22345566677777888888888773 5667777788888888888888764321 111111
Q ss_pred HHHHHhhcCCCcchHHHhhHHHHHhhcC-chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy17306 203 NAIVCNYGGRKPTTLESAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 281 (904)
Q Consensus 203 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (904)
...+..-.........+.+.+....+.. +.+..++..+...|.+.|++++|...|++... .+..+|..+...|.+.
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKN 367 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhC
Confidence 1111111112223333333333333221 22466777888888888888888888887532 3456788888888888
Q ss_pred CCHHHHHHHHHHHHhh
Q psy17306 282 GDMEQAVQAYVTALQY 297 (904)
Q Consensus 282 g~~~~A~~~~~~al~~ 297 (904)
|++++|++.|++..+.
T Consensus 368 g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 368 GLPDKALETYALMEQD 383 (857)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8888888888877554
No 44
>KOG4162|consensus
Probab=99.90 E-value=2.8e-20 Score=195.47 Aligned_cols=139 Identities=28% Similarity=0.313 Sum_probs=111.7
Q ss_pred HHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q psy17306 541 YVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 620 (904)
Q Consensus 541 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (904)
.+|...+..+...+..++|..++.+ +-..+|..+..|+..|.++...|++.+|.+.|..++.++|+++.
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~E-----------a~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~ 719 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLE-----------ASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP 719 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHH-----------HHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH
Confidence 4557777888888888888888887 77888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH
Q psy17306 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699 (904)
Q Consensus 621 a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 699 (904)
+...+|.++...|+..-|.. ...+..+++.+|.++++|+.+|.++.++|+.++|.++|+-|+++++.+|.
T Consensus 720 s~~Ala~~lle~G~~~la~~---------~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEK---------RSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHhCCcchHHH---------HHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 88888888888886554444 00455666788888888888888888888888888888888888776653
No 45
>KOG0624|consensus
Probab=99.90 E-value=1.6e-20 Score=177.77 Aligned_cols=211 Identities=17% Similarity=0.174 Sum_probs=190.8
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGN 84 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 84 (904)
|.-..-.+.+|..++..|++..|+..|..+++.+|++..+++..|.+|+..|+-.-|+.-+.+++++.|+...+...+|.
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 34456689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCH---HHHH------------HHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHH
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFI---DGYI------------NLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSD 149 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 149 (904)
+++++|.+++|...|.+++..+|++. ++.. .....+...|+...|+......+++.|-+...+..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 99999999999999999999999652 2222 22334556799999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhc
Q psy17306 150 LGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ 229 (904)
Q Consensus 150 la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 229 (904)
.+.+|...|....|+..+ ..+.++
T Consensus 195 Rakc~i~~~e~k~AI~Dl--------------------------------------------------------k~askL 218 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDL--------------------------------------------------------KQASKL 218 (504)
T ss_pred HHHHHHhcCcHHHHHHHH--------------------------------------------------------HHHHhc
Confidence 999999999999998887 566777
Q ss_pred CchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHH
Q psy17306 230 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 271 (904)
Q Consensus 230 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 271 (904)
..++.+.++.++.+++..|+.+.++...+..++++|++-..+
T Consensus 219 s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 219 SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF 260 (504)
T ss_pred cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence 888899999999999999999999999999999999976543
No 46
>KOG1127|consensus
Probab=99.89 E-value=6.8e-19 Score=188.97 Aligned_cols=549 Identities=14% Similarity=0.156 Sum_probs=351.3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc--cHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL--LAEAYSNL 82 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 82 (904)
+.++.++-.+|.+|....+...|..+|+++.+.||.++++.-..+..|.+..+++.|....-.+-+..|- ....|..+
T Consensus 489 ~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~r 568 (1238)
T KOG1127|consen 489 VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQR 568 (1238)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhc
Confidence 3456666667777766667777777777777777777777777777777777777777665555555543 23456668
Q ss_pred HHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHH
Q psy17306 83 GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDE 162 (904)
Q Consensus 83 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 162 (904)
|..|...++...|+..|+.+++.+|.+..+|..+|.+|...|++..|++.|.++..++|.+.-..+..+.+.+..|.|.+
T Consensus 569 G~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH------------------HHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHH-----HH--------HhhcC
Q psy17306 163 AKDLY------------------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNA-----IV--------CNYGG 211 (904)
Q Consensus 163 A~~~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~--------~~~~~ 211 (904)
|+..+ +....++..+...|-..+|...+++.+.......... .. ..+..
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q 728 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQ 728 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHH
Confidence 99888 2333444445555656666666665443211110000 00 00000
Q ss_pred CCcc-------------------------hHHHhhHHHHHhhcCchhHHHHHHHHHHHHH--------hCCHHHHHHHHH
Q psy17306 212 RKPT-------------------------TLESAHFSTLAIKQNPLLAEAYSNLGNVYKE--------RGQLQEALENYR 258 (904)
Q Consensus 212 ~~~~-------------------------~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~--------~g~~~~A~~~~~ 258 (904)
...+ ..-+.+++-..+..- ..+..|+++|..|++ ..+...|+.++.
T Consensus 729 ~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~-~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~K 807 (1238)
T KOG1127|consen 729 EEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA-IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCK 807 (1238)
T ss_pred hcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh-hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHH
Confidence 0000 000111111111111 125678888888776 223347888899
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccch
Q psy17306 259 HAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGL 338 (904)
Q Consensus 259 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 338 (904)
+++++..++...|..||.+ ...|++.-|..+|-+.+...|.. ...|
T Consensus 808 kaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~--~~~W------------------------------- 853 (1238)
T KOG1127|consen 808 KAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTC--HCQW------------------------------- 853 (1238)
T ss_pred HHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccc--hhhe-------------------------------
Confidence 9999888888889888887 55588888888888888888877 2333
Q ss_pred hhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHH
Q psy17306 339 ASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKI 418 (904)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (904)
.++|.+.-...+ +
T Consensus 854 --------------------------------------------~NlgvL~l~n~d-----------------------~ 866 (1238)
T KOG1127|consen 854 --------------------------------------------LNLGVLVLENQD-----------------------F 866 (1238)
T ss_pred --------------------------------------------eccceeEEeccc-----------------------H
Confidence 333333322211 5
Q ss_pred hhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHH
Q psy17306 419 DFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLD 497 (904)
Q Consensus 419 ~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (904)
+.|-..|.++..+ |.+... + +|.++ ...
T Consensus 867 E~A~~af~~~qSLdP~nl~~-----------W-------lG~Al---------------------------------i~e 895 (1238)
T KOG1127|consen 867 EHAEPAFSSVQSLDPLNLVQ-----------W-------LGEAL---------------------------------IPE 895 (1238)
T ss_pred HHhhHHHHhhhhcCchhhHH-----------H-------HHHHH---------------------------------hHH
Confidence 5566666666666 544432 0 00000 000
Q ss_pred HHHHHHHHhcChhHHHHHHHhccccccc---CCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHH
Q psy17306 498 YLNELWKARNSPNKFKAYLLDSGKSWRT---NPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFS 574 (904)
Q Consensus 498 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~ 574 (904)
. .++....+..+.-.... ...-+... -|..-.......|++++-+...++. ..|.-..
T Consensus 896 a----------vG~ii~~~~lfaHs~el~~~~gka~~f~--------Yw~c~te~h~~Ng~~e~~I~t~~ki-~sAs~al 956 (1238)
T KOG1127|consen 896 A----------VGRIIERLILFAHSDELCSKEGKAKKFQ--------YWLCATEIHLQNGNIEESINTARKI-SSASLAL 956 (1238)
T ss_pred H----------HHHHHHHHHHHHhhHHhhccccccchhh--------HHHHHHHHHHhccchHHHHHHhhhh-hhhHHHH
Confidence 0 01111111111110000 11111111 2244455566677777777666652 2223333
Q ss_pred HHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 648 (904)
Q Consensus 575 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 648 (904)
.+.+..+|+...++...|.....++.+..|.+.+.+++.+ ...+..+--+.|.+++..|.++.|...+...
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~--- 1033 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKE--- 1033 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhccc---
Confidence 4467789999999999999999999999999999998865 2334457788999999999999887732210
Q ss_pred ChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 649 NPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF---LDAYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 649 ~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
....+.-. .......+-.++++++.+.|++|+.+..+. +......+.+....+..+.|...+-++.
T Consensus 1034 ---------~~evdEdi--~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1034 ---------WMEVDEDI--RGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred ---------chhHHHHH--hhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 00000001 111222266899999999999999995443 4566777788888889999999888888
Q ss_pred cccCChhhHHHHHH
Q psy17306 726 YFMITDEDIDVILE 739 (904)
Q Consensus 726 ~~~~~~~~~~~~l~ 739 (904)
...+.+......+.
T Consensus 1103 ~ls~~~~~sll~L~ 1116 (1238)
T KOG1127|consen 1103 SLSKVQASSLLPLP 1116 (1238)
T ss_pred HhCccchhhHHHHH
Confidence 77665444444433
No 47
>KOG4162|consensus
Probab=99.88 E-value=5.7e-19 Score=185.77 Aligned_cols=436 Identities=19% Similarity=0.170 Sum_probs=312.4
Q ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CChhhHHHHHH
Q psy17306 74 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN--PDLYCVRSDLG 151 (904)
Q Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 151 (904)
+++..|-.+...+...|++..+.+.|++++...-...+.|+.++.++...|.-..|+..++..+... |+++..+...+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 5677888899999999999999999999998877788899999999999999999999999999988 77776666665
Q ss_pred HHH-HHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcC----------CCcchHHHh
Q psy17306 152 NLL-KALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG----------RKPTTLESA 220 (904)
Q Consensus 152 ~~~-~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~a~ 220 (904)
.++ .+.+..++++.+. .+|+..+........+.....+...+.. +.....+++
T Consensus 401 klc~e~l~~~eegldYA----------------~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ksl 464 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYA----------------QKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSL 464 (799)
T ss_pred HHHHhchhhhhhHHHHH----------------HHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHH
Confidence 554 4567788888777 3333333222222222222222222211 112234667
Q ss_pred hHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17306 221 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299 (904)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 299 (904)
..++++++.+|.++.+.+.++.-|..+++.+.|..+.++++++ ..+++.+|..++.++...+++.+|+...+.++...|
T Consensus 465 qale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 465 QALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 8889999999999999999999999999999999999999999 567789999999999999999999999999999999
Q ss_pred CcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHH
Q psy17306 300 LLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMT 379 (904)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (904)
++..-- + +.++.
T Consensus 545 ~N~~l~--------------------------------------~---------------------------~~~~i--- 556 (799)
T KOG4162|consen 545 DNHVLM--------------------------------------D---------------------------GKIHI--- 556 (799)
T ss_pred hhhhhc--------------------------------------h---------------------------hhhhh---
Confidence 871100 0 00000
Q ss_pred HHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccc
Q psy17306 380 DLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEG 459 (904)
Q Consensus 380 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~ 459 (904)
....+..++++......+.
T Consensus 557 --------------------------------~~~~~~~e~~l~t~~~~L~----------------------------- 575 (799)
T KOG4162|consen 557 --------------------------------ELTFNDREEALDTCIHKLA----------------------------- 575 (799)
T ss_pred --------------------------------hhhcccHHHHHHHHHHHHH-----------------------------
Confidence 0000112222222222222
Q ss_pred cccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHH
Q psy17306 460 AFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARAT 539 (904)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 539 (904)
+|......... ++ -
T Consensus 576 ------------------------------------------~we~~~~~q~~---~~---------------------~ 589 (799)
T KOG4162|consen 576 ------------------------------------------LWEAEYGVQQT---LD---------------------E 589 (799)
T ss_pred ------------------------------------------HHHhhhhHhhh---hh---------------------h
Confidence 22211100000 00 0
Q ss_pred HHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHH----------HHHhCCch-----HHHHHHHHHHHHHcCCHHHH
Q psy17306 540 KYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTL----------AIKQNPLL-----AEAYSNLGNVYKERGQLQEA 604 (904)
Q Consensus 540 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~----------al~~~p~~-----~~~~~~lg~~~~~~g~~~~A 604 (904)
+......+......++..+|+..++.....+..-... .....|.. ...|...|..+...++.++|
T Consensus 590 g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a 669 (799)
T KOG4162|consen 590 GKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEA 669 (799)
T ss_pred hhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHH
Confidence 0001122222222233333333333322211100000 01112221 34788899999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHH
Q psy17306 605 LENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAI 684 (904)
Q Consensus 605 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~ 684 (904)
..++.++-.+.|..+..|+..|.++...|++.+|.+ .|..++.++|+++.+...+|.++...|+...|.
T Consensus 670 ~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~-----------af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~ 738 (799)
T KOG4162|consen 670 RSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKE-----------AFLVALALDPDHVPSMTALAELLLELGSPRLAE 738 (799)
T ss_pred HHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHH-----------HHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHH
Confidence 999999999999999999999999999999999999 888888899999999999999999999988888
Q ss_pred H--HHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCCh
Q psy17306 685 H--HFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITD 731 (904)
Q Consensus 685 ~--~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 731 (904)
. .+..++++||.++++|+.+|.++..+|+.++|.++|..++....++
T Consensus 739 ~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 739 KRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 8 9999999999999999999999999999999999999998876543
No 48
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.88 E-value=1.2e-17 Score=195.36 Aligned_cols=253 Identities=14% Similarity=0.103 Sum_probs=174.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWRQETN--NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE 88 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 88 (904)
++..-..+.+.|++++|+++|+.+...+.- +...+..+...+...|..++|..+++.... | +..+|..+-.++..
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k 449 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCAS 449 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHh
Confidence 344445566889999999999998776532 334444556677788999999999887654 4 46788888888999
Q ss_pred hCcHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHcCChHHHHHH
Q psy17306 89 RGQLQEALENYRHAVRLKP-DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP-DLYCVRSDLGNLLKALGRLDEAKDL 166 (904)
Q Consensus 89 ~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~ 166 (904)
.|++++|...|.++.+... .+...+..+..+|.+.|+.++|.+.|+++.+... .+...|..+...|.+.|++++|..+
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~l 529 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 9999999999999888653 3467888999999999999999999999987643 2577888999999999999999888
Q ss_pred HH------------HHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhH
Q psy17306 167 YC------------VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLA 234 (904)
Q Consensus 167 ~~------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (904)
|. .+..+...+.+.|++++|..++.+... ......|+ .
T Consensus 530 f~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~-----------------------------~~~gi~PD-~ 579 (1060)
T PLN03218 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA-----------------------------ETHPIDPD-H 579 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------------------------hcCCCCCc-H
Confidence 82 344455555555666666555542110 00112232 3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 235 EAYSNLGNVYKERGQLQEALENYRHAVRLK-PDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296 (904)
Q Consensus 235 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 296 (904)
..+..+...|.+.|++++|...|+.+.+.+ +.+...|..+...|.+.|++++|+..|.++.+
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455555556666666666666666655543 33445566666666666666666666665554
No 49
>KOG1174|consensus
Probab=99.87 E-value=1.7e-18 Score=168.31 Aligned_cols=384 Identities=16% Similarity=0.102 Sum_probs=285.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC---------------
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQN--------------- 72 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------- 72 (904)
...-...+..+...|+-+.|+.......... ..+.+...++..+...++-.++.-.+...+...
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 4455677888888899999888766553221 235566666666666555444444444433322
Q ss_pred ----------------cccHHH---HHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17306 73 ----------------PLLAEA---YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 133 (904)
Q Consensus 73 ----------------p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 133 (904)
|..++. ....+.++....-+..+..++-.-...-|++...+..+|.|++..|++++|+..|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 222221 1233444444444555556666666677888888888999999999999999999
Q ss_pred HHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCC
Q psy17306 134 VTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRK 213 (904)
Q Consensus 134 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (904)
+++..++|.+....-..|.++...|++++-..+.
T Consensus 256 e~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~---------------------------------------------- 289 (564)
T KOG1174|consen 256 SSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALM---------------------------------------------- 289 (564)
T ss_pred HHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHH----------------------------------------------
Confidence 9998889988888888888888888887655444
Q ss_pred cchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17306 214 PTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293 (904)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (904)
...+........-|+--|.+.+..+++..|+.+-++++..+|.+..++...|.++..+|+.++|+-.|+.
T Consensus 290 ----------~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 290 ----------DYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred ----------HHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHH
Confidence 2444455455667777888888889999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcc
Q psy17306 294 ALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGS 373 (904)
Q Consensus 294 al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (904)
+..+.|..-
T Consensus 360 Aq~Lap~rL----------------------------------------------------------------------- 368 (564)
T KOG1174|consen 360 AQMLAPYRL----------------------------------------------------------------------- 368 (564)
T ss_pred HHhcchhhH-----------------------------------------------------------------------
Confidence 988887550
Q ss_pred hhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccc
Q psy17306 374 VHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLS 453 (904)
Q Consensus 374 ~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~ 453 (904)
T Consensus 369 -------------------------------------------------------------------------------- 368 (564)
T KOG1174|consen 369 -------------------------------------------------------------------------------- 368 (564)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchH
Q psy17306 454 LHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYV 533 (904)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 533 (904)
T Consensus 369 -------------------------------------------------------------------------------- 368 (564)
T KOG1174|consen 369 -------------------------------------------------------------------------------- 368 (564)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHH-HHH-HHcCCHHHHHHHHHHH
Q psy17306 534 AAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLG-NVY-KERGQLQEALENYRHA 611 (904)
Q Consensus 534 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg-~~~-~~~g~~~~A~~~~~~a 611 (904)
.+|..+-..|...|++.+|.-.... ++..-|.++.++..+| .++ ..-.--++|.+.++++
T Consensus 369 -------~~Y~GL~hsYLA~~~~kEA~~~An~-----------~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 369 -------EIYRGLFHSYLAQKRFKEANALANW-----------TIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred -------HHHHHHHHHHHhhchHHHHHHHHHH-----------HHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 1223444556677888888888888 8888888888888886 333 3444568899999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy17306 612 VRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691 (904)
Q Consensus 612 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 691 (904)
+.++|....+-..++.++...|++.+++..+++.|. ..|+ ...+..||.++.....+.+|+++|..||
T Consensus 431 L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~-----------~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 431 LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI-----------IFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh-----------hccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999995555554 4443 3578889999999999999999999999
Q ss_pred hcCcCcHHHHHHHHHHHH
Q psy17306 692 SLDPNFLDAYINLGNVLK 709 (904)
Q Consensus 692 ~~~p~~~~a~~~la~~~~ 709 (904)
.+||++..+..++-.+-.
T Consensus 499 r~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 499 RQDPKSKRTLRGLRLLEK 516 (564)
T ss_pred hcCccchHHHHHHHHHHh
Confidence 999999888776655443
No 50
>KOG1174|consensus
Probab=99.86 E-value=1.2e-17 Score=162.47 Aligned_cols=200 Identities=17% Similarity=0.116 Sum_probs=169.1
Q ss_pred HHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHH
Q psy17306 511 KFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSN 590 (904)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~ 590 (904)
++..++.-..++++.+|.+.+.. ...|.++...++.++|+-.|+. ++...|..-+.|-.
T Consensus 315 ~~~rAL~~~eK~I~~~~r~~~al----------ilKG~lL~~~~R~~~A~IaFR~-----------Aq~Lap~rL~~Y~G 373 (564)
T KOG1174|consen 315 KFERALNFVEKCIDSEPRNHEAL----------ILKGRLLIALERHTQAVIAFRT-----------AQMLAPYRLEIYRG 373 (564)
T ss_pred hHHHHHHHHHHHhccCcccchHH----------HhccHHHHhccchHHHHHHHHH-----------HHhcchhhHHHHHH
Confidence 34444455556666677666555 8899999999999999999999 99999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH-HHHHHc-CCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHH
Q psy17306 591 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLA-AALVAA-GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWS 668 (904)
Q Consensus 591 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg-~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~ 668 (904)
|-.+|...|.+.+|...-+.++..-|.++.++..+| .++... .--++|.+ .+++++.++|....+..
T Consensus 374 L~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKk-----------f~ek~L~~~P~Y~~AV~ 442 (564)
T KOG1174|consen 374 LFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKK-----------FAEKSLKINPIYTPAVN 442 (564)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHH-----------HHHhhhccCCccHHHHH
Confidence 999999999999999999999999999999998887 555443 34577888 66677778888889999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHH
Q psy17306 669 NLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEA 743 (904)
Q Consensus 669 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 743 (904)
.++.++...|.++.++..+++.|...|+ ...+..||.++...+.+.+|.+.|..++.++|++......+.+.++
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEK 516 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHh
Confidence 9999999999999999999999999885 4788999999999999999999999999999998877666555553
No 51
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.86 E-value=5.4e-18 Score=197.48 Aligned_cols=444 Identities=13% Similarity=0.076 Sum_probs=338.4
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Q psy17306 44 VLLLLSSIHFQCRKLDKSAHFSTLAIKQNP--LLAEAYSNLGNVYKERGQLQEALENYRHAVRL--KPDFIDGYINLAAA 119 (904)
Q Consensus 44 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~ 119 (904)
.|..+...+...|++++|+..|+.+....+ .+..++..+..++...++++.|...+..+... .| +..++..+..+
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~ 167 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLM 167 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 566777788899999999999999876532 35778888999999999999999999988875 35 47788899999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHH------------HhhHHHHHHcCCHHHHH
Q psy17306 120 LVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR------------SDLGNLLKALGRLDEAK 187 (904)
Q Consensus 120 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~------------~~l~~~~~~~g~~~~A~ 187 (904)
|.+.|++++|.+.|+++.+ | +...|..+...|.+.|++++|+.+|... ..+...+...|....+.
T Consensus 168 y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 9999999999999998754 3 4667889999999999999999988322 22223333444444444
Q ss_pred HHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcC-chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q psy17306 188 NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 266 (904)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 266 (904)
.++. ...+.. ..+..++..+...|.+.|++++|...|++.. +.
T Consensus 245 ~l~~---------------------------------~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~ 288 (697)
T PLN03081 245 QLHC---------------------------------CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EK 288 (697)
T ss_pred HHHH---------------------------------HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CC
Confidence 4332 222211 2246678889999999999999999998763 45
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhh
Q psy17306 267 FIDGYINLAAALVAAGDMEQAVQAYVTALQYN--PLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIES 344 (904)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 344 (904)
+..+|..+...|.+.|++++|+..|++..+.. |+.
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~------------------------------------------- 325 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ------------------------------------------- 325 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-------------------------------------------
Confidence 68899999999999999999999999987643 322
Q ss_pred hhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHH
Q psy17306 345 ISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTED 424 (904)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 424 (904)
..+..+..++..+|. ++.|.+.
T Consensus 326 ----------------------------~t~~~ll~a~~~~g~------------------------------~~~a~~i 347 (697)
T PLN03081 326 ----------------------------FTFSIMIRIFSRLAL------------------------------LEHAKQA 347 (697)
T ss_pred ----------------------------HHHHHHHHHHHhccc------------------------------hHHHHHH
Confidence 122222333333333 5566666
Q ss_pred HHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHH
Q psy17306 425 FRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWK 504 (904)
Q Consensus 425 ~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 504 (904)
+..+++..-
T Consensus 348 ~~~m~~~g~----------------------------------------------------------------------- 356 (697)
T PLN03081 348 HAGLIRTGF----------------------------------------------------------------------- 356 (697)
T ss_pred HHHHHHhCC-----------------------------------------------------------------------
Confidence 666554400
Q ss_pred HhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCch
Q psy17306 505 ARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLL 584 (904)
Q Consensus 505 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~ 584 (904)
+.+. .+++.+...|.+.|++++|...|++ ..+ .+
T Consensus 357 ----------------------~~d~----------~~~~~Li~~y~k~G~~~~A~~vf~~-----------m~~---~d 390 (697)
T PLN03081 357 ----------------------PLDI----------VANTALVDLYSKWGRMEDARNVFDR-----------MPR---KN 390 (697)
T ss_pred ----------------------CCCe----------eehHHHHHHHHHCCCHHHHHHHHHh-----------CCC---CC
Confidence 0011 1247788899999999999999998 432 35
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcc
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRL--KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD 662 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~ 662 (904)
..+|..+...|...|+.++|++.|+++.+. .|+ ..++..+...+...|..++|.++|+.+.+. ....|+
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~--------~g~~p~ 461 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSEN--------HRIKPR 461 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHh--------cCCCCC
Confidence 678999999999999999999999999875 455 677889999999999999999977755431 123343
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHH
Q psy17306 663 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCE 742 (904)
Q Consensus 663 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 742 (904)
...|..+..++.+.|++++|.+.+++. ...| +..+|..+...+...|+.+.|...+++..+..|++......+..++
T Consensus 462 -~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y 538 (697)
T PLN03081 462 -AMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLY 538 (697)
T ss_pred -ccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHH
Confidence 357889999999999999999999875 3344 4667999999999999999999999999999988877888888899
Q ss_pred HHHHHHHHHHHHcCC
Q psy17306 743 AKTEELNKKFEQLGE 757 (904)
Q Consensus 743 ~~~~~~~~~~~~l~~ 757 (904)
.+.++++++.+-+..
T Consensus 539 ~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 539 NSSGRQAEAAKVVET 553 (697)
T ss_pred HhCCCHHHHHHHHHH
Confidence 888888888665443
No 52
>KOG0495|consensus
Probab=99.86 E-value=1e-17 Score=172.19 Aligned_cols=401 Identities=16% Similarity=0.098 Sum_probs=285.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQET---NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGN 84 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 84 (904)
-+.|+..|..+-..|-.-.+..+...++...- +.-..|..-+..+...+.++-|..+|..+++..|.....|...+.
T Consensus 479 rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~ 558 (913)
T KOG0495|consen 479 RDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAM 558 (913)
T ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 46788889999888998888888888877543 345678888888889999999999999999999998889988888
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHH
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK 164 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 164 (904)
.-..-|..++-...+++++...|.....|...+..++..|+...|...+.++++.+|++.++|..-..+.....+++.|.
T Consensus 559 ~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR 638 (913)
T KOG0495|consen 559 FEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERAR 638 (913)
T ss_pred HHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHH
Confidence 88888999999999999999999988899999999999999999999999999999999999998889999999999998
Q ss_pred HHH----------HHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhH
Q psy17306 165 DLY----------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLA 234 (904)
Q Consensus 165 ~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (904)
.+| ++++..+.....+++.++|+.+++ .+++..|+..
T Consensus 639 ~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllE---------------------------------e~lk~fp~f~ 685 (913)
T KOG0495|consen 639 DLLAKARSISGTERVWMKSANLERYLDNVEEALRLLE---------------------------------EALKSFPDFH 685 (913)
T ss_pred HHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHH---------------------------------HHHHhCCchH
Confidence 888 122222333333333333333332 3444444444
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccc
Q psy17306 235 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVL 314 (904)
Q Consensus 235 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 314 (904)
..|..+|.++.+.++.+.|...|...++..|..+..|..++.+-.+.|..-.|...++++.-.+|++
T Consensus 686 Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~------------- 752 (913)
T KOG0495|consen 686 KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKN------------- 752 (913)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc-------------
Confidence 4444444444444444444444444444444444444444444444444444444444444444443
Q ss_pred cHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCc
Q psy17306 315 DFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGK 394 (904)
Q Consensus 315 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 394 (904)
T Consensus 753 -------------------------------------------------------------------------------- 752 (913)
T KOG0495|consen 753 -------------------------------------------------------------------------------- 752 (913)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcc
Q psy17306 395 ILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKV 474 (904)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (904)
T Consensus 753 -------------------------------------------------------------------------------- 752 (913)
T KOG0495|consen 753 -------------------------------------------------------------------------------- 752 (913)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcC
Q psy17306 475 VGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGG 554 (904)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 554 (904)
+..+ ......-.+.|
T Consensus 753 -------------------------------------------------------~~lw----------le~Ir~ElR~g 767 (913)
T KOG0495|consen 753 -------------------------------------------------------ALLW----------LESIRMELRAG 767 (913)
T ss_pred -------------------------------------------------------chhH----------HHHHHHHHHcC
Confidence 3333 44444555677
Q ss_pred ChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC
Q psy17306 555 SIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634 (904)
Q Consensus 555 ~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~ 634 (904)
..+.|.....+ +++..|++...|..--...-.-++-..+ ..|++....++..+...|.++....+
T Consensus 768 n~~~a~~lmak-----------ALQecp~sg~LWaEaI~le~~~~rkTks----~DALkkce~dphVllaia~lfw~e~k 832 (913)
T KOG0495|consen 768 NKEQAELLMAK-----------ALQECPSSGLLWAEAIWLEPRPQRKTKS----IDALKKCEHDPHVLLAIAKLFWSEKK 832 (913)
T ss_pred CHHHHHHHHHH-----------HHHhCCccchhHHHHHHhccCcccchHH----HHHHHhccCCchhHHHHHHHHHHHHH
Confidence 88888888888 8888888877777665555554553333 44455556677888888888888888
Q ss_pred HHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHH
Q psy17306 635 MEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLG 705 (904)
Q Consensus 635 ~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 705 (904)
+++|.+ .|.++++.+|++.++|...-..+...|.-+.-.+.|.+.....|.+...|....
T Consensus 833 ~~kar~-----------Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 833 IEKARE-----------WFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHH-----------HHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 888888 777777888888888888888888888888888888888888888877765543
No 53
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.85 E-value=9.6e-17 Score=187.93 Aligned_cols=208 Identities=11% Similarity=0.076 Sum_probs=145.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Q psy17306 27 AERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP--LLAEAYSNLGNVYKERGQLQEALENYRHAVR 104 (904)
Q Consensus 27 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 104 (904)
++..++..+...++ ...+..+-..+.+.|++++|+.+|+.+...+. .+...+..+...+...|..++|...|+....
T Consensus 356 ~~~~~~~~~~~~~~-~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~ 434 (1060)
T PLN03218 356 SLAAYNGGVSGKRK-SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN 434 (1060)
T ss_pred hHHHhccccCCCCC-chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 34444444433333 33444444556688999999999999887643 3444555666778888999999999887654
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCH
Q psy17306 105 LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP-DLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRL 183 (904)
Q Consensus 105 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~ 183 (904)
| +...|..+-.++...|++++|...+.++.+... .+...+..+...|.+.|+.++|..+|
T Consensus 435 --p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf---------------- 495 (1060)
T PLN03218 435 --P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF---------------- 495 (1060)
T ss_pred --C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHH----------------
Confidence 4 467888888899999999999999999987643 34677888888999999998888887
Q ss_pred HHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhc--CchhHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy17306 184 DEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEALENYRHAV 261 (904)
Q Consensus 184 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 261 (904)
...... .| +...|..+...|.+.|++++|+..|..+.
T Consensus 496 ----------------------------------------~eM~~~Gv~P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~ 534 (1060)
T PLN03218 496 ----------------------------------------HEMVNAGVEA-NVHTFGALIDGCARAGQVAKAFGAYGIMR 534 (1060)
T ss_pred ----------------------------------------HHHHHcCCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 122221 22 35666677777777777777777777765
Q ss_pred hhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 262 RLK--PDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296 (904)
Q Consensus 262 ~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 296 (904)
... |+ ..+|..+...+.+.|++++|.+.|.++..
T Consensus 535 ~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 535 SKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred HcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 432 33 55677777777777777777777777654
No 54
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.85 E-value=4.3e-21 Score=197.30 Aligned_cols=162 Identities=23% Similarity=0.267 Sum_probs=118.2
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 621 (904)
.....++...++++++...+.+ +.... +.++..|..+|.++...|++++|+..|+++++.+|+++.+
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~ 182 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEK-----------LEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDA 182 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHH-----------HHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHH
T ss_pred hHHHHHHHHHhHHHHHHHHHHH-----------HHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 4445567788999999999888 55544 5788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHH
Q psy17306 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAY 701 (904)
Q Consensus 622 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 701 (904)
+..+++++...|+++++.+ .+.......|+++..|..+|.++..+|++++|+.+|++++..+|+++.++
T Consensus 183 ~~~l~~~li~~~~~~~~~~-----------~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 183 RNALAWLLIDMGDYDEARE-----------ALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp HHHHHHHHCTTCHHHHHHH-----------HHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred HHHHHHHHHHCCChHHHHH-----------HHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccc
Confidence 9999999999999999888 44444444577778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchhHHHHHHHHhhcc
Q psy17306 702 INLGNVLKEARIFDRANTLFYVSSYF 727 (904)
Q Consensus 702 ~~la~~~~~~g~~~~A~~~~~~a~~~ 727 (904)
.++|.++...|+.++|..++++++..
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999988753
No 55
>KOG0385|consensus
Probab=99.84 E-value=4.2e-21 Score=200.66 Aligned_cols=140 Identities=71% Similarity=1.100 Sum_probs=126.3
Q ss_pred cccCChhhHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccCCCcccccccCchhhhhhccCCCccccCCchhhhhhhcc
Q psy17306 726 YFMITDEDIDVILERCEAKTEELNKKFEQLGESSLRDFTLDAPTQSVYKFEGEDYREKQKIVPIGHWIEPPKRERKANYA 805 (904)
Q Consensus 726 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~w~~~~~~e~~~~~~ 805 (904)
++..++ ++..++.+...++.+.+.+...++.++++.|.+ .++|.|.|+||+.++... .|++|+++||+.+
T Consensus 654 es~~~d-Did~il~~~e~kt~e~~~~~~~~~~~~~~~~~~----~~~y~~eG~d~~ek~~~~---~wiep~krerk~~-- 723 (971)
T KOG0385|consen 654 ESTISD-DIDRILERGEEKTAELNAKEAKLGESDLRNFGM----ISVYNFEGEDYKEKQSLF---KWIEPPKRERKAN-- 723 (971)
T ss_pred ccccch-hHHHHHHhhhhhccCcchHHHhhCcchhhhcCc----ceeeccCCcchhhhhhhh---hhcCCchhhhhhh--
Confidence 334444 999999999999999999999999999999875 589999999999876543 3999999999876
Q ss_pred hhHHHHHHHhcCCCCCCCCCCCCCCCCccccccCCchhHhHHHHHHHHHHhhcCccCCCCCCCCcchHHHHHHHHhhhhc
Q psy17306 806 VDAYFKEALRTSEPKAPKAPRPPKQPIVQDFQFFPPRLFEILDQEIYYFRKTVGYKVPKNPELGSDATKAQKEEQKKIDE 885 (904)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 885 (904)
|.||+++++.+.+ ||++|+++||||||++|+||+|+|+.||+|++ ||.+|++
T Consensus 724 -d~y~r~~l~~g~~-------~P~~~~~~d~qf~p~~L~el~~kei~~~~k~~--------------------e~~kin~ 775 (971)
T KOG0385|consen 724 -DAYFREALRVGEP-------PPKQPEVQDFQFFPKRLFELLEKEIEYYRKTI--------------------EQKKINN 775 (971)
T ss_pred -hhHHHHHHhcCCC-------CCCCccccccccCcHHHHHHHHHHHHHHHHHH--------------------HHHhccC
Confidence 8999999998544 79999999999999999999999999999997 8999999
Q ss_pred cCCCCHHHHHHHHHHhhc
Q psy17306 886 SEPLTEEELAEKEELLTQ 903 (904)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~ 903 (904)
++|||.||+++|++|++|
T Consensus 776 ~~~lt~ee~~~k~~ll~~ 793 (971)
T KOG0385|consen 776 AEPLTQEEEEEKEELLSQ 793 (971)
T ss_pred CCCCCcHHHhhhhhhhhc
Confidence 999999999999999986
No 56
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.83 E-value=1.3e-17 Score=180.25 Aligned_cols=140 Identities=16% Similarity=0.031 Sum_probs=115.6
Q ss_pred HHHhCC----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCh
Q psy17306 577 AIKQNP----LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY--INLAAALVAAGDMEQAVQAYVTALQYNP 650 (904)
Q Consensus 577 al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~--~~lg~~~~~~g~~~~A~~~~~~al~~~~ 650 (904)
+....| +++..+..+|..+...|++++|.+.++++++..|++.... ..........++.+.+++
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~---------- 320 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEK---------- 320 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHH----------
Confidence 444455 5788999999999999999999999999999999987532 223333344577888888
Q ss_pred hhHHHhhhcCcchH--HHHHHHHHHHHhCCCHHHHHHHHH--HHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhc
Q psy17306 651 SCYLKAIETRPDFA--VAWSNLGCVFNAQGEIWLAIHHFE--KAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSY 726 (904)
Q Consensus 651 ~~~~~~l~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~--~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 726 (904)
.++++++.+|+++ ..+..+|+++.+.|++++|.++|+ ++++.+|+... +..+|.++.+.|+.++|.++|++++.
T Consensus 321 -~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 321 -LIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred -HHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777778899999 889999999999999999999999 68888897766 55999999999999999999999866
Q ss_pred cc
Q psy17306 727 FM 728 (904)
Q Consensus 727 ~~ 728 (904)
..
T Consensus 399 ~~ 400 (409)
T TIGR00540 399 LM 400 (409)
T ss_pred HH
Confidence 43
No 57
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.83 E-value=3e-18 Score=154.81 Aligned_cols=212 Identities=19% Similarity=0.152 Sum_probs=189.4
Q ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHH
Q psy17306 3 DIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNL 82 (904)
Q Consensus 3 ~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 82 (904)
+....+.+.+.+|..|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++..++.+.
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY 109 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY 109 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCcHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCCh
Q psy17306 83 GNVYKERGQLQEALENYRHAVRL--KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRL 160 (904)
Q Consensus 83 a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 160 (904)
|..++.+|++++|...|++++.. .|..+.++.++|.|..+.|+.+.|...|+++++++|+++.....++..++..|++
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDY 189 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccc
Confidence 99999999999999999999975 3556789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHH
Q psy17306 161 DEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNL 240 (904)
Q Consensus 161 ~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 240 (904)
..|...+ ++.....+-.+..+...
T Consensus 190 ~~Ar~~~--------------------------------------------------------~~~~~~~~~~A~sL~L~ 213 (250)
T COG3063 190 APARLYL--------------------------------------------------------ERYQQRGGAQAESLLLG 213 (250)
T ss_pred hHHHHHH--------------------------------------------------------HHHHhcccccHHHHHHH
Confidence 9998877 33444444556777777
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCCHHH
Q psy17306 241 GNVYKERGQLQEALENYRHAVRLKPDFIDG 270 (904)
Q Consensus 241 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 270 (904)
..+-...|+-+.|-.+=.+.....|.....
T Consensus 214 iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 214 IRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 777888899888888877777788887654
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.83 E-value=2.9e-18 Score=192.38 Aligned_cols=230 Identities=14% Similarity=0.012 Sum_probs=200.5
Q ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh---------cCHHHHHHHHHHHHhcCcccHHH
Q psy17306 11 LLELAHREYQA---GDYESAERHCMQLWRQETNNTGVLLLLSSIHFQC---------RKLDKSAHFSTLAIKQNPLLAEA 78 (904)
Q Consensus 11 l~~~a~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~ 78 (904)
++..|...+.. +++++|+..|+++++.+|+++.++..+|.++... +++++|+..++++++++|+++.+
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a 340 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA 340 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence 45556554433 4578999999999999999999999999887744 34899999999999999999999
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcC
Q psy17306 79 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALG 158 (904)
Q Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 158 (904)
+..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++.++..++.++...|
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g 420 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT 420 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999998877766776777788
Q ss_pred ChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhc-CchhHHHH
Q psy17306 159 RLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ-NPLLAEAY 237 (904)
Q Consensus 159 ~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~ 237 (904)
++++|+..+ ++++.. .|+++..+
T Consensus 421 ~~eeA~~~~--------------------------------------------------------~~~l~~~~p~~~~~~ 444 (553)
T PRK12370 421 GIDDAIRLG--------------------------------------------------------DELRSQHLQDNPILL 444 (553)
T ss_pred CHHHHHHHH--------------------------------------------------------HHHHHhccccCHHHH
Confidence 888887777 466655 47788899
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 238 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 298 (904)
Q Consensus 238 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 298 (904)
..+|.++...|++++|...+.++....|....++..++..|...|+ +|...+++.++..
T Consensus 445 ~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~ 503 (553)
T PRK12370 445 SMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESE 503 (553)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHh
Confidence 9999999999999999999999998999999999999999998884 7777777766543
No 59
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.82 E-value=7.1e-17 Score=174.57 Aligned_cols=203 Identities=13% Similarity=0.025 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHH
Q psy17306 43 GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI-DGYINLAAALV 121 (904)
Q Consensus 43 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~ 121 (904)
......|.+.+..|+++.|.+.+.++.+..|+....+...|.++..+|+++.|..++.++.+..|+.. .+....+.++.
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL 164 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence 34456677888889999999999999888888788888889999999999999999999988888875 46666788999
Q ss_pred HcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhh
Q psy17306 122 AAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKV 201 (904)
Q Consensus 122 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 201 (904)
..|+++.|...+++.++..|+++.++..++.++...|++++|...+
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l---------------------------------- 210 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDII---------------------------------- 210 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHH----------------------------------
Confidence 9999999999999999999999999999999999999998888777
Q ss_pred HHHHHHhhcCCCcchHHHhhHHHHHhhc---CchhH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC----CCHHHHHH
Q psy17306 202 QNAIVCNYGGRKPTTLESAHFSTLAIKQ---NPLLA-EAYSNLGNVYKERGQLQEALENYRHAVRLKP----DFIDGYIN 273 (904)
Q Consensus 202 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~ 273 (904)
.+..+. ++... .............+..+++...+.++....| +++..+..
T Consensus 211 ----------------------~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~ 268 (409)
T TIGR00540 211 ----------------------DNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIA 268 (409)
T ss_pred ----------------------HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHH
Confidence 222222 22221 1111222222444555666778888888777 58999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 274 LAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
++..+...|++++|...++++++..|++
T Consensus 269 ~a~~l~~~g~~~~A~~~l~~~l~~~pd~ 296 (409)
T TIGR00540 269 LAEHLIDCDDHDSAQEIIFDGLKKLGDD 296 (409)
T ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCc
Confidence 9999999999999999999999999988
No 60
>KOG1915|consensus
Probab=99.81 E-value=1.9e-14 Score=142.90 Aligned_cols=471 Identities=12% Similarity=0.165 Sum_probs=334.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Q psy17306 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKER 89 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 89 (904)
.++.-|.--..++++..|..+|+++|..+..+...|...+.+-++.....-|..++++++.+-|.-...|+.....--.+
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 35566666677888999999999999999888999999999999999999999999999999999888999888888889
Q ss_pred CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHH-
Q psy17306 90 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC- 168 (904)
Q Consensus 90 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~- 168 (904)
|+...|.+.|++-+...|+ ..+|......-...+..+.|...|++.+-.+|+ ...|...+..-.+.|+..-|..+|.
T Consensus 155 gNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred cccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999999999998887 567777777778888899999999999888875 6778888888888888888877772
Q ss_pred -------------HHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchh--
Q psy17306 169 -------------VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLL-- 233 (904)
Q Consensus 169 -------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 233 (904)
.....+..-..+..++.|..+|+ -++..-|.+
T Consensus 233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyk---------------------------------yAld~~pk~ra 279 (677)
T KOG1915|consen 233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYK---------------------------------YALDHIPKGRA 279 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHhcCcccH
Confidence 22223333444445555555554 444444433
Q ss_pred HHHHHHHHHHHHHhCC---HHHHH-----HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCccccc
Q psy17306 234 AEAYSNLGNVYKERGQ---LQEAL-----ENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKED 305 (904)
Q Consensus 234 ~~~~~~lg~~~~~~g~---~~~A~-----~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 305 (904)
-..+..+-..--+-|+ .++++ -.|++.+..+|.+.++|+.+-.+....|+.+.-.+.|++++...|...+..
T Consensus 280 eeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr 359 (677)
T KOG1915|consen 280 EELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKR 359 (677)
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHH
Confidence 1222222222222233 23333 347788888999999999999999999999999999999998877652222
Q ss_pred CCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHh
Q psy17306 306 GWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIM 385 (904)
Q Consensus 306 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 385 (904)
.|. +.. |..+
T Consensus 360 ~W~----------------RYI------------------------------------------------------YLWi 369 (677)
T KOG1915|consen 360 YWR----------------RYI------------------------------------------------------YLWI 369 (677)
T ss_pred HHH----------------HHH------------------------------------------------------HHHH
Confidence 221 100 0000
Q ss_pred hcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCC
Q psy17306 386 GQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPG 465 (904)
Q Consensus 386 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 465 (904)
.- .+|..+
T Consensus 370 nY-----------------------------------alyeEl------------------------------------- 377 (677)
T KOG1915|consen 370 NY-----------------------------------ALYEEL------------------------------------- 377 (677)
T ss_pred HH-----------------------------------HHHHHH-------------------------------------
Confidence 00 001000
Q ss_pred CcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhh
Q psy17306 466 GKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNV 545 (904)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (904)
...+....-+.+..++.+-|...-.. +.+|..
T Consensus 378 ------------------------------------------e~ed~ertr~vyq~~l~lIPHkkFtF------aKiWlm 409 (677)
T KOG1915|consen 378 ------------------------------------------EAEDVERTRQVYQACLDLIPHKKFTF------AKIWLM 409 (677)
T ss_pred ------------------------------------------HhhhHHHHHHHHHHHHhhcCcccchH------HHHHHH
Confidence 00111112222334444555443332 467788
Q ss_pred CchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy17306 546 EPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625 (904)
Q Consensus 546 l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 625 (904)
.+.....+.+...|...+.. ++...|.+- ..-..-.+-.++++++.....|++-|+-.|.+..+|...
T Consensus 410 yA~feIRq~~l~~ARkiLG~-----------AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 410 YAQFEIRQLNLTGARKILGN-----------AIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred HHHHHHHHcccHHHHHHHHH-----------HhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 89999999999999999999 999998743 333444556678999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchH-HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHH
Q psy17306 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFA-VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704 (904)
Q Consensus 626 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 704 (904)
|.+-..+|+.+.|...|+-|++... -+.| ..|-..-..-...|.+++|...|++.|+..+... +|...
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~----------ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisF 546 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPA----------LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISF 546 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcc----------cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhH
Confidence 9999999999999996666554210 1112 2334444555678999999999999999987655 66666
Q ss_pred HHHHH-----Hhc-----------chhHHHHHHHHhhccc
Q psy17306 705 GNVLK-----EAR-----------IFDRANTLFYVSSYFM 728 (904)
Q Consensus 705 a~~~~-----~~g-----------~~~~A~~~~~~a~~~~ 728 (904)
|..-. ..| +...|..+|.+|....
T Consensus 547 A~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~ 586 (677)
T KOG1915|consen 547 AKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYL 586 (677)
T ss_pred HHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHH
Confidence 66554 444 5667777887776544
No 61
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=1.4e-19 Score=186.10 Aligned_cols=195 Identities=25% Similarity=0.295 Sum_probs=50.3
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy17306 47 LLSSIHFQCRKLDKSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 124 (904)
Q Consensus 47 ~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 124 (904)
.+|.+++..|++++|++++.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 5577777777777777777554433 366666777777777777777777777777777766666666666666 5667
Q ss_pred CHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHH
Q psy17306 125 DMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNA 204 (904)
Q Consensus 125 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 204 (904)
++++|+..++++.+..+ ++..+..+..++...++++++...+
T Consensus 92 ~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l------------------------------------- 133 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELL------------------------------------- 133 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHH-------------------------------------
T ss_pred ccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHH-------------------------------------
Confidence 77777777766665543 3444555555566666666555555
Q ss_pred HHHhhcCCCcchHHHhhHHHHHhh--cCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy17306 205 IVCNYGGRKPTTLESAHFSTLAIK--QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 282 (904)
Q Consensus 205 ~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (904)
.++.. ..+.++..+..+|.++.+.|++++|+..|+++++.+|+++.+...++.++...|
T Consensus 134 -------------------~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~ 194 (280)
T PF13429_consen 134 -------------------EKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMG 194 (280)
T ss_dssp -------------------HHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTC
T ss_pred -------------------HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Confidence 12111 123455666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhhCC
Q psy17306 283 DMEQAVQAYVTALQYNP 299 (904)
Q Consensus 283 ~~~~A~~~~~~al~~~p 299 (904)
+++++...+....+..|
T Consensus 195 ~~~~~~~~l~~~~~~~~ 211 (280)
T PF13429_consen 195 DYDEAREALKRLLKAAP 211 (280)
T ss_dssp HHHHHHHHHHHHHHH-H
T ss_pred ChHHHHHHHHHHHHHCc
Confidence 66665555555544433
No 62
>KOG0550|consensus
Probab=99.81 E-value=4.8e-18 Score=165.78 Aligned_cols=97 Identities=22% Similarity=0.298 Sum_probs=88.8
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLL----AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 618 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (904)
+...|.-.++.|++..|.+.|.. +|.++|++ +..|.++|.+..++|+..+|+..++.+++++|..
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yte-----------al~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTE-----------ALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY 320 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHH-----------hhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence 46778888999999999999999 99999975 5689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCh
Q psy17306 619 IDGYINLAAALVAAGDMEQAVQAYVTALQYNP 650 (904)
Q Consensus 619 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 650 (904)
..++...|.|+..+++|++|++.|+++++...
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999998888887654
No 63
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.80 E-value=1.2e-17 Score=171.43 Aligned_cols=221 Identities=19% Similarity=0.182 Sum_probs=168.5
Q ss_pred cCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHH
Q psy17306 21 AGDYESAERHCMQLWRQET----NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAL 96 (904)
Q Consensus 21 ~g~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 96 (904)
.+..+.++..+.+++...| ..+..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4566889999999996444 346789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHH
Q psy17306 97 ENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNL 176 (904)
Q Consensus 97 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~ 176 (904)
..|+++++++|++..++.++|.++...|++++|++.++++++.+|+++... ....+....+++++|+..+
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l--------- 188 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENL--------- 188 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHH---------
Confidence 999999999999999999999999999999999999999999999987321 1122334456677776666
Q ss_pred HHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHH--H
Q psy17306 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA--L 254 (904)
Q Consensus 177 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A--~ 254 (904)
.+.....+. ..+. .+.+....|++..+ +
T Consensus 189 -----------------------------------------------~~~~~~~~~--~~~~-~~~~~~~lg~~~~~~~~ 218 (296)
T PRK11189 189 -----------------------------------------------KQRYEKLDK--EQWG-WNIVEFYLGKISEETLM 218 (296)
T ss_pred -----------------------------------------------HHHHhhCCc--cccH-HHHHHHHccCCCHHHHH
Confidence 122222111 1111 24444455555333 2
Q ss_pred HHHH----HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 255 ENYR----HAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 255 ~~~~----~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
..+. ...++.|....+|+.+|.++...|++++|+.+|+++++.+|.+
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 2222 2234456667788888888888888888888888888888644
No 64
>KOG1125|consensus
Probab=99.80 E-value=1.7e-18 Score=176.91 Aligned_cols=234 Identities=19% Similarity=0.250 Sum_probs=202.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCc
Q psy17306 12 LELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 91 (904)
Q Consensus 12 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 91 (904)
|..|..+++.|+..+|+-.|+.+++.+|.++++|..||.+....++-..|+..++++++++|+|..++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHcCChHH
Q psy17306 92 LQEALENYRHAVRLKPDFIDGYIN-------LAAALVAAGDMEQAVQAYVTALQYNP--DLYCVRSDLGNLLKALGRLDE 162 (904)
Q Consensus 92 ~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~ 162 (904)
-.+|+.++.+-+...|........ ..........+..-.+.|-.+....| .++++...||.+|...|.|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999998887654221110 00011111223445566667777777 678899999999999999998
Q ss_pred HHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHH
Q psy17306 163 AKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242 (904)
Q Consensus 163 A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~ 242 (904)
|+.+| +.++..+|++...|..||-
T Consensus 449 aiDcf--------------------------------------------------------~~AL~v~Pnd~~lWNRLGA 472 (579)
T KOG1125|consen 449 AVDCF--------------------------------------------------------EAALQVKPNDYLLWNRLGA 472 (579)
T ss_pred HHHHH--------------------------------------------------------HHHHhcCCchHHHHHHhhH
Confidence 88888 7899999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
.+....+..+|+..|++|+++.|..+.+++++|.++..+|.|.+|+.+|-.+|.+.+..
T Consensus 473 tLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred HhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999998875
No 65
>KOG1125|consensus
Probab=99.80 E-value=1.1e-17 Score=171.17 Aligned_cols=253 Identities=19% Similarity=0.207 Sum_probs=193.3
Q ss_pred HHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCccc
Q psy17306 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKK 303 (904)
Q Consensus 224 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 303 (904)
+.++..+|.++++|..||.+....++-..|+..++++++++|++..++..||.+|...|.-.+|..++.+-+...|...
T Consensus 309 EAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~- 387 (579)
T KOG1125|consen 309 EAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYV- 387 (579)
T ss_pred HHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccch-
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999998887651
Q ss_pred ccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHH
Q psy17306 304 EDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIY 383 (904)
Q Consensus 304 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (904)
|....
T Consensus 388 ---~l~~a------------------------------------------------------------------------ 392 (579)
T KOG1125|consen 388 ---HLVSA------------------------------------------------------------------------ 392 (579)
T ss_pred ---hcccc------------------------------------------------------------------------
Confidence 00000
Q ss_pred HhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccC
Q psy17306 384 IMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSG 463 (904)
Q Consensus 384 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 463 (904)
..+.....
T Consensus 393 ----------------------------------------------~~~~~~~~-------------------------- 400 (579)
T KOG1125|consen 393 ----------------------------------------------GENEDFEN-------------------------- 400 (579)
T ss_pred ----------------------------------------------CccccccC--------------------------
Confidence 00000000
Q ss_pred CCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCC--CCcchHHHHHHHHH
Q psy17306 464 PGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNP--EHPNYVAAARATKY 541 (904)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~ 541 (904)
.. ...+........+.|..+....| .+|++.
T Consensus 401 -----------------------~~----------------s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ-------- 433 (579)
T KOG1125|consen 401 -----------------------TK----------------SFLDSSHLAHIQELFLEAARQLPTKIDPDVQ-------- 433 (579)
T ss_pred -----------------------Cc----------------CCCCHHHHHHHHHHHHHHHHhCCCCCChhHH--------
Confidence 00 00011111222333445555566 567766
Q ss_pred HHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q psy17306 542 VYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621 (904)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 621 (904)
..+|.+|...|+|++|+.+|+. ++..+|++...|..||.++....+.++|+..|++|+++.|.+..+
T Consensus 434 --~~LGVLy~ls~efdraiDcf~~-----------AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~ 500 (579)
T KOG1125|consen 434 --SGLGVLYNLSGEFDRAVDCFEA-----------ALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRV 500 (579)
T ss_pred --hhhHHHHhcchHHHHHHHHHHH-----------HHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeee
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHH
Q psy17306 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685 (904)
Q Consensus 622 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 685 (904)
++|||..++.+|.|.+|+++|-.+|.+.+......-...+ +-.+|-.|-.++..+++.+.+..
T Consensus 501 RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~-se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 501 RYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMA-SENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred ehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcc-hHHHHHHHHHHHHHcCCchHHHH
Confidence 9999999999999999999888888765431111000111 23567666667777777664443
No 66
>KOG2376|consensus
Probab=99.79 E-value=2.6e-15 Score=153.64 Aligned_cols=478 Identities=14% Similarity=0.053 Sum_probs=301.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE 88 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 88 (904)
.+++..-..+...|+|++|++...+++...|++..+......+..+.++|++|+...+.-...... ....+..+.|.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHH
Confidence 567777788889999999999999999999999999999999999999999999655543322222 2233789999999
Q ss_pred hCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHH
Q psy17306 89 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC 168 (904)
Q Consensus 89 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (904)
++..++|+.+++ ..++.+..+....|.+++++|+|++|+..|+..++.+.++.+.......+-.... -.+. .
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~~-~-- 163 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQVQ-L-- 163 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhHH-H--
Confidence 999999999998 4566667788899999999999999999999998887766544332221111000 0000 0
Q ss_pred HHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCch-hHHHHHHHHHHHHHh
Q psy17306 169 VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL-LAEAYSNLGNVYKER 247 (904)
Q Consensus 169 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~lg~~~~~~ 247 (904)
.+.+...|. +.+.+++.+.++...
T Consensus 164 -------------------------------------------------------~q~v~~v~e~syel~yN~Ac~~i~~ 188 (652)
T KOG2376|consen 164 -------------------------------------------------------LQSVPEVPEDSYELLYNTACILIEN 188 (652)
T ss_pred -------------------------------------------------------HHhccCCCcchHHHHHHHHHHHHhc
Confidence 133344444 678899999999999
Q ss_pred CCHHHHHHHHHHHHhhC-------CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcc
Q psy17306 248 GQLQEALENYRHAVRLK-------PD--------FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPF 312 (904)
Q Consensus 248 g~~~~A~~~~~~al~~~-------p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 312 (904)
|+|.+|++.+++++++. .. -..+...++.++..+|+.++|...|...++.+|.+..
T Consensus 189 gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~--------- 259 (652)
T KOG2376|consen 189 GKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEP--------- 259 (652)
T ss_pred ccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCch---------
Confidence 99999999999995541 11 1247788999999999999999999999999987721
Q ss_pred cccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccC
Q psy17306 313 VLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPN 392 (904)
Q Consensus 313 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 392 (904)
..++..--.........+.....+.............. ...-.+.....++.+.+.+...
T Consensus 260 ------~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~-------------l~~Ls~~qk~~i~~N~~lL~l~- 319 (652)
T KOG2376|consen 260 ------SLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFL-------------LSKLSKKQKQAIYRNNALLALF- 319 (652)
T ss_pred ------HHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHH-------------HHHHHHHHHHHHHHHHHHHHHH-
Confidence 00000000000000000000000000000000000000 0000000000111111100000
Q ss_pred CcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccC
Q psy17306 393 GKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPG 472 (904)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 472 (904)
........+-...
T Consensus 320 -------------------------tnk~~q~r~~~a~------------------------------------------ 332 (652)
T KOG2376|consen 320 -------------------------TNKMDQVRELSAS------------------------------------------ 332 (652)
T ss_pred -------------------------hhhHHHHHHHHHh------------------------------------------
Confidence 0000000010111
Q ss_pred cccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhh
Q psy17306 473 KVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTRE 552 (904)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 552 (904)
+.+..|.... .+ .........
T Consensus 333 ----------------------------------------------------lp~~~p~~~~------~~-ll~~~t~~~ 353 (652)
T KOG2376|consen 333 ----------------------------------------------------LPGMSPESLF------PI-LLQEATKVR 353 (652)
T ss_pred ----------------------------------------------------CCccCchHHH------HH-HHHHHHHHH
Confidence 1111111110 00 111111112
Q ss_pred cCChhHHHHHHHHHhhhhhhHHHHHHHhCCch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCcHHHHHH
Q psy17306 553 GGSIPITLTFECRKLDKSAHFSTLAIKQNPLL-AEAYSNLGNVYKERGQLQEALENYRHAVRL-------KPDFIDGYIN 624 (904)
Q Consensus 553 ~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~ 624 (904)
...+..|.+.+.. ....+|.. ..+.+.++.+...+|+++.|++.+...+.. --..|.+-..
T Consensus 354 ~~~~~ka~e~L~~-----------~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~a 422 (652)
T KOG2376|consen 354 EKKHKKAIELLLQ-----------FADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGA 422 (652)
T ss_pred HHHHhhhHHHHHH-----------HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHH
Confidence 2245666666666 77778876 678888999999999999999999944322 1123445556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHH
Q psy17306 625 LAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704 (904)
Q Consensus 625 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 704 (904)
+-.++...++.+.|...+.+++. .+.......+..-..+..++....+.|+-++|...+++.++.+|++.++...+
T Consensus 423 iv~l~~~~~~~~~a~~vl~~Ai~----~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~l 498 (652)
T KOG2376|consen 423 IVALYYKIKDNDSASAVLDSAIK----WWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQL 498 (652)
T ss_pred HHHHHHhccCCccHHHHHHHHHH----HHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHH
Confidence 66677888888889898888887 66665555555555667777788888999999999999999999999999999
Q ss_pred HHHHHHhcchhHHHHHH
Q psy17306 705 GNVLKEARIFDRANTLF 721 (904)
Q Consensus 705 a~~~~~~g~~~~A~~~~ 721 (904)
..+|... +.+.|..+=
T Consensus 499 V~a~~~~-d~eka~~l~ 514 (652)
T KOG2376|consen 499 VTAYARL-DPEKAESLS 514 (652)
T ss_pred HHHHHhc-CHHHHHHHh
Confidence 9998765 455665553
No 67
>KOG1840|consensus
Probab=99.79 E-value=2.8e-16 Score=166.32 Aligned_cols=178 Identities=18% Similarity=0.218 Sum_probs=149.6
Q ss_pred HHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Q psy17306 541 YVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------ 614 (904)
Q Consensus 541 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------ 614 (904)
.++.+++.+|...|++++|..++++++++..+. .....|.-+..+.+++.++...+++++|+.++++++++
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~---~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL---LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh---hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 345888888899999999999999966655441 23345667788999999999999999999999999987
Q ss_pred --CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhh-hcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy17306 615 --KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAI-ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691 (904)
Q Consensus 615 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l-~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 691 (904)
+|.-+..+.+||.+|..+|++++|.+.|++|+.+..+ .. ..++.....+.++|..|.+.+++.+|...|..+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~----~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE----LLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh----cccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 2344678999999999999999999999999985432 22 2356667889999999999999999999999999
Q ss_pred hc-------CcCcHHHHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 692 SL-------DPNFLDAYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 692 ~~-------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
.+ +|+....+.|||.+|..+|++++|+++-.+++
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 88 56667889999999999999999999987776
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.79 E-value=3.3e-17 Score=168.15 Aligned_cols=223 Identities=16% Similarity=0.067 Sum_probs=177.3
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q psy17306 6 QLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNV 85 (904)
Q Consensus 6 ~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 85 (904)
..+..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|.+
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIA 141 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHH
Q psy17306 86 YKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKD 165 (904)
Q Consensus 86 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 165 (904)
+...|++++|+..|+++++.+|+++.... ...+....+++++|+..+.++....+.. .+. .+.+....|+...+.
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~~- 216 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEET- 216 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHHH-
Confidence 99999999999999999999999874222 2233456789999999998877553322 221 345555566664431
Q ss_pred HHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHH
Q psy17306 166 LYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYK 245 (904)
Q Consensus 166 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~ 245 (904)
.+ +.+...+ .......|..+++|+.+|.++.
T Consensus 217 ~~----------------~~~~~~~---------------------------------~~~~~l~~~~~ea~~~Lg~~~~ 247 (296)
T PRK11189 217 LM----------------ERLKAGA---------------------------------TDNTELAERLCETYFYLAKYYL 247 (296)
T ss_pred HH----------------HHHHhcC---------------------------------CCcHHHHHHHHHHHHHHHHHHH
Confidence 22 1111111 1334556777899999999999
Q ss_pred HhCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcC
Q psy17306 246 ERGQLQEALENYRHAVRLKP-DFIDGYINLAAALVAAG 282 (904)
Q Consensus 246 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g 282 (904)
..|++++|+.+|++++..+| +.++..+.+..+....+
T Consensus 248 ~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 248 SLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 99999999999999999996 66666665555544433
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.79 E-value=7.4e-17 Score=181.11 Aligned_cols=201 Identities=15% Similarity=0.020 Sum_probs=157.2
Q ss_pred HHHHHHHHHh---hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh---------CcHHHHHHHHHHHHhcCCCCHHH
Q psy17306 45 LLLLSSIHFQ---CRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKER---------GQLQEALENYRHAVRLKPDFIDG 112 (904)
Q Consensus 45 ~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~ 112 (904)
++..|...+. .+.+++|+.+|+++++++|+++.++..+|.++... +++++|+..++++++++|+++.+
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a 340 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA 340 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence 4445544332 34567888888888888888888888888877643 33788888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhh
Q psy17306 113 YINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTE 192 (904)
Q Consensus 113 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 192 (904)
+..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~------------------------- 395 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI------------------------- 395 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH-------------------------
Confidence 8888888888888888888888888888888888888888888888888887777
Q ss_pred cCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCCHHHH
Q psy17306 193 NIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-PDFIDGY 271 (904)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 271 (904)
++++..+|.++..+..++.+++..|++++|+..+++++... |+++.++
T Consensus 396 -------------------------------~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~ 444 (553)
T PRK12370 396 -------------------------------NECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILL 444 (553)
T ss_pred -------------------------------HHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHH
Confidence 67778888877766666767777888888888888887764 6777778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 272 INLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
..+|.++...|++++|...+.++....|..
T Consensus 445 ~~la~~l~~~G~~~eA~~~~~~~~~~~~~~ 474 (553)
T PRK12370 445 SMQVMFLSLKGKHELARKLTKEISTQEITG 474 (553)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhccchh
Confidence 888888888888888888887766555544
No 70
>KOG1129|consensus
Probab=99.79 E-value=1.2e-17 Score=157.42 Aligned_cols=193 Identities=17% Similarity=0.220 Sum_probs=159.9
Q ss_pred HHHHhhcCHHHHHHHHHHHHhcC---c-------ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy17306 50 SIHFQCRKLDKSAHFSTLAIKQN---P-------LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 119 (904)
Q Consensus 50 ~~~~~~g~~~~A~~~~~~al~~~---p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 119 (904)
.+++..+|...|-......++.+ | .+.+.-..+|.||+.+|.+.+|...++.+++..|. ++.+..++.+
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskv 265 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKV 265 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHH
Confidence 35666677777766555554431 1 13445567899999999999999999999988764 7888889999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcch
Q psy17306 120 LVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTM 199 (904)
Q Consensus 120 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 199 (904)
|....++..|+..+.+.+...|.+...+...++++..+++.++|.++|
T Consensus 266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lY-------------------------------- 313 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLY-------------------------------- 313 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHH--------------------------------
Confidence 999999999999999999999999988999999998888888888888
Q ss_pred hhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy17306 200 KVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 279 (904)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (904)
..+++.+|.+.++.-.+|..|+--++.+-|+.+|++.+.+...+++.+.++|.|..
T Consensus 314 ------------------------k~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ 369 (478)
T KOG1129|consen 314 ------------------------KLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL 369 (478)
T ss_pred ------------------------HHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence 67888888888888888888888999999999999999999889999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCC
Q psy17306 280 AAGDMEQAVQAYVTALQYNP 299 (904)
Q Consensus 280 ~~g~~~~A~~~~~~al~~~p 299 (904)
..++++-++..|++++....
T Consensus 370 yaqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 370 YAQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred hhcchhhhHHHHHHHHhhcc
Confidence 88999988888888886544
No 71
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.79 E-value=7e-16 Score=165.77 Aligned_cols=288 Identities=16% Similarity=0.095 Sum_probs=229.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH-HHHHHhhcCHHHHHHHHHHHHhcCcccHHHH-HHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLL-SSIHFQCRKLDKSAHFSTLAIKQNPLLAEAY-SNLGN 84 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~ 84 (904)
.+...+..|...+..|++++|.+...+.-+..+ ++..++.+ +.+....|+++.|..++.++.+.+|++..+. ...+.
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~ 161 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVR 161 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 456678899999999999999988877655433 34554544 6666999999999999999999999975443 45599
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHH--------HHHHHHHHH
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVR--------SDLGNLLKA 156 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--------~~la~~~~~ 156 (904)
++...|++++|+..++++.+.+|+++.++..++.+|...|++++|+..+.+..+..+.++... ..+......
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988766543322 222221222
Q ss_pred cCChHHHHHHH-----------HHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHH
Q psy17306 157 LGRLDEAKDLY-----------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTL 225 (904)
Q Consensus 157 ~~~~~~A~~~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 225 (904)
..+.+.....+ .....++..+...|+.++|...+.+.++.. ............ ..++..+++...++
T Consensus 242 ~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~-~~~~l~~l~~~l-~~~~~~~al~~~e~ 319 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ-YDERLVLLIPRL-KTNNPEQLEKVLRQ 319 (398)
T ss_pred hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCHHHHHHHhhc-cCCChHHHHHHHHH
Confidence 22222222222 356677999999999999999999988733 333322222222 22667788888999
Q ss_pred HhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 298 (904)
Q Consensus 226 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 298 (904)
.++.+|+++..+..+|.++...+++++|..+|+++++..|++. .+..++.++..+|+.++|..+|++++...
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999954 46789999999999999999999998764
No 72
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.78 E-value=9.6e-16 Score=164.68 Aligned_cols=204 Identities=12% Similarity=0.022 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHH
Q psy17306 43 GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG-YINLAAALV 121 (904)
Q Consensus 43 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~ 121 (904)
...+..|.+.+..|++++|.+.+.+.-+..+.....+...+.+....|+++.|..++.++.+.+|+...+ ....+.++.
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL 164 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3456677788889999999988888766543333344444666699999999999999999999998543 345599999
Q ss_pred HcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhh
Q psy17306 122 AAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKV 201 (904)
Q Consensus 122 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 201 (904)
..|++++|+..++++.+.+|+++.++..++.+|...|++++|...+...
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l------------------------------- 213 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSM------------------------------- 213 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999998877100
Q ss_pred HHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy17306 202 QNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAE-----AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 276 (904)
Q Consensus 202 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (904)
.+....++.... ++..+........+-+.....++..-...|+++.+...++.
T Consensus 214 ----------------------~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~ 271 (398)
T PRK10747 214 ----------------------AKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAE 271 (398)
T ss_pred ----------------------HHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHH
Confidence 011111222111 22222222223333444445555544556789999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCC
Q psy17306 277 ALVAAGDMEQAVQAYVTALQYNP 299 (904)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~p 299 (904)
.+...|+.++|...++++++..+
T Consensus 272 ~l~~~g~~~~A~~~L~~~l~~~~ 294 (398)
T PRK10747 272 HLIECDDHDTAQQIILDGLKRQY 294 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999998544
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.78 E-value=7.7e-17 Score=162.46 Aligned_cols=203 Identities=22% Similarity=0.231 Sum_probs=162.2
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy17306 41 NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 120 (904)
Q Consensus 41 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 120 (904)
.+..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..+++++...|.+..++..+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 36677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcc
Q psy17306 121 VAAGDMEQAVQAYVTALQYN--PDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVT 198 (904)
Q Consensus 121 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 198 (904)
...|++++|+..+++++... |.....+..+|.++...|++++|...+
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~------------------------------- 158 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL------------------------------- 158 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH-------------------------------
Confidence 88888888888888887643 344567777888888888888888777
Q ss_pred hhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy17306 199 MKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 278 (904)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 278 (904)
.+++..+|.++..+..+|.++...|++++|+..+++++...|.++..+..++.++
T Consensus 159 -------------------------~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (234)
T TIGR02521 159 -------------------------TRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIA 213 (234)
T ss_pred -------------------------HHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5666777777778888888888888888888888888888777788888888888
Q ss_pred HHcCCHHHHHHHHHHHHhhCC
Q psy17306 279 VAAGDMEQAVQAYVTALQYNP 299 (904)
Q Consensus 279 ~~~g~~~~A~~~~~~al~~~p 299 (904)
...|+.++|..+.+.+....|
T Consensus 214 ~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 214 RALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHhhHHHHHHHHHHHHhhCc
Confidence 888888888888777666543
No 74
>KOG1915|consensus
Probab=99.78 E-value=3.4e-14 Score=141.15 Aligned_cols=421 Identities=15% Similarity=0.117 Sum_probs=263.8
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q psy17306 64 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL 143 (904)
Q Consensus 64 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 143 (904)
-|+..+..+.-+...|...|.--..++++..|...|++|+..+..+...|...+.+-++......|...+++|+.+-|.-
T Consensus 61 efEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 61 EFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 44455555555666777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHH
Q psy17306 144 YCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFS 223 (904)
Q Consensus 144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 223 (904)
...|+....+-..+|+...|.++|
T Consensus 141 dqlWyKY~ymEE~LgNi~gaRqif-------------------------------------------------------- 164 (677)
T KOG1915|consen 141 DQLWYKYIYMEEMLGNIAGARQIF-------------------------------------------------------- 164 (677)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHH--------------------------------------------------------
Confidence 777777777777777777777777
Q ss_pred HHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCccc
Q psy17306 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKK 303 (904)
Q Consensus 224 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 303 (904)
++-+...|+ ..+|......-.+.+..+.|...|++.+-.+|+ ...|...+..-.+.|+..-|...|+++++...+...
T Consensus 165 erW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 165 ERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 344455554 345555555555555666666666665555554 455555666666666666666666666655544310
Q ss_pred ccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHH
Q psy17306 304 EDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIY 383 (904)
Q Consensus 304 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (904)
. ..++.
T Consensus 243 ~--------------------------------------------------------------------------e~lfv 248 (677)
T KOG1915|consen 243 A--------------------------------------------------------------------------EILFV 248 (677)
T ss_pred H--------------------------------------------------------------------------HHHHH
Confidence 0 00000
Q ss_pred HhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCcccccccccccc
Q psy17306 384 IMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFS 462 (904)
Q Consensus 384 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 462 (904)
..+. ...-.+.++.|.-.|+-++.. |+....
T Consensus 249 aFA~-----------------------fEe~qkE~ERar~iykyAld~~pk~rae------------------------- 280 (677)
T KOG1915|consen 249 AFAE-----------------------FEERQKEYERARFIYKYALDHIPKGRAE------------------------- 280 (677)
T ss_pred HHHH-----------------------HHHHHHHHHHHHHHHHHHHHhcCcccHH-------------------------
Confidence 0000 001111244444445555444 332211
Q ss_pred CCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHH-----HhcccccccCCCCcchHHHHH
Q psy17306 463 GPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYL-----LDSGKSWRTNPEHPNYVAAAR 537 (904)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~ 537 (904)
.+...+...-...|+.....+++ -++...++.+|-+-+.+
T Consensus 281 -------------------------------eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsW---- 325 (677)
T KOG1915|consen 281 -------------------------------ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSW---- 325 (677)
T ss_pred -------------------------------HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHH----
Confidence 00001111111222222222222 24556777888888887
Q ss_pred HHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHH---------HHHHHHHH-HHHcCCHHHHHHH
Q psy17306 538 ATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAE---------AYSNLGNV-YKERGQLQEALEN 607 (904)
Q Consensus 538 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~---------~~~~lg~~-~~~~g~~~~A~~~ 607 (904)
...-.+-...|+.+.-.+.|++ ++...|.... .|.+.+.. -....+.+.+.+.
T Consensus 326 ------fdylrL~e~~g~~~~Ire~yEr-----------AIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 326 ------FDYLRLEESVGDKDRIRETYER-----------AIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred ------HHHHHHHHhcCCHHHHHHHHHH-----------HHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 6666667778999999999999 8887775332 23332211 1356789999999
Q ss_pred HHHHHhhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHH
Q psy17306 608 YRHAVRLKPDF----IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLA 683 (904)
Q Consensus 608 ~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A 683 (904)
|+.+|++-|.. +..|...|....++.+...|.+ .+..++...|.+ ..+-..-.+-.++++++..
T Consensus 389 yq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARk-----------iLG~AIG~cPK~-KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 389 YQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARK-----------ILGNAIGKCPKD-KLFKGYIELELQLREFDRC 456 (677)
T ss_pred HHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHH-----------HHHHHhccCCch-hHHHHHHHHHHHHhhHHHH
Confidence 99999998863 5688888999999999999999 555555555543 2333334445567778888
Q ss_pred HHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhccc
Q psy17306 684 IHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFM 728 (904)
Q Consensus 684 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~ 728 (904)
...|++-|+-.|.+..+|...|.+-..+|+.+.|..+|.-|++..
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 888888888888888888888888888888888888887777654
No 75
>KOG1129|consensus
Probab=99.78 E-value=1.4e-17 Score=156.98 Aligned_cols=234 Identities=18% Similarity=0.166 Sum_probs=214.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCc
Q psy17306 12 LELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 91 (904)
Q Consensus 12 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 91 (904)
.+.|.+|++.|-+.+|.+.++..++..|. ++.+..++.+|.+..+...|+..+...++..|.+...+...++++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 46899999999999999999999988775 88999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy17306 92 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRS 171 (904)
Q Consensus 92 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (904)
+++|+++|+.+++.+|.+.++..-+|.-|+-.++++.|+.+|++.+++.-.+++.+.++|.|+...++++-++..|
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf---- 381 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF---- 381 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH----
Confidence 9999999999999999999998889999999999999999999999999999999999999999999998888877
Q ss_pred hhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhc---CchhHHHHHHHHHHHHHhC
Q psy17306 172 DLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ---NPLLAEAYSNLGNVYKERG 248 (904)
Q Consensus 172 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~lg~~~~~~g 248 (904)
++++.. ....+++|+++|.+....|
T Consensus 382 ----------------------------------------------------~RAlstat~~~~aaDvWYNlg~vaV~iG 409 (478)
T KOG1129|consen 382 ----------------------------------------------------QRALSTATQPGQAADVWYNLGFVAVTIG 409 (478)
T ss_pred ----------------------------------------------------HHHHhhccCcchhhhhhhccceeEEecc
Confidence 233322 2234789999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcc
Q psy17306 249 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLK 302 (904)
Q Consensus 249 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 302 (904)
++.-|..+|+-++..++++.+++.++|.+-.+.|+.++|..++..+-...|+..
T Consensus 410 D~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 410 DFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred chHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 999999999999999999999999999999999999999999999999999884
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.78 E-value=1.4e-16 Score=144.19 Aligned_cols=205 Identities=20% Similarity=0.156 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 121 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 121 (904)
..+...+|.-|+..|++..|...++++++++|++..+|..++.+|...|+.+.|.+.|++++.++|++.+++.+.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcch
Q psy17306 122 AAGDMEQAVQAYVTALQY--NPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTM 199 (904)
Q Consensus 122 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 199 (904)
.+|++++|...|++++.. .|.....+.++|.|-.+.|+++.|...|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l-------------------------------- 162 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYL-------------------------------- 162 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHH--------------------------------
Confidence 999999999999999874 3455688999999999999999999888
Q ss_pred hhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy17306 200 KVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 279 (904)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (904)
++++..+|+.+.....++..++..|+|..|..++++.....+-....+.....+-.
T Consensus 163 ------------------------~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak 218 (250)
T COG3063 163 ------------------------KRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAK 218 (250)
T ss_pred ------------------------HHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999888888888888888999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcc
Q psy17306 280 AAGDMEQAVQAYVTALQYNPLLK 302 (904)
Q Consensus 280 ~~g~~~~A~~~~~~al~~~p~~~ 302 (904)
..|+-+.+-++=.+.-+..|..+
T Consensus 219 ~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 219 RLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HhccHHHHHHHHHHHHHhCCCcH
Confidence 99999999999888889999873
No 77
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.77 E-value=1.4e-16 Score=160.55 Aligned_cols=207 Identities=19% Similarity=0.198 Sum_probs=190.0
Q ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHH
Q psy17306 3 DIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNL 82 (904)
Q Consensus 3 ~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 82 (904)
+.+..+..++.+|..++..|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++.+|.+..++..+
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 105 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNY 105 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCcHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCCh
Q psy17306 83 GNVYKERGQLQEALENYRHAVRLK--PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRL 160 (904)
Q Consensus 83 a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 160 (904)
|.++...|++++|+..|++++... |.....+..+|.++...|++++|...+.+++..+|++..++..++.++...|++
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence 999999999999999999999864 556778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHH
Q psy17306 161 DEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNL 240 (904)
Q Consensus 161 ~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 240 (904)
++|...+ ++++...|.++..+..+
T Consensus 186 ~~A~~~~--------------------------------------------------------~~~~~~~~~~~~~~~~~ 209 (234)
T TIGR02521 186 KDARAYL--------------------------------------------------------ERYQQTYNQTAESLWLG 209 (234)
T ss_pred HHHHHHH--------------------------------------------------------HHHHHhCCCCHHHHHHH
Confidence 9998888 56666678888889999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCC
Q psy17306 241 GNVYKERGQLQEALENYRHAVRLKP 265 (904)
Q Consensus 241 g~~~~~~g~~~~A~~~~~~al~~~p 265 (904)
+.++...|+.++|..+.+.+....|
T Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 210 IRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 9999999999999999888766543
No 78
>KOG0550|consensus
Probab=99.77 E-value=7.4e-17 Score=157.58 Aligned_cols=184 Identities=17% Similarity=0.193 Sum_probs=158.9
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH----
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI---- 619 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---- 619 (904)
..-+.++...|++++|...--. .++.++.+..+++..|.++...++.+.|+..|+++|.++|++.
T Consensus 173 ~lka~cl~~~~~~~~a~~ea~~-----------ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~ 241 (486)
T KOG0550|consen 173 LLKAECLAFLGDYDEAQSEAID-----------ILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKS 241 (486)
T ss_pred HhhhhhhhhcccchhHHHHHHH-----------HHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHh
Confidence 5567778889999999998888 8999999999999999999999999999999999999999864
Q ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy17306 620 --------DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691 (904)
Q Consensus 620 --------~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 691 (904)
..+-.-|.-.++.|++.+|.+.|..+|.++|+ ....++..|.++|.+..++|+..+|+...+.|+
T Consensus 242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~-------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS-------NKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc-------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 35667788899999999999966666666664 122357789999999999999999999999999
Q ss_pred hcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHH
Q psy17306 692 SLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTE 746 (904)
Q Consensus 692 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 746 (904)
++||....++...|.|+..+++|++|++.|+++.....+ ..+...+......+.
T Consensus 315 ~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 315 KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALK 368 (486)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998766 555555555554443
No 79
>KOG1156|consensus
Probab=99.77 E-value=7e-15 Score=152.23 Aligned_cols=194 Identities=16% Similarity=0.173 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 121 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 121 (904)
...++..+.-.+..++|.+.++..+.+++..|..++++.+.|..+..+|+-++|..+...++..++.+..+|..+|.++.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 34566666667788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhh
Q psy17306 122 AAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKV 201 (904)
Q Consensus 122 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 201 (904)
...+|++|+++|+.|+.++|+|..++..++.+..++++++.....-
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr---------------------------------- 132 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETR---------------------------------- 132 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHH----------------------------------
Confidence 9999999999999999999999999999999998888887665544
Q ss_pred HHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC---CCC-----HHHHHH
Q psy17306 202 QNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK---PDF-----IDGYIN 273 (904)
Q Consensus 202 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~-----~~~~~~ 273 (904)
...++..|.....|...+..+...|++..|....+...+.. |+. ......
T Consensus 133 ----------------------~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly 190 (700)
T KOG1156|consen 133 ----------------------NQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLY 190 (700)
T ss_pred ----------------------HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHH
Confidence 46778888888889999999999999999988887776654 322 223444
Q ss_pred HHHHHHHcCCHHHHHHHH
Q psy17306 274 LAAALVAAGDMEQAVQAY 291 (904)
Q Consensus 274 la~~~~~~g~~~~A~~~~ 291 (904)
...+....|.+++|.+.+
T Consensus 191 ~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 191 QNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHcccHHHHHHHH
Confidence 455555666655555443
No 80
>KOG1840|consensus
Probab=99.75 E-value=3.2e-16 Score=165.94 Aligned_cols=249 Identities=25% Similarity=0.312 Sum_probs=208.3
Q ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc---
Q psy17306 3 DIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQ--------ETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ--- 71 (904)
Q Consensus 3 ~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 71 (904)
..|.....+..+|..|...|+|+.|+..++.+++. .|.-......+|.+|...+++++|+.+|++++.+
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34777888888999999999999999999999987 4554555666999999999999999999999975
Q ss_pred -----CcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 72 -----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 138 (904)
Q Consensus 72 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 138 (904)
+|..+.++.+||.+|...|++++|..++++++++. |.-...+..++.++..++++++|+.+++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 66778899999999999999999999999999873 33455788899999999999999999999987
Q ss_pred cC--------CChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhc
Q psy17306 139 YN--------PDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYG 210 (904)
Q Consensus 139 ~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 210 (904)
+. |.-+..+.+||.+|...|++++|.+++ .+|+...++.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~----------------k~ai~~~~~~----------------- 400 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELY----------------KKAIQILREL----------------- 400 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHH----------------HHHHHHHHhc-----------------
Confidence 72 233567888999999999999888888 6666665532
Q ss_pred CCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHcCC
Q psy17306 211 GRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-------KPDFIDGYINLAAALVAAGD 283 (904)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~ 283 (904)
....++.....+..+|..+.+.+++.+|...|.+++.+ +|+....+.+|+.+|..+|+
T Consensus 401 ---------------~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 401 ---------------LGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN 465 (508)
T ss_pred ---------------ccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc
Confidence 22335556778899999999999999999999998876 35666789999999999999
Q ss_pred HHHHHHHHHHHHhhCC
Q psy17306 284 MEQAVQAYVTALQYNP 299 (904)
Q Consensus 284 ~~~A~~~~~~al~~~p 299 (904)
+++|+++.++++....
T Consensus 466 ~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 466 YEAAEELEEKVLNARE 481 (508)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999986543
No 81
>PLN02789 farnesyltranstransferase
Probab=99.75 E-value=6.9e-16 Score=156.99 Aligned_cols=242 Identities=13% Similarity=0.049 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCR-KLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
..++-..-.++...+.+++|+..+.+++..+|.+..+|...+.++...| ++++++..+++++..+|++..+|..++.++
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l 116 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence 3344333334667889999999999999999999999999999999998 689999999999999999999999999999
Q ss_pred HHhCcH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCC---hH
Q psy17306 87 KERGQL--QEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGR---LD 161 (904)
Q Consensus 87 ~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~ 161 (904)
...|+. ++++.++.++++.+|.+..+|..++.++...|++++|++.+.++++.+|.+..+|...+.++...+. ++
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 999874 7889999999999999999999999999999999999999999999999999999999988776532 21
Q ss_pred HHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHH
Q psy17306 162 EAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLG 241 (904)
Q Consensus 162 ~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg 241 (904)
. ..++++ .+..+++..+|++..+|..++
T Consensus 197 ~-------------------~~e~el---------------------------------~y~~~aI~~~P~N~SaW~Yl~ 224 (320)
T PLN02789 197 A-------------------MRDSEL---------------------------------KYTIDAILANPRNESPWRYLR 224 (320)
T ss_pred c-------------------cHHHHH---------------------------------HHHHHHHHhCCCCcCHHHHHH
Confidence 0 001122 222588999999999999999
Q ss_pred HHHHH----hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC------------------CHHHHHHHHHHHHhhCC
Q psy17306 242 NVYKE----RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG------------------DMEQAVQAYVTALQYNP 299 (904)
Q Consensus 242 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g------------------~~~~A~~~~~~al~~~p 299 (904)
.++.. .++..+|+..+.+++...|.++.++..|+.++.... ..++|..++...-+.+|
T Consensus 225 ~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 225 GLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred HHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 99988 456778999999999999999999999999998643 23668888887765565
Q ss_pred Cc
Q psy17306 300 LL 301 (904)
Q Consensus 300 ~~ 301 (904)
-.
T Consensus 305 ir 306 (320)
T PLN02789 305 MR 306 (320)
T ss_pred HH
Confidence 43
No 82
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=2.2e-14 Score=136.04 Aligned_cols=233 Identities=16% Similarity=0.178 Sum_probs=178.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc-----cHHHHHHHHHHH
Q psy17306 12 LELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL-----LAEAYSNLGNVY 86 (904)
Q Consensus 12 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~ 86 (904)
+-.|.-++-..+.++|++.|..+++.+|...++.+.+|.++.+.|..+.|+.+-+..++ .|+ ...+...+|.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence 44667777888899999999999999999999999999999999999999988877665 343 345788889999
Q ss_pred HHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChh-----hHHHHHHHHHHHcCChH
Q psy17306 87 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLY-----CVRSDLGNLLKALGRLD 161 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~ 161 (904)
+..|-++.|...|....+...--..++..+..+|....+|++|++..++..++.+... ..+..++..+....+.+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 9999999999999888776655677888888999999999999999998888877642 22333333333334444
Q ss_pred HHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHH
Q psy17306 162 EAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLG 241 (904)
Q Consensus 162 ~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg 241 (904)
.|+..+ .+++..+|....+-..+|
T Consensus 198 ~A~~~l--------------------------------------------------------~kAlqa~~~cvRAsi~lG 221 (389)
T COG2956 198 RARELL--------------------------------------------------------KKALQADKKCVRASIILG 221 (389)
T ss_pred HHHHHH--------------------------------------------------------HHHHhhCccceehhhhhh
Confidence 443333 477777888888888888
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 242 NVYKERGQLQEALENYRHAVRLKPDF-IDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
++....|+|..|++.++.+++.+|+. +.+...|..+|..+|+.++.+..+.++.+..++.
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 222 RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 88888888888888888888887775 3566777788888888888888888777766655
No 83
>KOG3785|consensus
Probab=99.72 E-value=2.9e-13 Score=129.67 Aligned_cols=441 Identities=15% Similarity=0.081 Sum_probs=269.1
Q ss_pred HHhhcCHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17306 52 HFQCRKLDKSAHFSTLAIKQNPLL-AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130 (904)
Q Consensus 52 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 130 (904)
+....+|..|+.+++-....+... ...-..+|.|++.+|+|++|+..|+-+...+.-+.+.+.++|-|++-+|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 445678888888888776654443 3566778888888899999988888888776666778888888888888888888
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhc
Q psy17306 131 QAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYG 210 (904)
Q Consensus 131 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 210 (904)
..-.++ |+++-....+-.+-.+.++-++-....
T Consensus 112 ~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh------------------------------------------- 144 (557)
T KOG3785|consen 112 SIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFH------------------------------------------- 144 (557)
T ss_pred HHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHH-------------------------------------------
Confidence 776654 555544444444445555544433322
Q ss_pred CCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17306 211 GRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA 290 (904)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (904)
..+. +..+-...++.+++..-.|.+|++.|.+++..+|+....-..++.||.++.-++-+.+.
T Consensus 145 --------------~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqev 207 (557)
T KOG3785|consen 145 --------------SSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEV 207 (557)
T ss_pred --------------HHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 1111 11244556777777777888888888888888888777778888888888888888888
Q ss_pred HHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCC
Q psy17306 291 YVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLF 370 (904)
Q Consensus 291 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (904)
+.-.++..|+++-+. ...
T Consensus 208 l~vYL~q~pdStiA~------------NLk-------------------------------------------------- 225 (557)
T KOG3785|consen 208 LKVYLRQFPDSTIAK------------NLK-------------------------------------------------- 225 (557)
T ss_pred HHHHHHhCCCcHHHH------------HHH--------------------------------------------------
Confidence 888888888772000 000
Q ss_pred CcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC--CCcchhhhHHHHhhhcc
Q psy17306 371 GGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH--PKLTKADKTQVLMSRWR 448 (904)
Q Consensus 371 ~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--p~~~~~~~~~~~~~~~~ 448 (904)
+.-.+.+-. |+ .|.......... .+.+.. ..+-++
T Consensus 226 --------acn~fRl~n-----gr-------------------------~ae~E~k~ladN~~~~~~f~----~~l~rH- 262 (557)
T KOG3785|consen 226 --------ACNLFRLIN-----GR-------------------------TAEDEKKELADNIDQEYPFI----EYLCRH- 262 (557)
T ss_pred --------HHHHhhhhc-----cc-------------------------hhHHHHHHHHhcccccchhH----HHHHHc-
Confidence 000000000 00 000000000000 000000 000000
Q ss_pred cCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCC
Q psy17306 449 YPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPE 528 (904)
Q Consensus 449 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 528 (904)
++ +..+.| +.+++.-|.
T Consensus 263 --NL-------VvFrng------------------------------------------------------EgALqVLP~ 279 (557)
T KOG3785|consen 263 --NL-------VVFRNG------------------------------------------------------EGALQVLPS 279 (557)
T ss_pred --Ce-------EEEeCC------------------------------------------------------ccHHHhchH
Confidence 00 000000 000011111
Q ss_pred CcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17306 529 HPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENY 608 (904)
Q Consensus 529 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 608 (904)
- ...+..+..++...|..+++..+|+..... .+|..|.-+...|.++...|+--...++.
T Consensus 280 L------~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd--------------l~PttP~EyilKgvv~aalGQe~gSreHl 339 (557)
T KOG3785|consen 280 L------MKHIPEARLNLIIYYLNQNDVQEAISLCKD--------------LDPTTPYEYILKGVVFAALGQETGSREHL 339 (557)
T ss_pred H------HhhChHhhhhheeeecccccHHHHHHHHhh--------------cCCCChHHHHHHHHHHHHhhhhcCcHHHH
Confidence 0 011122338888899999999999988776 79999999999999999998765554444
Q ss_pred HHHH---hh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCC
Q psy17306 609 RHAV---RL------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE 679 (904)
Q Consensus 609 ~~al---~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~ 679 (904)
+-+- ++ .-+.......++.+++-..++++.+.++...- ..--++....++++.++...|+
T Consensus 340 KiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~-----------sYF~NdD~Fn~N~AQAk~atgn 408 (557)
T KOG3785|consen 340 KIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE-----------SYFTNDDDFNLNLAQAKLATGN 408 (557)
T ss_pred HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhcCcchhhhHHHHHHHHhcC
Confidence 4333 22 12233456777888888888999888554222 2334455678999999999999
Q ss_pred HHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHH---HHHHHHc
Q psy17306 680 IWLAIHHFEKAVSLDP-NFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEEL---NKKFEQL 755 (904)
Q Consensus 680 ~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~l 755 (904)
+.+|.+.|-+.-..+- +...-...||.||...|..+-|-++|-+.-... +.-.+...++...-+.+++ .+++..+
T Consensus 409 y~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~-e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 409 YVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS-ERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred hHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch-hHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 9999999988766553 334556789999999999999999986653322 1223334444433445554 3444444
Q ss_pred C
Q psy17306 756 G 756 (904)
Q Consensus 756 ~ 756 (904)
+
T Consensus 488 E 488 (557)
T KOG3785|consen 488 E 488 (557)
T ss_pred H
Confidence 3
No 84
>PLN02789 farnesyltranstransferase
Probab=99.72 E-value=2.6e-15 Score=152.84 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=118.2
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc---C
Q psy17306 557 PITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA---G 633 (904)
Q Consensus 557 ~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---g 633 (904)
++++.++.+ +++.+|.+..+|..+|.++...|++++|++.+.++|+.+|.+..+|+.++.+.... |
T Consensus 125 ~~el~~~~k-----------al~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 125 NKELEFTRK-----------ILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHHHHHHH-----------HHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccc
Confidence 556777777 99999999999999999999999999999999999999999999999999998876 3
Q ss_pred CH----HHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCcCcHHHHHHHH
Q psy17306 634 DM----EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNA----QGEIWLAIHHFEKAVSLDPNFLDAYINLG 705 (904)
Q Consensus 634 ~~----~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la 705 (904)
.+ ++++. ...+++..+|++..+|+.++.++.. +++..+|+..+.+++..+|.++.++..|+
T Consensus 194 ~~~~~~e~el~-----------y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~ 262 (320)
T PLN02789 194 GLEAMRDSELK-----------YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLL 262 (320)
T ss_pred cccccHHHHHH-----------HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHH
Confidence 33 24444 6678889999999999999999988 45678899999999999999999999999
Q ss_pred HHHHHh
Q psy17306 706 NVLKEA 711 (904)
Q Consensus 706 ~~~~~~ 711 (904)
.+|...
T Consensus 263 d~~~~~ 268 (320)
T PLN02789 263 DLLCEG 268 (320)
T ss_pred HHHHhh
Confidence 999864
No 85
>KOG2376|consensus
Probab=99.69 E-value=1.5e-12 Score=133.76 Aligned_cols=481 Identities=14% Similarity=0.051 Sum_probs=283.8
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy17306 43 GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 122 (904)
Q Consensus 43 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 122 (904)
..++.-...+...|+|++|.....+.+...|++..+....-.++.+.++|++|+...+.-....-. ....+..+.|.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHH
Confidence 445555567778899999999999999999999999999999999999999999554442221111 1223788999999
Q ss_pred cCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhH
Q psy17306 123 AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQ 202 (904)
Q Consensus 123 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 202 (904)
++..++|+..++ ..++.+..+....|.+++++|+|++|..+|
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY----------------------------------- 133 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIY----------------------------------- 133 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHH-----------------------------------
Confidence 999999999998 456666678888899999999999888888
Q ss_pred HHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHc
Q psy17306 203 NAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD-FIDGYINLAAALVAA 281 (904)
Q Consensus 203 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~ 281 (904)
+...+.+.++.+........-.. --..+- ..+.....|. ..+.+++.+.++...
T Consensus 134 ---------------------~~L~kn~~dd~d~~~r~nl~a~~--a~l~~~--~~q~v~~v~e~syel~yN~Ac~~i~~ 188 (652)
T KOG2376|consen 134 ---------------------QHLAKNNSDDQDEERRANLLAVA--AALQVQ--LLQSVPEVPEDSYELLYNTACILIEN 188 (652)
T ss_pred ---------------------HHHHhcCCchHHHHHHHHHHHHH--HhhhHH--HHHhccCCCcchHHHHHHHHHHHHhc
Confidence 34444444443332222211111 001111 2333444444 677899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhc
Q psy17306 282 GDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECA 361 (904)
Q Consensus 282 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (904)
|+|.+|++.+++++++........... .+.+...+
T Consensus 189 gky~qA~elL~kA~~~~~e~l~~~d~~----------------------------------------eEeie~el----- 223 (652)
T KOG2376|consen 189 GKYNQAIELLEKALRICREKLEDEDTN----------------------------------------EEEIEEEL----- 223 (652)
T ss_pred ccHHHHHHHHHHHHHHHHHhhcccccc----------------------------------------hhhHHHHH-----
Confidence 999999999999976654331000000 00000000
Q ss_pred cccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhH
Q psy17306 362 SKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKT 440 (904)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~ 440 (904)
...+..++-++..+|+ -.+|...|...+.. |.....
T Consensus 224 ----------~~IrvQlayVlQ~~Gq------------------------------t~ea~~iy~~~i~~~~~D~~~--- 260 (652)
T KOG2376|consen 224 ----------NPIRVQLAYVLQLQGQ------------------------------TAEASSIYVDIIKRNPADEPS--- 260 (652)
T ss_pred ----------HHHHHHHHHHHHHhcc------------------------------hHHHHHHHHHHHHhcCCCchH---
Confidence 0122333344444444 67889999999887 332211
Q ss_pred HHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcc
Q psy17306 441 QVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSG 520 (904)
Q Consensus 441 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 520 (904)
..+. -+++.....-..+ ++...-.........+...+...-.
T Consensus 261 -~Av~---~NNLva~~~d~~~----------------------~d~~~l~~k~~~~~~l~~~~l~~Ls------------ 302 (652)
T KOG2376|consen 261 -LAVA---VNNLVALSKDQNY----------------------FDGDLLKSKKSQVFKLAEFLLSKLS------------ 302 (652)
T ss_pred -HHHH---hcchhhhcccccc----------------------CchHHHHHHHHHHHHhHHHHHHHHH------------
Confidence 0000 1111000000000 0000000000000111111111000
Q ss_pred cccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCC
Q psy17306 521 KSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 600 (904)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 600 (904)
-.....++.+.+.+..-.+.-+.+.+.... .-...|.....-........+...
T Consensus 303 ---------------~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~-----------lp~~~p~~~~~~ll~~~t~~~~~~ 356 (652)
T KOG2376|consen 303 ---------------KKQKQAIYRNNALLALFTNKMDQVRELSAS-----------LPGMSPESLFPILLQEATKVREKK 356 (652)
T ss_pred ---------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHh-----------CCccCchHHHHHHHHHHHHHHHHH
Confidence 011112334555554444544444444333 223334433333333444444447
Q ss_pred HHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCC
Q psy17306 601 LQEALENYRHAVRLKPDF-IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE 679 (904)
Q Consensus 601 ~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~ 679 (904)
+.+|++.+....+-+|.. ..+...++.+...+|+++.|++.+...+....+. +..--+.|.+-..+-..+.+.++
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss----~~~~~~~P~~V~aiv~l~~~~~~ 432 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS----ILEAKHLPGTVGAIVALYYKIKD 432 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh----hhhhccChhHHHHHHHHHHhccC
Confidence 899999999999999987 6788899999999999999999887554321111 11122234444555556667666
Q ss_pred HHHHHHHHHHHHh-------cCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHH
Q psy17306 680 IWLAIHHFEKAVS-------LDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEA 743 (904)
Q Consensus 680 ~~~A~~~~~~al~-------~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 743 (904)
.+-|...+.+|+. -.+..-..+..++..-.+.|+-++|...++..+...+.+.++...+-..+.
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~ 503 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYA 503 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 5555555555544 455556677788888888899999999999999998887776655544443
No 86
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=1.6e-13 Score=130.32 Aligned_cols=274 Identities=17% Similarity=0.180 Sum_probs=212.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCC
Q psy17306 116 LAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIK 195 (904)
Q Consensus 116 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 195 (904)
.|.-+.-.++.++|+..|..+++.+|...++...||.++.+.|..+.|+.+.
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiH---------------------------- 92 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIH---------------------------- 92 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHH----------------------------
Confidence 3444555667777777777777777777777777777777777776666665
Q ss_pred CcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCch-----hHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHH
Q psy17306 196 PVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL-----LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 270 (904)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 270 (904)
+.+-..|+ ...+...||.-|+..|-++.|...|........--..+
T Consensus 93 -----------------------------Q~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~A 143 (389)
T COG2956 93 -----------------------------QTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGA 143 (389)
T ss_pred -----------------------------HHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHH
Confidence 33333332 24577889999999999999999999988766666779
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhh
Q psy17306 271 YINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQE 350 (904)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (904)
+..|..+|....++++|++.-++..++.+...
T Consensus 144 lqqLl~IYQ~treW~KAId~A~~L~k~~~q~~------------------------------------------------ 175 (389)
T COG2956 144 LQQLLNIYQATREWEKAIDVAERLVKLGGQTY------------------------------------------------ 175 (389)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc------------------------------------------------
Confidence 99999999999999999999999999888761
Q ss_pred hhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhc
Q psy17306 351 KCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAID 430 (904)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 430 (904)
...
T Consensus 176 ------------------------~~e----------------------------------------------------- 178 (389)
T COG2956 176 ------------------------RVE----------------------------------------------------- 178 (389)
T ss_pred ------------------------hhH-----------------------------------------------------
Confidence 000
Q ss_pred CCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChh
Q psy17306 431 HPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPN 510 (904)
Q Consensus 431 ~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 510 (904)
T Consensus 179 -------------------------------------------------------------------------------- 178 (389)
T COG2956 179 -------------------------------------------------------------------------------- 178 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHH
Q psy17306 511 KFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSN 590 (904)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~ 590 (904)
++.-|..++..+....+.+.|+..+.+ +++.+|.+..+-..
T Consensus 179 ----------------------------IAqfyCELAq~~~~~~~~d~A~~~l~k-----------Alqa~~~cvRAsi~ 219 (389)
T COG2956 179 ----------------------------IAQFYCELAQQALASSDVDRARELLKK-----------ALQADKKCVRASII 219 (389)
T ss_pred ----------------------------HHHHHHHHHHHHhhhhhHHHHHHHHHH-----------HHhhCccceehhhh
Confidence 112346666667777888899999999 99999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHH
Q psy17306 591 LGNVYKERGQLQEALENYRHAVRLKPDF-IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSN 669 (904)
Q Consensus 591 lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~ 669 (904)
+|.++...|+|+.|++.++.+++.+|+. +.+...|..+|...|+.++.+.++.++.+ ..++ +.+-..
T Consensus 220 lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~-----------~~~g-~~~~l~ 287 (389)
T COG2956 220 LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME-----------TNTG-ADAELM 287 (389)
T ss_pred hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----------ccCC-ccHHHH
Confidence 9999999999999999999999999986 56888999999999999999995555444 4333 345556
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHH
Q psy17306 670 LGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYI 702 (904)
Q Consensus 670 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 702 (904)
++..-....-.+.|..+..+-+...|+--..+.
T Consensus 288 l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~r 320 (389)
T COG2956 288 LADLIELQEGIDAAQAYLTRQLRRKPTMRGFHR 320 (389)
T ss_pred HHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHH
Confidence 666666677778999999999999997544443
No 87
>KOG1130|consensus
Probab=99.68 E-value=6.7e-15 Score=143.45 Aligned_cols=300 Identities=21% Similarity=0.224 Sum_probs=222.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCC
Q psy17306 234 AEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGW 307 (904)
Q Consensus 234 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 307 (904)
..+|..||.+|+.+++|++|+++-..-+.+ .-..+.+--+||.++.-+|.|++|+.++.+-+.+....
T Consensus 55 SAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL------ 128 (639)
T KOG1130|consen 55 SAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL------ 128 (639)
T ss_pred HHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHH------
Confidence 457788999999999999999986543332 12234566789999999999999999999888665433
Q ss_pred CCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhc
Q psy17306 308 NTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQ 387 (904)
Q Consensus 308 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 387 (904)
.....-+.++|++|.
T Consensus 129 -----------------------------------------------------------------gDrv~e~RAlYNlgn 143 (639)
T KOG1130|consen 129 -----------------------------------------------------------------GDRVLESRALYNLGN 143 (639)
T ss_pred -----------------------------------------------------------------hHHHhhhHHHhhhhh
Confidence 022234678999999
Q ss_pred ccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCccccccccccccCCCC
Q psy17306 388 LVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGG 466 (904)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 466 (904)
+|...|+..-......+...+. .....++.|.+.|..-+++ ....+
T Consensus 144 vYhakGk~~g~~~pee~g~f~~---ev~~al~~Av~fy~eNL~l~~~lgD------------------------------ 190 (639)
T KOG1130|consen 144 VYHAKGKCTGLEAPEEKGAFNA---EVTSALENAVKFYMENLELSEKLGD------------------------------ 190 (639)
T ss_pred hhhhcccccCCCChhhcccccH---HHHHHHHHHHHHHHHHHHHHHHhhh------------------------------
Confidence 9998888644433333322222 2223355566666555443 11100
Q ss_pred cccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhC
Q psy17306 467 KTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVE 546 (904)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 546 (904)
....+.+|.++
T Consensus 191 ---------------------------------------------------------------------r~aqGRa~GnL 201 (639)
T KOG1130|consen 191 ---------------------------------------------------------------------RLAQGRAYGNL 201 (639)
T ss_pred ---------------------------------------------------------------------HHhhcchhccc
Confidence 01224567999
Q ss_pred chhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----C--CcHH
Q psy17306 547 PDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK----P--DFID 620 (904)
Q Consensus 547 ~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p--~~~~ 620 (904)
|..|+-.|+|+.|+...+..+.++.++-.++-+ -.++.++|+++.-.|+++.|+++|++.+.+. . ..+.
T Consensus 202 GNTyYlLGdf~~ai~~H~~RL~ia~efGDrAae-----RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 202 GNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAE-----RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred CceeeeeccHHHHHHHHHHHHHHHHHhhhHHHH-----HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 999999999999999999988888777665543 4689999999999999999999999987652 2 2356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----Cc
Q psy17306 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL-----DP 695 (904)
Q Consensus 621 a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p 695 (904)
..+.||..|.-..++++||.++++-|.+. +.+........+++.||.++-.+|..++|+.+.++.+++ ||
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIA-----qeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~ 351 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIA-----QELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDT 351 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCc
Confidence 78899999999999999999999988643 334445566789999999999999999999999998887 34
Q ss_pred C-cHHHHHHHHHHHHHhcchhH
Q psy17306 696 N-FLDAYINLGNVLKEARIFDR 716 (904)
Q Consensus 696 ~-~~~a~~~la~~~~~~g~~~~ 716 (904)
. -..+..|+...-...|..+.
T Consensus 352 sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 352 SGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred chhhhhhhhhHHHHHHhCCCcc
Confidence 3 45678888888888886554
No 88
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.64 E-value=7e-15 Score=132.38 Aligned_cols=122 Identities=16% Similarity=0.110 Sum_probs=113.3
Q ss_pred HHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHh
Q psy17306 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKA 656 (904)
Q Consensus 577 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 656 (904)
+++.+|++ ++.+|.++...|++++|+..|++++..+|.+..++.++|.++...|++++|+. .|.++
T Consensus 19 al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~-----------~y~~A 84 (144)
T PRK15359 19 LLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAIN-----------FYGHA 84 (144)
T ss_pred HHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH-----------HHHHH
Confidence 89999875 66789999999999999999999999999999999999999999999999999 77788
Q ss_pred hhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhc
Q psy17306 657 IETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEAR 712 (904)
Q Consensus 657 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 712 (904)
+..+|+++.+++++|.++...|++++|+..|++++.+.|+++..+.++|.+....+
T Consensus 85 l~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 85 LMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999998876543
No 89
>KOG2047|consensus
Probab=99.63 E-value=2.5e-10 Score=118.57 Aligned_cols=524 Identities=15% Similarity=0.141 Sum_probs=329.1
Q ss_pred cCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHh--h------cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCc
Q psy17306 21 AGDY-ESAERHCMQLWRQETNNTGVLLLLSSIHFQ--C------RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 91 (904)
Q Consensus 21 ~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 91 (904)
.|.+ .+-.-+|+++++.-|.+..+|+..-..-.. . ..|+.--.+|++++-.-..-+..|.........+|+
T Consensus 38 ~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~ 117 (835)
T KOG2047|consen 38 AGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGL 117 (835)
T ss_pred ccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcch
Confidence 3444 334457888888888888777765422211 1 124444556666665444456677888888888888
Q ss_pred HHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH--
Q psy17306 92 LQEALENYRHAVRLKPDF--IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY-- 167 (904)
Q Consensus 92 ~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~-- 167 (904)
...-...|.+++..-|-. ..+|-..-......|-++-++..|++-++.+|... ......+...+++++|.+.+
T Consensus 118 iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~---eeyie~L~~~d~~~eaa~~la~ 194 (835)
T KOG2047|consen 118 ITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAR---EEYIEYLAKSDRLDEAAQRLAT 194 (835)
T ss_pred HHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHH---HHHHHHHHhccchHHHHHHHHH
Confidence 888888888888766542 23444444444556666677777777777777653 23344455566666665555
Q ss_pred ------------------------------------------------------HHHHhhHHHHHHcCCHHHHHHHHhhc
Q psy17306 168 ------------------------------------------------------CVRSDLGNLLKALGRLDEAKNLHTEN 193 (904)
Q Consensus 168 ------------------------------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~~ 193 (904)
..|..|+..|.+.|.+++|..+|+++
T Consensus 195 vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeea 274 (835)
T KOG2047|consen 195 VLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEA 274 (835)
T ss_pred hcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 37888999999999999999999998
Q ss_pred CCCcchh-hH---------------HHHHH-h--hcCCCcch---HHHhhHHHH------------HhhcCchhHHHHHH
Q psy17306 194 IKPVTMK-VQ---------------NAIVC-N--YGGRKPTT---LESAHFSTL------------AIKQNPLLAEAYSN 239 (904)
Q Consensus 194 ~~~~~~~-~~---------------~~~~~-~--~~~~~~~~---~~a~~~~~~------------~~~~~~~~~~~~~~ 239 (904)
+.....- -. ...+. . ......+. .-....++. ++..+|.+...|..
T Consensus 275 i~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~k 354 (835)
T KOG2047|consen 275 IQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHK 354 (835)
T ss_pred HHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHh
Confidence 7633210 00 00000 0 01111110 111112222 34556666666665
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhh-CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCccc
Q psy17306 240 LGNVYKERGQLQEALENYRHAVRL-KPDF-----IDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFV 313 (904)
Q Consensus 240 lg~~~~~~g~~~~A~~~~~~al~~-~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 313 (904)
... +..|+..+-+..|..|+.. +|.. ...|..+|..|...|+.+.|...|+++.+..-..
T Consensus 355 RV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~------------ 420 (835)
T KOG2047|consen 355 RVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT------------ 420 (835)
T ss_pred hhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc------------
Confidence 544 4478899999999998864 5543 3588999999999999999999999998754332
Q ss_pred ccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCC
Q psy17306 314 LDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNG 393 (904)
Q Consensus 314 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 393 (904)
..+++..+..-|...
T Consensus 421 -------------------------------------------------------------v~dLa~vw~~waemE---- 435 (835)
T KOG2047|consen 421 -------------------------------------------------------------VEDLAEVWCAWAEME---- 435 (835)
T ss_pred -------------------------------------------------------------hHHHHHHHHHHHHHH----
Confidence 223333333333321
Q ss_pred cccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCc
Q psy17306 394 KILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGK 473 (904)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 473 (904)
.-.+.++.|....+++...|..+.. ..|.+.
T Consensus 436 -------------------lrh~~~~~Al~lm~~A~~vP~~~~~---------~~yd~~--------------------- 466 (835)
T KOG2047|consen 436 -------------------LRHENFEAALKLMRRATHVPTNPEL---------EYYDNS--------------------- 466 (835)
T ss_pred -------------------HhhhhHHHHHHHHHhhhcCCCchhh---------hhhcCC---------------------
Confidence 1123378888888888888665431 001000
Q ss_pred ccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhc
Q psy17306 474 VVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREG 553 (904)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 553 (904)
......+..-..+|...+++....
T Consensus 467 --------------------------------------------------------~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 467 --------------------------------------------------------EPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred --------------------------------------------------------CcHHHHHHHhHHHHHHHHHHHHHh
Confidence 011111222224567777777888
Q ss_pred CChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHH-
Q psy17306 554 GSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--PDFIDGYINLAAALV- 630 (904)
Q Consensus 554 ~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~- 630 (904)
|-++.....|.+ .+.+.--.|....|.|..+....-+++|.+.|++.+.+. |...+.|+..-....
T Consensus 491 gtfestk~vYdr-----------iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 491 GTFESTKAVYDR-----------IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred ccHHHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 888888888888 888777778889999999999999999999999999985 555666654433322
Q ss_pred H--cCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy17306 631 A--AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708 (904)
Q Consensus 631 ~--~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 708 (904)
+ -...+.|...|++||+..|..+.+ ..+...+..-...|--..|+..|++|-..-+. .-.+.+=.+|
T Consensus 560 rygg~klEraRdLFEqaL~~Cpp~~aK---------tiyLlYA~lEEe~GLar~amsiyerat~~v~~--a~~l~myni~ 628 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALDGCPPEHAK---------TIYLLYAKLEEEHGLARHAMSIYERATSAVKE--AQRLDMYNIY 628 (835)
T ss_pred HhcCCCHHHHHHHHHHHHhcCCHHHHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH--HHHHHHHHHH
Confidence 2 237899999888888766543322 34566677777789999999999998766332 2222222333
Q ss_pred HHhc----chhHHHHHHHHhhcccCChhhHHHHH--HHHHHHHHHHHHHHH
Q psy17306 709 KEAR----IFDRANTLFYVSSYFMITDEDIDVIL--ERCEAKTEELNKKFE 753 (904)
Q Consensus 709 ~~~g----~~~~A~~~~~~a~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~ 753 (904)
...- -...-.++|++++++.|+.......+ +..+.++++...+-+
T Consensus 629 I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARa 679 (835)
T KOG2047|consen 629 IKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARA 679 (835)
T ss_pred HHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 2211 12334678888888888765554443 455556666655543
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.63 E-value=6.8e-13 Score=142.66 Aligned_cols=177 Identities=18% Similarity=0.062 Sum_probs=136.3
Q ss_pred CcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHH
Q psy17306 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRS 148 (904)
Q Consensus 72 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 148 (904)
+|+.+.++..+|.++...|+++.|...+.++....|.+ .......+.++...|++++|...++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 68888888888888888888888888888887776644 345667788888888888888888888888888876655
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhh
Q psy17306 149 DLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIK 228 (904)
Q Consensus 149 ~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 228 (904)
. +..+...|....+.... ...+ .....
T Consensus 82 ~-~~~~~~~~~~~~~~~~~-------------------~~~l---------------------------------~~~~~ 108 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHV-------------------ARVL---------------------------------PLWAP 108 (355)
T ss_pred H-hHHHHHhcccccCchhH-------------------HHHH---------------------------------hccCc
Confidence 4 44444444332221111 1111 12335
Q ss_pred cCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 229 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 229 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
.+|........+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+.++++++...|..
T Consensus 109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS 181 (355)
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence 5677778888899999999999999999999999999999999999999999999999999999998877643
No 91
>KOG3785|consensus
Probab=99.63 E-value=1.3e-12 Score=125.14 Aligned_cols=151 Identities=17% Similarity=0.169 Sum_probs=115.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHH
Q psy17306 17 REYQAGDYESAERHCMQLWRQETNN-TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 95 (904)
Q Consensus 17 ~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 95 (904)
-+....+|..|+.+++-.+..+... .....++|.|++..|+|++|+..|+-+...+..++..+.+++.|++-+|.|.+|
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 3566788999999888776554443 356778899999999999999999988887767788999999999999999999
Q ss_pred HHHHHHHHhc--------------C------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHH
Q psy17306 96 LENYRHAVRL--------------K------------PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSD 149 (904)
Q Consensus 96 ~~~~~~al~~--------------~------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 149 (904)
...-.++-+. + .+..+-...+|.+++..-.|.+|+..|.+++.-+|+.......
T Consensus 111 ~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy 190 (557)
T KOG3785|consen 111 KSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVY 190 (557)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHH
Confidence 8776654221 1 1112334556667777778888888888888888888777888
Q ss_pred HHHHHHHcCChHHHHHHH
Q psy17306 150 LGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 150 la~~~~~~~~~~~A~~~~ 167 (904)
++.+|.++.-++-+.+++
T Consensus 191 ~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 191 MALCYYKLDYYDVSQEVL 208 (557)
T ss_pred HHHHHHhcchhhhHHHHH
Confidence 888888888777776655
No 92
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.61 E-value=8.8e-14 Score=139.29 Aligned_cols=190 Identities=17% Similarity=0.169 Sum_probs=154.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHH---
Q psy17306 38 ETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLA---EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID--- 111 (904)
Q Consensus 38 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 111 (904)
++..+..++.+|..++..|++++|+..+++++..+|.++ .+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 445788999999999999999999999999999988765 57899999999999999999999999999988765
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCH
Q psy17306 112 GYINLAAALVAA--------GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRL 183 (904)
Q Consensus 112 ~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~ 183 (904)
+++.+|.++... |++++|++.+++++..+|++..++..+..+....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~-------------------------- 162 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR-------------------------- 162 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH--------------------------
Confidence 688899999876 7899999999999999999865543332221100
Q ss_pred HHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy17306 184 DEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL 263 (904)
Q Consensus 184 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 263 (904)
.........+|.+++..|++.+|+..|++++..
T Consensus 163 -----------------------------------------------~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 163 -----------------------------------------------NRLAGKELYVARFYLKRGAYVAAINRFETVVEN 195 (235)
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 001223457888899999999999999999998
Q ss_pred CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17306 264 KPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPL 300 (904)
Q Consensus 264 ~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 300 (904)
.|+. +.+++.+|.++..+|++++|+.+++.+....|+
T Consensus 196 ~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 196 YPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 7654 579999999999999999999998888776653
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.60 E-value=2.1e-11 Score=131.65 Aligned_cols=251 Identities=19% Similarity=0.159 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYK 87 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 87 (904)
++.++..+.++...|++++|+++++.....-++....+-..|.++...|++++|...|...++.+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 45677788888888888888888888777777778888888888888888888888888888888888888888887773
Q ss_pred HhC-----cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCChhhHHHHHHHHHHHcCChH
Q psy17306 88 ERG-----QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ-AVQAYVTALQYNPDLYCVRSDLGNLLKALGRLD 161 (904)
Q Consensus 88 ~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 161 (904)
... +.+.-...|++.....|....+. .+...+..-..+.. +..++...+.. ..|..+..+-.+|....+..
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAA 160 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHH
Confidence 332 45666777777777777643322 11111211122332 33334444432 34555556655554222211
Q ss_pred HHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchh-HHHHHHH
Q psy17306 162 EAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLL-AEAYSNL 240 (904)
Q Consensus 162 ~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l 240 (904)
-...++ .-+...+..... .... .......|.. ..+++.+
T Consensus 161 ~i~~l~--------------------~~~~~~l~~~~~-----------~~~~---------~~~~~~~p~~~lw~~~~l 200 (517)
T PF12569_consen 161 IIESLV--------------------EEYVNSLESNGS-----------FSNG---------DDEEKEPPSTLLWTLYFL 200 (517)
T ss_pred HHHHHH--------------------HHHHHhhcccCC-----------CCCc---------cccccCCchHHHHHHHHH
Confidence 111111 000000000000 0000 0000112222 4567889
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 241 GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 241 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
+..|...|++++|+.+.+++|+..|..++.+...|.++...|++.+|.+.++.+-.+++.+
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence 9999999999999999999999999999999999999999999999999999999988877
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.60 E-value=2e-12 Score=139.08 Aligned_cols=295 Identities=14% Similarity=0.020 Sum_probs=218.3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNN---TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSN 81 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 81 (904)
|+.+.+++.+|..+...|+++.|...+.++.+..|.+ .+..+..+.++...|++++|...++++++.+|++..++..
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 6788899999999999999999999999988877754 5667788999999999999999999999999999877775
Q ss_pred HHHHHHHhCcHHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHc
Q psy17306 82 LGNVYKERGQLQEALENYRHAV----RLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL 157 (904)
Q Consensus 82 la~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 157 (904)
+..+...|++..+.....+++ ..+|....++..+|.++...|++++|+..++++++++|+++.++..+|.++...
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 656655555444444444444 456777778888999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHH---------------HHHhhHHHHHHcCCHHHHHHHHhhcCCCcc--hhhH---HH-H-HHhh-cCCCc
Q psy17306 158 GRLDEAKDLYC---------------VRSDLGNLLKALGRLDEAKNLHTENIKPVT--MKVQ---NA-I-VCNY-GGRKP 214 (904)
Q Consensus 158 ~~~~~A~~~~~---------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~---~~-~-~~~~-~~~~~ 214 (904)
|++++|+..+. .+..++.++...|++++|+..+++.+.... .... .. . .... .....
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 99999999883 233578899999999999999998753322 1111 11 1 1111 11111
Q ss_pred chHHHhhHH-HHHhhcC--chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcC
Q psy17306 215 TTLESAHFS-TLAIKQN--PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD---------FIDGYINLAAALVAAG 282 (904)
Q Consensus 215 ~~~~a~~~~-~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g 282 (904)
........+ ....... +.........+.++...|+.++|...++........ ........+.++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 111111111 1111111 112233346788889999999999999887654322 2456678899999999
Q ss_pred CHHHHHHHHHHHHhhCCC
Q psy17306 283 DMEQAVQAYVTALQYNPL 300 (904)
Q Consensus 283 ~~~~A~~~~~~al~~~p~ 300 (904)
++++|+..+..++.....
T Consensus 322 ~~~~A~~~L~~al~~a~~ 339 (355)
T cd05804 322 NYATALELLGPVRDDLAR 339 (355)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999987643
No 95
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.59 E-value=2.7e-14 Score=128.53 Aligned_cols=127 Identities=15% Similarity=0.083 Sum_probs=119.4
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCC
Q psy17306 28 ERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 107 (904)
Q Consensus 28 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 107 (904)
...++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46788999999885 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHc
Q psy17306 108 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL 157 (904)
Q Consensus 108 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 157 (904)
.++.+++.+|.++...|++++|+..|++++++.|+++..+..++.+....
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888776543
No 96
>KOG4340|consensus
Probab=99.58 E-value=5.3e-12 Score=118.28 Aligned_cols=185 Identities=19% Similarity=0.194 Sum_probs=142.5
Q ss_pred HhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17306 53 FQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA 132 (904)
Q Consensus 53 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 132 (904)
.+..+|..|++++..-.+.+|.+-..+..+|.||+...+|..|..+|++.-.+.|......+..+..+++.+.+..|+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 56677888888888888888887888888888888888888888888888888888888888888888888888888887
Q ss_pred HHHHHhcCCC-hhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcC
Q psy17306 133 YVTALQYNPD-LYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG 211 (904)
Q Consensus 133 ~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (904)
...+... |. .......-+-+....+++..+..+
T Consensus 101 ~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsL--------------------------------------------- 134 (459)
T KOG4340|consen 101 AFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSL--------------------------------------------- 134 (459)
T ss_pred HHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHH---------------------------------------------
Confidence 7665432 21 112222233334444444443322
Q ss_pred CCcchHHHhhHHHHHhhcCc--hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17306 212 RKPTTLESAHFSTLAIKQNP--LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 289 (904)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (904)
++.-| +++....+.|.+.++.|+++.|++-|+.+++...-++..-++++.++++.|++..|++
T Consensus 135 ---------------veQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk 199 (459)
T KOG4340|consen 135 ---------------VEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALK 199 (459)
T ss_pred ---------------HHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHH
Confidence 23334 5678889999999999999999999999999998889999999999999999999999
Q ss_pred HHHHHHhhC
Q psy17306 290 AYVTALQYN 298 (904)
Q Consensus 290 ~~~~al~~~ 298 (904)
+..+.++..
T Consensus 200 ~iSEIieRG 208 (459)
T KOG4340|consen 200 HISEIIERG 208 (459)
T ss_pred HHHHHHHhh
Confidence 888777543
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.58 E-value=1.7e-13 Score=137.30 Aligned_cols=164 Identities=20% Similarity=0.166 Sum_probs=148.2
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHH---
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNT---GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAE--- 77 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 77 (904)
.+..+..++.+|..++..|++++|+..+++++..+|.++ .+++.+|.++...|++++|+..++++++.+|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 356688999999999999999999999999999999876 68899999999999999999999999999998665
Q ss_pred HHHHHHHHHHHh--------CcHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHH
Q psy17306 78 AYSNLGNVYKER--------GQLQEALENYRHAVRLKPDFIDGY-----------------INLAAALVAAGDMEQAVQA 132 (904)
Q Consensus 78 ~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~ 132 (904)
+++.+|.++... |++++|+..|++++..+|++..++ ..+|.++...|++.+|+..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 188 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR 188 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 799999999886 899999999999999999986432 3678889999999999999
Q ss_pred HHHHHhcCCCh---hhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 133 YVTALQYNPDL---YCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 133 ~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
+++++...|+. +.++..+|.++...|++++|..++
T Consensus 189 ~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~ 226 (235)
T TIGR03302 189 FETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAA 226 (235)
T ss_pred HHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999997764 578999999999999999998877
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.56 E-value=3.7e-13 Score=128.05 Aligned_cols=130 Identities=17% Similarity=0.196 Sum_probs=119.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHH-Hh
Q psy17306 598 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVF-NA 676 (904)
Q Consensus 598 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~-~~ 676 (904)
.++.++++..++++++.+|+++.+|..+|.+|...|++++|+. .|.+++.++|+++.++..+|.++ ..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~-----------a~~~Al~l~P~~~~~~~~lA~aL~~~ 120 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALL-----------AYRQALQLRGENAELYAALATVLYYQ 120 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 6778999999999999999999999999999999999999999 78888889999999999999975 67
Q ss_pred CCC--HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHH
Q psy17306 677 QGE--IWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVIL 738 (904)
Q Consensus 677 ~g~--~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 738 (904)
.|+ +++|...++++++.+|+++.+++++|.++...|++++|+.+|+++++..+.+.+-...+
T Consensus 121 ~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 121 AGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred cCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 787 59999999999999999999999999999999999999999999999998766555544
No 99
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=3.5e-11 Score=118.56 Aligned_cols=288 Identities=17% Similarity=0.100 Sum_probs=227.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL-LAEAYSNLGNVY 86 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 86 (904)
+......|..-+..|+|.+|.....+.-+..+...-++..-+...-.+|+++.|-.++.++-+..++ .......++.+.
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 4556677888889999999999999988777777778888888999999999999999999998443 456788899999
Q ss_pred HHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhh---HHHHHH--HHHHHcCChH
Q psy17306 87 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYC---VRSDLG--NLLKALGRLD 161 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la--~~~~~~~~~~ 161 (904)
...|+++.|.....++++..|.++.+......+|...|+|......+.+.-+..--+.+ -+-..+ .++...++-.
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999998888765332211 111111 1112222222
Q ss_pred HHHH---HH-----------HHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHh
Q psy17306 162 EAKD---LY-----------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAI 227 (904)
Q Consensus 162 ~A~~---~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 227 (904)
.+.. +. .....++.-+...|+.++|..+..++++........... -.-+..+...-+...++.+
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~--~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLI--PRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHH--hhcCCCCchHHHHHHHHHH
Confidence 2222 11 355567888899999999999999988754433321111 1223445555666667999
Q ss_pred hcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 228 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 298 (904)
Q Consensus 228 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 298 (904)
+..|+++..+..+|..+++.+.|.+|..+|+.+++..|+ ...+..+|.++..+|+..+|.+.++.++...
T Consensus 322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999877 6678999999999999999999999998554
No 100
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.55 E-value=2.6e-11 Score=130.89 Aligned_cols=133 Identities=21% Similarity=0.183 Sum_probs=114.8
Q ss_pred HHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q psy17306 541 YVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 620 (904)
Q Consensus 541 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (904)
++++.++..|...|++++|+.+.++ +|...|..++.+...|.++.+.|++.+|.+.++.+-++++.+-.
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~-----------aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy 263 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDK-----------AIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY 263 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH-----------HHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH
Confidence 4678899999999999999999999 99999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcc-------hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD-------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 621 a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
.....+..+++.|+.++|.+.+..-...+ . +|. ..+.....|.+|.+.|++..|+..|..+.+.
T Consensus 264 iNsK~aKy~LRa~~~e~A~~~~~~Ftr~~--------~-~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 264 INSKCAKYLLRAGRIEEAEKTASLFTRED--------V-DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhcCCC--------C-CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 88899999999999999999655322211 1 121 1334456799999999999999999999988
No 101
>KOG2047|consensus
Probab=99.54 E-value=3.6e-09 Score=110.11 Aligned_cols=595 Identities=13% Similarity=0.100 Sum_probs=350.4
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhhcCH-HHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--------CcHHHHHHHHHH
Q psy17306 31 CMQLWRQETNNTGVLLLLSSIHFQCRKL-DKSAHFSTLAIKQNPLLAEAYSNLGNVYKER--------GQLQEALENYRH 101 (904)
Q Consensus 31 ~~~~l~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~ 101 (904)
|+.-+-.+|.+...|...... ..|.. .+-.-+|+++++.-|.+...|+..-..-..+ ..|..--.+|++
T Consensus 16 fEeEilRnp~svk~W~RYIe~--k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er 93 (835)
T KOG2047|consen 16 FEEEILRNPFSVKCWLRYIEH--KAGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFER 93 (835)
T ss_pred hHHHHHcCchhHHHHHHHHHH--HccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHH
Confidence 444455677777777665443 34443 4456789999999999888887655333221 246677788888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHHcCChHHHHHHHHHHHhh------
Q psy17306 102 AVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD--LYCVRSDLGNLLKALGRLDEAKDLYCVRSDL------ 173 (904)
Q Consensus 102 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l------ 173 (904)
++..--+.+..|.........+|+...-...|.+++..-|- +..+|-..-......+-++-++..|+.+..+
T Consensus 94 ~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~e 173 (835)
T KOG2047|consen 94 CLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEARE 173 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHH
Confidence 88877778889999999999999999999999999988773 3456766777777788888888888655443
Q ss_pred --HHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHH
Q psy17306 174 --GNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 251 (904)
Q Consensus 174 --~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 251 (904)
...+...+++++|.+.+...+.... -..+..+.+...|..+.....+.-+.-
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~--------------------------f~sk~gkSn~qlw~elcdlis~~p~~~ 227 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDE--------------------------FVSKKGKSNHQLWLELCDLISQNPDKV 227 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchh--------------------------hhhhcccchhhHHHHHHHHHHhCcchh
Confidence 5677788888888888876554221 112223344445555544444332222
Q ss_pred HH---HHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhh
Q psy17306 252 EA---LENYRHAVRLKPDF-IDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGA 327 (904)
Q Consensus 252 ~A---~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 327 (904)
.. -..++..+...++. ...|..||..|.+.|.++.|...|++++..--.. ..+..-++....+.....
T Consensus 228 ~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tv--------rDFt~ifd~Ya~FEE~~~ 299 (835)
T KOG2047|consen 228 QSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTV--------RDFTQIFDAYAQFEESCV 299 (835)
T ss_pred cccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheeh--------hhHHHHHHHHHHHHHHHH
Confidence 21 12344444444443 3467777777777777777777777777543322 001111111111111111
Q ss_pred hhcccc--cccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccC
Q psy17306 328 LVMMKR--PVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVE 405 (904)
Q Consensus 328 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 405 (904)
...|.. ...+....-. +....++..-..+..-..-............+.
T Consensus 300 ~~~me~a~~~~~n~ed~~-----------------------------dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~ 350 (835)
T KOG2047|consen 300 AAKMELADEESGNEEDDV-----------------------------DLELHMARFESLMNRRPLLLNSVLLRQNPHNVE 350 (835)
T ss_pred HHHHhhhhhcccChhhhh-----------------------------hHHHHHHHHHHHHhccchHHHHHHHhcCCccHH
Confidence 111100 0000000000 000011110000000000000000000000000
Q ss_pred cccccHHHHHHHHhhhHHHHHHhhcC--CCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhccc
Q psy17306 406 PLGDTEEQFYEKIDFDTEDFRTAIDH--PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIV 483 (904)
Q Consensus 406 ~~~~~~~~~~~~~~~A~~~~~~~l~~--p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (904)
.+-.-...+.....+-+..|..++.. |..+.. ..+
T Consensus 351 eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~G------------------s~~------------------------- 387 (835)
T KOG2047|consen 351 EWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVG------------------SPG------------------------- 387 (835)
T ss_pred HHHhhhhhhcCChHHHHHHHHHHHHccCcccCCC------------------Chh-------------------------
Confidence 00001111112255667777777765 443321 001
Q ss_pred CCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHH
Q psy17306 484 PNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFE 563 (904)
Q Consensus 484 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 563 (904)
.+-..++.+|...++...+...++++.++--. ....++.+|..-|..-....+++.|+.+.
T Consensus 388 ----------~Lw~~faklYe~~~~l~~aRvifeka~~V~y~---------~v~dLa~vw~~waemElrh~~~~~Al~lm 448 (835)
T KOG2047|consen 388 ----------TLWVEFAKLYENNGDLDDARVIFEKATKVPYK---------TVEDLAEVWCAWAEMELRHENFEAALKLM 448 (835)
T ss_pred ----------hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc---------chHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 12235677777777777777776655443221 12234567788899999999999999999
Q ss_pred HHHhhhhhhHH-HHHHHhCC------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH
Q psy17306 564 CRKLDKSAHFS-TLAIKQNP------LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636 (904)
Q Consensus 564 ~~~l~~a~~~~-~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~ 636 (904)
+++...-..-. ...-...| .+...|...+......|-++.....|++++.+.--.|..-.|.|..+....-++
T Consensus 449 ~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfe 528 (835)
T KOG2047|consen 449 RRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFE 528 (835)
T ss_pred HhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHH
Confidence 88322110000 00000011 235678889999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHH---HhCCCHHHHHHHHHHHHhcCcCc--HHHHHHHHHHHHHh
Q psy17306 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVF---NAQGEIWLAIHHFEKAVSLDPNF--LDAYINLGNVLKEA 711 (904)
Q Consensus 637 ~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~---~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~ 711 (904)
+|.+.|++.+.+.+ -|+..+.|...-..+ +.--..+.|...|++||+.-|.. -.++...+.+-.+.
T Consensus 529 esFk~YErgI~LFk---------~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~ 599 (835)
T KOG2047|consen 529 ESFKAYERGISLFK---------WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEH 599 (835)
T ss_pred HHHHHHHcCCccCC---------CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 99996666655331 355556665543332 33457899999999999997732 23456667777888
Q ss_pred cchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHH----------HHHHHHHcCCCCCcc
Q psy17306 712 RIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEE----------LNKKFEQLGESSLRD 762 (904)
Q Consensus 712 g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~l~~~~~~~ 762 (904)
|--..|+.+|+++-.... .++-..+...+..+.++ +.++++.+.....+.
T Consensus 600 GLar~amsiyerat~~v~-~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~ 659 (835)
T KOG2047|consen 600 GLARHAMSIYERATSAVK-EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKARE 659 (835)
T ss_pred hHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHH
Confidence 999999999999866543 44444455555444332 677777765554433
No 102
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.49 E-value=2.7e-12 Score=143.87 Aligned_cols=143 Identities=13% Similarity=0.090 Sum_probs=136.0
Q ss_pred HHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHh
Q psy17306 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKA 656 (904)
Q Consensus 577 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 656 (904)
.....|.++.++.+||.+....|.+++|...++.++++.|++..++.+++.++.+.+++++|+. .++++
T Consensus 78 ~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~-----------~~~~~ 146 (694)
T PRK15179 78 YVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRA-----------EIELY 146 (694)
T ss_pred HHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHH-----------HHHHH
Confidence 3445788899999999999999999999999999999999999999999999999999999999 78888
Q ss_pred hhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCC
Q psy17306 657 IETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 657 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 730 (904)
+..+|+++.+++.+|.++..+|++++|+..|++++..+|+++.++.++|.++...|+.++|...|+++++...+
T Consensus 147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999987654
No 103
>KOG1130|consensus
Probab=99.48 E-value=8e-13 Score=129.20 Aligned_cols=266 Identities=21% Similarity=0.241 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhhcCHHHHHHHHHHHHhc------CcccHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNN----TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ------NPLLAE 77 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 77 (904)
+..+-..|..+++.|++...+.+|+.+++....+ ..++..+|..|+..++|++|+++-.--+.+ .-..+.
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence 3456678899999999999999999999987765 457888999999999999999876544332 223455
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCC--------------------HHHHHH
Q psy17306 78 AYSNLGNVYKERGQLQEALENYRHAVRLKP------DFIDGYINLAAALVAAGD--------------------MEQAVQ 131 (904)
Q Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~ 131 (904)
+--++|.++...|.|++|+.+..+-+.+.. ....+++++|.+|...|+ ++.|++
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~ 176 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK 176 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence 677899999999999999999988876532 235689999999998775 344555
Q ss_pred HHHHHHhcCCC------hhhHHHHHHHHHHHcCChHHHHHHH-----------------HHHHhhHHHHHHcCCHHHHHH
Q psy17306 132 AYVTALQYNPD------LYCVRSDLGNLLKALGRLDEAKDLY-----------------CVRSDLGNLLKALGRLDEAKN 188 (904)
Q Consensus 132 ~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~-----------------~~~~~l~~~~~~~g~~~~A~~ 188 (904)
+|..-+++... ...++-+||..|+-+|+++.|+... ++..++|..+.-.|+++.|++
T Consensus 177 fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~e 256 (639)
T KOG1130|consen 177 FYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIE 256 (639)
T ss_pred HHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHH
Confidence 55555554222 1356778899999999999998876 366778999999999999999
Q ss_pred HHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC----
Q psy17306 189 LHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK---- 264 (904)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---- 264 (904)
.|+..+. + ...+......+...+.||..|.-..++.+||.++++-+.+.
T Consensus 257 hYK~tl~---------L------------------Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~ 309 (639)
T KOG1130|consen 257 HYKLTLN---------L------------------AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE 309 (639)
T ss_pred HHHHHHH---------H------------------HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9985332 0 01122233446788999999999999999999999987763
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17306 265 --PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPL 300 (904)
Q Consensus 265 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 300 (904)
.....++..||..+...|..++|+.+.+..++....
T Consensus 310 DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~e 347 (639)
T KOG1130|consen 310 DRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLE 347 (639)
T ss_pred HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 234568899999999999999999999988876543
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.48 E-value=1.5e-12 Score=123.98 Aligned_cols=124 Identities=19% Similarity=0.177 Sum_probs=100.3
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH-HHhCc--HHHHHH
Q psy17306 21 AGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY-KERGQ--LQEALE 97 (904)
Q Consensus 21 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 97 (904)
.++.++++..++++++.+|++++.|..+|.++...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 455577778888888888888888888888888888888888888888888888888888888864 56666 488888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChh
Q psy17306 98 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 98 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 144 (904)
.++++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 88888888888888888888888888888888888888888877654
No 105
>KOG0553|consensus
Probab=99.47 E-value=2.5e-12 Score=122.19 Aligned_cols=129 Identities=30% Similarity=0.369 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchH
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFA 664 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~ 664 (904)
++-+-.-|.-+...++|.+|+..|.+||+++|.++..|.+.+.+|.++|.++.|++ .+..++.++|...
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVk-----------Dce~Al~iDp~ys 149 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVK-----------DCESALSIDPHYS 149 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHH-----------HHHHHHhcChHHH
Confidence 45677788889999999999999999999999999999999999999999999999 8888889999999
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchh---HHHHHHHHh
Q psy17306 665 VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFD---RANTLFYVS 724 (904)
Q Consensus 665 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~---~A~~~~~~a 724 (904)
.+|..||.+|..+|++++|++.|+|||+++|++.....+|..+-.+++... .+...+.-+
T Consensus 150 kay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~ 212 (304)
T KOG0553|consen 150 KAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMA 212 (304)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhh
Confidence 999999999999999999999999999999999999999999988887766 444444433
No 106
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.45 E-value=1.6e-12 Score=117.37 Aligned_cols=125 Identities=18% Similarity=0.201 Sum_probs=82.3
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHH
Q psy17306 607 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHH 686 (904)
Q Consensus 607 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 686 (904)
.|++++..+|++..+.+.+|.++...|++++|+. .+.+++..+|+++.++..+|.++...|++++|+..
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~-----------~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 73 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALK-----------LFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDA 73 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHH-----------HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666667777776777777666 44555555666666677777777666777777777
Q ss_pred HHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHH
Q psy17306 687 FEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCE 742 (904)
Q Consensus 687 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 742 (904)
|++++..+|.++..++.+|.++...|++++|+..|++++...|++.........+.
T Consensus 74 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 129 (135)
T TIGR02552 74 YALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAE 129 (135)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 77776777776777777777777777777777777777666665555444444333
No 107
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.45 E-value=6.3e-12 Score=141.33 Aligned_cols=239 Identities=9% Similarity=-0.030 Sum_probs=144.3
Q ss_pred CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHH-----------------HHH
Q psy17306 38 ETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALE-----------------NYR 100 (904)
Q Consensus 38 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-----------------~~~ 100 (904)
+|.+..++..++..+...+++++|+..++.+++.+|+...+++.+|.++.+.+++.+|.. ++.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHH
Confidence 444444555555555455555555555555555555544555555554444444444433 333
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHc
Q psy17306 101 HAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKAL 180 (904)
Q Consensus 101 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 180 (904)
..+...+.+..+++.+|.||-++|++++|...|+++++.+|+++.++.++|..|... +.++|+.++..... .+...
T Consensus 107 ~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~---~~i~~ 182 (906)
T PRK14720 107 DKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY---RFIKK 182 (906)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH---HHHhh
Confidence 333334444578888888888888888888888888888888888888888888888 88888887732222 25555
Q ss_pred CCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhc--CchhHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17306 181 GRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEALENYR 258 (904)
Q Consensus 181 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 258 (904)
+++..+..+..+.+...+..... -....++.... .......+.-+=..|...++|++++.+++
T Consensus 183 kq~~~~~e~W~k~~~~~~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 183 KQYVGIEEIWSKLVHYNSDDFDF---------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred hcchHHHHHHHHHHhcCcccchH---------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 56666666555432211111100 00000111111 11224455555577788888999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 259 HAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 298 (904)
Q Consensus 259 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 298 (904)
.+++.+|.+..+...++.+|. +.|.. ...++..+++.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s 284 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMS 284 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHh
Confidence 999999999999999998887 44443 45555555543
No 108
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.45 E-value=1.2e-11 Score=115.39 Aligned_cols=140 Identities=24% Similarity=0.263 Sum_probs=76.8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC
Q psy17306 27 AERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 106 (904)
Q Consensus 27 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 106 (904)
+...+-+....+|.+..+ ..++..+...|+-+.+..+..++...+|.+...+..+|......|+|.+|+..+.++..+.
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 333444444455555555 5555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 107 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 107 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
|++..+|..+|.+|.+.|++++|...|.+++++.|+++.+..++|..+.-.|+++.|..++
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~ll 191 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLL 191 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555444
No 109
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=1.4e-09 Score=107.57 Aligned_cols=205 Identities=14% Similarity=0.011 Sum_probs=148.8
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Q psy17306 44 VLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD-FIDGYINLAAALVA 122 (904)
Q Consensus 44 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 122 (904)
....-|..-+..|+|.+|.+...+.-+..+....++..-+.+.-++|+++.|-.++.++-+..++ ........+.....
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 33445667778899999999999998888887888888889999999999999999999998444 35678889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhH
Q psy17306 123 AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQ 202 (904)
Q Consensus 123 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 202 (904)
.|+++.|.....++++..|.++.+.....++|...|++.+...++....
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~------------------------------- 214 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLR------------------------------- 214 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999988877761110
Q ss_pred HHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHH--HHHhCCHHHH---HHHHHHHHhhCCCCHHHHHHHHHH
Q psy17306 203 NAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNV--YKERGQLQEA---LENYRHAVRLKPDFIDGYINLAAA 277 (904)
Q Consensus 203 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~--~~~~g~~~~A---~~~~~~al~~~p~~~~~~~~la~~ 277 (904)
+.-..++....-+-..+.. +-...+-..+ ..+.+..-..-..++.....++.-
T Consensus 215 ----------------------ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~ 272 (400)
T COG3071 215 ----------------------KAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAER 272 (400)
T ss_pred ----------------------HccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHH
Confidence 1111111111111111111 1111111111 123333222233557788888999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 278 LVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 278 ~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
+...|++++|.+..+.+++..-+.
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~D~ 296 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQWDP 296 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhccCh
Confidence 999999999999999999876554
No 110
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.44 E-value=2.5e-12 Score=112.06 Aligned_cols=122 Identities=12% Similarity=0.021 Sum_probs=107.7
Q ss_pred HHhhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy17306 611 AVRLK-PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEK 689 (904)
Q Consensus 611 al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 689 (904)
...+. ++..+..+.+|..+...|++++|.. .|+-....+|.++..|++||.++..+|++++|+..|.+
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~-----------~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~ 94 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAAR-----------LFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGR 94 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHH-----------HHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34566 7788999999999999999999999 77777789999999999999999999999999999999
Q ss_pred HHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHH
Q psy17306 690 AVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEA 743 (904)
Q Consensus 690 al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 743 (904)
|+.++|++|.+++++|.|+...|+.+.|.+.|+.++....+.+.-..+..++..
T Consensus 95 A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~ 148 (157)
T PRK15363 95 AAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEK 148 (157)
T ss_pred HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence 999999999999999999999999999999999999877544444444444443
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.44 E-value=6.7e-12 Score=117.15 Aligned_cols=164 Identities=20% Similarity=0.193 Sum_probs=154.3
Q ss_pred HHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHh
Q psy17306 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKA 656 (904)
Q Consensus 577 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 656 (904)
....+|++..+ .+++..+...|+-+.+.....++...+|.+...+..+|......|++.+|+. .+.++
T Consensus 59 ~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~-----------~~rkA 126 (257)
T COG5010 59 AVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVS-----------VLRKA 126 (257)
T ss_pred HHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHH-----------HHHHH
Confidence 67789999999 9999999999999999999999999999999999899999999999999999 88888
Q ss_pred hhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHH
Q psy17306 657 IETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDV 736 (904)
Q Consensus 657 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 736 (904)
...+|+++.+|..+|.+|.+.|++++|...|.+++++.|+.+.+..|+|..+.-.|+++.|..++..+....+.+..+..
T Consensus 127 ~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~ 206 (257)
T COG5010 127 ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQ 206 (257)
T ss_pred hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy17306 737 ILERCEAKTEELNKKF 752 (904)
Q Consensus 737 ~l~~~~~~~~~~~~~~ 752 (904)
+++......+++..+-
T Consensus 207 NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 207 NLALVVGLQGDFREAE 222 (257)
T ss_pred HHHHHHhhcCChHHHH
Confidence 9999998888776663
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.43 E-value=1e-09 Score=133.84 Aligned_cols=238 Identities=16% Similarity=0.001 Sum_probs=149.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHh
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK-QNPLLAEAYSNLGNVYKER 89 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 89 (904)
+-..|..+...|++.+|+..+..+-.. +.-.......+......|++..+..++..+-. ....++......+.++...
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 345556677788888888766554111 11223445566677777888776666654310 1112334556777888888
Q ss_pred CcHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChh-----hHHHHHHHHHH
Q psy17306 90 GQLQEALENYRHAVRLKPD---------FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLY-----CVRSDLGNLLK 155 (904)
Q Consensus 90 g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~ 155 (904)
|++++|...+.++....+. .......+|.++...|++++|...+++++...+... .+...+|.++.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 9999999888887654221 123455677888889999999999999887544321 23344555555
Q ss_pred HcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHH
Q psy17306 156 ALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAE 235 (904)
Q Consensus 156 ~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 235 (904)
..|++++|...+ .+|+.... . .........
T Consensus 503 ~~G~~~~A~~~~----------------~~al~~~~---------------------------------~-~g~~~~~~~ 532 (903)
T PRK04841 503 CKGELARALAMM----------------QQTEQMAR---------------------------------Q-HDVYHYALW 532 (903)
T ss_pred HcCCHHHHHHHH----------------HHHHHHHh---------------------------------h-hcchHHHHH
Confidence 666666665555 22222211 0 011111234
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCC-----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17306 236 AYSNLGNVYKERGQLQEALENYRHAVRLKP-----D---FIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299 (904)
Q Consensus 236 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 299 (904)
++..+|.++...|++++|...+++++.... . ....+..+|.++...|++++|...+.+++....
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 667788888999999999999888887521 1 123455678888888999999888888876543
No 113
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.43 E-value=3.8e-11 Score=135.17 Aligned_cols=174 Identities=12% Similarity=0.013 Sum_probs=119.2
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 622 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 622 (904)
+..+|.+|.+.|+.++|...|++ +++.+|+++.++.++|..|... +.++|++++.+|+..
T Consensus 119 l~~LA~~Ydk~g~~~ka~~~yer-----------~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------- 178 (906)
T PRK14720 119 LRTLAEAYAKLNENKKLKGVWER-----------LVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------- 178 (906)
T ss_pred HHHHHHHHHHcCChHHHHHHHHH-----------HHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------
Confidence 37778888888888888888888 8888888888888888888887 888888888888776
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHH------hhhc---CcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLK------AIET---RPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 623 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~l~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
+...+++.++.+...+.+..+|+.+.- .+.. .......+.-+=..|...++|++++..++.+|+.
T Consensus 179 ------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 179 ------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred ------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 555567777777666666665541111 1111 1123344555558888999999999999999999
Q ss_pred CcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHH
Q psy17306 694 DPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCE 742 (904)
Q Consensus 694 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 742 (904)
+|.|..+...++.+|...=.-..=.+-|-+..++...+..+...+...+
T Consensus 253 ~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fe 301 (906)
T PRK14720 253 DNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFE 301 (906)
T ss_pred CCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHH
Confidence 9999999999999998332111122222233333333345555555444
No 114
>KOG3060|consensus
Probab=99.43 E-value=7.9e-11 Score=108.56 Aligned_cols=204 Identities=14% Similarity=0.085 Sum_probs=170.6
Q ss_pred HcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHH
Q psy17306 20 QAGDYESAERHCMQLWRQETN------NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 93 (904)
Q Consensus 20 ~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 93 (904)
...+.++-+++...++...+. .-.++-....+....|+.+-|..++++.....|++.......|..+...|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 355677778887777654433 23344455666778899999999999988888999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy17306 94 EALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDL 173 (904)
Q Consensus 94 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l 173 (904)
+|+++|+..++-+|.+..++...-.+...+|+.-+|++.+...++..+.+.++|..++.+|...|++.+|.-++
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fCl------ 177 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCL------ 177 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHH------
Confidence 99999999999999998888888888888999999999999999999999999999999999999998888777
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhC---CH
Q psy17306 174 GNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERG---QL 250 (904)
Q Consensus 174 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~ 250 (904)
++.+-..|.++..+..+|.+++-.| ++
T Consensus 178 --------------------------------------------------EE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 178 --------------------------------------------------EELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred --------------------------------------------------HHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 6888889999999999999888766 56
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy17306 251 QEALENYRHAVRLKPDFIDGYINLAAALV 279 (904)
Q Consensus 251 ~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (904)
.-|.++|.++++++|.+..+++++-.+-.
T Consensus 208 ~~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 208 ELARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 77899999999999988888877665543
No 115
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.41 E-value=5.9e-12 Score=113.65 Aligned_cols=119 Identities=19% Similarity=0.223 Sum_probs=113.9
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCC
Q psy17306 29 RHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 108 (904)
Q Consensus 29 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 108 (904)
..+++++..+|++..+.+.+|.+++..|++++|...+++++..+|.++.++..+|.++...|++++|+..+++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHH
Q psy17306 109 FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVR 147 (904)
Q Consensus 109 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 147 (904)
++..++.+|.++...|++++|+..|+++++.+|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999999999999886543
No 116
>KOG3060|consensus
Probab=99.41 E-value=5.1e-11 Score=109.79 Aligned_cols=185 Identities=14% Similarity=0.094 Sum_probs=159.8
Q ss_pred HHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q psy17306 542 VYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621 (904)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 621 (904)
+|.....+....|+.+.|..++.+ .-...|++..+.-.-|..+...|++++|+++|+..++-+|.+..+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~-----------L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~ 122 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQ-----------LRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVI 122 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHH-----------HHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHH
Confidence 345556666778888889888888 777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHH
Q psy17306 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAY 701 (904)
Q Consensus 622 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 701 (904)
+-+.--+...+|+.-+|++ .+...++.-+.+.++|..++.+|...|+|++|.-++++.+-+.|.++-.+
T Consensus 123 ~KRKlAilka~GK~l~aIk-----------~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f 191 (289)
T KOG3060|consen 123 RKRKLAILKAQGKNLEAIK-----------ELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYF 191 (289)
T ss_pred HHHHHHHHHHcCCcHHHHH-----------HHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHH
Confidence 9999999999999999999 66666677888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc---chhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHH
Q psy17306 702 INLGNVLKEAR---IFDRANTLFYVSSYFMITDEDIDVILERCEAKTEEL 748 (904)
Q Consensus 702 ~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 748 (904)
..+|.++.-+| +..-|.++|.+++++.+.+-.....+-.|-..+.+.
T Consensus 192 ~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~ 241 (289)
T KOG3060|consen 192 QRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQI 241 (289)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHH
Confidence 99999988776 678899999999999885544444444444444433
No 117
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.39 E-value=4e-09 Score=128.65 Aligned_cols=175 Identities=13% Similarity=0.028 Sum_probs=122.8
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---H
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF---I 619 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~ 619 (904)
..+|.++...|++++|...+.+.+..+. ... +....++..+|.++...|++++|...+.++..+.+.. .
T Consensus 577 ~~la~~~~~~G~~~~A~~~~~~al~~~~-------~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~ 649 (903)
T PRK04841 577 RIRAQLLWEWARLDEAEQCARKGLEVLS-------NYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHS 649 (903)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHhhh-------ccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccH
Confidence 4567778888999999999988333211 011 2235677789999999999999999999998763321 1
Q ss_pred HHHH----HHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-
Q psy17306 620 DGYI----NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD- 694 (904)
Q Consensus 620 ~a~~----~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~- 694 (904)
.... .....+...|+.+.|...+.......+ .........+..+|.++...|++++|+..+++++...
T Consensus 650 ~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~-------~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~ 722 (903)
T PRK04841 650 DWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF-------ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENAR 722 (903)
T ss_pred hHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC-------ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1111 122445567899999885544332110 0000012235689999999999999999999999872
Q ss_pred -----cCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChh
Q psy17306 695 -----PNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDE 732 (904)
Q Consensus 695 -----p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 732 (904)
+....++..+|.++...|+.++|...++++++......
T Consensus 723 ~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 723 SLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 23356788999999999999999999999998775443
No 118
>KOG4340|consensus
Probab=99.39 E-value=3.9e-10 Score=106.03 Aligned_cols=188 Identities=14% Similarity=0.025 Sum_probs=156.8
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHH
Q psy17306 18 EYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALE 97 (904)
Q Consensus 18 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 97 (904)
+.+..+|..|++++..-.+..|.+...+..+|.||+...+|..|..+|++.-...|......+..+..+++.+.+..|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHH
Q psy17306 98 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLL 177 (904)
Q Consensus 98 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~ 177 (904)
........+.-...+...-+.+.+..+++..+....++.-. .+......+.|-+..+.|+++.|.+-|
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkF---------- 167 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKF---------- 167 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHH----------
Confidence 88776543222234455556677778888888777665421 245677788888888889988888877
Q ss_pred HHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHH
Q psy17306 178 KALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENY 257 (904)
Q Consensus 178 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 257 (904)
+.+++...-.+..-++++.++++.|+++.|+++.
T Consensus 168 ----------------------------------------------qaAlqvsGyqpllAYniALaHy~~~qyasALk~i 201 (459)
T KOG4340|consen 168 ----------------------------------------------QAALQVSGYQPLLAYNLALAHYSSRQYASALKHI 201 (459)
T ss_pred ----------------------------------------------HHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHH
Confidence 5677777777888899999999999999999988
Q ss_pred HHHHhh
Q psy17306 258 RHAVRL 263 (904)
Q Consensus 258 ~~al~~ 263 (904)
...++.
T Consensus 202 SEIieR 207 (459)
T KOG4340|consen 202 SEIIER 207 (459)
T ss_pred HHHHHh
Confidence 877764
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.37 E-value=2.6e-11 Score=136.11 Aligned_cols=173 Identities=13% Similarity=0.086 Sum_probs=151.5
Q ss_pred HHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHH
Q psy17306 496 LDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFST 575 (904)
Q Consensus 496 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~ 575 (904)
+..+..+....+...+..+.+.......+..|.+++.. .++|.+....|.+++|...++.
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~La~i~~~~g~~~ea~~~l~~---------- 111 (694)
T PRK15179 52 LQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQ----------VLVARALEAAHRSDEGLAVWRG---------- 111 (694)
T ss_pred HHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHH----------HHHHHHHHHcCCcHHHHHHHHH----------
Confidence 33444444555555666666666666667777776666 9999999999999999999999
Q ss_pred HHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHH
Q psy17306 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLK 655 (904)
Q Consensus 576 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 655 (904)
+++..|++..++.+++.++.+.+++++|+..+++++..+|+++.+++.+|.++...|++++|+. .|++
T Consensus 112 -~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~-----------~y~~ 179 (694)
T PRK15179 112 -IHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADA-----------CFER 179 (694)
T ss_pred -HHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHH-----------HHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 7777
Q ss_pred hhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHH
Q psy17306 656 AIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700 (904)
Q Consensus 656 ~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 700 (904)
++..+|+++.++.++|.++...|+.++|...|++|++....-...
T Consensus 180 ~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 180 LSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 778899999999999999999999999999999999996544444
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.37 E-value=2.2e-11 Score=106.28 Aligned_cols=114 Identities=12% Similarity=0.049 Sum_probs=104.3
Q ss_pred HHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHH
Q psy17306 577 AIKQN-PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLK 655 (904)
Q Consensus 577 al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 655 (904)
...+. ++..+..+.+|..+...|++++|...|+-+..++|.++..|++||.++..+|++++|+. .|.+
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~-----------aY~~ 94 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIY-----------AYGR 94 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHH-----------HHHH
Confidence 44466 77889999999999999999999999999999999999999999999999999999999 8888
Q ss_pred hhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---cCcHHHH
Q psy17306 656 AIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD---PNFLDAY 701 (904)
Q Consensus 656 ~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~ 701 (904)
++.++|+++.+++++|.|+...|+.+.|.+.|+.|+... |.+....
T Consensus 95 A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~ 143 (157)
T PRK15363 95 AAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILR 143 (157)
T ss_pred HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHH
Confidence 889999999999999999999999999999999999985 4444433
No 121
>KOG1128|consensus
Probab=99.37 E-value=2.1e-11 Score=128.80 Aligned_cols=228 Identities=18% Similarity=0.150 Sum_probs=205.4
Q ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHH
Q psy17306 3 DIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNL 82 (904)
Q Consensus 3 ~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 82 (904)
-+|..+..-..+|..+...|-...|+.+|++. +.|-....||...|+..+|..+..+-++ .|+++..|..+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~L 463 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLL 463 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHh
Confidence 34666777888999999999999999999986 5677788999999999999999999999 66779999999
Q ss_pred HHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHH
Q psy17306 83 GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDE 162 (904)
Q Consensus 83 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 162 (904)
|.+.....-|++|.+.++.. +..+...+|......+++.++.++++..++++|-....|+.+|-+..+.+++..
T Consensus 464 GDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 99988887778887777663 345777788888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHH
Q psy17306 163 AKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242 (904)
Q Consensus 163 A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~ 242 (904)
|...| ...+..+|++.++|.+++.
T Consensus 538 av~aF--------------------------------------------------------~rcvtL~Pd~~eaWnNls~ 561 (777)
T KOG1128|consen 538 AVKAF--------------------------------------------------------HRCVTLEPDNAEAWNNLST 561 (777)
T ss_pred HHHHH--------------------------------------------------------HHHhhcCCCchhhhhhhhH
Confidence 99888 6889999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
.|.+.++-.+|...++++++.+-++...|.+...+....|.+++|++.|.+.+.+....
T Consensus 562 ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 562 AYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred HHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999876655
No 122
>KOG1128|consensus
Probab=99.37 E-value=2.3e-11 Score=128.53 Aligned_cols=131 Identities=17% Similarity=0.218 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHH
Q psy17306 587 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVA 666 (904)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a 666 (904)
+...+|......++++++..+++..++++|-....|+++|.+..+.++++.|.+ +|..++.++|++..+
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~-----------aF~rcvtL~Pd~~ea 555 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK-----------AFHRCVTLEPDNAEA 555 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH-----------HHHHHhhcCCCchhh
Confidence 444445544555566666666666666666666666666666666666666666 555555555666666
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhccc
Q psy17306 667 WSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFM 728 (904)
Q Consensus 667 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~ 728 (904)
|+|++.+|.+.|+..+|-..+++|++.+-++..+|-|.-.+....|.+++|++.+.+.++..
T Consensus 556 WnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 556 WNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 66666666666666666666666666655555666666666666666666666665555443
No 123
>KOG0553|consensus
Probab=99.36 E-value=1.4e-11 Score=117.15 Aligned_cols=120 Identities=24% Similarity=0.347 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 121 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 121 (904)
++-+..-|.-++..++|.+|+..|.+||+++|+++..|.+++.+|.++|.++.|++.++.++.++|....+|..+|.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 45667778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChH
Q psy17306 122 AAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLD 161 (904)
Q Consensus 122 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 161 (904)
.+|++++|++.|+++++++|++...+..|..+-...+...
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999888888888777777665
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.29 E-value=1.2e-09 Score=111.02 Aligned_cols=130 Identities=19% Similarity=0.159 Sum_probs=123.8
Q ss_pred CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy17306 38 ETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLA 117 (904)
Q Consensus 38 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 117 (904)
.|....+++..+..++..|++++|+..++..+...|+|+..+...+.++...++..+|.+.+++++.++|..+...+.+|
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 37888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 118 AALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 118 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
.++.+.|++.+|+..++..+..+|+++..|..|++.|..+|+..++....
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 99999999999999999999999999999999999999999987775544
No 125
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.22 E-value=1.3e-09 Score=109.88 Aligned_cols=78 Identities=21% Similarity=0.113 Sum_probs=65.3
Q ss_pred HHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCc
Q psy17306 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM-EQAVQAYVTALQYNPLL 301 (904)
Q Consensus 224 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~ 301 (904)
+......+.++..+..++.+++.+|+|++|...+++++..+|.+++++.+++.+...+|+. +.+.+++.+....+|++
T Consensus 191 ~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 191 EELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 4666666778889999999999999999999999999999999999999999999999998 66777888888889988
No 126
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.20 E-value=2.8e-10 Score=119.57 Aligned_cols=114 Identities=23% Similarity=0.200 Sum_probs=99.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHH
Q psy17306 588 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAW 667 (904)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~ 667 (904)
+...|..+...|++++|+..|+++++++|+++.++.++|.++..+|++++|+. .+.+++.++|+++.++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~-----------~~~~Al~l~P~~~~a~ 73 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVA-----------DANKAIELDPSLAKAY 73 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCcCCHHHH
Confidence 45667888888999999999999999999999999999999999999999999 6777777888888999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhc
Q psy17306 668 SNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEAR 712 (904)
Q Consensus 668 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 712 (904)
+.+|.++..+|++++|+..|+++++++|+++.+...++.|...+.
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888888866663
No 127
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.20 E-value=2.9e-10 Score=119.49 Aligned_cols=110 Identities=17% Similarity=0.139 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 90 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 90 (904)
+...|..++..|+|++|+..|.++++.+|.++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy17306 91 QLQEALENYRHAVRLKPDFIDGYINLAAAL 120 (904)
Q Consensus 91 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 120 (904)
++++|+..|++++.++|+++.+...++.|.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 555555555555555555555544444443
No 128
>KOG2053|consensus
Probab=99.19 E-value=5.6e-06 Score=90.71 Aligned_cols=235 Identities=16% Similarity=0.088 Sum_probs=174.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHH
Q psy17306 17 REYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAL 96 (904)
Q Consensus 17 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 96 (904)
-....+++.+|...+.++++..|+...+....|.++.+.|+.++|..+++..-...+++..++..+-.||..+|++++|.
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 34678999999999999999999999999999999999999999998888877778888889999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHHcCChHHHHH-HHHHHHhhH
Q psy17306 97 ENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYC-VRSDLGNLLKALGRLDEAKD-LYCVRSDLG 174 (904)
Q Consensus 97 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~-~~~~~~~l~ 174 (904)
.+|++++..+|. .+.+..+-.+|.+-+.|.+-.+.--+..+..|+++- .|..+..+.......++... .+ ..
T Consensus 98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~---l~-- 171 (932)
T KOG2053|consen 98 HLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPIL---LA-- 171 (932)
T ss_pred HHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchh---HH--
Confidence 999999999999 888888889999999988877777677777888764 44455555555544444433 11 00
Q ss_pred HHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcC-ch--hHHHHHHHHHHHHHhCCHH
Q psy17306 175 NLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQN-PL--LAEAYSNLGNVYKERGQLQ 251 (904)
Q Consensus 175 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~--~~~~~~~lg~~~~~~g~~~ 251 (904)
-|.... ++.+... +- .++. ...-.++..+|+++
T Consensus 172 ----------LA~~m~---------------------------------~~~l~~~gk~~s~aE~-~Lyl~iL~~~~k~~ 207 (932)
T KOG2053|consen 172 ----------LAEKMV---------------------------------QKLLEKKGKIESEAEI-ILYLLILELQGKYQ 207 (932)
T ss_pred ----------HHHHHH---------------------------------HHHhccCCccchHHHH-HHHHHHHHhcccHH
Confidence 111111 1222222 11 1122 22234566788999
Q ss_pred HHHHHHHH-HHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 252 EALENYRH-AVRL-KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 252 ~A~~~~~~-al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
+|...+.. ..+. .+.+.......+..+...+++.+-.+...+++...+++
T Consensus 208 eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 208 EALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 99999843 3333 34444555566778888999999999999999988876
No 129
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.16 E-value=1.1e-09 Score=110.53 Aligned_cols=179 Identities=13% Similarity=0.039 Sum_probs=138.4
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
...|.++...|++++|+..+.+ . .+.++......++...++++.|.+.++.+-+.+.+..-+..
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~-----------~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qL 169 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHK-----------G-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQL 169 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTT-----------T-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHc-----------c-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 5566778889999999987776 2 45677777888999999999999999999999988877777
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHH
Q psy17306 624 NLAAALVAAG--DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAY 701 (904)
Q Consensus 624 ~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 701 (904)
..+++....| ++.+|.-.|+ +.....|.++..++.++.++..+|++++|.+.+++++..+|++++++
T Consensus 170 a~awv~l~~g~e~~~~A~y~f~-----------El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 170 AEAWVNLATGGEKYQDAFYIFE-----------ELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHH-----------HHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred HHHHHHHHhCchhHHHHHHHHH-----------HHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 7788887777 5899999555 44444566788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcch-hHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHH
Q psy17306 702 INLGNVLKEARIF-DRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKFE 753 (904)
Q Consensus 702 ~~la~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 753 (904)
.|++.+...+|+. +.+.+++.+.....|+.+-+ .....+...++....
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~----~~~~~~~~~FD~~~~ 287 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV----KDLAEKEAEFDRAVA 287 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHH
Confidence 9999999999999 55677777777777664433 333344444554443
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.12 E-value=8.2e-09 Score=105.16 Aligned_cols=139 Identities=17% Similarity=0.024 Sum_probs=123.7
Q ss_pred CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcC
Q psy17306 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETR 660 (904)
Q Consensus 581 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~ 660 (904)
+|....++|..+..+...|++++|+..++..+...|+|+..+...+.++...++..+|.+ .+++++..+
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e-----------~~~kal~l~ 370 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIE-----------RLKKALALD 370 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH-----------HHHHHHhcC
Confidence 467788999999999999999999999999999999999999999999999999999999 777778888
Q ss_pred cchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCC
Q psy17306 661 PDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 661 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 730 (904)
|+.+..+.++|.++.+.|++.+|+..++..+..+|+++..|..||..|..+|+..+|...+-........
T Consensus 371 P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 371 PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGR 440 (484)
T ss_pred CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCC
Confidence 9889999999999999999999999999999999999999999999999999988888877666555443
No 131
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.10 E-value=3.3e-08 Score=97.37 Aligned_cols=179 Identities=16% Similarity=0.083 Sum_probs=135.3
Q ss_pred CCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHH---HHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC---HHHH
Q psy17306 40 NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA---YSNLGNVYKERGQLQEALENYRHAVRLKPDF---IDGY 113 (904)
Q Consensus 40 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 113 (904)
..+..++..|..++..|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..|++.++.+|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 357778888999999999999999999999998876554 4889999999999999999999999998876 4578
Q ss_pred HHHHHHHHHcC---------------C---HHHHHHHHHHHHhcCCChhh---HHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17306 114 INLAAALVAAG---------------D---MEQAVQAYVTALQYNPDLYC---VRSDLGNLLKALGRLDEAKDLYCVRSD 172 (904)
Q Consensus 114 ~~la~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (904)
+.+|.++...+ | ..+|+..|++.++..|++.- +...+..+.
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~------------------ 171 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLK------------------ 171 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH------------------
Confidence 88888765443 1 24678888899999888642 111111111
Q ss_pred hHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHH
Q psy17306 173 LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 252 (904)
Q Consensus 173 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 252 (904)
..-+.--+.+|..|.+.|.|..
T Consensus 172 ----------------------------------------------------------~~la~~e~~ia~~Y~~~~~y~A 193 (243)
T PRK10866 172 ----------------------------------------------------------DRLAKYELSVAEYYTKRGAYVA 193 (243)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHHHHcCchHH
Confidence 1113334567888888889988
Q ss_pred HHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17306 253 ALENYRHAVRLKPDF---IDGYINLAAALVAAGDMEQAVQAYVTA 294 (904)
Q Consensus 253 A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a 294 (904)
|+.-++.+++..|+. .+++..++.+|..+|..++|..+....
T Consensus 194 A~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 194 VVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 999999988887765 468888888888899888887766543
No 132
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.09 E-value=9.8e-09 Score=98.88 Aligned_cols=158 Identities=20% Similarity=0.203 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc---HHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNN---TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL---AEAYS 80 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 80 (904)
.+..++..|..++..|+|.+|+..|++++...|.+ +.+.+.+|.+++..|+++.|+..+++.++..|++ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46789999999999999999999999999998875 6789999999999999999999999999998874 56899
Q ss_pred HHHHHHHHhC-----------cHHHHHHHHHHHHhcCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHH
Q psy17306 81 NLGNVYKERG-----------QLQEALENYRHAVRLKPDFIDG-----------------YINLAAALVAAGDMEQAVQA 132 (904)
Q Consensus 81 ~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~-----------------~~~la~~~~~~g~~~~A~~~ 132 (904)
.+|.+++.+. ...+|+..|+..+...|++..+ -+.+|..|.+.|.+..|+..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 9999977653 3458999999999999987432 24568889999999999999
Q ss_pred HHHHHhcCCChh---hHHHHHHHHHHHcCChHHHH
Q psy17306 133 YVTALQYNPDLY---CVRSDLGNLLKALGRLDEAK 164 (904)
Q Consensus 133 ~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~ 164 (904)
++.+++..|+.. .++..++..|..+|..+.|.
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999874 67888899999999887543
No 133
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.09 E-value=1.7e-08 Score=99.41 Aligned_cols=161 Identities=16% Similarity=0.075 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHhhcCHHHHHHHHHHHHhcCccc---HHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGV---LLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL---AEAYS 80 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 80 (904)
....++..|..++..|+|++|+..|++++...|..+.+ .+.+|.+++..+++++|+..+++.++.+|++ +.+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 45678999999999999999999999999999987654 4899999999999999999999999998764 67899
Q ss_pred HHHHHHHHhC------------------cHHHHHHHHHHHHhcCCCCHH---H--------------HHHHHHHHHHcCC
Q psy17306 81 NLGNVYKERG------------------QLQEALENYRHAVRLKPDFID---G--------------YINLAAALVAAGD 125 (904)
Q Consensus 81 ~la~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~---~--------------~~~la~~~~~~g~ 125 (904)
.+|.++...+ ...+|+..|++.++..|+..- + -+.+|..|.+.|.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 9998865543 135788999999999998732 1 2356788999999
Q ss_pred HHHHHHHHHHHHhcCCCh---hhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 126 MEQAVQAYVTALQYNPDL---YCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 126 ~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
|..|+.-++.+++..|+. .+++..++..|...|..++|....
T Consensus 191 y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 191 YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 999999999999998876 578889999999999999987765
No 134
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=8.2e-09 Score=99.68 Aligned_cols=122 Identities=18% Similarity=0.082 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC---cHHHHHHHHH
Q psy17306 24 YESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG---QLQEALENYR 100 (904)
Q Consensus 24 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~ 100 (904)
.+.-+.-++.-+..+|++++.|..||.+|+..|+++.|...|.+++++.|+++..+..+|.+++.+. ...++...|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 5566777788889999999999999999999999999999999999999999999999999987764 4678999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhh
Q psy17306 101 HAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYC 145 (904)
Q Consensus 101 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 145 (904)
+++..+|.+..+...+|..++..|+|.+|+..|+..+...|.+..
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999999887643
No 135
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.05 E-value=9.9e-09 Score=93.13 Aligned_cols=131 Identities=24% Similarity=0.223 Sum_probs=112.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc---HHHH
Q psy17306 6 QLGIGLLELAHREYQAGDYESAERHCMQLWRQETNN---TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL---AEAY 79 (904)
Q Consensus 6 ~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 79 (904)
..+...+..+......++...+...++.++..+|+. ..+.+.+|.+++..|++++|...|+.++...|+. ..+.
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 345667788888888999999999999999999988 5678889999999999999999999999977553 4688
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 80 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 137 (904)
Q Consensus 80 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 137 (904)
+.+|.++...|++++|+..++. +...+..+.++..+|.++...|++++|+..|++++
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8999999999999999999976 34445557788899999999999999999999875
No 136
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=8.2e-09 Score=99.68 Aligned_cols=130 Identities=18% Similarity=0.197 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCC-
Q psy17306 600 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG- 678 (904)
Q Consensus 600 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g- 678 (904)
..+.-+.-++.-+..+|++..-|..||.+|+.+|++..|.. .|.+++++.|+++..+..+|.++..+.
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~-----------AY~~A~rL~g~n~~~~~g~aeaL~~~a~ 205 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALL-----------AYRNALRLAGDNPEILLGLAEALYYQAG 205 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 35566667777788888888888888888888888888888 777777788888888888888776653
Q ss_pred --CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHH
Q psy17306 679 --EIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILER 740 (904)
Q Consensus 679 --~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 740 (904)
...+|...|++++..||.++.+.+.||..++..|++.+|...|+..+++.|.+..-...+.+
T Consensus 206 ~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 206 QQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred CcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 35688889999999999999999999999999999999999999999888765544444333
No 137
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.04 E-value=4.6e-08 Score=94.24 Aligned_cols=175 Identities=18% Similarity=0.221 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCH---HHHH
Q psy17306 41 NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI---DGYI 114 (904)
Q Consensus 41 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 114 (904)
.+..++..|..++..|+|.+|+..|++++...|. ...+.+.+|.+++..|++++|+..|++.+...|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 4678889999999999999999999999988765 467889999999999999999999999999988764 5788
Q ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCH
Q psy17306 115 NLAAALVAAG-----------DMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRL 183 (904)
Q Consensus 115 ~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~ 183 (904)
.+|.++.... ...+|+..|+..+...|++.-+-. |...+
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~--------------A~~~l---------------- 133 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE--------------AKKRL---------------- 133 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH--------------HHHHH----------------
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH--------------HHHHH----------------
Confidence 8888876543 234788888888888888643211 11100
Q ss_pred HHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy17306 184 DEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL 263 (904)
Q Consensus 184 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 263 (904)
..+...-+.--+.+|..|.+.|.|..|+..++.+++.
T Consensus 134 -------------------------------------------~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 134 -------------------------------------------AELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0111112344566889999999999999999999999
Q ss_pred CCCCH---HHHHHHHHHHHHcCCHHHHH
Q psy17306 264 KPDFI---DGYINLAAALVAAGDMEQAV 288 (904)
Q Consensus 264 ~p~~~---~~~~~la~~~~~~g~~~~A~ 288 (904)
.|+.. .++..++.++..+|..+.|.
T Consensus 171 yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 171 YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88875 57888899999999888543
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.03 E-value=4.7e-09 Score=92.37 Aligned_cols=106 Identities=19% Similarity=0.253 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCc
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP 661 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p 661 (904)
+..++.+|..+...|++++|+..|.++++.+|++ +.+++.+|.++...|++++|+..|++++ ...|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------~~~p 70 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVV-----------KKYP 70 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHH-----------HHCC
Confidence 3567778888888888888888888888877765 4577788888888888888888444433 3333
Q ss_pred c---hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHH
Q psy17306 662 D---FAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAY 701 (904)
Q Consensus 662 ~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 701 (904)
+ .+.+++.+|.++...|++++|+..++++++..|++..+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 3 356778888888888888888888888888888776544
No 139
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.02 E-value=5e-09 Score=98.36 Aligned_cols=99 Identities=25% Similarity=0.352 Sum_probs=84.2
Q ss_pred CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhh
Q psy17306 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAI 657 (904)
Q Consensus 581 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l 657 (904)
++..+.+++.+|.++...|++++|+.+|+++++..|+. ..++.++|.++...|++++|+. .+.+++
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-----------~~~~al 99 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALE-----------YYHQAL 99 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHH
Confidence 44567789999999999999999999999999987663 4689999999999999999999 666666
Q ss_pred hcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy17306 658 ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKA 690 (904)
Q Consensus 658 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 690 (904)
...|+++.++..+|.++...|+...|...+.++
T Consensus 100 ~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A 132 (172)
T PRK02603 100 ELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEA 132 (172)
T ss_pred HhCcccHHHHHHHHHHHHHcCChHhHhhCHHHH
Confidence 778888999999999999999865555444444
No 140
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.01 E-value=7.2e-09 Score=91.16 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc---HHHHHHH
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNN---TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL---AEAYSNL 82 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 82 (904)
+.++..|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|++++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 345555555555555555555555555555543 3455555555555555555555555555554442 3455555
Q ss_pred HHHHHHhCcHHHHHHHHHHHHhcCCCCHH
Q psy17306 83 GNVYKERGQLQEALENYRHAVRLKPDFID 111 (904)
Q Consensus 83 a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 111 (904)
|.++...|++++|+..+++++...|++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 55555555555555555555555555443
No 141
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.00 E-value=1e-08 Score=96.04 Aligned_cols=110 Identities=25% Similarity=0.346 Sum_probs=86.0
Q ss_pred HHHhCCc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChh
Q psy17306 577 AIKQNPL--LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPS 651 (904)
Q Consensus 577 al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 651 (904)
.+..++. ...+++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+.
T Consensus 25 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~----------- 93 (168)
T CHL00033 25 ILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE----------- 93 (168)
T ss_pred hccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH-----------
Confidence 3334443 36788999999999999999999999999987763 4589999999999999999999
Q ss_pred hHHHhhhcCcchHHHHHHHHHHHH-------hCCCHH-------HHHHHHHHHHhcCcCc
Q psy17306 652 CYLKAIETRPDFAVAWSNLGCVFN-------AQGEIW-------LAIHHFEKAVSLDPNF 697 (904)
Q Consensus 652 ~~~~~l~~~p~~~~a~~~lg~~~~-------~~g~~~-------~A~~~~~~al~~~p~~ 697 (904)
.+.+++..+|.....+.++|.++. ..|+++ +|+..|++++..+|.+
T Consensus 94 ~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 94 YYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 555666667777888888888888 666665 4455555556666644
No 142
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.00 E-value=1.3e-09 Score=84.56 Aligned_cols=67 Identities=37% Similarity=0.450 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhc-chhHHHHHHHHhhcccC
Q psy17306 663 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEAR-IFDRANTLFYVSSYFMI 729 (904)
Q Consensus 663 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~A~~~~~~a~~~~~ 729 (904)
++.+|..+|.++...|++++|+.+|+++++++|+++.+++++|.++..+| ++++|++.|+++++..|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57899999999999999999999999999999999999999999999999 89999999999998765
No 143
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.00 E-value=1.6e-08 Score=94.94 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy17306 40 NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 116 (904)
Q Consensus 40 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 116 (904)
..+.+++.+|..+...|++++|+.+|+++++..|+ ...++..+|.++...|++++|+..+++++...|.+..++..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 34556677777777777777777777777765543 245677777777777777777777777777777777777777
Q ss_pred HHHHHHcCC--------------HHHHHHHHHHHHhcCCCh
Q psy17306 117 AAALVAAGD--------------MEQAVQAYVTALQYNPDL 143 (904)
Q Consensus 117 a~~~~~~g~--------------~~~A~~~~~~al~~~p~~ 143 (904)
|.++...|+ +++|++++++++..+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 777766665 677888888888888876
No 144
>KOG0543|consensus
Probab=98.99 E-value=1e-08 Score=102.56 Aligned_cols=119 Identities=27% Similarity=0.317 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----c-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPD----F-----------IDGYINLAAALVAAGDMEQAVQAYVTALQYN 649 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 649 (904)
+...-..|..+++.|+|..|...|++++..-+. + ..++.|++.|+.++++|.+|+.
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~--------- 278 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIE--------- 278 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHH---------
Confidence 345567889999999999999999999876321 1 1244445555555555555554
Q ss_pred hhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcch
Q psy17306 650 PSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIF 714 (904)
Q Consensus 650 ~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 714 (904)
.+.++++.+|+++.++|..|.++..+|+++.|+..|++|++++|+|-.+...|..+..+..++
T Consensus 279 --~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 279 --SCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred --HHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 444444444555555555555555555555555555555555555544444444444444433
No 145
>KOG3617|consensus
Probab=98.99 E-value=9.8e-06 Score=87.37 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAV 691 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al 691 (904)
...+-.+|.++.++|.|..|.+-|.+|=
T Consensus 1145 ~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1145 KQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 4578899999999999999988888763
No 146
>PRK11906 transcriptional regulator; Provisional
Probab=98.99 E-value=3.3e-08 Score=101.65 Aligned_cols=158 Identities=15% Similarity=0.057 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHhh---------cCHHHHHHHHHHHHhcCcc
Q psy17306 10 GLLELAHREYQAGD---YESAERHCMQLW---RQETNNTGVLLLLSSIHFQC---------RKLDKSAHFSTLAIKQNPL 74 (904)
Q Consensus 10 ~l~~~a~~~~~~g~---~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~ 74 (904)
.++.+|...+..+. ...|+.+|.+++ ..+|..+.++..++.|++.. .+..+|.+..+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 45778887776665 467889999999 99999999999999998855 2456889999999999999
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHH-
Q psy17306 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNL- 153 (904)
Q Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~- 153 (904)
++.++..+|.+....++++.|...|++++.++|+.+.+++..|.+....|+.++|++.++++++++|....+-...-.+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~ 416 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVD 416 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875443322222
Q ss_pred HHHcCChHHHHHHH
Q psy17306 154 LKALGRLDEAKDLY 167 (904)
Q Consensus 154 ~~~~~~~~~A~~~~ 167 (904)
.+-....++|+.+|
T Consensus 417 ~~~~~~~~~~~~~~ 430 (458)
T PRK11906 417 MYVPNPLKNNIKLY 430 (458)
T ss_pred HHcCCchhhhHHHH
Confidence 33345566666666
No 147
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.98 E-value=1.9e-09 Score=83.49 Aligned_cols=67 Identities=39% Similarity=0.575 Sum_probs=63.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhcCc
Q psy17306 618 FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG-EIWLAIHHFEKAVSLDP 695 (904)
Q Consensus 618 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~p 695 (904)
++.+|..+|.++...|++++|+. .|.++++.+|+++.+|+++|.++..+| ++++|++.|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~-----------~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIE-----------YFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHH-----------HHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57899999999999999999999 777778889999999999999999999 79999999999999998
No 148
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.98 E-value=1.2e-08 Score=95.43 Aligned_cols=127 Identities=16% Similarity=0.152 Sum_probs=104.7
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHhCcH
Q psy17306 18 EYQAGDYESAERHCMQLWRQETNN--TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQL 92 (904)
Q Consensus 18 ~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~ 92 (904)
++-.+.|..+...+...++..+.. ...++.+|.++...|++++|+..|++++.+.|+ .+.++..+|.++...|++
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~ 88 (168)
T CHL00033 9 NFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH 88 (168)
T ss_pred cccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence 444556777778887776666654 677899999999999999999999999988665 346899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHhcCCChh
Q psy17306 93 QEALENYRHAVRLKPDFIDGYINLAAALV-------AAGDME-------QAVQAYVTALQYNPDLY 144 (904)
Q Consensus 93 ~~A~~~~~~al~~~p~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~ 144 (904)
++|+..+++++.++|.....+..+|.++. ..|+++ +|+..|++++..+|.+.
T Consensus 89 ~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 89 TKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999999999999999999989998888 777766 55666667777787653
No 149
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.95 E-value=1.1e-07 Score=85.67 Aligned_cols=102 Identities=18% Similarity=0.202 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy17306 43 GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 122 (904)
Q Consensus 43 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 122 (904)
..++..|..|-+.|-+.-|.--|.+++.+.|.-+.++..+|..+...|+|+.|.+.|...++++|.+.-++.+.|..++-
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY 145 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 145 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCChh
Q psy17306 123 AGDMEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 123 ~g~~~~A~~~~~~al~~~p~~~ 144 (904)
-|++.-|.+.+.+-.+.+|++|
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCCh
Confidence 5555555555555555555543
No 150
>KOG0543|consensus
Probab=98.94 E-value=1.3e-08 Score=101.73 Aligned_cols=129 Identities=20% Similarity=0.178 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcc--------hHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy17306 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD--------FAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691 (904)
Q Consensus 620 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al 691 (904)
...-..|..+++.|+|..|...|++++..-. ..-..+++ ...++.|++.|+.++++|.+|+...+++|
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~----~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLE----YRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhh----ccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3445678999999999999999999887432 11111111 23578999999999999999999999999
Q ss_pred hcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHH
Q psy17306 692 SLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKF 752 (904)
Q Consensus 692 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 752 (904)
.++|+|+.++|..|.++..+|+++.|+..|++++...|++..+..-+..|..+..+++.+-
T Consensus 285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ke 345 (397)
T KOG0543|consen 285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKE 345 (397)
T ss_pred hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988877663
No 151
>PRK11906 transcriptional regulator; Provisional
Probab=98.94 E-value=4.3e-08 Score=100.82 Aligned_cols=151 Identities=17% Similarity=0.044 Sum_probs=127.3
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHH---HhCCchHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 556 IPITLTFECRKLDKSAHFSTLAI---KQNPLLAEAYSNLGNVYKER---------GQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 556 ~~~A~~~~~~~l~~a~~~~~~al---~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
...|+.+|.+ ++ ..+|+.+.++-.++.|+... ....+|.+..+++++++|.++.++.
T Consensus 274 ~~~Al~lf~r-----------a~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~ 342 (458)
T PRK11906 274 IYRAMTIFDR-----------LQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILA 342 (458)
T ss_pred HHHHHHHHHH-----------HhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4556666666 99 89999999999999998654 2456899999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy17306 624 NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYIN 703 (904)
Q Consensus 624 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 703 (904)
.+|.+....++++.|+. .|++++.++|+.+.+|+..|+++...|+.++|++.++++++++|....+-.-
T Consensus 343 ~~g~~~~~~~~~~~a~~-----------~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~ 411 (458)
T PRK11906 343 IMGLITGLSGQAKVSHI-----------LFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVI 411 (458)
T ss_pred HHHHHHHhhcchhhHHH-----------HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHH
Confidence 99999999999999999 7888888999999999999999999999999999999999999987655443
Q ss_pred HHHH-HHHhcchhHHHHHHHHhhccc
Q psy17306 704 LGNV-LKEARIFDRANTLFYVSSYFM 728 (904)
Q Consensus 704 la~~-~~~~g~~~~A~~~~~~a~~~~ 728 (904)
--.+ ..-....++|+..|.+--++.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (458)
T PRK11906 412 KECVDMYVPNPLKNNIKLYYKETESE 437 (458)
T ss_pred HHHHHHHcCCchhhhHHHHhhccccc
Confidence 3333 334456788998887765544
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.93 E-value=5.6e-08 Score=88.19 Aligned_cols=119 Identities=20% Similarity=0.172 Sum_probs=98.5
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcch---HHHHH
Q psy17306 595 YKERGQLQEALENYRHAVRLKPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDF---AVAWS 668 (904)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~---~~a~~ 668 (904)
....++...+...++..++.+|+. ..+.+.+|.++...|++++|+..|+.++. ..|+. +.+.+
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~-----------~~~d~~l~~~a~l 89 (145)
T PF09976_consen 21 ALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA-----------NAPDPELKPLARL 89 (145)
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----------hCCCHHHHHHHHH
Confidence 336789999999999999999988 45788899999999999999996655554 33332 56788
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 669 NLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 669 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
.||.++...|++++|+..++. +.-.+-.+.++..+|.++...|++++|+..|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999999999976 34455568889999999999999999999999874
No 153
>PRK15331 chaperone protein SicA; Provisional
Probab=98.93 E-value=2e-08 Score=88.18 Aligned_cols=108 Identities=13% Similarity=0.049 Sum_probs=98.9
Q ss_pred hhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHH
Q psy17306 36 RQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 115 (904)
Q Consensus 36 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 115 (904)
...++..+..+..|.-++..|++++|...|+-....+|.++..++.||.|+..+++|++|+..|..+..++++++.+.+.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 34555677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCChh
Q psy17306 116 LAAALVAAGDMEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 116 la~~~~~~g~~~~A~~~~~~al~~~p~~~ 144 (904)
.|.|++.+|+.+.|+.+|..++. .|.+.
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 99999999999999999999998 45544
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.93 E-value=3.9e-09 Score=85.35 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=43.4
Q ss_pred cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHH
Q psy17306 21 AGDYESAERHCMQLWRQETN--NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALEN 98 (904)
Q Consensus 21 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 98 (904)
+|+|+.|+.+++++++.+|. +...++.+|.+++..|++++|+.++++ .+.+|.+....+.+|.++..+|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45555555555555555553 234444455555555555555555555 445555555555555555555555555555
Q ss_pred HHH
Q psy17306 99 YRH 101 (904)
Q Consensus 99 ~~~ 101 (904)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.92 E-value=1.2e-08 Score=85.81 Aligned_cols=97 Identities=45% Similarity=0.657 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHH
Q psy17306 588 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAW 667 (904)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~ 667 (904)
++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+. .+.+++...|.+..++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-----------~~~~~~~~~~~~~~~~ 71 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALE-----------DYEKALELDPDNAKAY 71 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhCCCcchhHH
Confidence 44555555555555555555555555555555555555555555555555555 3333333444444555
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc
Q psy17306 668 SNLGCVFNAQGEIWLAIHHFEKAVSLDP 695 (904)
Q Consensus 668 ~~lg~~~~~~g~~~~A~~~~~~al~~~p 695 (904)
..+|.++...|++++|...+.+++..+|
T Consensus 72 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 72 YNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 5555555555555555555555555444
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.92 E-value=1.5e-08 Score=85.21 Aligned_cols=97 Identities=35% Similarity=0.577 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy17306 45 LLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 124 (904)
Q Consensus 45 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 124 (904)
++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..|++++...|.+..++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHhcCC
Q psy17306 125 DMEQAVQAYVTALQYNP 141 (904)
Q Consensus 125 ~~~~A~~~~~~al~~~p 141 (904)
++++|...+.++++.+|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 55555555555555444
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.92 E-value=4.4e-08 Score=107.19 Aligned_cols=138 Identities=20% Similarity=0.182 Sum_probs=118.8
Q ss_pred hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc--------CHHHHHHHHHHHHhc--Cc
Q psy17306 7 LGIGLLELAHREYQAGD---YESAERHCMQLWRQETNNTGVLLLLSSIHFQCR--------KLDKSAHFSTLAIKQ--NP 73 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~--~p 73 (904)
.+-.++.+|..++..++ +..|+.+|+++++.+|+++.++..++.++.... +...+.....+++.. +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 45567888888887666 889999999999999999999998888776542 345666667776664 77
Q ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhh
Q psy17306 74 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYC 145 (904)
Q Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 145 (904)
..+.++..+|..+...|++++|...+++++.++|+ ..+|..+|.++...|++++|+..|++|+.++|.++.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 77889999999999999999999999999999994 789999999999999999999999999999999874
No 158
>KOG3617|consensus
Probab=98.92 E-value=1.8e-06 Score=92.81 Aligned_cols=64 Identities=13% Similarity=0.079 Sum_probs=48.7
Q ss_pred chHHHHHHHHHHHHhCCCHHHHHHHHHH------HHhc----------------------CcC---cHHHHHHHHHHHHH
Q psy17306 662 DFAVAWSNLGCVFNAQGEIWLAIHHFEK------AVSL----------------------DPN---FLDAYINLGNVLKE 710 (904)
Q Consensus 662 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~------al~~----------------------~p~---~~~a~~~la~~~~~ 710 (904)
.+|..+..-+..+....+|++|+..+-. |+++ .|+ ...++..+|.++.+
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~q 1157 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQ 1157 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHh
Confidence 3577788888889999999999887554 4444 111 24578899999999
Q ss_pred hcchhHHHHHHHHhh
Q psy17306 711 ARIFDRANTLFYVSS 725 (904)
Q Consensus 711 ~g~~~~A~~~~~~a~ 725 (904)
+|.|..|-+-|.+|-
T Consensus 1158 QG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1158 QGAYHAATKKFTQAG 1172 (1416)
T ss_pred ccchHHHHHHHhhhh
Confidence 999999988887663
No 159
>PRK15331 chaperone protein SicA; Provisional
Probab=98.91 E-value=1.9e-08 Score=88.42 Aligned_cols=106 Identities=15% Similarity=0.048 Sum_probs=97.2
Q ss_pred HHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy17306 611 AVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKA 690 (904)
Q Consensus 611 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 690 (904)
+..+.++..+..+..|.-++..|++++|.. .|+-..-.+|.++..|..||.|+..+|+|++|+..|..+
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~-----------~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A 97 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAET-----------FFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVA 97 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHH-----------HHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677889999999999999999999 666666789999999999999999999999999999999
Q ss_pred HhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcc
Q psy17306 691 VSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYF 727 (904)
Q Consensus 691 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 727 (904)
..+++++|...++.|.||..+|+.+.|..+|..+.+.
T Consensus 98 ~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 98 FTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999883
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.90 E-value=5.3e-09 Score=84.57 Aligned_cols=81 Identities=23% Similarity=0.342 Sum_probs=69.8
Q ss_pred hcCHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17306 55 CRKLDKSAHFSTLAIKQNPL--LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA 132 (904)
Q Consensus 55 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 132 (904)
.|+++.|+.+++++++.+|. +...++.+|.|+++.|+|++|+..+++ ...+|.++...+.+|.|+..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68899999999999998884 566788899999999999999999999 888888888888889999999999999999
Q ss_pred HHHH
Q psy17306 133 YVTA 136 (904)
Q Consensus 133 ~~~a 136 (904)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8875
No 161
>KOG1941|consensus
Probab=98.86 E-value=1.2e-06 Score=85.33 Aligned_cols=174 Identities=15% Similarity=0.138 Sum_probs=123.9
Q ss_pred HHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCC----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Q psy17306 542 VYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNP----LLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-- 615 (904)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 615 (904)
++..+|.++....++++|+-+..++++.... +..+. ....+++.++..+..+|....|.++.+.+.++.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s-----~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~ 238 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNS-----YGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ 238 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh-----cCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 3466777777788888888887774443221 11111 124578899999999999999999999998872
Q ss_pred ----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHH-----HHHH
Q psy17306 616 ----PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL-----AIHH 686 (904)
Q Consensus 616 ----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~-----A~~~ 686 (904)
|-.......+|.+|...|+.+.|...|+++.....+ +...-....++...+.++....-..+ |++.
T Consensus 239 ~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~-----~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~ 313 (518)
T KOG1941|consen 239 HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS-----LGDRMGQVEALDGAAKCLETLRLQNKICNCRALEF 313 (518)
T ss_pred hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Confidence 344567788999999999999999999988865432 11222335667777777665544444 8888
Q ss_pred HHHHHhcCcC------cHHHHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 687 FEKAVSLDPN------FLDAYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 687 ~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
-++++++... --..+..++.+|..+|.-++=...+..+-
T Consensus 314 n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~ 358 (518)
T KOG1941|consen 314 NTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAH 358 (518)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 8888887433 24567889999999988888777776654
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.86 E-value=1.1e-08 Score=77.99 Aligned_cols=64 Identities=34% Similarity=0.547 Sum_probs=40.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcH
Q psy17306 624 NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL 698 (904)
Q Consensus 624 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 698 (904)
.+|..+...|++++|+. .|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~-----------~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIA-----------AFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHH-----------HHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHH-----------HHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45666666666666666 55555556666666666666666666666666666666666666654
No 163
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.85 E-value=1.3e-08 Score=77.63 Aligned_cols=63 Identities=25% Similarity=0.469 Sum_probs=37.4
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q psy17306 81 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL 143 (904)
Q Consensus 81 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 143 (904)
.+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 455566666666666666666666666666666666666666666666666666666666654
No 164
>KOG4648|consensus
Probab=98.85 E-value=5.3e-09 Score=100.44 Aligned_cols=219 Identities=14% Similarity=0.038 Sum_probs=129.9
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy17306 45 LLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 124 (904)
Q Consensus 45 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 124 (904)
+-..|.-|+.+|+|++|+.+|.+++..+|.|+..+.+++.+|++++.|..|...+..++.++.....+|...|.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 34456666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH-------------H---HHHhhHHHHHHcCCHHHHHH
Q psy17306 125 DMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY-------------C---VRSDLGNLLKALGRLDEAKN 188 (904)
Q Consensus 125 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~-------------~---~~~~l~~~~~~~g~~~~A~~ 188 (904)
...+|.+.++.++++.|++.+..-.++.+-. ..++.-.. . ..-.-|..+...|.++.++.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~ 255 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVV 255 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhcccccee
Confidence 6666666666666666665444333332221 11111110 0 01112334444455555444
Q ss_pred HHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH
Q psy17306 189 LHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 268 (904)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 268 (904)
.+...+. ....+.....+ +..+.+..+++.|+.-..+++..+|...
T Consensus 256 ~~~~~~A---------------------------------~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~ 301 (536)
T KOG4648|consen 256 DVVSPRA---------------------------------TIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPM 301 (536)
T ss_pred Eeecccc---------------------------------ccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcC
Confidence 4432111 11111111112 4556666788889988888888888777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 269 DGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
......+.+-.-.|...++...++.++.+.|.+
T Consensus 302 ~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~ 334 (536)
T KOG4648|consen 302 PDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAV 334 (536)
T ss_pred cccCCCchhHHHHhhhhhcCcchhheeeecccc
Confidence 666667777777788888999999999988877
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.84 E-value=7.2e-08 Score=105.49 Aligned_cols=145 Identities=19% Similarity=0.170 Sum_probs=106.8
Q ss_pred ccCCCCcchHHHHHHHHHHHhhCchhHhhcCC---hhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcC-
Q psy17306 524 RTNPEHPNYVAAARATKYVYNVEPDLTREGGS---IPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG- 599 (904)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g- 599 (904)
...|.++..+ -++..|..+...++ ...|+.+|++ +++.+|+++.++-.++.++....
T Consensus 331 ~~~~~~~~Ay--------~~~lrg~~~~~~~~~~~~~~A~~lle~-----------Ai~ldP~~a~a~A~la~~~~~~~~ 391 (517)
T PRK10153 331 QGLPHQGAAL--------TLFYQAHHYLNSGDAKSLNKASDLLEE-----------ILKSEPDFTYAQAEKALADIVRHS 391 (517)
T ss_pred ccCCCCHHHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHH-----------HHHhCCCcHHHHHHHHHHHHHHHh
Confidence 3455555555 23455555544433 6778888888 99999999999999988875542
Q ss_pred -------CHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHH
Q psy17306 600 -------QLQEALENYRHAVRL--KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNL 670 (904)
Q Consensus 600 -------~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~l 670 (904)
+...+.+...+++.+ +|..+.++..+|..+...|++++|.. .+++++.++|+ ..+|..+
T Consensus 392 ~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~-----------~l~rAl~L~ps-~~a~~~l 459 (517)
T PRK10153 392 QQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQ-----------AINKAIDLEMS-WLNYVLL 459 (517)
T ss_pred cCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHH-----------HHHHHHHcCCC-HHHHHHH
Confidence 234556666666554 66677788888888888888888888 66666667774 6788888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCcCcHH
Q psy17306 671 GCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699 (904)
Q Consensus 671 g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 699 (904)
|.++...|++++|++.|++|+.++|.++.
T Consensus 460 G~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 460 GKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 88888888888888888888888888775
No 166
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.83 E-value=1.1e-07 Score=94.25 Aligned_cols=110 Identities=16% Similarity=0.216 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhc
Q psy17306 584 LAEAYSNLGNVY-KERGQLQEALENYRHAVRLKPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIET 659 (904)
Q Consensus 584 ~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~ 659 (904)
....++..|..+ ...|++++|+..|+..++..|++ +.+++.+|.+|+..|++++|+..|+++++..| .
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP--------~ 212 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP--------K 212 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--------C
Confidence 356677777766 56799999999999999999998 57999999999999999999996665554433 2
Q ss_pred CcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHH
Q psy17306 660 RPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAY 701 (904)
Q Consensus 660 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 701 (904)
+|..+.+++.+|.++..+|++++|+..|+++++..|+...+.
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 566789999999999999999999999999999999887553
No 167
>KOG4234|consensus
Probab=98.83 E-value=6.9e-08 Score=85.76 Aligned_cols=135 Identities=21% Similarity=0.248 Sum_probs=102.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHH
Q psy17306 625 LAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704 (904)
Q Consensus 625 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 704 (904)
=|.-++..|+|++|..-|..||++.|+...+ .....|.+.|.+..+++.++.|+....+|++++|.+..++...
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e------~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTE------ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHH------HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 3555666677777777666666666654432 1245688899999999999999999999999999999999999
Q ss_pred HHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHH--------HHHHHHHHcCCCCCccccc
Q psy17306 705 GNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTE--------ELNKKFEQLGESSLRDFTL 765 (904)
Q Consensus 705 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~l~~~~~~~~~~ 765 (904)
|.+|.++..+++|++-|++.+++.|........+.+...+++ +.-.++..+|...+.+|++
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlGN~iL~pFGl 243 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLGNFILSPFGL 243 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Confidence 999999999999999999999999987766655554443333 3344555666666777765
No 168
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.81 E-value=1.1e-07 Score=97.04 Aligned_cols=180 Identities=16% Similarity=0.100 Sum_probs=133.2
Q ss_pred HHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----
Q psy17306 540 KYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK---- 615 (904)
Q Consensus 540 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---- 615 (904)
+..|...|..|...+++++|...|.++.+ +..+ .......+..+...|.++... ++++|+.+|++++.+.
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~----~~~~-~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G 108 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAAD----CYEK-LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG 108 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHH----HHHH-TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHH----HHHH-cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC
Confidence 35678889999999999999999999322 2221 111123456778888887766 9999999999999872
Q ss_pred -CC-cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy17306 616 -PD-FIDGYINLAAALVAA-GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692 (904)
Q Consensus 616 -p~-~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 692 (904)
|. -..++..+|.+|... |++++|+++|++|++ .|... ...-.....+..+|.++...|+|++|++.|+++..
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~----~y~~e-~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAE----LYEQE-GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHH----HHHHT-T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHC-CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22 245889999999999 999999999999997 44332 11122346788999999999999999999999987
Q ss_pred cCcC-------cHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCC
Q psy17306 693 LDPN-------FLDAYINLGNVLKEARIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 693 ~~p~-------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 730 (904)
..-+ ....+...+.|+...|+...|...|++.....|+
T Consensus 184 ~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 184 KCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp TCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 6321 1245677888999999999999999999887764
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.79 E-value=1.6e-07 Score=95.86 Aligned_cols=200 Identities=21% Similarity=0.212 Sum_probs=127.5
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhcC-----cc-cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC-----CC-CHHHHH
Q psy17306 47 LLSSIHFQCRKLDKSAHFSTLAIKQN-----PL-LAEAYSNLGNVYKERGQLQEALENYRHAVRLK-----PD-FIDGYI 114 (904)
Q Consensus 47 ~la~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~ 114 (904)
..|.+|...|++++|..+|.++.... +. .+.++...+.++.+. ++++|+.+|++++.+. |. -..++.
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~ 118 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLK 118 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34788888999999999999987642 22 344666666666555 9999999999999873 11 145788
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHhcCCCh------hhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHH
Q psy17306 115 NLAAALVAA-GDMEQAVQAYVTALQYNPDL------YCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAK 187 (904)
Q Consensus 115 ~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~ 187 (904)
.+|.+|... |++++|+++|++|+.+.... ..++..+|.++...|+|++|+..|
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~-------------------- 178 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIY-------------------- 178 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHH--------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHH--------------------
Confidence 999999998 99999999999998763211 234455555555555555555555
Q ss_pred HHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhc---CchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q psy17306 188 NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ---NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 264 (904)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 264 (904)
++... ..+.. .......++..+.+++..|++..|...+++....+
T Consensus 179 ---e~~~~-----------------------------~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 179 ---EEVAK-----------------------------KCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp ---HHHHH-----------------------------TCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred ---HHHHH-----------------------------HhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 32110 00000 11223456677889999999999999999999988
Q ss_pred CCCH-----HHHHHHHHHHH--HcCCHHHHHHHHHHHHhhCC
Q psy17306 265 PDFI-----DGYINLAAALV--AAGDMEQAVQAYVTALQYNP 299 (904)
Q Consensus 265 p~~~-----~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p 299 (904)
|... .....+-.++. ....+++|+.-|.+.-++++
T Consensus 227 ~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 227 PSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp TTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred CCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 7543 23344444443 23457777777766555443
No 170
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.79 E-value=9e-06 Score=82.49 Aligned_cols=224 Identities=37% Similarity=0.466 Sum_probs=188.1
Q ss_pred cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhhcCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCcHHHHH
Q psy17306 21 AGDYESAERHCMQLWRQETN--NTGVLLLLSSIHFQCRKLDKSAHFSTLAIK--QNPLLAEAYSNLGNVYKERGQLQEAL 96 (904)
Q Consensus 21 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~ 96 (904)
.+.+..+...+...+...+. ........+..+...+++..+...+...+. ..+.....+...+..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 47778888888888887776 378888899999999999999999999987 67888899999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC---hhhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17306 97 ENYRHAVRLKPDFIDGYINLAA-ALVAAGDMEQAVQAYVTALQYNPD---LYCVRSDLGNLLKALGRLDEAKDLYCVRSD 172 (904)
Q Consensus 97 ~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (904)
..+.+++...+.........+. ++...|+++.|...+.+++..+|. ........+..+...++++.++..+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~----- 190 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELL----- 190 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHH-----
Confidence 9999999988877666666666 899999999999999999887763 3444555555555566666666555
Q ss_pred hHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCch-hHHHHHHHHHHHHHhCCHH
Q psy17306 173 LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQ 251 (904)
Q Consensus 173 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~ 251 (904)
.+.+...+. ....+..++..+...+++.
T Consensus 191 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 191 ---------------------------------------------------EKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred ---------------------------------------------------HHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 466666777 6888999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17306 252 EALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPL 300 (904)
Q Consensus 252 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 300 (904)
.|+..+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 220 EALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999999999987788888888888778899999999999999886
No 171
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=9.2e-07 Score=79.87 Aligned_cols=93 Identities=24% Similarity=0.333 Sum_probs=78.8
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy17306 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLL 154 (904)
Q Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 154 (904)
.+..++.+|..|-..|-+.-|.-.|.+++.+.|+.+.++..+|..+...|+++.|.+.|+..++++|.+.-+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCChHHHHHHH
Q psy17306 155 KALGRLDEAKDLY 167 (904)
Q Consensus 155 ~~~~~~~~A~~~~ 167 (904)
.--|++.-|.+.+
T Consensus 144 YY~gR~~LAq~d~ 156 (297)
T COG4785 144 YYGGRYKLAQDDL 156 (297)
T ss_pred eecCchHhhHHHH
Confidence 8888888887666
No 172
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.78 E-value=1.7e-07 Score=92.74 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=58.8
Q ss_pred HHHHHHHHHHH-HhhcCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC---HHHHH
Q psy17306 42 TGVLLLLSSIH-FQCRKLDKSAHFSTLAIKQNPLL---AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF---IDGYI 114 (904)
Q Consensus 42 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 114 (904)
....+..|..+ +..|+|++|+..|+..++..|++ +.+++.+|.+|+..|++++|+..|++++...|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34444444443 34456666666666666655554 3456666666666666666666666666555442 45555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCChh
Q psy17306 115 NLAAALVAAGDMEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 115 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 144 (904)
.+|.++..+|++++|+..|+++++..|+..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 666666666666666666666666666554
No 173
>KOG2471|consensus
Probab=98.75 E-value=6.1e-05 Score=76.81 Aligned_cols=149 Identities=17% Similarity=0.149 Sum_probs=104.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHH--------------------HHHhhHHH
Q psy17306 117 AAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC--------------------VRSDLGNL 176 (904)
Q Consensus 117 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~--------------------~~~~l~~~ 176 (904)
-..+.++.+..-+..-.+.+..+..+.+.+....+..++..|++..|.+.+. .++++|-+
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcI 292 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCI 292 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceE
Confidence 3444555566666666666666666677778888888889999999988881 35678888
Q ss_pred HHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHH
Q psy17306 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALEN 256 (904)
Q Consensus 177 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 256 (904)
+...|.|.-+..+|.+++......... .+.... ...-......+..++.|..+...|++-.|..+
T Consensus 293 h~~~~~y~~~~~~F~kAL~N~c~qL~~----g~~~~~-----------~~tls~nks~eilYNcG~~~Lh~grPl~AfqC 357 (696)
T KOG2471|consen 293 HYQLGCYQASSVLFLKALRNSCSQLRN----GLKPAK-----------TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQC 357 (696)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHHHhc----cCCCCc-----------ceehhcccchhhHHhhhHHHHhcCCcHHHHHH
Confidence 888888888888887665411100000 000000 00000113467899999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHH
Q psy17306 257 YRHAVRLKPDFIDGYINLAAALVA 280 (904)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~ 280 (904)
|.++......+|..|+.++.|.+.
T Consensus 358 f~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 358 FQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999999999999999998764
No 174
>KOG1941|consensus
Probab=98.74 E-value=1.4e-06 Score=84.97 Aligned_cols=268 Identities=19% Similarity=0.251 Sum_probs=194.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhcCHHHHHHHHHHHHhcC----c--ccH
Q psy17306 6 QLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNT---GVLLLLSSIHFQCRKLDKSAHFSTLAIKQN----P--LLA 76 (904)
Q Consensus 6 ~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p--~~~ 76 (904)
..+...+..|..++...++++|+..+.+.+..-.+.. ..+-.+..+...+|.|++++.+--..+... . ...
T Consensus 4 ~q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ 83 (518)
T KOG1941|consen 4 DQTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLL 83 (518)
T ss_pred chhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678899999999999999999999987654432 344445667888899988877655444431 1 135
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh------hh
Q psy17306 77 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDF-----IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL------YC 145 (904)
Q Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 145 (904)
.++.+++..+...-++.+++.+-+..+.+.... ..+...+|.++..++.++++++.|+.++++..++ ..
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 688899999999999999999998888874333 3567779999999999999999999999874433 25
Q ss_pred HHHHHHHHHHHcCChHHHHHHHH---------------------HHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHH
Q psy17306 146 VRSDLGNLLKALGRLDEAKDLYC---------------------VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNA 204 (904)
Q Consensus 146 ~~~~la~~~~~~~~~~~A~~~~~---------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 204 (904)
++..||.++....++++|.-+.. ..+.++..+...|....|.+..+++.+..
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla------- 236 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA------- 236 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH-------
Confidence 78899999999999999876652 44556677777777777777776533200
Q ss_pred HHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHH
Q psy17306 205 IVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD------FIDGYINLAAAL 278 (904)
Q Consensus 205 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~ 278 (904)
-.....+..+.....+|.+|...|+.+.|..-|+.+...... ...++...+.++
T Consensus 237 --------------------l~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~ 296 (518)
T KOG1941|consen 237 --------------------LQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCL 296 (518)
T ss_pred --------------------HHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 111223445677888999999999999999999999876321 234666666666
Q ss_pred HHcCCHHH-----HHHHHHHHHhhCCC
Q psy17306 279 VAAGDMEQ-----AVQAYVTALQYNPL 300 (904)
Q Consensus 279 ~~~g~~~~-----A~~~~~~al~~~p~ 300 (904)
....-..+ |++.-.+++++...
T Consensus 297 ~~~r~~~k~~~Crale~n~r~levA~~ 323 (518)
T KOG1941|consen 297 ETLRLQNKICNCRALEFNTRLLEVASS 323 (518)
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHH
Confidence 65544444 77777777766543
No 175
>KOG4234|consensus
Probab=98.73 E-value=1.7e-07 Score=83.33 Aligned_cols=118 Identities=24% Similarity=0.269 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhc
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI-----DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIET 659 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~ 659 (904)
+..+-.-|+-++..|+|++|..-|..||.+.|..+ ..|.+.|.+...++.++.|+. .+.+++++
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~-----------dcsKaiel 163 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIE-----------DCSKAIEL 163 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHH-----------HHHhhHhc
Confidence 34456678888999999999999999999998754 478899999999999999999 88888899
Q ss_pred CcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcc
Q psy17306 660 RPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARI 713 (904)
Q Consensus 660 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 713 (904)
+|.+-.++...+.+|.++..+++|++.|.+.++.+|....+.-..+.+--....
T Consensus 164 ~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~e 217 (271)
T KOG4234|consen 164 NPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINE 217 (271)
T ss_pred CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHH
Confidence 999999999999999999999999999999999999988877766665444333
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.70 E-value=4.1e-07 Score=77.36 Aligned_cols=96 Identities=24% Similarity=0.218 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcc
Q psy17306 586 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD 662 (904)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~ 662 (904)
.+++.+|.++...|+.++|+..|++++...++. ..+++.+|..+..+|++++|+.. +++.+...|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~-----------L~~~~~~~p~ 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALAL-----------LEEALEEFPD 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHH-----------HHHHHHHCCC
Confidence 356666666777777777777777776654332 34666666666666666666663 3333333344
Q ss_pred ---hHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy17306 663 ---FAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692 (904)
Q Consensus 663 ---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 692 (904)
+..+...++.++...|+.++|+..+-.++.
T Consensus 71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 71 DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455555666666666666666666666554
No 177
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.70 E-value=1.1e-05 Score=81.74 Aligned_cols=203 Identities=31% Similarity=0.334 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHH-
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWR--QETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGN- 84 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~- 84 (904)
.......+..+...+++..+...+...+. ..+.....+...+..+...+++..++..+..++...+.........+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 45677888899999999999999999987 688889999999999999999999999999999988877666666666
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHcCCh
Q psy17306 85 VYKERGQLQEALENYRHAVRLKP---DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD-LYCVRSDLGNLLKALGRL 160 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~ 160 (904)
++...|+++.|...|.+++...| .........+..+...++++.|+..+.+++...+. ....+..++..+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 89999999999999999998777 35666777777788999999999999999999999 688888888888888888
Q ss_pred HHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHH
Q psy17306 161 DEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNL 240 (904)
Q Consensus 161 ~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 240 (904)
..|...+ ..++...|.....+..+
T Consensus 219 ~~a~~~~--------------------------------------------------------~~~~~~~~~~~~~~~~~ 242 (291)
T COG0457 219 EEALEYY--------------------------------------------------------EKALELDPDNAEALYNL 242 (291)
T ss_pred HHHHHHH--------------------------------------------------------HHHHhhCcccHHHHhhH
Confidence 8777777 46666666666777778
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCC
Q psy17306 241 GNVYKERGQLQEALENYRHAVRLKPD 266 (904)
Q Consensus 241 g~~~~~~g~~~~A~~~~~~al~~~p~ 266 (904)
+..+...+.++++...+.+++...|.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 243 ALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888777899999999999999887
No 178
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.69 E-value=4.4e-07 Score=94.54 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--HHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17306 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTG--VLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYK 87 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 87 (904)
.++..+..++..|.--.+-.... .|+... ..-.+..+....++++.|+..+++..+.+|+ +...++.++.
T Consensus 140 ~fi~~~~~~~~~G~~lG~~~~i~-----~~t~~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l 211 (395)
T PF09295_consen 140 NFIKLFPKLFERGWKLGSDPEIQ-----VPTIVNNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYL 211 (395)
T ss_pred HHHHHHHHHhhcccccCCCCccC-----CCCCcchHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHH
Confidence 35666666666665443322111 133222 2223344455667888888888888887765 5566788888
Q ss_pred HhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 88 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 88 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
..++-.+|++.+.+++...|.+...+...+..+...++++.|+...++++...|++...|..|+.+|...|+++.|+..+
T Consensus 212 ~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 212 LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLAL 291 (395)
T ss_pred hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888776
Q ss_pred H
Q psy17306 168 C 168 (904)
Q Consensus 168 ~ 168 (904)
+
T Consensus 292 N 292 (395)
T PF09295_consen 292 N 292 (395)
T ss_pred h
Confidence 4
No 179
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.67 E-value=4.5e-07 Score=78.08 Aligned_cols=84 Identities=20% Similarity=0.169 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc---HHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETN---NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL---AEAYSN 81 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 81 (904)
+..++..|...+..|+|.+|++.|+.+....|. ...+.+.+|.+|+..|++++|+..+++.++++|++ ..+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 567889999999999999999999999888776 46788889999999999999999999999988875 457888
Q ss_pred HHHHHHHhCc
Q psy17306 82 LGNVYKERGQ 91 (904)
Q Consensus 82 la~~~~~~g~ 91 (904)
.|.+++.+..
T Consensus 90 ~gL~~~~~~~ 99 (142)
T PF13512_consen 90 RGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHhh
Confidence 8888887765
No 180
>KOG2053|consensus
Probab=98.67 E-value=0.0015 Score=72.43 Aligned_cols=188 Identities=15% Similarity=0.097 Sum_probs=133.3
Q ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHH
Q psy17306 3 DIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNL 82 (904)
Q Consensus 3 ~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 82 (904)
.+|+..-+....|..+++.|+.++|..+++..-...+++...+-.+-.+|...|++++|..+|++++..+|+ -..++.+
T Consensus 38 k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~l 116 (932)
T KOG2053|consen 38 KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHL 116 (932)
T ss_pred HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHH
Confidence 457777788899999999999999998888777777788889999999999999999999999999999999 8888888
Q ss_pred HHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCC---------HHHHHHHHHHHHhcC-CChh-hHHHHH
Q psy17306 83 GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV-AAGD---------MEQAVQAYVTALQYN-PDLY-CVRSDL 150 (904)
Q Consensus 83 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~---------~~~A~~~~~~al~~~-p~~~-~~~~~l 150 (904)
=.+|.+.+.|.+=.+.--+..+..|.++..+.....+.. .... ..-|....++.++.. +-.. .-....
T Consensus 117 FmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Ly 196 (932)
T KOG2053|consen 117 FMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILY 196 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHH
Confidence 889999888877666666666677887654433333333 2222 234556666666655 2111 112233
Q ss_pred HHHHHHcCChHHHHHHHH-------------HHHhhHHHHHHcCCHHHHHHHHh
Q psy17306 151 GNLLKALGRLDEAKDLYC-------------VRSDLGNLLKALGRLDEAKNLHT 191 (904)
Q Consensus 151 a~~~~~~~~~~~A~~~~~-------------~~~~l~~~~~~~g~~~~A~~~~~ 191 (904)
-.++..+|++++|.+.+. ....-...+...+++.+-.++..
T Consensus 197 l~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 197 LLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 356667888888888872 11123445555666665555554
No 181
>KOG3616|consensus
Probab=98.66 E-value=0.0005 Score=73.65 Aligned_cols=80 Identities=10% Similarity=0.061 Sum_probs=54.3
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHh--------------------cCcccHHH
Q psy17306 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK--------------------QNPLLAEA 78 (904)
Q Consensus 19 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------------~~p~~~~~ 78 (904)
...|+|+.|..+++. +...|+....|..++.+.+..|+.--|..+|...-. +..+-...
T Consensus 455 id~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~f 533 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDF 533 (1636)
T ss_pred cccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchH
Confidence 568999999887765 567888778888888888888887777776653311 11222345
Q ss_pred HHHHHHHHHHhCcHHHHHHHH
Q psy17306 79 YSNLGNVYKERGQLQEALENY 99 (904)
Q Consensus 79 ~~~la~~~~~~g~~~~A~~~~ 99 (904)
|..++.+...-.+|.+|...|
T Consensus 534 ykvra~lail~kkfk~ae~if 554 (1636)
T KOG3616|consen 534 YKVRAMLAILEKKFKEAEMIF 554 (1636)
T ss_pred HHHHHHHHHHHhhhhHHHHHH
Confidence 556666666666677666665
No 182
>KOG1070|consensus
Probab=98.63 E-value=6.3e-06 Score=94.12 Aligned_cols=217 Identities=13% Similarity=0.120 Sum_probs=178.5
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc-Cccc----HHHHHHHHHHHHHhCcHHHHHHHHH
Q psy17306 26 SAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ-NPLL----AEAYSNLGNVYKERGQLQEALENYR 100 (904)
Q Consensus 26 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~~~ 100 (904)
+..+-|++.+..+|++.-.|...-...+..++.++|.+.+++|+.. ++.. ...|..+-+....-|.-+.-.+.|+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 3456678888889999999999888889999999999999999874 4432 2244444444444466677788888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHc
Q psy17306 101 HAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKAL 180 (904)
Q Consensus 101 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 180 (904)
+|.+... ....+..|..+|...+.+++|.++++.+++........|..++..+.+..+-+.|..++
T Consensus 1522 RAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL------------- 1587 (1710)
T KOG1070|consen 1522 RACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELL------------- 1587 (1710)
T ss_pred HHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHH-------------
Confidence 8887642 35678888899999999999999999999988878889999999998888877777777
Q ss_pred CCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCch--hHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17306 181 GRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL--LAEAYSNLGNVYKERGQLQEALENYR 258 (904)
Q Consensus 181 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~ 258 (904)
.+++..-|. +.......|.+-++.|+.+.+...|+
T Consensus 1588 -------------------------------------------~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfE 1624 (1710)
T KOG1070|consen 1588 -------------------------------------------KRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFE 1624 (1710)
T ss_pred -------------------------------------------HHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHH
Confidence 466666665 67788889999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17306 259 HAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299 (904)
Q Consensus 259 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 299 (904)
-.+..+|...+.|.-+...-.+.|+.+.+...|++++.+.-
T Consensus 1625 gll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1625 GLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999997654
No 183
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.63 E-value=7.3e-08 Score=76.75 Aligned_cols=74 Identities=28% Similarity=0.404 Sum_probs=61.5
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 616 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 616 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
|+...++.++|.+|..+|++++|+.+|++++++ ....-..+|..+.++.++|.++..+|++++|+++|++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDI----EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556788999999999999999999999999973 22222234566889999999999999999999999999986
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.63 E-value=5.1e-07 Score=76.79 Aligned_cols=100 Identities=21% Similarity=0.085 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC--
Q psy17306 619 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN-- 696 (904)
Q Consensus 619 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-- 696 (904)
+.+++.+|+++-..|+.++|+..|++++....+ .+....++..+|.++..+|++++|+..+++++...|+
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~--------~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLS--------GADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE 72 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc
Confidence 357899999999999999999977776653321 3344679999999999999999999999999999888
Q ss_pred -cHHHHHHHHHHHHHhcchhHHHHHHHHhhc
Q psy17306 697 -FLDAYINLGNVLKEARIFDRANTLFYVSSY 726 (904)
Q Consensus 697 -~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 726 (904)
+..+...++.++...|++++|+..+-.++.
T Consensus 73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 LNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888899999999999999999999987765
No 185
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.63 E-value=5.4e-05 Score=75.09 Aligned_cols=220 Identities=19% Similarity=0.131 Sum_probs=127.9
Q ss_pred hhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC---CCCHH-----HHHHHHHHHHHcCC
Q psy17306 54 QCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK---PDFID-----GYINLAAALVAAGD 125 (904)
Q Consensus 54 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~-----~~~~la~~~~~~g~ 125 (904)
..|+.+.|..+.+++-...|.-++++...-...+..|+|+.|++..+...... ++..+ .+...+.... .-+
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCC
Confidence 34555555555555555555554444444444445555555555544433221 11110 1111111111 123
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHH
Q psy17306 126 MEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAI 205 (904)
Q Consensus 126 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 205 (904)
...|...-.++.++.|+...+-..-+..+...|+..++ -.+++.+-+. .++.....
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg-----------------------~~ilE~aWK~-ePHP~ia~ 300 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKG-----------------------SKILETAWKA-EPHPDIAL 300 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhh-----------------------hhHHHHHHhc-CCChHHHH
Confidence 44455555555555555544444455555555555444 4444433221 12223333
Q ss_pred HHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCH
Q psy17306 206 VCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA-GDM 284 (904)
Q Consensus 206 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~ 284 (904)
.+......+.....++-..+.....|++.+....++..-+..|++..|..--+.+....|. ..++..++.+-... |+-
T Consensus 301 lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDq 379 (531)
T COG3898 301 LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQ 379 (531)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCch
Confidence 3333344444455555556788889999999999999999999999999999999999987 55677788887755 999
Q ss_pred HHHHHHHHHHHhhCC
Q psy17306 285 EQAVQAYVTALQYNP 299 (904)
Q Consensus 285 ~~A~~~~~~al~~~p 299 (904)
.++..++-++++.-.
T Consensus 380 g~vR~wlAqav~APr 394 (531)
T COG3898 380 GKVRQWLAQAVKAPR 394 (531)
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999999997533
No 186
>KOG3081|consensus
Probab=98.63 E-value=2.6e-05 Score=73.45 Aligned_cols=256 Identities=9% Similarity=0.018 Sum_probs=159.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHH
Q psy17306 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 93 (904)
Q Consensus 14 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 93 (904)
-.+.++..|+|..++....+.-... ...+....+.+.|...|++..-+......- .....+...++.....-++-+
T Consensus 14 ~iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 14 NIRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhH
Confidence 3456677888888887766654333 667777777888888887765554443322 122345555666655556655
Q ss_pred HHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy17306 94 EALENYRHAVRL--KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRS 171 (904)
Q Consensus 94 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (904)
.-+....+.+.. ...+...+..-|.++..-|++++|.+..... .+.++...-..++.+..+.+-|...+
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~l---- 160 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKEL---- 160 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 555555444433 2233345555667778888888888877663 33444444555666666666665555
Q ss_pred hhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHH---HhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhC
Q psy17306 172 DLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIV---CNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERG 248 (904)
Q Consensus 172 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 248 (904)
++..+.........+. ...........++.-.|+..-...|..+......+.+++.+|
T Consensus 161 -------------------k~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 161 -------------------KKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred -------------------HHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhc
Confidence 2211111111111111 111122223444555556666766777888888999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCCc
Q psy17306 249 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ-AYVTALQYNPLL 301 (904)
Q Consensus 249 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~ 301 (904)
+|++|...++.++..++++++++.++..+-...|...++.. ...+.....|.+
T Consensus 222 ~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999888888888766654 445555666776
No 187
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.62 E-value=9.5e-07 Score=92.10 Aligned_cols=126 Identities=16% Similarity=0.160 Sum_probs=110.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHH
Q psy17306 589 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWS 668 (904)
Q Consensus 589 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~ 668 (904)
-.+-.++...++++.|+..+++..+.+|+ +...++.++...++..+|++ .+.+++..+|.++..+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~-----------ll~~aL~~~p~d~~LL~ 238 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIR-----------LLNEALKENPQDSELLN 238 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHH-----------HHHHHHHhCCCCHHHHH
Confidence 34455666778999999999999998876 55668999999999999999 66677778888899999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhccc
Q psy17306 669 NLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFM 728 (904)
Q Consensus 669 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~ 728 (904)
..+..+...++++.|+...++++.+.|++...|+.|+.+|..+|+++.|+-.++.+--..
T Consensus 239 ~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 239 LQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999999999999999999999999999999999999999999998887654433
No 188
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.62 E-value=3.3e-07 Score=81.26 Aligned_cols=96 Identities=22% Similarity=0.193 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhC
Q psy17306 601 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM---EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQ 677 (904)
Q Consensus 601 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~ 677 (904)
++.|.+.++.....+|.+++.+++.|.++..+.++ .++.+.++.++. -|++++.++|+...+++++|.+|..+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAis----K~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAIS----KFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH----HHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHH----HHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999887654 568888888887 78888888898888888888888776
Q ss_pred CC-----------HHHHHHHHHHHHhcCcCcHHH
Q psy17306 678 GE-----------IWLAIHHFEKAVSLDPNFLDA 700 (904)
Q Consensus 678 g~-----------~~~A~~~~~~al~~~p~~~~a 700 (904)
+. |++|..+|++|...+|++...
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 53 566666666666666665443
No 189
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.62 E-value=8.2e-06 Score=77.40 Aligned_cols=161 Identities=21% Similarity=0.195 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc---HHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNN---TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL---AEAYS 80 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 80 (904)
-+..|+..|...++.|++++|+..|+.+....|.+ ..+...++.++++.+++++|+..+++.+.+.|++ ..+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 35679999999999999999999999999988864 5789999999999999999999999999997764 55788
Q ss_pred HHHHHHHHh--------CcHHHHHHHHHHHHhcCCCCHH---H--------------HHHHHHHHHHcCCHHHHHHHHHH
Q psy17306 81 NLGNVYKER--------GQLQEALENYRHAVRLKPDFID---G--------------YINLAAALVAAGDMEQAVQAYVT 135 (904)
Q Consensus 81 ~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~---~--------------~~~la~~~~~~g~~~~A~~~~~~ 135 (904)
..|.+++.. .-..+|+..|+..+...|++.- + =..+|..|.+.|.+-.|+.-++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 888887643 2246788999999999988631 1 13568889999999999999999
Q ss_pred HHhcCCCh---hhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 136 ALQYNPDL---YCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 136 al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
+++..|+. .+++..+..+|..+|-.++|...-
T Consensus 193 v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 193 VLENYPDTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred HHhccccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 99987765 467788888888888888886554
No 190
>KOG3081|consensus
Probab=98.61 E-value=3.9e-05 Score=72.36 Aligned_cols=176 Identities=13% Similarity=0.042 Sum_probs=128.8
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
..-|.++...|++++|+..... -.+.++...--.|+.++.+.+-|....+++.+++.+ ..+.
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~----------------~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLt 173 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHL----------------GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLT 173 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhc----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHH
Confidence 5567788899999999987765 223444455556788888999999999999998766 3444
Q ss_pred HHHHHHHH--cC--CHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH
Q psy17306 624 NLAAALVA--AG--DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699 (904)
Q Consensus 624 ~lg~~~~~--~g--~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 699 (904)
.||..+.. .| ++.+|.- .|+..-+.-|-.+..+..++.|+..+|++++|...++.+|..++++|+
T Consensus 174 QLA~awv~la~ggek~qdAfy-----------ifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe 242 (299)
T KOG3081|consen 174 QLAQAWVKLATGGEKIQDAFY-----------IFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE 242 (299)
T ss_pred HHHHHHHHHhccchhhhhHHH-----------HHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH
Confidence 45554443 33 5777777 555555555667889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHhh-cccCChhhHHHHHHHHHHHHHHHHHHH
Q psy17306 700 AYINLGNVLKEARIFDRANTLFYVSS-YFMITDEDIDVILERCEAKTEELNKKF 752 (904)
Q Consensus 700 a~~~la~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~l~~~~~~~~~~~~~~ 752 (904)
++.|+-.+-...|...++.+-+-..+ ...|+. ....+...+-.+++...
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h----~~vk~~~ekeaeFDrl~ 292 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKLSHPEH----PFVKHLNEKEAEFDRLV 292 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc----hHHHHHHHHHHHHHHHH
Confidence 99999999999999888766554443 333332 23344444444554443
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.59 E-value=1.5e-07 Score=72.53 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=43.4
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHH
Q psy17306 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGN 84 (904)
Q Consensus 19 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 84 (904)
+..|++++|+..|++++..+|++.++++.+|.+++..|++++|...+++++..+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456666667777776666666666666666666666677777766666666666666655555554
No 192
>KOG4648|consensus
Probab=98.59 E-value=3.6e-08 Score=94.91 Aligned_cols=97 Identities=18% Similarity=0.157 Sum_probs=93.4
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
...|+-|+++|.|++|+.+|.+ ++..+|.++..+.+.|.+|.++..+..|...+..++.++..+..+|.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~-----------~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYS 169 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYST-----------AIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYS 169 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhh-----------hhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 6789999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhChh
Q psy17306 624 NLAAALVAAGDMEQAVQAYVTALQYNPS 651 (904)
Q Consensus 624 ~lg~~~~~~g~~~~A~~~~~~al~~~~~ 651 (904)
+.|.+-..+|...+|.+.++.+|.+.|+
T Consensus 170 RR~~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 170 RRMQARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 9999999999999999999999998884
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.58 E-value=2.2e-07 Score=71.69 Aligned_cols=66 Identities=23% Similarity=0.304 Sum_probs=44.3
Q ss_pred HHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy17306 87 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGN 152 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 152 (904)
+..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456677777777777777777777777777777777777777777777777777766655555543
No 194
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.58 E-value=1.1e-07 Score=75.75 Aligned_cols=68 Identities=25% Similarity=0.360 Sum_probs=59.6
Q ss_pred CcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----C---cCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcc
Q psy17306 660 RPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL----D---PNFLDAYINLGNVLKEARIFDRANTLFYVSSYF 727 (904)
Q Consensus 660 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----~---p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 727 (904)
+|+.+.++.++|.+|..+|++++|+.+|++++++ . |..+.++.++|.++..+|++++|+++|++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4677889999999999999999999999999987 2 334778999999999999999999999999864
No 195
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.56 E-value=1.7e-06 Score=82.86 Aligned_cols=102 Identities=20% Similarity=0.272 Sum_probs=66.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc---cHHHHHHHHH
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWRQETNN---TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL---LAEAYSNLGN 84 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~ 84 (904)
++..|..++..|+|..|...|...++..|++ +.++++||.+++.+|+++.|...|..+++..|. .+++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5666666667777777777777766666653 456666666666666666666666666665443 3556666666
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCHHH
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFIDG 112 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~~~ 112 (904)
+...+|+.++|...|+++++..|....+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 6666666666666666666666665544
No 196
>KOG2300|consensus
Probab=98.55 E-value=0.0017 Score=66.77 Aligned_cols=176 Identities=13% Similarity=0.007 Sum_probs=121.5
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCc-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPL-------LAEAYSNLGNVYKERGQLQEALENYRHAVRLK 615 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (904)
+..+..+-.-.|++.+|++......+ .....|. .+..++.+|.-....+.++.|...|..+.++-
T Consensus 326 LE~iv~c~lv~~~~~~al~~i~dm~~--------w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t 397 (629)
T KOG2300|consen 326 LEHIVMCRLVRGDYVEALEEIVDMKN--------WCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLT 397 (629)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH--------HHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh
Confidence 45566677778999999987776222 2223343 35678888888888999999999999999874
Q ss_pred CC-c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy17306 616 PD-F--IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692 (904)
Q Consensus 616 p~-~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 692 (904)
.. + +.+-.++|.+|.+.|+-+.--+..+. +.|.. ...+...-..+.+++-.|...+.++++.+|...+.+.|+
T Consensus 398 ~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~n-t~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 398 ESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLN-TNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred hHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCC-CCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 33 3 33557899999998876654442221 11100 000000001245788889999999999999999999999
Q ss_pred cCcC------cHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCC
Q psy17306 693 LDPN------FLDAYINLGNVLKEARIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 693 ~~p~------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 730 (904)
...- .+-.+.-||.+..-.|+..++.+..+-++.....
T Consensus 474 manaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkK 517 (629)
T KOG2300|consen 474 MANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKK 517 (629)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhc
Confidence 8511 1334667888999999999999999888776544
No 197
>KOG3616|consensus
Probab=98.54 E-value=0.0025 Score=68.53 Aligned_cols=140 Identities=16% Similarity=0.193 Sum_probs=81.0
Q ss_pred HHHHHHHhhcCHHHHHHHHHHH------Hhc----CcccH-HHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHH
Q psy17306 47 LLSSIHFQCRKLDKSAHFSTLA------IKQ----NPLLA-EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 115 (904)
Q Consensus 47 ~la~~~~~~g~~~~A~~~~~~a------l~~----~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 115 (904)
..|.++-+..++++|+++|++. +++ .|... ..--.-|.-+...|+++.|+..|-.+- ....
T Consensus 666 kagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~--------~~~k 737 (1636)
T KOG3616|consen 666 KAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN--------CLIK 737 (1636)
T ss_pred hhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--------hHHH
Confidence 3344444555566666665532 221 22211 112233555566677777777665531 2223
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHH---HHHhhHHHHHHcCCHHHHHHHHhh
Q psy17306 116 LAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC---VRSDLGNLLKALGRLDEAKNLHTE 192 (904)
Q Consensus 116 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~ 192 (904)
..........|.+|+..++....... ....+-.++.-|...|+++.|.++|. ....-..+|.+.|++++|..+-.+
T Consensus 738 aieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHH
Confidence 33344455667777777665543322 23456677888999999999998882 444556677778888888777765
Q ss_pred cCC
Q psy17306 193 NIK 195 (904)
Q Consensus 193 ~~~ 195 (904)
...
T Consensus 817 ~~~ 819 (1636)
T KOG3616|consen 817 CHG 819 (1636)
T ss_pred hcC
Confidence 444
No 198
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.53 E-value=0.00042 Score=69.00 Aligned_cols=202 Identities=16% Similarity=0.091 Sum_probs=141.7
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHc
Q psy17306 47 LLSSIHFQCRKLDKSAHFSTLAIKQNPL--LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF-IDGYINLAAALVAA 123 (904)
Q Consensus 47 ~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~ 123 (904)
..|.+..-.|+-..|.+.-.++-++-.. .+.++..-++.-.-.|+++.|.+-|+.++. +|.. .-.+..|-.-....
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~ 167 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRL 167 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhc
Confidence 3455666778888888888777644222 355666777788888999999999988774 3332 11222222233468
Q ss_pred CCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHH
Q psy17306 124 GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQN 203 (904)
Q Consensus 124 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 203 (904)
|+.+.|+.+-+++-..-|.-+.++...-...+..|+|+.|+++.+ .....
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd----------------~~~~~-------------- 217 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVD----------------AQRAA-------------- 217 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHH----------------HHHHH--------------
Confidence 999999999999999999888888777778888899988888771 11000
Q ss_pred HHHHhhcCCCcchHHHhhHHHHHhhcC---chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy17306 204 AIVCNYGGRKPTTLESAHFSTLAIKQN---PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 280 (904)
Q Consensus 204 ~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (904)
+.++.+ ......+...+.... ..+...|...-.++.++.|+...+-..-+..+++
T Consensus 218 ---------------------~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~ 275 (531)
T COG3898 218 ---------------------KVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFR 275 (531)
T ss_pred ---------------------HhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh
Confidence 011000 011222222233222 2457889999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCc
Q psy17306 281 AGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 281 ~g~~~~A~~~~~~al~~~p~~ 301 (904)
.|+..++-.+++.+.+..|..
T Consensus 276 d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 276 DGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred ccchhhhhhHHHHHHhcCCCh
Confidence 999999999999999988855
No 199
>KOG4555|consensus
Probab=98.53 E-value=4.5e-06 Score=68.76 Aligned_cols=103 Identities=27% Similarity=0.288 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHH
Q psy17306 587 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVA 666 (904)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a 666 (904)
.+-..|......|+.+.|++.|.+++.+.|..+.+|+|.+..+.-+|+.++|+..+++++++.... .-....+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-------trtacqa 117 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-------TRTACQA 117 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-------chHHHHH
Confidence 455668888899999999999999999999999999999999999999999999666666543221 1123568
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCcC
Q psy17306 667 WSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696 (904)
Q Consensus 667 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 696 (904)
+...|.+|..+|+.+.|...|+.|-++...
T Consensus 118 ~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 118 FVQRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 899999999999999999999999988543
No 200
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.52 E-value=2.3e-06 Score=81.97 Aligned_cols=109 Identities=20% Similarity=0.245 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcch
Q psy17306 587 AYSNLGNVYKERGQLQEALENYRHAVRLKPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDF 663 (904)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~ 663 (904)
-.|+.|.-+...|+|..|...|..-++..|++ +.++++||.+++.+|++++|...|..+.+..| .+|.-
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P--------~s~KA 214 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP--------KSPKA 214 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC--------CCCCC
Confidence 37888999999999999999999999999886 57999999999999999999997775555333 36777
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYIN 703 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 703 (904)
+++++.||.+...+|+.++|...|+++++..|..+.+...
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 8999999999999999999999999999999998776543
No 201
>KOG4555|consensus
Probab=98.51 E-value=5.8e-06 Score=68.15 Aligned_cols=123 Identities=20% Similarity=0.228 Sum_probs=99.8
Q ss_pred HHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--
Q psy17306 541 YVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF-- 618 (904)
Q Consensus 541 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-- 618 (904)
..+...|......|+.+.|++.|.+ ++...|..+.+|++.+..+.-+|+.++|++.+++++++..+.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~q-----------al~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~tr 112 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQ-----------ALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTR 112 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHH-----------HHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccch
Confidence 3446678888999999999999999 999999999999999999999999999999999999996443
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhh-HHHhhhcCcchHHHHHHHHHHH
Q psy17306 619 --IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSC-YLKAIETRPDFAVAWSNLGCVF 674 (904)
Q Consensus 619 --~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~l~~~p~~~~a~~~lg~~~ 674 (904)
-.++...|.+|..+|+-+.|...|+.+-++.... -.+.+.++|--+-.--.|+.++
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~MLa~~f 171 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQMLADAF 171 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 3578899999999999999999888887766542 2345566775444434444443
No 202
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.50 E-value=4.9e-05 Score=72.25 Aligned_cols=185 Identities=17% Similarity=0.196 Sum_probs=137.4
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHH---HHH
Q psy17306 41 NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL---AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID---GYI 114 (904)
Q Consensus 41 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 114 (904)
.+.-++.-|...+..|++++|...|+.+...+|.. ..+...++.++++.+++++|+..+++-+.+.|.++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46789999999999999999999999999988764 568899999999999999999999999999888754 577
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHhcCCChhhH---HHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCH
Q psy17306 115 NLAAALVAA--------GDMEQAVQAYVTALQYNPDLYCV---RSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRL 183 (904)
Q Consensus 115 ~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~ 183 (904)
..|.+++.. .-..+|+..|+..+...|++.-+ ...+..+--
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d---------------------------- 164 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLND---------------------------- 164 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH----------------------------
Confidence 777776643 22457888888899999987422 222111111
Q ss_pred HHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy17306 184 DEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL 263 (904)
Q Consensus 184 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 263 (904)
.-+..-..+|+.|.+.|.+..|+..++.+++.
T Consensus 165 ------------------------------------------------~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 165 ------------------------------------------------ALAGHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 11333456778888888888888888888887
Q ss_pred CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 264 KPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 264 ~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
.|+. .+++..+..+|..+|-.++|...-.-.-...|++
T Consensus 197 y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 197 YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 6554 3577777888888888888776554444444544
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.50 E-value=6.5e-07 Score=70.16 Aligned_cols=61 Identities=25% Similarity=0.312 Sum_probs=27.6
Q ss_pred HHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHH
Q psy17306 51 IHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111 (904)
Q Consensus 51 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 111 (904)
+|+..+++++|+.++++++..+|.++..+..+|.++..+|++.+|+..|+++++..|+++.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 3444444444444444444444444444444444444444444444444444444444433
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.49 E-value=5.7e-07 Score=70.49 Aligned_cols=65 Identities=25% Similarity=0.326 Sum_probs=35.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHH
Q psy17306 627 AALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYI 702 (904)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 702 (904)
.+|...+++++|++ .+.+++..+|+++..|..+|.++..+|++.+|+..|+++++..|+++.+..
T Consensus 3 ~~~~~~~~~~~A~~-----------~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALE-----------VLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHH-----------HHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 44555555555555 444444455555555555555555555555555555555555555554443
No 205
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.48 E-value=2.1e-05 Score=69.57 Aligned_cols=149 Identities=19% Similarity=0.165 Sum_probs=122.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHhCcHHHH
Q psy17306 17 REYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK-QNPLLAEAYSNLGNVYKERGQLQEA 95 (904)
Q Consensus 17 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A 95 (904)
...+.=|++.+.....+.+...|. ....+.+|......|++.+|...|++++. +...++..+..+++..+..+++..|
T Consensus 65 a~~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 65 ALQQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHHHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHH
Confidence 334444566666666666666665 45678899999999999999999999886 4556788899999999999999999
Q ss_pred HHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 96 LENYRHAVRLKPD--FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 96 ~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
...+++..+.+|. .++....+|.++...|++.+|...|+.++...|+ +.+....+..+.++|+..++...+
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHH
Confidence 9999999998875 4778899999999999999999999999998886 667778888889999888887665
No 206
>KOG1070|consensus
Probab=98.47 E-value=5.5e-05 Score=86.81 Aligned_cols=221 Identities=12% Similarity=0.088 Sum_probs=184.4
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC----CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHH
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQ-ETN----NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 78 (904)
.|+.+..|+.--...++.++.++|.++.+++|.. ++. -..+|..+-++...-|.-+.-.+.|++|.+... ....
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V 1532 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD-AYTV 1532 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHH
Confidence 4666777887777888999999999999999874 443 234566666666666777788899999988643 2568
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHH
Q psy17306 79 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD--LYCVRSDLGNLLKA 156 (904)
Q Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~ 156 (904)
+..|..+|...+++++|.+.++..++........|..+|..++..++-+.|...+.+|++.-|. +.......|.+-++
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 8899999999999999999999999998888899999999999999999999999999999998 67777888888888
Q ss_pred cCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHH
Q psy17306 157 LGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEA 236 (904)
Q Consensus 157 ~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (904)
.|+.+.+..+| +..+...|...+.
T Consensus 1613 ~GDaeRGRtlf--------------------------------------------------------Egll~ayPKRtDl 1636 (1710)
T KOG1070|consen 1613 YGDAERGRTLF--------------------------------------------------------EGLLSAYPKRTDL 1636 (1710)
T ss_pred cCCchhhHHHH--------------------------------------------------------HHHHhhCccchhH
Confidence 88888888877 6778889999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHc
Q psy17306 237 YSNLGNVYKERGQLQEALENYRHAVRLK--PDFIDGYINLAAALVAA 281 (904)
Q Consensus 237 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~ 281 (904)
|.-+...-.++|+.+.+...|++++.+. |.....++..-.-|.+.
T Consensus 1637 W~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1637 WSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 9999999999999999999999999864 55555555555555544
No 207
>KOG2471|consensus
Probab=98.46 E-value=6.4e-05 Score=76.67 Aligned_cols=146 Identities=16% Similarity=0.103 Sum_probs=109.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHH-HhcCcc--------cHHHHHH
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLA-IKQNPL--------LAEAYSN 81 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~ 81 (904)
.......+++..+...+....+-++.+..+.+.+++..+..++..|++.+|.+.+... +...|. ...+|.+
T Consensus 209 ~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NN 288 (696)
T KOG2471|consen 209 QLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNN 288 (696)
T ss_pred hHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecC
Confidence 3445556667777777777777777777778888888888888888888888877654 222222 3446778
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHhc---------C---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q psy17306 82 LGNVYKERGQLQEALENYRHAVRL---------K---------PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL 143 (904)
Q Consensus 82 la~~~~~~g~~~~A~~~~~~al~~---------~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 143 (904)
+|.++++.|.|.-+..+|.++++- . ......+++.|..|...|++-.|.++|.++......+
T Consensus 289 lGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n 368 (696)
T KOG2471|consen 289 LGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN 368 (696)
T ss_pred cceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC
Confidence 888888888888888888888851 1 1234577888888888888888888888888888888
Q ss_pred hhHHHHHHHHHHH
Q psy17306 144 YCVRSDLGNLLKA 156 (904)
Q Consensus 144 ~~~~~~la~~~~~ 156 (904)
|..|..++.++..
T Consensus 369 PrlWLRlAEcCim 381 (696)
T KOG2471|consen 369 PRLWLRLAECCIM 381 (696)
T ss_pred cHHHHHHHHHHHH
Confidence 8888888888764
No 208
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.46 E-value=5e-07 Score=93.03 Aligned_cols=70 Identities=24% Similarity=0.186 Sum_probs=66.9
Q ss_pred hcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHH---HHHHHHHHHHhcchhHHHHHHHHhhcc
Q psy17306 658 ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA---YINLGNVLKEARIFDRANTLFYVSSYF 727 (904)
Q Consensus 658 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~g~~~~A~~~~~~a~~~ 727 (904)
+.+|+++.+|+++|.+|..+|++++|+..|++|++++|+++.+ ++|+|.+|..+|+.++|+.+|+++++.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999999865 999999999999999999999999986
No 209
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.45 E-value=9.8e-07 Score=90.92 Aligned_cols=82 Identities=26% Similarity=0.322 Sum_probs=71.5
Q ss_pred hCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHh
Q psy17306 580 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG---YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKA 656 (904)
Q Consensus 580 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 656 (904)
.+|+++.+|+++|.+|...|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+..++++++..+..|. .
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~-~ 148 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFS-T 148 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHH-H
Confidence 589999999999999999999999999999999999999854 999999999999999999999999987443443 2
Q ss_pred hhcCcc
Q psy17306 657 IETRPD 662 (904)
Q Consensus 657 l~~~p~ 662 (904)
+..+|+
T Consensus 149 i~~Dpd 154 (453)
T PLN03098 149 ILNDPD 154 (453)
T ss_pred HHhCcc
Confidence 344553
No 210
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.45 E-value=5.4e-06 Score=71.54 Aligned_cols=109 Identities=24% Similarity=0.278 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcC
Q psy17306 584 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETR 660 (904)
Q Consensus 584 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~ 660 (904)
.+..++.-|......|+|++|++.|+.+....|.. ..+...+|.+|+..|++++|+..+++-++++|. +
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~--------h 80 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT--------H 80 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------C
Confidence 46789999999999999999999999999988764 568999999999999999999977766655554 5
Q ss_pred cchHHHHHHHHHHHHhCCC---------------HHHHHHHHHHHHhcCcCcHHH
Q psy17306 661 PDFAVAWSNLGCVFNAQGE---------------IWLAIHHFEKAVSLDPNFLDA 700 (904)
Q Consensus 661 p~~~~a~~~lg~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~a 700 (904)
|+.+.+++..|.+++.+.. ..+|...|++.+...|++..+
T Consensus 81 p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 81 PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 6678899999999999876 888999999999988887654
No 211
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.39 E-value=7.3e-05 Score=66.20 Aligned_cols=90 Identities=23% Similarity=0.302 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh--hhHHHHHHHHH
Q psy17306 78 AYSNLGNVYKERGQLQEALENYRHAVR-LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL--YCVRSDLGNLL 154 (904)
Q Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~ 154 (904)
-.+.+|..+...|++.+|...|++++. +.-.++..+..++...+..+++.+|...+++..+.+|.. ++....+++++
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 344455555555555555555555543 233344445555555555555555555555555544432 33333444444
Q ss_pred HHcCChHHHHHHH
Q psy17306 155 KALGRLDEAKDLY 167 (904)
Q Consensus 155 ~~~~~~~~A~~~~ 167 (904)
...|++.+|...|
T Consensus 171 aa~g~~a~Aesaf 183 (251)
T COG4700 171 AAQGKYADAESAF 183 (251)
T ss_pred HhcCCchhHHHHH
Confidence 4444444443333
No 212
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.38 E-value=4.8e-06 Score=74.00 Aligned_cols=97 Identities=22% Similarity=0.333 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCcHHHHHHH
Q psy17306 556 IPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ----------LQEALENYRHAVRLKPDFIDGYINL 625 (904)
Q Consensus 556 ~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~l 625 (904)
|+.|.+.++. ....+|.+++.+++-|.++..+.+ +++|+.-|+.+|.++|+..++++++
T Consensus 7 FE~ark~aea-----------~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~l 75 (186)
T PF06552_consen 7 FEHARKKAEA-----------AYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCL 75 (186)
T ss_dssp HHHHHHHHHH-----------HHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHHH-----------HHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3455555555 788999999999999998876643 5778889999999999999999999
Q ss_pred HHHHHHcC----CHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHH
Q psy17306 626 AAALVAAG----DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAW 667 (904)
Q Consensus 626 g~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~ 667 (904)
|.+|..++ +..+|..+|+++.+ +|++++..+|++....
T Consensus 76 GnA~ts~A~l~~d~~~A~~~F~kA~~----~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 76 GNAYTSLAFLTPDTAEAEEYFEKATE----YFQKAVDEDPNNELYR 117 (186)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHH----HHHHHHHH-TT-HHHH
T ss_pred HHHHHHHHhhcCChHHHHHHHHHHHH----HHHHHHhcCCCcHHHH
Confidence 99998875 56688899999998 9999999999985433
No 213
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.36 E-value=0.0047 Score=63.24 Aligned_cols=129 Identities=12% Similarity=-0.037 Sum_probs=96.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWRQETNNT-----GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNV 85 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 85 (904)
+..+|..+..++++.+|..+|.++.+...+.+ +++..+..-.+-.++.+.-...+...-+..|..+....-.|..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALV 88 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 56788999999999999999999977655443 3333444445556677777777766667788888888899999
Q ss_pred HHHhCcHHHHHHHHHHHHhcC----CCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy17306 86 YKERGQLQEALENYRHAVRLK----PDF-----------IDGYINLAAALVAAGDMEQAVQAYVTALQY 139 (904)
Q Consensus 86 ~~~~g~~~~A~~~~~~al~~~----p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 139 (904)
.++.+.|.+|++.+......- |.. ...-...|.++...|++.++...+++.+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 999999999999887665541 111 111234678899999999999999998764
No 214
>KOG2796|consensus
Probab=98.32 E-value=9.9e-05 Score=69.22 Aligned_cols=142 Identities=11% Similarity=0.046 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcch
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLK-PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDF 663 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~ 663 (904)
..+.+.+..++...|.|.-.+..+.+.++.+ |..+.....||.+.++.|+.+.|..+|+..-+.. ..+..-...
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~-----~kL~~~q~~ 251 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT-----QKLDGLQGK 251 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-----hhhhccchh
Confidence 3467788889999999999999999999998 6678888899999999999999999887554311 112223344
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCCh
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITD 731 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 731 (904)
-.+..+.+.+|.-..++..|...|.+.+..||.++.+..+-|.|+.-.|+..+|++..+.++...|.+
T Consensus 252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 56778889999999999999999999999999999999999999999999999999999999998864
No 215
>KOG2300|consensus
Probab=98.26 E-value=0.0086 Score=61.77 Aligned_cols=207 Identities=13% Similarity=0.006 Sum_probs=138.9
Q ss_pred hHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHH
Q psy17306 495 VLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFS 574 (904)
Q Consensus 495 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~ 574 (904)
++..+.-+-...++...+.+.+.+........|...-.. ..-..+...+|......+.++.|...|..
T Consensus 325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr---~~~~~ih~LlGlys~sv~~~enAe~hf~~--------- 392 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLR---AHEAQIHMLLGLYSHSVNCYENAEFHFIE--------- 392 (629)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHH---HhHHHHHHHHhhHhhhcchHHHHHHHHHH---------
Confidence 445556666677888888888877777777777632111 22234557888888888999999999988
Q ss_pred HHHHHhCCc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc----------HHHHHHHHHHHHHcCCHHHHHHH
Q psy17306 575 TLAIKQNPL---LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF----------IDGYINLAAALVAAGDMEQAVQA 641 (904)
Q Consensus 575 ~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------~~a~~~lg~~~~~~g~~~~A~~~ 641 (904)
+.+.... -+.+-.++|.+|.+.|+-+. .|+-.-.+.|.+ ..+++-.|...+.++++.||...
T Consensus 393 --a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed---~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~ 467 (629)
T KOG2300|consen 393 --ATKLTESIDLQAFCNLNLAISYLRIGDAED---LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRF 467 (629)
T ss_pred --HHHhhhHHHHHHHHHHhHHHHHHHhccHHH---HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 4443221 24566789999999877544 333333345542 34677888889999999999998
Q ss_pred HHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---cCcHHHHHHH---HHHHHHhcc--
Q psy17306 642 YVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD---PNFLDAYINL---GNVLKEARI-- 713 (904)
Q Consensus 642 ~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~l---a~~~~~~g~-- 713 (904)
..+.|++.. +-..+--.+-.+..||.+....|+..++.+..+-++++. |+.+.-++.. -.++...|+
T Consensus 468 l~e~Lkman-----aed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~ 542 (629)
T KOG2300|consen 468 LRETLKMAN-----AEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKG 542 (629)
T ss_pred HHHHHhhcc-----hhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcch
Confidence 888887541 112222234567788999999999999999999998883 5555544443 345566666
Q ss_pred hhHHHHHHHH
Q psy17306 714 FDRANTLFYV 723 (904)
Q Consensus 714 ~~~A~~~~~~ 723 (904)
.+...+.|++
T Consensus 543 ~~~e~e~~~~ 552 (629)
T KOG2300|consen 543 NEMENEAFRK 552 (629)
T ss_pred hhHHHHHHHH
Confidence 5555555543
No 216
>KOG1914|consensus
Probab=98.24 E-value=0.01 Score=62.14 Aligned_cols=137 Identities=12% Similarity=0.050 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhc
Q psy17306 584 LAEAYSNLGNVYKERGQ---LQEALENYRHAVRLKPDFI-DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIET 659 (904)
Q Consensus 584 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~ 659 (904)
+...++.++.--...-+ ++..-+.+++++.+...++ -+|.++-..-.+..-...|...|.++-+. ..
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~---------~r 397 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARED---------KR 397 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhc---------cC
Confidence 44455555554443333 7778888888888754433 35666666666666677888855544331 11
Q ss_pred CcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCC
Q psy17306 660 RPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 660 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 730 (904)
.+....+...+-. |...++..-|...|+-.|...++.+..-......+...++-..|...|++++.+...
T Consensus 398 ~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 398 TRHHVFVAAALME-YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred CcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 2333333333322 456799999999999999999999999999999999999999999999999998444
No 217
>KOG2796|consensus
Probab=98.20 E-value=4.4e-05 Score=71.51 Aligned_cols=137 Identities=15% Similarity=0.140 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc----C--cccHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQE-TNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ----N--PLLAEAY 79 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~~ 79 (904)
.+...+..+..+...|.|.-.+..+.++++.+ |..+.....+|.+.++.||.+.|..+|+++-+. + ..+..+.
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 34556677888889999999999999999988 568888999999999999999999999966442 1 2345677
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q psy17306 80 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL 143 (904)
Q Consensus 80 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 143 (904)
.+.+.++...+++..|...|.+++..+|.++.+-.+.|.|..-+|+..+|++..+.++...|..
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 7888899999999999999999999999999999999999999999999999999999999975
No 218
>KOG4507|consensus
Probab=98.20 E-value=0.0015 Score=68.49 Aligned_cols=107 Identities=21% Similarity=0.225 Sum_probs=90.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHH
Q psy17306 592 GNVYKERGQLQEALENYRHAVRLKPDFI-DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNL 670 (904)
Q Consensus 592 g~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~l 670 (904)
|..+...|+...|+.++..++-..|... ....+|+.++...|-..+|-.+ +.+++.+....+..++.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~-----------l~q~l~~~~sepl~~~~~ 682 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKL-----------LLQALAINSSEPLTFLSL 682 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHH-----------HHHHHhhcccCchHHHhc
Confidence 3444567999999999999999988743 4688999999999988999994 445555556667889999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy17306 671 GCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLK 709 (904)
Q Consensus 671 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 709 (904)
|+++..+.+.+.|++.|+.|+.++|+++.+-..|-.+-+
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999999999999999998887777665
No 219
>KOG1586|consensus
Probab=98.18 E-value=0.00043 Score=63.96 Aligned_cols=190 Identities=17% Similarity=0.192 Sum_probs=114.4
Q ss_pred hhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHH
Q psy17306 54 QCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK------PDFIDGYINLAAALVAAGDME 127 (904)
Q Consensus 54 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~ 127 (904)
-.+++++|.++|.++- ..|...++|..|=..|.++-... .+....+...+.||. .+++.
T Consensus 26 g~~k~eeAadl~~~Aa--------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~ 90 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAA--------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPE 90 (288)
T ss_pred CCcchHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChH
Confidence 3457888888777663 34444455555555555554431 112345555556654 45888
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHc-CCHHHHHHHHhhcCCCcchhhHHHHH
Q psy17306 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKAL-GRLDEAKNLHTENIKPVTMKVQNAIV 206 (904)
Q Consensus 128 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~ 206 (904)
+|+.++++++++..+ +|++..|.... ..+|.+|... .++++|+..|+++.+-.
T Consensus 91 eAv~cL~~aieIyt~--------------~Grf~~aAk~~---~~iaEiyEsdl~d~ekaI~~YE~Aae~y--------- 144 (288)
T KOG1586|consen 91 EAVNCLEKAIEIYTD--------------MGRFTMAAKHH---IEIAEIYESDLQDFEKAIAHYEQAAEYY--------- 144 (288)
T ss_pred HHHHHHHHHHHHHHh--------------hhHHHHHHhhh---hhHHHHHhhhHHHHHHHHHHHHHHHHHH---------
Confidence 899888888876433 33333332222 2333333322 44444444444221100
Q ss_pred HhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHH
Q psy17306 207 CNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI-------DGYINLAAALV 279 (904)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~ 279 (904)
+.-+.....-..+...+..-...++|.+|+..|++.....-++. +.++.-|.|+.
T Consensus 145 ------------------k~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl 206 (288)
T KOG1586|consen 145 ------------------KGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHL 206 (288)
T ss_pred ------------------cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhH
Confidence 11111222234566677777889999999999999887655543 34566788898
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcc
Q psy17306 280 AAGDMEQAVQAYVTALQYNPLLK 302 (904)
Q Consensus 280 ~~g~~~~A~~~~~~al~~~p~~~ 302 (904)
...+.-.+...+++....+|...
T Consensus 207 ~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 207 CKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred hcccHHHHHHHHHHHHhcCCccc
Confidence 88998889999999999999873
No 220
>KOG0985|consensus
Probab=98.16 E-value=0.016 Score=65.11 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 232 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 232 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
+.+..|..+|.+..+.|...+|++.|-++ +++..+.....+-.+.|.|++-+.++.-+-+.....
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~ 1166 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP 1166 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc
Confidence 34788999999999999999999988775 677888888888889999999998888777655443
No 221
>KOG2276|consensus
Probab=98.15 E-value=2.4e-06 Score=84.87 Aligned_cols=206 Identities=56% Similarity=0.980 Sum_probs=174.4
Q ss_pred hhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhh
Q psy17306 350 EKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAI 429 (904)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 429 (904)
+.+...+.+...+.+++++.+++.+|..+.++...++.+...++++.+|.+++.+.++.......++.++..++.|..+.
T Consensus 212 G~~yf~i~v~g~~~DlHSGvfGG~~hE~m~dL~~~ms~Lv~~~~~Ilipgiy~~vaplteeE~~~y~~I~f~~~e~~~~t 291 (473)
T KOG2276|consen 212 GVIYFQIEVEGPSKDLHSGVFGGVVHEAMNDLVLVMSSLVDIQGRILIPGIYEDVAPLTEEEDSIYDDIDFDVEEFKEAT 291 (473)
T ss_pred cceeEEEEEeecccccccccccchhHHHHHHHHHHHHHhcCcCCcEeccchhhhccCCChHHHhhhhcceeeHhhhhccc
Confidence 44455566677789999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcCh
Q psy17306 430 DHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSP 509 (904)
Q Consensus 430 ~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 509 (904)
.....+..++...++.||+|++++++++-.+++..|..+....+....+++++.|....+.....+..++...|..++.+
T Consensus 292 g~~~l~~~~k~~~l~~rWryPSLsihgIeGaFs~pG~kTVIP~kVigkfSiRlVP~md~e~verlv~~yl~~~f~~~nS~ 371 (473)
T KOG2276|consen 292 GSQMLPTDDKKRILMHRWRYPSLSIHGIEGAFSGPGAKTVIPAKVVGKFSIRLVPNMDPEQVERLVTRYLEKVFAELNSP 371 (473)
T ss_pred cccccccCchHHHhhhhcccCccceecccceeeCCCceEEeehhheeeeEEEecCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 87555555778899999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCC
Q psy17306 510 NKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGS 555 (904)
Q Consensus 510 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 555 (904)
++..-.......-.-.+|+++.....-+.+..+|..--..-..-|.
T Consensus 372 N~l~~~~~~~~~~Wv~d~~~~~y~a~krA~~~v~gvePd~~ReGgS 417 (473)
T KOG2276|consen 372 NKLKVSMGHAGAPWVSDPDDPHYLALKRAIETVYGVEPDFTREGGS 417 (473)
T ss_pred CceEEeecCCCCceecCCCchhHHHHHHHHHHhhCCCCCccccCCc
Confidence 8777666666666677888887775555555555444443333333
No 222
>KOG4642|consensus
Probab=98.10 E-value=3.9e-05 Score=70.89 Aligned_cols=99 Identities=15% Similarity=0.116 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
.+..+-..|..++....|..|+..|.+++..+|..+..+...+.|+++..+++.+.....++++++|+.+.+++.+|.+.
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 34444555566666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhCcHHHHHHHHHHHHhc
Q psy17306 87 KERGQLQEALENYRHAVRL 105 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~ 105 (904)
+....|++|+..++++..+
T Consensus 89 l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HhhccccHHHHHHHHHHHH
Confidence 6666666666666666443
No 223
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.06 E-value=8e-06 Score=55.87 Aligned_cols=44 Identities=25% Similarity=0.394 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNV 707 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 707 (904)
|.++..+|.+|..+|++++|+..|+++++.+|+++.++..+|.+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 35789999999999999999999999999999999999999863
No 224
>KOG4642|consensus
Probab=98.03 E-value=2.9e-05 Score=71.69 Aligned_cols=94 Identities=21% Similarity=0.220 Sum_probs=82.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHH
Q psy17306 589 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWS 668 (904)
Q Consensus 589 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~ 668 (904)
-.-|..++....|..|+.+|.++|.++|..+..+.+.+.++++..+++.+.. ...++++++|+.+.+++
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~-----------dcrralql~~N~vk~h~ 82 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEE-----------DCRRALQLDPNLVKAHY 82 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhh-----------hHHHHHhcChHHHHHHH
Confidence 3445666677788999999999999999988999999999999999999988 88888889999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 669 NLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 669 ~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
.+|.+......+++|+..+.+|..+
T Consensus 83 flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 83 FLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999999999999999999999776
No 225
>KOG1914|consensus
Probab=98.01 E-value=0.031 Score=58.82 Aligned_cols=122 Identities=11% Similarity=0.048 Sum_probs=87.3
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHH
Q psy17306 32 MQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111 (904)
Q Consensus 32 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 111 (904)
++-++.+|.+.++|+.+..-+..+ .+++....|++.+...|..+.+|.......+..++|+.-...|.+++..--+ .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 566788999999999998877666 8999999999999999999999999999999999999999999999865322 33
Q ss_pred HHH-HHHHHHHHcCCHHHHHHH----HHHHH---hcCCChhhHHHHHHHHHH
Q psy17306 112 GYI-NLAAALVAAGDMEQAVQA----YVTAL---QYNPDLYCVRSDLGNLLK 155 (904)
Q Consensus 112 ~~~-~la~~~~~~g~~~~A~~~----~~~al---~~~p~~~~~~~~la~~~~ 155 (904)
.|. .+..+-...|+...+... |+-++ ..++....+|...+..+.
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~ 139 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLE 139 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHH
Confidence 332 233333344444443333 33222 236666677777666654
No 226
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.99 E-value=5.2e-06 Score=52.58 Aligned_cols=32 Identities=34% Similarity=0.564 Sum_probs=20.7
Q ss_pred HHHHHhcCcCcHHHHHHHHHHHHHhcchhHHH
Q psy17306 687 FEKAVSLDPNFLDAYINLGNVLKEARIFDRAN 718 (904)
Q Consensus 687 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 718 (904)
|++|++++|+++.++++||.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666666666666666666666666666664
No 227
>KOG4507|consensus
Probab=97.97 E-value=0.00022 Score=74.47 Aligned_cols=99 Identities=20% Similarity=0.297 Sum_probs=85.3
Q ss_pred HHHHHH-HHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Q psy17306 13 ELAHRE-YQAGDYESAERHCMQLWRQETNNT--GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKER 89 (904)
Q Consensus 13 ~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 89 (904)
..|..| ...|+..+|..++..++-..|... .++..+|.++.+.|...+|--++..|+...|....-++.+|.++.+.
T Consensus 217 ~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml 296 (886)
T KOG4507|consen 217 NMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAML 296 (886)
T ss_pred HHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHH
Confidence 344444 468999999999999998877643 47889999999999999999999999998888777799999999999
Q ss_pred CcHHHHHHHHHHHHhcCCCCHH
Q psy17306 90 GQLQEALENYRHAVRLKPDFID 111 (904)
Q Consensus 90 g~~~~A~~~~~~al~~~p~~~~ 111 (904)
|.+...+.+|..+.+.+|....
T Consensus 297 ~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 297 GEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred hhhhhhhhhhhhhhccCcchhH
Confidence 9999999999999999887543
No 228
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.97 E-value=1.6e-05 Score=54.40 Aligned_cols=44 Identities=32% Similarity=0.416 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 628 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 628 (904)
+.+++.+|.+|...|++++|++.|+++++.+|+++.++..+|.+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 35789999999999999999999999999999999999998853
No 229
>KOG2610|consensus
Probab=97.95 E-value=0.0013 Score=64.22 Aligned_cols=125 Identities=16% Similarity=0.004 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc-CCCC---HHHHHHHHH
Q psy17306 43 GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-KPDF---IDGYINLAA 118 (904)
Q Consensus 43 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~ 118 (904)
+-...-+.+....|++.+|-...++.++..|.+..++..--.+++..|+...-...+++++.. +|+. .-+.-.++.
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 445555667788999999999999999999999999988889999999999999999999887 6655 445566788
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 119 ALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 119 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
++...|-|++|.+..+++++++|.+.-+....+.++...|++.++.+.+
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHH
Confidence 8899999999999999999999999999999999999999999998887
No 230
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.93 E-value=9.8e-06 Score=51.33 Aligned_cols=33 Identities=36% Similarity=0.667 Sum_probs=25.8
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy17306 607 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 639 (904)
Q Consensus 607 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 639 (904)
+|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 367788888888888888888888888887775
No 231
>KOG0545|consensus
Probab=97.92 E-value=0.00029 Score=65.42 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCcH----------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRL--------KPDFI----------DGYINLAAALVAAGDMEQAVQAYVTAL 646 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~----------~a~~~lg~~~~~~g~~~~A~~~~~~al 646 (904)
..++...|+-++..|+|.+|...|+.|+.. .|..+ ..+.|.+.|+...|+|-++++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevle------ 251 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLE------ 251 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHH------
Confidence 457788899999999999999999998754 35443 356777777777777777777
Q ss_pred hhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHH
Q psy17306 647 QYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700 (904)
Q Consensus 647 ~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 700 (904)
.....+..+|.+..+|+..|.++...=+..+|...|.++|+++|.-..+
T Consensus 252 -----h~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 252 -----HCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred -----HHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 6666667777777888888887777777778888888888887765443
No 232
>KOG2610|consensus
Probab=97.89 E-value=0.00032 Score=68.22 Aligned_cols=157 Identities=11% Similarity=-0.065 Sum_probs=132.1
Q ss_pred chhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCc---HHHH
Q psy17306 547 PDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-KPDF---IDGY 622 (904)
Q Consensus 547 ~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~---~~a~ 622 (904)
+.+....|++.+|...+.+ .+...|.+.-++..--.+++..|+...-...+++++-. +|+. ....
T Consensus 110 aai~~~~g~~h~a~~~wdk-----------lL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~ 178 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDK-----------LLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVH 178 (491)
T ss_pred HHHhhccccccHHHHHHHH-----------HHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHH
Confidence 3445677889999999999 99999999999888888999999999999999999987 6665 4556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC----cH
Q psy17306 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN----FL 698 (904)
Q Consensus 623 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~ 698 (904)
-.++..+...|-|++|.+ ...++++++|.+..+...++.++...|++.++.+...+.-..-.. ..
T Consensus 179 GmyaFgL~E~g~y~dAEk-----------~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlas 247 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEK-----------QADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLAS 247 (491)
T ss_pred HHHHhhHHHhccchhHHH-----------HHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHh
Confidence 677888999999999999 788888999999999999999999999999999999876554211 13
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 699 DAYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 699 ~a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
.-|.+-|.++.+.+.++.|+++|..-.
T Consensus 248 HNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 248 HNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 346778999999999999999996543
No 233
>KOG0545|consensus
Probab=97.89 E-value=0.00011 Score=68.05 Aligned_cols=103 Identities=14% Similarity=0.153 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------hCCCCH----------HHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWR--------QETNNT----------GVLLLLSSIHFQCRKLDKSAHFSTLAI 69 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~--------~~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~al 69 (904)
...+-+.|+.++..|+|.+|...|..++. ..|..+ ..+.+...|++..|+|-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 44677899999999999999999988853 234332 244455555566666666666666666
Q ss_pred hcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCH
Q psy17306 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 110 (904)
Q Consensus 70 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 110 (904)
..+|.|..+++..|.+....-+.++|...|.++++++|...
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 66666666666666666555556666666666666655543
No 234
>KOG1585|consensus
Probab=97.86 E-value=0.0033 Score=58.75 Aligned_cols=123 Identities=22% Similarity=0.214 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC-----CCCHHHH
Q psy17306 45 LLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL------AEAYSNLGNVYKERGQLQEALENYRHAVRLK-----PDFIDGY 113 (904)
Q Consensus 45 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~ 113 (904)
+..-+.+|...++|++|..++.++++-..++ +.++-..|.....+..+.++..+|+++..+. |+.+..-
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAma 113 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMA 113 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHH
Confidence 3344566677777777777777777543332 2345566666677777777777777777652 4433333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCh------hhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 114 INLAAALVAAGDMEQAVQAYVTALQYNPDL------YCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 114 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
...+-=....-++++|+..|++++.+-..+ .+.+...++++.+..++++|...+
T Consensus 114 leKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~ 173 (308)
T KOG1585|consen 114 LEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAF 173 (308)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHH
Confidence 333444445667788888888877653222 244556677777777777776666
No 235
>KOG0376|consensus
Probab=97.85 E-value=4.1e-05 Score=78.86 Aligned_cols=117 Identities=24% Similarity=0.290 Sum_probs=106.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy17306 624 NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYIN 703 (904)
Q Consensus 624 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 703 (904)
+-+.-.+.-+.++.|+. .+.++++++|+.+..+.+.+.++.+.+++..|+..+.+|++++|....+|+.
T Consensus 9 ~ean~~l~~~~fd~avd-----------lysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~r 77 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVD-----------LYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVR 77 (476)
T ss_pred hHHhhhcccchHHHHHH-----------HHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeee
Confidence 44566677788999999 7778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHH
Q psy17306 704 LGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKK 751 (904)
Q Consensus 704 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~ 751 (904)
.|.+....+++.+|...|++.....|++.++...+..|...+.+..-.
T Consensus 78 rg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe 125 (476)
T KOG0376|consen 78 RGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFE 125 (476)
T ss_pred ccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999888765433
No 236
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.84 E-value=3.2e-05 Score=49.53 Aligned_cols=34 Identities=32% Similarity=0.513 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 697 (904)
+.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999974
No 237
>KOG1586|consensus
Probab=97.82 E-value=0.0024 Score=59.25 Aligned_cols=185 Identities=16% Similarity=0.176 Sum_probs=111.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC-----cc-cHHHHHHHHHHHHHhCcHHHH
Q psy17306 22 GDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQN-----PL-LAEAYSNLGNVYKERGQLQEA 95 (904)
Q Consensus 22 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~~~~g~~~~A 95 (904)
+.+++|.++|.++ |++|....+|..|-..|-++-..+ .. .+..+...+.||. .++..+|
T Consensus 28 ~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eA 92 (288)
T KOG1586|consen 28 NKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEA 92 (288)
T ss_pred cchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHH
Confidence 4677777777666 455555566666666666655431 11 2345555555654 4599999
Q ss_pred HHHHHHHHhcCCCCHH------HHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCh------hhHHHHHHHHHHHcCChHH
Q psy17306 96 LENYRHAVRLKPDFID------GYINLAAALVAA-GDMEQAVQAYVTALQYNPDL------YCVRSDLGNLLKALGRLDE 162 (904)
Q Consensus 96 ~~~~~~al~~~p~~~~------~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~ 162 (904)
+.++++++++..+... .+..+|.+|..- .++++|+.+|+++-+..... -..+...+..-...++
T Consensus 93 v~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leq--- 169 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQ--- 169 (288)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHH---
Confidence 9999999988655433 355788888764 88999999999987654322 1223333333334444
Q ss_pred HHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHH
Q psy17306 163 AKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242 (904)
Q Consensus 163 A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~ 242 (904)
|.+|+.+|++.....-. ...++-. --..++.-|.
T Consensus 170 --------------------Y~~Ai~iyeqva~~s~~------------------------n~LLKys--~KdyflkAgL 203 (288)
T KOG1586|consen 170 --------------------YSKAIDIYEQVARSSLD------------------------NNLLKYS--AKDYFLKAGL 203 (288)
T ss_pred --------------------HHHHHHHHHHHHHHhcc------------------------chHHHhH--HHHHHHHHHH
Confidence 45555555431110000 0011110 1234556677
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCCHHH
Q psy17306 243 VYKERGQLQEALENYRHAVRLKPDFIDG 270 (904)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~ 270 (904)
+++...+.-.+...+++..+++|...+.
T Consensus 204 Chl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 204 CHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 8888788888888899999999986553
No 238
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.81 E-value=0.0018 Score=67.45 Aligned_cols=140 Identities=13% Similarity=0.193 Sum_probs=96.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHH
Q psy17306 15 AHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 94 (904)
Q Consensus 15 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 94 (904)
-...++..++..-++...++++.+|+.+.++..++.-. ..-..+|..+++++++.... .+.........|..-+
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~----~lg~s~~~~~~g~~~e 248 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEA----SLGKSQFLQHHGHFWE 248 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHH----hhchhhhhhcccchhh
Confidence 34456788888888888889999998888888777532 23457788888888765332 1111111112221111
Q ss_pred HHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 95 ALENYRHAVRLKPD--FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD--LYCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 95 A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
.....+. ...+...+|.|.+++|+.++|++.++..++.+|. +..++.+|..++...+.+.++..++
T Consensus 249 -------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 249 -------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred -------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 1111111 1446678999999999999999999999988775 4578899999999999999988777
No 239
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.80 E-value=0.0084 Score=61.87 Aligned_cols=183 Identities=15% Similarity=0.092 Sum_probs=129.5
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHH---hCcHHHHHHHHHHHH-hcCCCCHHH
Q psy17306 41 NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ----NPLLAEAYSNLGNVYKE---RGQLQEALENYRHAV-RLKPDFIDG 112 (904)
Q Consensus 41 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al-~~~p~~~~~ 112 (904)
++++...+-.+|....+|+.-+.+.+..-.+ -++...+.+.+|.++.+ .|+.++|+..+..++ ...+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 5677778888899999999999999887665 44567788899999998 999999999999954 556778999
Q ss_pred HHHHHHHHHH---------cCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHH-HHHHHHHhhHHHHHHcCC
Q psy17306 113 YINLAAALVA---------AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK-DLYCVRSDLGNLLKALGR 182 (904)
Q Consensus 113 ~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~l~~~~~~~g~ 182 (904)
+..+|.+|-. ....++|+.+|.++.+++|+. -.-.+++.++...|...+.. +.-.....+.....+.|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg- 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG- 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc-
Confidence 9999999853 234789999999999999654 44456666666666533332 22211111111111111
Q ss_pred HHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy17306 183 LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR 262 (904)
Q Consensus 183 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 262 (904)
....-.+...+-.++.+..-.|++++|+..+++++.
T Consensus 298 --------------------------------------------~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 298 --------------------------------------------SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred --------------------------------------------cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 111223345556677888889999999999999999
Q ss_pred hCCCCHH
Q psy17306 263 LKPDFID 269 (904)
Q Consensus 263 ~~p~~~~ 269 (904)
..|....
T Consensus 334 l~~~~W~ 340 (374)
T PF13281_consen 334 LKPPAWE 340 (374)
T ss_pred cCCcchh
Confidence 8766543
No 240
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.77 E-value=0.00077 Score=68.56 Aligned_cols=135 Identities=10% Similarity=0.081 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17306 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQ-CRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE 88 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 88 (904)
+|+.......+.+..+.|..+|.++++..+....+|...|.+-+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566667777777889999999999987666678899999999666 5666669999999999999999999999999999
Q ss_pred hCcHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChh
Q psy17306 89 RGQLQEALENYRHAVRLKPDFI---DGYINLAAALVAAGDMEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 89 ~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 144 (904)
.|+.+.|...|++++..-|... ..|......-...|+.+...+..+++.+..|++.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999998866654 5777778888888999999999999998888743
No 241
>KOG0376|consensus
Probab=97.74 E-value=5.9e-05 Score=77.74 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=78.4
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q psy17306 47 LLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 126 (904)
Q Consensus 47 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 126 (904)
..+...+..++|+.|+..|.++|+++|+++..+.+++.++.+.+++..|+..+.++++.+|....+|+..|.++...+.+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 34555666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy17306 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLK 155 (904)
Q Consensus 127 ~~A~~~~~~al~~~p~~~~~~~~la~~~~ 155 (904)
.+|...|+....+.|+++.+...+..+-.
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 77777777777777777766666655543
No 242
>KOG1585|consensus
Probab=97.72 E-value=0.0051 Score=57.56 Aligned_cols=205 Identities=13% Similarity=0.085 Sum_probs=117.9
Q ss_pred HHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHH
Q psy17306 498 YLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLA 577 (904)
Q Consensus 498 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~a 577 (904)
.-+..|....+++++...+..+.+..+.+.+.-... .+|...+.+......+.++..+|+++.. .+.+
T Consensus 36 kAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAA-------KayEqaamLake~~klsEvvdl~eKAs~----lY~E- 103 (308)
T KOG1585|consen 36 KAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAA-------KAYEQAAMLAKELSKLSEVVDLYEKASE----LYVE- 103 (308)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHH-
Confidence 445566677777777777766555555444332222 4556666666677777777777777221 1110
Q ss_pred HHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChh
Q psy17306 578 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPS 651 (904)
Q Consensus 578 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 651 (904)
.-.|+.+..-...+-=....-++++|+..|++++.+-... .+.+...+.++.+..++++|-..+.+-..
T Consensus 104 -~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~---- 178 (308)
T KOG1585|consen 104 -CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGV---- 178 (308)
T ss_pred -hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhh----
Confidence 1133333333333333344567888888888887763221 23455667777778888887776555432
Q ss_pred hHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----CcCcHHHHHHHHHHHHHhcchhHHHHHH
Q psy17306 652 CYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL----DPNFLDAYINLGNVLKEARIFDRANTLF 721 (904)
Q Consensus 652 ~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~la~~~~~~g~~~~A~~~~ 721 (904)
....+..-|+...++...-.+|....+|..|..+|+..-++ .|++..+..+|-..| ..|+.++...+.
T Consensus 179 -~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 179 -AADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred -HHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 11112333444455666666666677888888888887776 455566666665544 355666555554
No 243
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.71 E-value=7.4e-05 Score=47.86 Aligned_cols=34 Identities=47% Similarity=0.623 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 697 (904)
+.+|+.+|.++..+|++++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999875
No 244
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.67 E-value=0.0027 Score=64.62 Aligned_cols=134 Identities=16% Similarity=0.160 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy17306 78 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA-AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKA 156 (904)
Q Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 156 (904)
+|..+.....+.+..+.|...|.+|.+..+....+|...|.+-+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566666777777777888888888876555567777777777666 4555558888888888888777777777777777
Q ss_pred cCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchh---
Q psy17306 157 LGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLL--- 233 (904)
Q Consensus 157 ~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--- 233 (904)
.++.+.|..+| ++++..-+..
T Consensus 83 ~~d~~~aR~lf--------------------------------------------------------er~i~~l~~~~~~ 106 (280)
T PF05843_consen 83 LNDINNARALF--------------------------------------------------------ERAISSLPKEKQS 106 (280)
T ss_dssp TT-HHHHHHHH--------------------------------------------------------HHHCCTSSCHHHC
T ss_pred hCcHHHHHHHH--------------------------------------------------------HHHHHhcCchhHH
Confidence 77776666666 3444333332
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q psy17306 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 267 (904)
Q Consensus 234 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 267 (904)
...|......-...|+.+...++.+++.+..|..
T Consensus 107 ~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 107 KKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 2566667777777788888888888888877763
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0029 Score=61.53 Aligned_cols=153 Identities=19% Similarity=0.194 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHH--HHHH
Q psy17306 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLG--NVYK 87 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~ 87 (904)
.-+..+......|++.+|...|..++...|.+.++...++.++...|+.+.|...+...-....... .....+ ..+.
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-~~~l~a~i~ll~ 214 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-AHGLQAQIELLE 214 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH-HHHHHHHHHHHH
Confidence 4567788889999999999999999999999999999999999999999999988876432222211 111112 2222
Q ss_pred HhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHcCChHHHH
Q psy17306 88 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP--DLYCVRSDLGNLLKALGRLDEAK 164 (904)
Q Consensus 88 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~ 164 (904)
+.....+ ...+++.+..+|++..+.+.+|..+...|+.+.|.+.+-..++.+- .+..+...+-.++...|.-+.+.
T Consensus 215 qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 215 QAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred HHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 3222222 2345566778999999999999999999999999999999888754 34567777777777777555443
No 246
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.61 E-value=0.00012 Score=46.75 Aligned_cols=34 Identities=56% Similarity=0.845 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 618 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (904)
+.+|+++|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3578888888888888888888888888888864
No 247
>KOG0551|consensus
Probab=97.50 E-value=0.00086 Score=65.54 Aligned_cols=102 Identities=22% Similarity=0.252 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhc---Ccc-cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ---NPL-LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLA 117 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 117 (904)
+..+-.-|+-|+...+|..|..+|.+.|+. +|+ ++..|.++|.+.+..|+|..|+....+++.++|.+..+++.=|
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 556667889999999999999999999986 343 5678889999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCh
Q psy17306 118 AALVAAGDMEQAVQAYVTALQYNPDL 143 (904)
Q Consensus 118 ~~~~~~g~~~~A~~~~~~al~~~p~~ 143 (904)
.|++.+.++++|+.+.+..+.++-+.
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 99999999999999999988776544
No 248
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.48 E-value=0.00027 Score=45.19 Aligned_cols=34 Identities=38% Similarity=0.664 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 618 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (904)
+.+|+.+|.++...|++++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4578888888888888888888888888888874
No 249
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.48 E-value=0.003 Score=65.75 Aligned_cols=130 Identities=22% Similarity=0.204 Sum_probs=94.7
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhc------------Ccc-
Q psy17306 596 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIET------------RPD- 662 (904)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~------------~p~- 662 (904)
.+..+...-++.-++|++++|+.+++|..|+.=. ..-..+|.++|+++++.....+++.-.. .+.
T Consensus 179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~ 256 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTN 256 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccc
Confidence 4456677777777778888887777777666421 2335667777777776555433332111 111
Q ss_pred -hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHhcchhHHHHHHHHhhcc
Q psy17306 663 -FAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN--FLDAYINLGNVLKEARIFDRANTLFYVSSYF 727 (904)
Q Consensus 663 -~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 727 (904)
...+-..+|.|..++|+.++|++.|+..++..|. +..++.+|..++...+.+.++...+.+--+.
T Consensus 257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 1345678999999999999999999999998775 5679999999999999999999999886543
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.014 Score=56.93 Aligned_cols=161 Identities=22% Similarity=0.156 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChh-hHHHHHHHHH
Q psy17306 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLY-CVRSDLGNLL 154 (904)
Q Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~ 154 (904)
...-+.-+.-....|++.+|...|..++...|.+..+...++.|+...|+.+.|...+...-....+.. ........++
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 345556667778888899999999999998888888888899999999998888877765322211111 0100111222
Q ss_pred HHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhH
Q psy17306 155 KALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLA 234 (904)
Q Consensus 155 ~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (904)
.+.....+... +++.+..+|++.
T Consensus 214 ~qaa~~~~~~~---------------------------------------------------------l~~~~aadPdd~ 236 (304)
T COG3118 214 EQAAATPEIQD---------------------------------------------------------LQRRLAADPDDV 236 (304)
T ss_pred HHHhcCCCHHH---------------------------------------------------------HHHHHHhCCCCH
Confidence 22222211111 136667899999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17306 235 EAYSNLGNVYKERGQLQEALENYRHAVRLKP--DFIDGYINLAAALVAAGDMEQAVQAYVT 293 (904)
Q Consensus 235 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (904)
.+.+.+|..+...|+.+.|.+.+-..++.+. .+..+...+-.++...|.-+.+...+++
T Consensus 237 ~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 237 EAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 9999999999999999999999998888753 4456667777777777744444444443
No 251
>KOG0530|consensus
Probab=97.46 E-value=0.02 Score=54.40 Aligned_cols=231 Identities=13% Similarity=0.056 Sum_probs=150.4
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh-cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHH-HHH
Q psy17306 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQC-RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ-EAL 96 (904)
Q Consensus 19 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~ 96 (904)
.+...-..|+.+-..++..+|.+-.+|...-.++... .+..+-+++++.++..+|.|-.+|..+-.+....|++. .-+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 3455667788888888888888877777766666554 35677788888888888888888888888888888877 778
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH-cCChHHHHHHHHHHHhhHH
Q psy17306 97 ENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKA-LGRLDEAKDLYCVRSDLGN 175 (904)
Q Consensus 97 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~l~~ 175 (904)
+..+.++..+..+-.+|...-.+....+.++.-+.+..+.++.+--|-.+|...--+... .|-.+.+.
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~----------- 202 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAE----------- 202 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHH-----------
Confidence 888888888888888888888888888888888888888888776665555443222211 11111110
Q ss_pred HHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHH-hC--CHHH
Q psy17306 176 LLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE-RG--QLQE 252 (904)
Q Consensus 176 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g--~~~~ 252 (904)
....+.+..+.+...|++..+|..|..++.. .| .+..
T Consensus 203 ----------------------------------------le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~ 242 (318)
T KOG0530|consen 203 ----------------------------------------LERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSK 242 (318)
T ss_pred ----------------------------------------HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCch
Confidence 0111222347788899999999998888875 44 2444
Q ss_pred HHHHHHHHH-hhCCCCHHHHHHHHHHHH------HcCCHH---HHHHHHHHHH-hhCCC
Q psy17306 253 ALENYRHAV-RLKPDFIDGYINLAAALV------AAGDME---QAVQAYVTAL-QYNPL 300 (904)
Q Consensus 253 A~~~~~~al-~~~p~~~~~~~~la~~~~------~~g~~~---~A~~~~~~al-~~~p~ 300 (904)
-.......+ ......+..+-.+..+|. ..+.-+ +|...|+..- +.+|-
T Consensus 243 vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~Dpi 301 (318)
T KOG0530|consen 243 VVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPI 301 (318)
T ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcH
Confidence 444444444 333344555555555552 122222 4555565544 44553
No 252
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.45 E-value=0.01 Score=54.00 Aligned_cols=132 Identities=19% Similarity=0.076 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc---cHHHHHHHH
Q psy17306 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNT---GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL---LAEAYSNLG 83 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la 83 (904)
..+..+......+.. +.....++....+|.+. -+...++..+...|++++|+..++.++....+ ...+-.++|
T Consensus 55 ~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLA 133 (207)
T COG2976 55 AQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLA 133 (207)
T ss_pred HHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHH
Confidence 344444444444444 44444555555554432 34556788899999999999999999865433 245678899
Q ss_pred HHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q psy17306 84 NVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL 143 (904)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 143 (904)
.+...+|.+++|+..+....... -.+......|.++...|+-++|+..|+++++.+++.
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99999999999999887643211 123346678999999999999999999999987554
No 253
>KOG0551|consensus
Probab=97.44 E-value=0.0023 Score=62.71 Aligned_cols=99 Identities=22% Similarity=0.224 Sum_probs=87.3
Q ss_pred HHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhC---Cc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 539 TKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQN---PL-LAEAYSNLGNVYKERGQLQEALENYRHAVRL 614 (904)
Q Consensus 539 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~---p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (904)
++..|..-|+-|++..+|..|...|.+ .+... |+ ++..|.|+|.+....|+|..|+..+.+++..
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~-----------Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~ 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTE-----------GLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHH-----------HHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345678899999999999999999999 66653 32 5678999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 615 KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 648 (904)
Q Consensus 615 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 648 (904)
+|.+..++++-+.|++.+.++.+|....+..+.+
T Consensus 149 ~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 149 KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999966655543
No 254
>KOG1550|consensus
Probab=97.39 E-value=0.048 Score=61.48 Aligned_cols=268 Identities=20% Similarity=0.119 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHH-----cCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHhhc-----CHHHHHHHHHHHHhcCc
Q psy17306 9 IGLLELAHREYQ-----AGDYESAERHCMQLWRQ-----ETNNTGVLLLLSSIHFQCR-----KLDKSAHFSTLAIKQNP 73 (904)
Q Consensus 9 ~~l~~~a~~~~~-----~g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p 73 (904)
.+....|.+++. ..|.+.|+.+++.+... .-.++.+.+.+|.+|.... ++..|+.++.++...
T Consensus 245 ~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-- 322 (552)
T KOG1550|consen 245 EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-- 322 (552)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--
Confidence 445556666554 36899999999998761 1125668889999999853 778899999998876
Q ss_pred ccHHHHHHHHHHHHHhC---cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChhhH
Q psy17306 74 LLAEAYSNLGNVYKERG---QLQEALENYRHAVRLKPDFIDGYINLAAALVA----AGDMEQAVQAYVTALQYNPDLYCV 146 (904)
Q Consensus 74 ~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 146 (904)
.++.+.+.+|.++..-. ++..|..+|..|... .+..+.+.+|.||.. .-+...|..++.++.+.+ ++.+
T Consensus 323 g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A 398 (552)
T KOG1550|consen 323 GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSA 398 (552)
T ss_pred CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--Chhh
Confidence 44678889999987765 678999999999765 457889999999874 347899999999999887 4455
Q ss_pred HHHHHHHHHHc-CChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHH
Q psy17306 147 RSDLGNLLKAL-GRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTL 225 (904)
Q Consensus 147 ~~~la~~~~~~-~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 225 (904)
...++.++... +.++.+...+.....++.-.... ..+.-.......... .........+...+.+
T Consensus 399 ~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~---~a~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 464 (552)
T KOG1550|consen 399 AYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQS---NAAYLLDQSEEDLFS-----------RGVISTLERAFSLYSR 464 (552)
T ss_pred HHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhh---HHHHHHHhccccccc-----------cccccchhHHHHHHHH
Confidence 55555554433 67766665552111111110000 000000000000000 0000111112222222
Q ss_pred HhhcCchhHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhC
Q psy17306 226 AIKQNPLLAEAYSNLGNVYKER----GQLQEALENYRHAVRLKPDFIDGYINLAAALVAA---GDMEQAVQAYVTALQYN 298 (904)
Q Consensus 226 ~~~~~~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~ 298 (904)
+ ....+..+...+|.+|+.- .+++.|...|.++.... ....+++|.++..- .....|.+++.++...+
T Consensus 465 a--~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 465 A--AAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred H--HhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 2 2334567788888888754 46999999999998877 88899999988742 12788999999998876
Q ss_pred CCc
Q psy17306 299 PLL 301 (904)
Q Consensus 299 p~~ 301 (904)
...
T Consensus 540 ~~~ 542 (552)
T KOG1550|consen 540 SRA 542 (552)
T ss_pred chh
Confidence 655
No 255
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.36 E-value=0.47 Score=54.62 Aligned_cols=217 Identities=13% Similarity=0.001 Sum_probs=124.5
Q ss_pred hHHHHHHHHHHhcChhHHHHHHHhcccccccCCCC-cchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhH
Q psy17306 495 VLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEH-PNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHF 573 (904)
Q Consensus 495 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~ 573 (904)
+..+........++...+...++.........|.. ... ....+++..|..+...|+.+.|...|.+..-..
T Consensus 363 ~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~-----~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~--- 434 (608)
T PF10345_consen 363 LLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYES-----LYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLL--- 434 (608)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhh-----hhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhh---
Confidence 44455556667778888888888777777665552 111 112456888999999999999999998311100
Q ss_pred HHHHHHhCCch---HHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCcHHHHHHHHH-----HHH--HcCCHHHHH
Q psy17306 574 STLAIKQNPLL---AEAYSNLGNVYKERGQLQE----ALENYRHAVRLKPDFIDGYINLAA-----ALV--AAGDMEQAV 639 (904)
Q Consensus 574 ~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~~p~~~~a~~~lg~-----~~~--~~g~~~~A~ 639 (904)
...+....+.+ .-+..++..++...+.-.. +...+++.-....+.+..++..+. ++. ..-...++.
T Consensus 435 ~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k 514 (608)
T PF10345_consen 435 CEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAK 514 (608)
T ss_pred hhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHH
Confidence 00022223322 2355677777776665433 333333322221112222222222 222 122345888
Q ss_pred HHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCc---CcHHHHH------HHHHHHHH
Q psy17306 640 QAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP---NFLDAYI------NLGNVLKE 710 (904)
Q Consensus 640 ~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~------~la~~~~~ 710 (904)
..+.++++. +.+.+...--.+-++.-+|..++ .|+..+.......+..... +...... -+...+..
T Consensus 515 ~~l~~~L~~----~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~ 589 (608)
T PF10345_consen 515 RHLQEALKM----ANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEV 589 (608)
T ss_pred HHHHHHHHH----HHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 888887763 32333333444556777888877 7888887777777776533 3343333 45566788
Q ss_pred hcchhHHHHHHHHh
Q psy17306 711 ARIFDRANTLFYVS 724 (904)
Q Consensus 711 ~g~~~~A~~~~~~a 724 (904)
.|+.++|.....+.
T Consensus 590 ~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 590 QGDRDKAEEARQQL 603 (608)
T ss_pred cCcHHHHHHHHHHH
Confidence 89999998877654
No 256
>KOG1308|consensus
Probab=97.32 E-value=0.00018 Score=70.66 Aligned_cols=91 Identities=24% Similarity=0.241 Sum_probs=84.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHH
Q psy17306 594 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCV 673 (904)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~ 673 (904)
-....|.++.|++.|..++.++|.....+...+.++..+++...|+. .+..+++++|+.+.-|-..|.+
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~air-----------D~d~A~ein~Dsa~~ykfrg~A 191 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIR-----------DCDFAIEINPDSAKGYKFRGYA 191 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhh-----------hhhhhhccCcccccccchhhHH
Confidence 34566889999999999999999999999999999999999999999 8888889999999999999999
Q ss_pred HHhCCCHHHHHHHHHHHHhcCc
Q psy17306 674 FNAQGEIWLAIHHFEKAVSLDP 695 (904)
Q Consensus 674 ~~~~g~~~~A~~~~~~al~~~p 695 (904)
...+|++++|..++..+++++-
T Consensus 192 ~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 192 ERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred HHHhhchHHHHHHHHHHHhccc
Confidence 9999999999999999999963
No 257
>KOG1258|consensus
Probab=97.31 E-value=0.37 Score=52.15 Aligned_cols=172 Identities=10% Similarity=0.018 Sum_probs=112.7
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCcHHH
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-KPDFIDG 621 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a 621 (904)
|....+.....|+++...-.|++ ++--.......|...+......|+.+-|-..+.++.++ .|..+..
T Consensus 300 w~~yLdf~i~~g~~~~~~~l~er-----------cli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i 368 (577)
T KOG1258|consen 300 WRYYLDFEITLGDFSRVFILFER-----------CLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPII 368 (577)
T ss_pred HHHHhhhhhhcccHHHHHHHHHH-----------HHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHH
Confidence 35555566677888888888887 65555566778888888888888888888878777776 4666777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHH---HHHHHHhc--CcC
Q psy17306 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH---HFEKAVSL--DPN 696 (904)
Q Consensus 622 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~---~~~~al~~--~p~ 696 (904)
...-+.+....|++..|...+++.. +.-|+...+-........+.|+.+.+.. .+.....- ++.
T Consensus 369 ~L~~a~f~e~~~n~~~A~~~lq~i~-----------~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~ 437 (577)
T KOG1258|consen 369 HLLEARFEESNGNFDDAKVILQRIE-----------SEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNG 437 (577)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH-----------hhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcc
Confidence 7777777788888888888555433 3336666666666666777777777773 33222222 111
Q ss_pred -cHHHHHHHHHH-HHHhcchhHHHHHHHHhhcccCChhhHHH
Q psy17306 697 -FLDAYINLGNV-LKEARIFDRANTLFYVSSYFMITDEDIDV 736 (904)
Q Consensus 697 -~~~a~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 736 (904)
....+...+.. +.-.++.+.|..++.++.+..+.+..+..
T Consensus 438 i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~ 479 (577)
T KOG1258|consen 438 ILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYL 479 (577)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHH
Confidence 13334444443 34556777888888888887766544433
No 258
>KOG0985|consensus
Probab=97.30 E-value=0.53 Score=53.75 Aligned_cols=194 Identities=19% Similarity=0.205 Sum_probs=114.7
Q ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17306 56 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135 (904)
Q Consensus 56 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 135 (904)
+..+.|.++.++. +.+..|..+|.+..+.|...+|++.|-++ +++..+.....+..+.|.|++-++++..
T Consensus 1089 ~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLM 1158 (1666)
T ss_pred hhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4444444444432 34667888888888888888888888664 5666777777777888888888888777
Q ss_pred HHhcCCChhhHHHHHHHHHHHcCChHHHHHHH-----HHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhc
Q psy17306 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY-----CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYG 210 (904)
Q Consensus 136 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 210 (904)
+.+.-.+ +.+-..|...|.+.++..+-.+.+ ......|+-....|.|+.|.-+|.
T Consensus 1159 aRkk~~E-~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~------------------- 1218 (1666)
T KOG0985|consen 1159 ARKKVRE-PYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS------------------- 1218 (1666)
T ss_pred HHHhhcC-ccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH-------------------
Confidence 7654221 223334445555666666555544 123344555555566665555553
Q ss_pred CCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-------------------------C
Q psy17306 211 GRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-------------------------P 265 (904)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------------------p 265 (904)
+..-|..++..+..+|+|..|...-++|-... -
T Consensus 1219 ----------------------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~ii 1276 (1666)
T KOG0985|consen 1219 ----------------------NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNII 1276 (1666)
T ss_pred ----------------------HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEE
Confidence 23344555666666666666666555542210 0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 266 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
-+++-+-.+...|...|-+++-+..++.++.+...+
T Consensus 1277 vhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAH 1312 (1666)
T KOG0985|consen 1277 VHADELEELIEYYQDRGYFEELISLLEAGLGLERAH 1312 (1666)
T ss_pred EehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHH
Confidence 112334455666677777777777777776655544
No 259
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.27 E-value=0.0049 Score=56.02 Aligned_cols=64 Identities=20% Similarity=0.121 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcc
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYF 727 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 727 (904)
..++..++..+...|++++|+..+++++..+|.+..++..+-.+|...|+..+|+..|++....
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3567788899999999999999999999999999999999999999999999999999888553
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.25 E-value=0.0046 Score=67.81 Aligned_cols=117 Identities=15% Similarity=0.042 Sum_probs=67.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHhCcHHHHH
Q psy17306 21 AGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL----LAEAYSNLGNVYKERGQLQEAL 96 (904)
Q Consensus 21 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 96 (904)
..+.+.|.+++....+..|+.+-.++..|+++...|+.++|++.|++++..... ....++.+|.++..+.+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 344556666666666666666666666666666666666666666666542221 2335566666666666666666
Q ss_pred HHHHHHHhcCCCCH-HHHHHHHHHHHHcCCH-------HHHHHHHHHHH
Q psy17306 97 ENYRHAVRLKPDFI-DGYINLAAALVAAGDM-------EQAVQAYVTAL 137 (904)
Q Consensus 97 ~~~~~al~~~p~~~-~~~~~la~~~~~~g~~-------~~A~~~~~~al 137 (904)
.+|.+..+.+.-.. ...+..|.|+...|+. ++|.+.+.++-
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 66666666543322 2334455566666666 55555555443
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.25 E-value=0.012 Score=64.55 Aligned_cols=118 Identities=19% Similarity=0.136 Sum_probs=91.1
Q ss_pred cCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc----HHHHHHHHHH
Q psy17306 553 GGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF----IDGYINLAAA 628 (904)
Q Consensus 553 ~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~ 628 (904)
....+.|...+.. .....|+.+-.++..|+++...|+.++|++.|++++...... .-.++.+|++
T Consensus 246 ~~~~~~a~~lL~~-----------~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~ 314 (468)
T PF10300_consen 246 DVPLEEAEELLEE-----------MLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWC 314 (468)
T ss_pred CCCHHHHHHHHHH-----------HHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHH
Confidence 4556777777777 889999999999999999999999999999999998644332 3478899999
Q ss_pred HHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcc-hHHHHHHHHHHHHhCCCH-------HHHHHHHHHHHh
Q psy17306 629 LVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD-FAVAWSNLGCVFNAQGEI-------WLAIHHFEKAVS 692 (904)
Q Consensus 629 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~-~~~a~~~lg~~~~~~g~~-------~~A~~~~~~al~ 692 (904)
+..+++|++|..+|....+ .+.- .+...+..|.|+...|+. ++|.+.|.++-.
T Consensus 315 ~~~~~~w~~A~~~f~~L~~-----------~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 315 HMFQHDWEEAAEYFLRLLK-----------ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHchHHHHHHHHHHHHh-----------ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999999999996655443 3222 344566778888899988 555555555533
No 262
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.23 E-value=0.02 Score=59.13 Aligned_cols=144 Identities=21% Similarity=0.150 Sum_probs=98.4
Q ss_pred hhCchhHhh---cCChhHHHHHHHHHhhhhhhHHHHHHHh-CCchHHHHHHHHHHHHH---------cCCHHHHHHHHHH
Q psy17306 544 NVEPDLTRE---GGSIPITLTFECRKLDKSAHFSTLAIKQ-NPLLAEAYSNLGNVYKE---------RGQLQEALENYRH 610 (904)
Q Consensus 544 ~~l~~~~~~---~~~~~~A~~~~~~~l~~a~~~~~~al~~-~p~~~~~~~~lg~~~~~---------~g~~~~A~~~~~~ 610 (904)
...|.++.+ .|+.++|+..+.. ++.. .+.+++++..+|.+|.. ....++|+..|.+
T Consensus 183 ~~yafALnRrn~~gdre~Al~il~~-----------~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~k 251 (374)
T PF13281_consen 183 FQYAFALNRRNKPGDREKALQILLP-----------VLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRK 251 (374)
T ss_pred HHHHHHHhhcccCCCHHHHHHHHHH-----------HHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHH
Confidence 556666666 8999999999887 4443 55778999999999843 2247899999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy17306 611 AVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL-QYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEK 689 (904)
Q Consensus 611 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 689 (904)
+.+++|+ ...-.|++.++...|.-.+.....++.. ..+.-...+.....-.+.+.+-.++.+..-.|++++|+.++++
T Consensus 252 gFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~ 330 (374)
T PF13281_consen 252 GFEIEPD-YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEK 330 (374)
T ss_pred HHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999965 4566778888888876444333222222 1110011122222334456667788888889999999999999
Q ss_pred HHhcCcCcHH
Q psy17306 690 AVSLDPNFLD 699 (904)
Q Consensus 690 al~~~p~~~~ 699 (904)
++.+.|..-.
T Consensus 331 ~~~l~~~~W~ 340 (374)
T PF13281_consen 331 AFKLKPPAWE 340 (374)
T ss_pred HhhcCCcchh
Confidence 9998776543
No 263
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.21 E-value=0.0052 Score=55.77 Aligned_cols=104 Identities=22% Similarity=0.218 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHH
Q psy17306 6 QLGIGLLELAHREYQAGDYESAERHCMQLWRQETN---NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNL 82 (904)
Q Consensus 6 ~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 82 (904)
....+.+.+|..+...|++++|+..++.++....+ .+-+-.+++.+....|++++|+..++.....+ -.+......
T Consensus 87 Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elr 165 (207)
T COG2976 87 YAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELR 165 (207)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHh
Confidence 44567889999999999999999999999865443 24567789999999999999999998654321 134456789
Q ss_pred HHHHHHhCcHHHHHHHHHHHHhcCCCCH
Q psy17306 83 GNVYKERGQLQEALENYRHAVRLKPDFI 110 (904)
Q Consensus 83 a~~~~~~g~~~~A~~~~~~al~~~p~~~ 110 (904)
|.++...|+-++|+..|++++..+++.+
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 9999999999999999999999975543
No 264
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.21 E-value=0.0067 Score=55.11 Aligned_cols=117 Identities=23% Similarity=0.158 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHH-HHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDK-SAHFSTLAIKQNPLLAEAYSNLGNVYK 87 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~ 87 (904)
..+...|......|+...++..+.+++.......-.-..- ..|-. ....++. ....+...++..+.
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~------~~~~~~~~l~~~~~ 73 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLRE------LYLDALERLAEALL 73 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 3456677778888999999999999987654321100000 11111 1112221 12346677788888
Q ss_pred HhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 88 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 138 (904)
Q Consensus 88 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 138 (904)
..|++++|+..+++++..+|.+..++..+..++...|+..+|+..|++...
T Consensus 74 ~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 74 EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888887754
No 265
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.18 E-value=0.00058 Score=43.57 Aligned_cols=32 Identities=38% Similarity=0.633 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC
Q psy17306 665 VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696 (904)
Q Consensus 665 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 696 (904)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57888999999999999999999999988884
No 266
>KOG1308|consensus
Probab=97.14 E-value=0.00069 Score=66.63 Aligned_cols=91 Identities=23% Similarity=0.283 Sum_probs=62.3
Q ss_pred HHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17306 51 IHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130 (904)
Q Consensus 51 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 130 (904)
-.+..|.+++|++.|..++.++|..+..+..++.++.++++...|+..+..++.++|+....+-..|.....+|+|++|.
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 34455667777777777777777777777777777777777777777777777777776666666666666677777777
Q ss_pred HHHHHHHhcCC
Q psy17306 131 QAYVTALQYNP 141 (904)
Q Consensus 131 ~~~~~al~~~p 141 (904)
..+..+.+++-
T Consensus 203 ~dl~~a~kld~ 213 (377)
T KOG1308|consen 203 HDLALACKLDY 213 (377)
T ss_pred HHHHHHHhccc
Confidence 77777766643
No 267
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.13 E-value=0.12 Score=55.45 Aligned_cols=169 Identities=22% Similarity=0.243 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----hhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHH
Q psy17306 110 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPD----LYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDE 185 (904)
Q Consensus 110 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~ 185 (904)
...+...+.+..+.|.++.|...+.++...++. .+.+.+..+.++...|+..+|+..+.....-
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~------------ 213 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC------------ 213 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Confidence 456677777777777777777777777665421 3456666677777777777776665111110
Q ss_pred HHHHHhhcCCCcchhhHHHHH-HhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHh------CCHHHHHHHHH
Q psy17306 186 AKNLHTENIKPVTMKVQNAIV-CNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKER------GQLQEALENYR 258 (904)
Q Consensus 186 A~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~------g~~~~A~~~~~ 258 (904)
.+................ ......... ..........+.++..+|...... +..++++..|.
T Consensus 214 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~ 282 (352)
T PF02259_consen 214 ---RLSKNIDSISNAELKSGLLESLEVISST--------NLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYK 282 (352)
T ss_pred ---HhhhccccccHHHHhhcccccccccccc--------chhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 000000000000000000 000000000 000111223367788888888888 89999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhhCCCc
Q psy17306 259 HAVRLKPDFIDGYINLAAALVAAGD-----------------MEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 259 ~al~~~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~~~p~~ 301 (904)
++++.+|....+|+.+|..+...=+ ...|+..|-+++...+..
T Consensus 283 ~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~ 342 (352)
T PF02259_consen 283 EATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY 342 (352)
T ss_pred HHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence 9999999999999999888764421 134788888888888875
No 268
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.04 E-value=0.91 Score=51.62 Aligned_cols=173 Identities=13% Similarity=0.001 Sum_probs=97.1
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhh----CCC
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ--LQEALENYRHAVRL----KPD 617 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~----~p~ 617 (904)
..+|.+..-.|++.+|..+.+...+.+.. .+..+-...+....+.++..+|+ +.+....|...-.. .|-
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~-----~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~ 575 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMARQ-----HDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPR 575 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHH-----cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccc
Confidence 55666777788888888888873333221 11112234556667888888884 33333444333222 344
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhc--C
Q psy17306 618 FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAV-AWSNLGCVFNAQGEIWLAIHHFEKAVSL--D 694 (904)
Q Consensus 618 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~~--~ 694 (904)
+.......+.++...-+++.+.......++.. ......|.... +++.|+.++...|+.++|.........+ .
T Consensus 576 ~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~-----~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 576 HEFLVRIRAQLLRAWLRLDLAEAEARLGIEVG-----SVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred chhHHHHHHHHHHHHHHHhhhhHHhhhcchhh-----hhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 33333333333333333666666444444321 11122333333 3358999999999999999999988777 2
Q ss_pred cC---cHHHHHH--HHHHHHHhcchhHHHHHHHHhhc
Q psy17306 695 PN---FLDAYIN--LGNVLKEARIFDRANTLFYVSSY 726 (904)
Q Consensus 695 p~---~~~a~~~--la~~~~~~g~~~~A~~~~~~a~~ 726 (904)
+. +..+... .......+|+..+|.....+...
T Consensus 651 ~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~~ 687 (894)
T COG2909 651 GQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSGD 687 (894)
T ss_pred CCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhccC
Confidence 21 1112222 22234678899999988888543
No 269
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.98 E-value=0.58 Score=48.45 Aligned_cols=76 Identities=16% Similarity=0.122 Sum_probs=57.3
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy17306 64 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 139 (904)
Q Consensus 64 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 139 (904)
-++.-++.+|++...|+.+..-+..+|.+++-.+.|++...-.|-.+.+|...-..-...+++..-...|-+++..
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 4555567788888888888888888888888888888888877877777766655555566777777777777654
No 270
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.96 E-value=0.26 Score=52.68 Aligned_cols=131 Identities=21% Similarity=0.226 Sum_probs=103.0
Q ss_pred CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChh-h---
Q psy17306 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP----DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS-C--- 652 (904)
Q Consensus 581 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~--- 652 (904)
.......|...+.+....|+++.|...+.++...++ ..+.+.+..+.++...|+..+|+..++..++.... .
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 445678899999999999999999999999988652 24678888899999999999999988888772111 0
Q ss_pred -----HHH--------------hhhcCcchHHHHHHHHHHHHhC------CCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy17306 653 -----YLK--------------AIETRPDFAVAWSNLGCVFNAQ------GEIWLAIHHFEKAVSLDPNFLDAYINLGNV 707 (904)
Q Consensus 653 -----~~~--------------~l~~~p~~~~a~~~lg~~~~~~------g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 707 (904)
+.. ........+.++..+|...... +..++++..|.++++++|+...+++.+|..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 000 0011123467888888888888 899999999999999999999999999998
Q ss_pred HHHh
Q psy17306 708 LKEA 711 (904)
Q Consensus 708 ~~~~ 711 (904)
+...
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 8654
No 271
>KOG1550|consensus
Probab=96.93 E-value=0.79 Score=51.89 Aligned_cols=174 Identities=22% Similarity=0.179 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcC---
Q psy17306 58 LDKSAHFSTLAIKQNPLLAEAYSNLGNVYKER-----GQLQEALENYRHAVRL-----KPDFIDGYINLAAALVAAG--- 124 (904)
Q Consensus 58 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g--- 124 (904)
...|..+++.+.+. .+..+...+|.+|..- .+.+.|+.+|+.+... .-.++.+.+.+|.+|....
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 46788888877654 4577778888887654 6889999999988771 1124557788888888743
Q ss_pred --CHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcC---ChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcch
Q psy17306 125 --DMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALG---RLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTM 199 (904)
Q Consensus 125 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 199 (904)
++..|+.+|.++-... ++.+.+.+|.++.... +...|..+| .
T Consensus 306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy-----------------------~-------- 352 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYY-----------------------S-------- 352 (552)
T ss_pred cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHH-----------------------H--------
Confidence 6778888888887764 4566777777776544 334455444 1
Q ss_pred hhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy17306 200 KVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE----RGQLQEALENYRHAVRLKPDFIDGYINLA 275 (904)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 275 (904)
.+.. -....+.+.+|.+|.. .-+...|..++.++.+.+ ++.+...++
T Consensus 353 -------------------------~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~ 403 (552)
T KOG1550|consen 353 -------------------------LAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLG 403 (552)
T ss_pred -------------------------HHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHH
Confidence 2222 2235666777776653 246778888888888776 445455555
Q ss_pred HHHHHc-CCHHHHHHHHHHHH
Q psy17306 276 AALVAA-GDMEQAVQAYVTAL 295 (904)
Q Consensus 276 ~~~~~~-g~~~~A~~~~~~al 295 (904)
..+..- +.+..+.-.+....
T Consensus 404 ~~~~~g~~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 404 AFYEYGVGRYDTALALYLYLA 424 (552)
T ss_pred HHHHHccccccHHHHHHHHHH
Confidence 544432 56655555544443
No 272
>KOG0890|consensus
Probab=96.87 E-value=1.3 Score=55.85 Aligned_cols=145 Identities=17% Similarity=0.160 Sum_probs=104.0
Q ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCc
Q psy17306 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP 661 (904)
Q Consensus 582 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p 661 (904)
....+.|...|++....|+++.|....-.|.+.. -+.+....|..+...|+-..|+..+++.++.+-..+..-.+..|
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p 1744 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTP 1744 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccc
Confidence 3457899999999999999999999999988876 46899999999999999999999999998654221111101112
Q ss_pred ch------HHHHHHHHHHHHhCCCH--HHHHHHHHHHHhcCcCcHHHHHHHHHHHH------------HhcchhH---HH
Q psy17306 662 DF------AVAWSNLGCVFNAQGEI--WLAIHHFEKAVSLDPNFLDAYINLGNVLK------------EARIFDR---AN 718 (904)
Q Consensus 662 ~~------~~a~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~a~~~la~~~~------------~~g~~~~---A~ 718 (904)
.. ..+...++......|++ ..-+.+|..+.++.|.....++.+|..|. +.|++.. |+
T Consensus 1745 ~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~ 1824 (2382)
T KOG0890|consen 1745 QSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAI 1824 (2382)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHH
Confidence 11 23455566666666664 45678999999999988888888885552 3455554 55
Q ss_pred HHHHHhhccc
Q psy17306 719 TLFYVSSYFM 728 (904)
Q Consensus 719 ~~~~~a~~~~ 728 (904)
-.|-+++..+
T Consensus 1825 ~~~~~sl~yg 1834 (2382)
T KOG0890|consen 1825 YFFGRALYYG 1834 (2382)
T ss_pred HHHHHHHHhc
Confidence 5555665433
No 273
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.86 E-value=0.0019 Score=41.16 Aligned_cols=32 Identities=50% Similarity=0.915 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17306 586 EAYSNLGNVYKERGQLQEALENYRHAVRLKPD 617 (904)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 617 (904)
.+|+.+|.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46778888888888888888888888888774
No 274
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.78 E-value=1.6 Score=50.43 Aligned_cols=288 Identities=16% Similarity=0.038 Sum_probs=162.4
Q ss_pred hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC--CCH----HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc---c-
Q psy17306 7 LGIGLLELAHREY-QAGDYESAERHCMQLWRQET--NNT----GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL---L- 75 (904)
Q Consensus 7 ~~~~l~~~a~~~~-~~g~~~~A~~~~~~~l~~~p--~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~- 75 (904)
.+...+.+|.+++ ...+++.|..++++++.... +-. .+.+.++.++.+.+... |...+++.++...+ .
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 4677889999987 78899999999999976553 322 34556788888888777 99999998886433 2
Q ss_pred HHHHHHH--HHHHHHhCcHHHHHHHHHHHHhcC--CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhc------CC
Q psy17306 76 AEAYSNL--GNVYKERGQLQEALENYRHAVRLK--PDFID----GYINLAAALVAAGDMEQAVQAYVTALQY------NP 141 (904)
Q Consensus 76 ~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~------~p 141 (904)
....+.+ ...+...+++..|+..++...... +.++. +....+.++...+..+++++..+++... +|
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 2222222 223333479999999999988765 34433 2344456666778788888888877432 11
Q ss_pred ----ChhhHHHHHHHH--HHHcCChHHHHHHHHHHHhhHHHHHHcCC-----HHHHHHHHh-----------hcCCCcch
Q psy17306 142 ----DLYCVRSDLGNL--LKALGRLDEAKDLYCVRSDLGNLLKALGR-----LDEAKNLHT-----------ENIKPVTM 199 (904)
Q Consensus 142 ----~~~~~~~~la~~--~~~~~~~~~A~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~-----------~~~~~~~~ 199 (904)
....++..+-.+ ....|++..+...++.....-........ .+-.+.+-. -.+...+.
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~ 296 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPK 296 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCH
Confidence 123344444433 34567776777666333322222222110 000000000 00000011
Q ss_pred hhHHHHH------Hhhc-CCCcch----HHHhhHHHHHh-h--cCch----------------hHHHHHHHHHHHHHhCC
Q psy17306 200 KVQNAIV------CNYG-GRKPTT----LESAHFSTLAI-K--QNPL----------------LAEAYSNLGNVYKERGQ 249 (904)
Q Consensus 200 ~~~~~~~------~~~~-~~~~~~----~~a~~~~~~~~-~--~~~~----------------~~~~~~~lg~~~~~~g~ 249 (904)
.....+. .... +..+.. .+++...++.. . ..+. ........+.+.+-.++
T Consensus 297 ~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~ 376 (608)
T PF10345_consen 297 EELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD 376 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 1111111 1111 111111 12222223332 0 0000 12344556777778899
Q ss_pred HHHHHHHHHHHHhhC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 250 LQEALENYRHAVRLK---PD------FIDGYINLAAALVAAGDMEQAVQAYVTAL 295 (904)
Q Consensus 250 ~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al 295 (904)
+..|......+.... |. .+..++..|..+...|+.+.|...|.+..
T Consensus 377 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~ 431 (608)
T PF10345_consen 377 WSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPR 431 (608)
T ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhH
Confidence 999998888777652 22 36678889999999999999999998544
No 275
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.73 E-value=0.95 Score=47.21 Aligned_cols=62 Identities=11% Similarity=0.004 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHH
Q psy17306 682 LAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEA 743 (904)
Q Consensus 682 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 743 (904)
+-+.+-++.+-.+.+++.++...+.--+...+|.+|++++++.-..+...+.+...+..|..
T Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (831)
T PRK15180 760 EHLDYAKKLLVFDSENAYALKYAALNAMHLRDYTQALQYWQRLEKVNGPTEPVTRQISTCIT 821 (831)
T ss_pred hhHhhhhhheeeccchHHHHHHHHhhHhHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHH
Confidence 34555667777788888888887888888999999999999988877655666666666664
No 276
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.72 E-value=0.11 Score=42.79 Aligned_cols=104 Identities=21% Similarity=0.245 Sum_probs=76.8
Q ss_pred HHHHHHHHH--HHHcCCHHHHHHHHHHHHhhCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChh
Q psy17306 586 EAYSNLGNV--YKERGQLQEALENYRHAVRLKPD------------FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS 651 (904)
Q Consensus 586 ~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 651 (904)
.+|..|+.. ...-|-|++|...++++.+.... +.-++..|+..+..+|+|++++..-+.+|.
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~---- 83 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR---- 83 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH----
Confidence 445555444 34568899999999999987422 234677889999999999999999888888
Q ss_pred hHHHhhhcCcchHHHH----HHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 652 CYLKAIETRPDFAVAW----SNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 652 ~~~~~l~~~p~~~~a~----~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
.|.+--+++.+....| ++.|.++..+|+.++|+..|+.+-+.
T Consensus 84 YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 84 YFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 7777778888776554 57788888899999999999888664
No 277
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.70 E-value=0.17 Score=52.64 Aligned_cols=135 Identities=10% Similarity=0.112 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH---cCChHHHHHHHH
Q psy17306 92 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKA---LGRLDEAKDLYC 168 (904)
Q Consensus 92 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~ 168 (904)
.+.-+..+++|++.+|++...+..+-.+.....+.++..+-+++++..+|++...|..+-..... .-.++.....|
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y- 125 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY- 125 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH-
Confidence 45667788888888888888888888888888888888888999998888888777766555443 22344444444
Q ss_pred HHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhC
Q psy17306 169 VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERG 248 (904)
Q Consensus 169 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 248 (904)
.+++..+........ ... ............++..+.......|
T Consensus 126 ---------------~~~l~~L~~~~~~~~------------~~~----------~~~~~~e~~~l~v~~r~~~fl~~aG 168 (321)
T PF08424_consen 126 ---------------EKCLRALSRRRSGRM------------TSH----------PDLPELEEFMLYVFLRLCRFLRQAG 168 (321)
T ss_pred ---------------HHHHHHHHHhhcccc------------ccc----------cchhhHHHHHHHHHHHHHHHHHHCC
Confidence 233322221111000 000 0000111122455666777778888
Q ss_pred CHHHHHHHHHHHHhhC
Q psy17306 249 QLQEALENYRHAVRLK 264 (904)
Q Consensus 249 ~~~~A~~~~~~al~~~ 264 (904)
..+.|+..++..++.+
T Consensus 169 ~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 169 YTERAVALWQALLEFN 184 (321)
T ss_pred chHHHHHHHHHHHHHH
Confidence 8888888888888875
No 278
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.69 E-value=0.71 Score=47.06 Aligned_cols=124 Identities=14% Similarity=0.089 Sum_probs=91.1
Q ss_pred HHHcCCHHHHHHHHHHHHhhC----CCC----HHHHHHHHHHHHhhc-CHHHHHHHHHHHHhc----Cc------c----
Q psy17306 18 EYQAGDYESAERHCMQLWRQE----TNN----TGVLLLLSSIHFQCR-KLDKSAHFSTLAIKQ----NP------L---- 74 (904)
Q Consensus 18 ~~~~g~~~~A~~~~~~~l~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~----~p------~---- 74 (904)
.+.+|+++.|..++.++-... |+. ...++..|...+..+ +++.|...++++.+. .+ +
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467899999999999885533 332 356777888888888 999999999999876 21 1
Q ss_pred cHHHHHHHHHHHHHhCcHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy17306 75 LAEAYSNLGNVYKERGQLQ---EALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 141 (904)
Q Consensus 75 ~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 141 (904)
...++..++.+|...+.++ +|....+.+-.-.|+.+..+...-.++...++.+.+.+.+.+++..-+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 2346778889998887765 455555555555687777775555666668899999999999887643
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.68 E-value=0.003 Score=40.72 Aligned_cols=28 Identities=39% Similarity=0.621 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 666 AWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 666 a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
+|.+||.+|..+|++++|+++|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667777777888888888888776554
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.61 E-value=0.038 Score=49.17 Aligned_cols=86 Identities=17% Similarity=0.094 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
.-.+++.....-...++.+++..++..+-...|..++.-..-|.++...|+|.+|+.+++.+....|..+.+--.++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34556666666666777777777776666667777777777777777777777777777776666666666666667776
Q ss_pred HHhCcH
Q psy17306 87 KERGQL 92 (904)
Q Consensus 87 ~~~g~~ 92 (904)
..+|+.
T Consensus 89 ~~~~D~ 94 (160)
T PF09613_consen 89 YALGDP 94 (160)
T ss_pred HHcCCh
Confidence 666653
No 281
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.55 E-value=2.1 Score=48.89 Aligned_cols=243 Identities=20% Similarity=0.138 Sum_probs=124.7
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc---------cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC--
Q psy17306 41 NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL---------LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF-- 109 (904)
Q Consensus 41 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 109 (904)
+|......+.......++++|..+..++...-+. .+...-..|.+....|+++.|+...+.++..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3455556667777777888887777766553221 23445566777777788888888888887765543
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CChh--hHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHc
Q psy17306 110 ---IDGYINLAAALVAAGDMEQAVQAYVTALQYN----PDLY--CVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKAL 180 (904)
Q Consensus 110 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 180 (904)
..++..+|.+..-.|++++|..+...+.+.. .-.. .+....+.++..+|+...+...- ...+.
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~--~~~~~------ 565 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEK--AFNLI------ 565 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHH------
Confidence 3456777777777888888887777776652 2222 22334466666666322222211 00000
Q ss_pred CCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhc--CchhHH-HHHHHHHHHHHhCCHHHHHHHH
Q psy17306 181 GRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ--NPLLAE-AYSNLGNVYKERGQLQEALENY 257 (904)
Q Consensus 181 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~-~~~~lg~~~~~~g~~~~A~~~~ 257 (904)
......++............+...+........++...+.-.... .|.... ....++.+.+..|++++|...+
T Consensus 566 ----~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l 641 (894)
T COG2909 566 ----REQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQL 641 (894)
T ss_pred ----HHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 000000000000000011111111111000111111111111111 222222 3358999999999999999999
Q ss_pred HHHHhhCCCC-H----H--HHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 258 RHAVRLKPDF-I----D--GYINLAAALVAAGDMEQAVQAYVTAL 295 (904)
Q Consensus 258 ~~al~~~p~~-~----~--~~~~la~~~~~~g~~~~A~~~~~~al 295 (904)
......-.+. + . +..-.......+|+...|.....+..
T Consensus 642 ~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 642 DELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 8877653221 1 1 12222333446788888888777743
No 282
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.53 E-value=0.035 Score=45.64 Aligned_cols=103 Identities=19% Similarity=0.164 Sum_probs=61.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC
Q psy17306 14 LAHREYQAGDYESAERHCMQLWRQETNNT---GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 90 (904)
Q Consensus 14 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 90 (904)
+|..++..|++-+|+++.+..+...+++. ..+..-|.++.... ...+..+...-+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA------------~~ten~d~k~~yLl-------- 61 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA------------KKTENPDVKFRYLL-------- 61 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH------------HhccCchHHHHHHH--------
Confidence 57788899999999999999988877765 34444555544332 22211112222222
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy17306 91 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 139 (904)
Q Consensus 91 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 139 (904)
.|+++|.++..+.|..+..++.+|.-+-....|++++.-.++++.+
T Consensus 62 ---~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 ---GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ---HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3455666666666666666666666655555666666666666554
No 283
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.053 Score=57.96 Aligned_cols=129 Identities=23% Similarity=0.129 Sum_probs=100.7
Q ss_pred HHHhCCchHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHH
Q psy17306 577 AIKQNPLLAEAYSN--LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYL 654 (904)
Q Consensus 577 al~~~p~~~~~~~~--lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 654 (904)
.+..+|.++..+.. +...+...+....+.-....++..+|++..+..+||......|....+...+. .
T Consensus 57 ~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~----------~ 126 (620)
T COG3914 57 GIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS----------E 126 (620)
T ss_pred cCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH----------H
Confidence 45567777765433 47777888899899999999999999999999999999988887776666332 2
Q ss_pred HhhhcCcchHHHHHHH------HHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchh
Q psy17306 655 KAIETRPDFAVAWSNL------GCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFD 715 (904)
Q Consensus 655 ~~l~~~p~~~~a~~~l------g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 715 (904)
.+....|++......+ |.....+|+..++....+++..+.|.++.+...+.....++-.|.
T Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~ 193 (620)
T COG3914 127 IAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP 193 (620)
T ss_pred HHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch
Confidence 2445566666555555 899999999999999999999999999888887777766555543
No 284
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.42 E-value=1.3 Score=45.71 Aligned_cols=134 Identities=24% Similarity=0.195 Sum_probs=90.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh----cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----
Q psy17306 17 REYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQC----RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE---- 88 (904)
Q Consensus 17 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---- 88 (904)
.....+++..|...+..+-. -.++.....++.+|... .+..+|..+|..+. ...++.+.+.+|.+|..
T Consensus 50 ~~~~~~~~~~a~~~~~~a~~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 50 GSAYPPDYAKALKSYEKAAE--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccccHHHHHHHHHHhhh--cCChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCc
Confidence 33456678888888877754 22336777777777643 46778888888544 34567788888888876
Q ss_pred hCcHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy17306 89 RGQLQEALENYRHAVRLKPDF-IDGYINLAAALVAAG-------DMEQAVQAYVTALQYNPDLYCVRSDLGNLLKA 156 (904)
Q Consensus 89 ~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 156 (904)
..+..+|..+|.++....-.. ..+...+|.+|..-. +...|+..|.++-... ++.+...+|.+|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~ 199 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEK 199 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc
Confidence 458888999998888875433 344777777776541 2336777777776654 55666777766644
No 285
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.42 E-value=0.0043 Score=39.12 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC
Q psy17306 666 AWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696 (904)
Q Consensus 666 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 696 (904)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5677777777777777777777777777775
No 286
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.42 E-value=0.16 Score=52.89 Aligned_cols=119 Identities=9% Similarity=-0.008 Sum_probs=80.3
Q ss_pred hcccccccCCCCcchHHHHHHHHHHHhhCchh--HhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHH
Q psy17306 518 DSGKSWRTNPEHPNYVAAARATKYVYNVEPDL--TREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 595 (904)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~ 595 (904)
.+.+.++.+|.+.+.|-.+...-......+.. -....-.+..+.++ ++|++.+|++...+..+-.+.
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsil-----------erAL~~np~~~~L~l~~l~~~ 75 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSIL-----------ERALKHNPDSERLLLGYLEEG 75 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHH-----------HHHHHhCCCCHHHHHHHHHHH
Confidence 34566778888888884333322222221111 01111123333444 449999999999999888888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh
Q psy17306 596 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA---AGDMEQAVQAYVTALQ 647 (904)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~---~g~~~~A~~~~~~al~ 647 (904)
....+.++..+.+++++..+|+++..|...-..... .-.++.....|.+++.
T Consensus 76 ~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 76 EKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 888899999999999999999998888765554443 2357888888887776
No 287
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.38 E-value=0.25 Score=51.12 Aligned_cols=149 Identities=21% Similarity=0.133 Sum_probs=110.3
Q ss_pred cCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCc-HHHHHHHHH
Q psy17306 553 GGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE----RGQLQEALENYRHAVRLKPDF-IDGYINLAA 627 (904)
Q Consensus 553 ~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~ 627 (904)
..+..+|+.+|+. +. ....+.+.+.+|.+|.. ..+..+|...|+++.+..-.. ..+.+.+|.
T Consensus 90 ~~~~~~A~~~~~~-----------~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~ 156 (292)
T COG0790 90 SRDKTKAADWYRC-----------AA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGL 156 (292)
T ss_pred cccHHHHHHHHHH-----------Hh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 3457778888876 33 34567888999999987 448999999999999985443 345888898
Q ss_pred HHHHcC-----C--HHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCcC
Q psy17306 628 ALVAAG-----D--MEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNA----QGEIWLAIHHFEKAVSLDPN 696 (904)
Q Consensus 628 ~~~~~g-----~--~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~ 696 (904)
+|..-+ . ...|...|.++ .... ++.+.+.+|.+|.. ..++.+|..+|.+|.+...
T Consensus 157 ~~~~g~~~~~~~~~~~~A~~~~~~a-----------a~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~- 222 (292)
T COG0790 157 AYLSGLQALAVAYDDKKALYLYRKA-----------AELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD- 222 (292)
T ss_pred HHHcChhhhcccHHHHhHHHHHHHH-----------HHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-
Confidence 887752 2 22566644443 3322 67889999988865 3489999999999999976
Q ss_pred cHHHHHHHHHHHHHhc---------------chhHHHHHHHHhhcccCC
Q psy17306 697 FLDAYINLGNVLKEAR---------------IFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 697 ~~~a~~~la~~~~~~g---------------~~~~A~~~~~~a~~~~~~ 730 (904)
..+.+.++ ++...| +...|...+.++......
T Consensus 223 -~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 223 -GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred -HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 88999999 666665 777788888777766543
No 288
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.36 E-value=0.054 Score=52.08 Aligned_cols=94 Identities=24% Similarity=0.213 Sum_probs=72.1
Q ss_pred HcCCHHHHHHHHHHHHhh----C-CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCc------ch
Q psy17306 597 ERGQLQEALENYRHAVRL----K-PD--FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP------DF 663 (904)
Q Consensus 597 ~~g~~~~A~~~~~~al~~----~-p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p------~~ 663 (904)
....+++|++.|.-|+-. . +. -+..+..+|++|..+|+.+....++++|++ .|.++++... +.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~----~y~~a~~~e~~~~~~~~~ 164 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALE----FYEEAYENEDFPIEGMDE 164 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH----HHHHHHHhCcCCCCCchH
Confidence 345677888888777643 1 21 256788999999999998888888888888 6666665432 33
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD 694 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 694 (904)
....+.+|.++.+.|++++|+.+|.+++...
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 5678889999999999999999999998873
No 289
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.34 E-value=1.7 Score=45.49 Aligned_cols=129 Identities=12% Similarity=0.046 Sum_probs=109.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHH
Q psy17306 16 HREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 95 (904)
Q Consensus 16 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 95 (904)
...+..|+.-.|-.-...+++..|..|......+.+....|+|+.|...+..+-..-.....+...+-.....+|++++|
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 34578899999999999999999999999999999999999999999988776655444455666677778899999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChh
Q psy17306 96 LENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 96 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 144 (904)
.....-.+...-.+++.....+.....+|-++++...|++.+.++|...
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 9999988887777777776667777788999999999999999987643
No 290
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.34 E-value=1.6 Score=45.31 Aligned_cols=134 Identities=15% Similarity=0.018 Sum_probs=74.7
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHH
Q psy17306 596 KERGQLQEALENYRHAVRLKPDFIDGYINLAAA-LVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVF 674 (904)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~ 674 (904)
.+..-.+.|...|-++-+..-....++..-|.+ +...|++.-|-. .|.-.+...|+.+..-...-..+
T Consensus 408 ~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~-----------ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 408 LRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYN-----------IFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHH-----------HHHHHHHhCCCchHHHHHHHHHH
Confidence 333445666666666655442333344433333 445667777777 33333444555555555555556
Q ss_pred HhCCCHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHH
Q psy17306 675 NAQGEIWLAIHHFEKAVSLDPN--FLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILER 740 (904)
Q Consensus 675 ~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 740 (904)
...++-+.|...|++++..-.. -..+|..+-..-..-|+...+...=++..+..|...-+.....+
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sr 544 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSR 544 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHH
Confidence 6677777777777776655222 24455555555566677777666666666666655444444333
No 291
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.33 E-value=0.0068 Score=38.17 Aligned_cols=32 Identities=28% Similarity=0.487 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 587 AYSNLGNVYKERGQLQEALENYRHAVRLKPDF 618 (904)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (904)
+++.+|.++...|++++|+..|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57778888888888888888888888887763
No 292
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.28 E-value=0.091 Score=43.28 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=60.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHHcC----CHHHHHHHHHHHHhhChhhHHHhhhcCcch
Q psy17306 591 LGNVYKERGQLQEALENYRHAVRLKPDFID---GYINLAAALVAAG----DMEQAVQAYVTALQYNPSCYLKAIETRPDF 663 (904)
Q Consensus 591 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~lg~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~l~~~p~~ 663 (904)
++.-+...|++-+|++..+..+..++++.. .+..-|.++..+. +.+-=..++.-+++ ++.++..+.|..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve----~~s~a~~Lsp~~ 77 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVE----CFSRAVELSPDS 77 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHH----HHHHHhccChhH
Confidence 456778899999999999999999888764 4455566665432 22222223333333 555555555555
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
+..++.+|.-+....-|++++.-.+++|.+
T Consensus 78 A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 78 AHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 555555555544444555555555555554
No 293
>KOG3824|consensus
Probab=96.14 E-value=0.02 Score=55.44 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=55.8
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy17306 49 SSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 119 (904)
Q Consensus 49 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 119 (904)
+.-....|+.++|..+|+.++.++|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.++.
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 33455678888888888888888888888888888888888888888888888888888888877776654
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.12 E-value=0.01 Score=38.27 Aligned_cols=28 Identities=39% Similarity=0.828 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 587 AYSNLGNVYKERGQLQEALENYRHAVRL 614 (904)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (904)
+|.+||.+|...|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566777777777777777777775443
No 295
>KOG0530|consensus
Probab=96.11 E-value=0.25 Score=47.23 Aligned_cols=173 Identities=13% Similarity=0.125 Sum_probs=130.5
Q ss_pred HHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC-cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH-HH
Q psy17306 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG-QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME-QA 129 (904)
Q Consensus 52 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A 129 (904)
+.+...-..|+.+.+.++.++|.+-.+|..+-.++..++ +..+-+.++..+++-+|.+-.+|...-.+....|++. .-
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 344455678888899999999999999988888877664 6778889999999999999999999999999999988 88
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhh
Q psy17306 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNY 209 (904)
Q Consensus 130 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 209 (904)
++..+.++..+.++..+|...-.+....+.++.-+.+.
T Consensus 133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~------------------------------------------ 170 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYA------------------------------------------ 170 (318)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHH------------------------------------------
Confidence 89999999999999999988888888888887766655
Q ss_pred cCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHH------hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy17306 210 GGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE------RGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 280 (904)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (904)
...++.+-.+-.+|...-.+... .-..+.-+.+..+.+...|++..+|..|.-++..
T Consensus 171 --------------~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 171 --------------DELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred --------------HHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 23333333333333322111111 1123445677788899999999999998887775
No 296
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.06 E-value=0.089 Score=50.62 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=67.4
Q ss_pred cCCHHHHHHHHHHHHhhChhhHHHhhhcCc-chHHHHHHHHHHHHhCCCHHH-------HHHHHHHHHhcC--cC----c
Q psy17306 632 AGDMEQAVQAYVTALQYNPSCYLKAIETRP-DFAVAWSNLGCVFNAQGEIWL-------AIHHFEKAVSLD--PN----F 697 (904)
Q Consensus 632 ~g~~~~A~~~~~~al~~~~~~~~~~l~~~p-~~~~a~~~lg~~~~~~g~~~~-------A~~~~~~al~~~--p~----~ 697 (904)
...+++|++.|.-|+- ........| ..+..+..+||+|..+|+.+. |+..|+++++.. |. .
T Consensus 90 ~Rt~~~ai~~YkLAll-----~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~ 164 (214)
T PF09986_consen 90 ERTLEEAIESYKLALL-----CAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDE 164 (214)
T ss_pred CCCHHHHHHHHHHHHH-----HHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchH
Confidence 3467788887777763 222222222 447788999999999999554 555555555542 22 3
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHhhcccCC
Q psy17306 698 LDAYINLGNVLKEARIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 698 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 730 (904)
..+.+-+|.+..+.|++++|..+|.+++.....
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 678899999999999999999999999987643
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.02 E-value=0.11 Score=46.21 Aligned_cols=85 Identities=24% Similarity=0.182 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy17306 43 GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 122 (904)
Q Consensus 43 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 122 (904)
..+..+..+-...++.+.+..++.-+--+.|+.+..-..-|.++...|+|.+|+..|+.+....|..+.+--.++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 45566666677777888888888877777888888888888888888888888888888777777777777777888877
Q ss_pred cCCHH
Q psy17306 123 AGDME 127 (904)
Q Consensus 123 ~g~~~ 127 (904)
+|+.+
T Consensus 91 ~~D~~ 95 (160)
T PF09613_consen 91 LGDPS 95 (160)
T ss_pred cCChH
Confidence 77754
No 298
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.00 E-value=0.45 Score=49.40 Aligned_cols=131 Identities=15% Similarity=0.086 Sum_probs=91.9
Q ss_pred hhhhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHH--HHHHHHhc--------
Q psy17306 3 DIAQLGIGLLELAHREYQAGD-YESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAH--FSTLAIKQ-------- 71 (904)
Q Consensus 3 ~~~~~~~~l~~~a~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~-------- 71 (904)
|..++..-++.-|..+++.|. -++|+.+++.+++..|.+.+..... ..+-...|.+|+. .+.+.+.+
T Consensus 374 DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v--~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~g 451 (549)
T PF07079_consen 374 DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIV--FLFVKQAYKQALSMHAIPRLLKLEDFITEVG 451 (549)
T ss_pred cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 345677788899999999998 7889999999999988876543322 2222333444432 22222221
Q ss_pred -Cc---ccHHHHHHHH--HHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17306 72 -NP---LLAEAYSNLG--NVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 136 (904)
Q Consensus 72 -~p---~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 136 (904)
.| .+.+.-..++ ..++.+|+|.++.-+-.-..++.| ++.++..+|.|.....+|++|..++...
T Consensus 452 l~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 452 LTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 22 2333333443 456788999999998888888999 7899999999999999999999988754
No 299
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.98 E-value=0.041 Score=38.78 Aligned_cols=43 Identities=14% Similarity=-0.013 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy17306 665 VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNV 707 (904)
Q Consensus 665 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 707 (904)
+.++.+|..+.++|+|++|..+.+.+|+++|+|..+..-...+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 3567888888899999999999999999999888776554443
No 300
>KOG3824|consensus
Probab=95.95 E-value=0.045 Score=53.15 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=59.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHH
Q psy17306 670 LGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILE 739 (904)
Q Consensus 670 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~ 739 (904)
.+.-..+.|+.++|...|+.|+.++|.+++++..+|......++.-+|-.+|-+++.+.|.++....+.+
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 3444567899999999999999999999999999999999999999999999999999988766554443
No 301
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.95 E-value=1 Score=40.40 Aligned_cols=143 Identities=10% Similarity=-0.001 Sum_probs=103.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc----cHHHHHHHHH
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWRQETNN--TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL----LAEAYSNLGN 84 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~ 84 (904)
-|..|..+.+.+..++|+.-|..+-+..-.+ .-+.+..|.+....|+...|+..|..+-...|. ...+...-+.
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~ 140 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAY 140 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Confidence 4566777788899999999998876654443 346777888999999999999999988765432 1335566677
Q ss_pred HHHHhCcHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy17306 85 VYKERGQLQEALENYRHAVR-LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLL 154 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 154 (904)
++...|-|++-..-.+..-. .+|-...+.-.||..-++.|++.+|.+.|.+... +...+..-.+.+.+.
T Consensus 141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence 78888999887766655322 2455567888899999999999999999998876 444444444444443
No 302
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.94 E-value=0.051 Score=43.78 Aligned_cols=74 Identities=18% Similarity=0.075 Sum_probs=58.0
Q ss_pred hHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc--HHHHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 652 CYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF--LDAYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 652 ~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
.+++.+..+|++..+.+.+|..+...|++++|++.+-.++..+|+. ..+...+-.++...|.-+.-..-|++-+
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 6677888999999999999999999999999999999999998775 7778888888888887666666665544
No 303
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.85 E-value=0.13 Score=44.89 Aligned_cols=85 Identities=14% Similarity=0.053 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
...+++.........++++++..++..+--..|+.++.-..-|.++...|+|.+|+.+++...+..+..+.+.-.++.|+
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 34456666666666777777777777666667777777777777777777777777777777666666666666666666
Q ss_pred HHhCc
Q psy17306 87 KERGQ 91 (904)
Q Consensus 87 ~~~g~ 91 (904)
..+|+
T Consensus 89 ~al~D 93 (153)
T TIGR02561 89 NAKGD 93 (153)
T ss_pred HhcCC
Confidence 66665
No 304
>KOG2396|consensus
Probab=95.74 E-value=3.4 Score=43.85 Aligned_cols=91 Identities=8% Similarity=0.025 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCc-HHHHHHHHHHHHh
Q psy17306 26 SAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ-LQEALENYRHAVR 104 (904)
Q Consensus 26 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~ 104 (904)
.-..+|++++...+.++..|........+.+.+.+--..|.+++..+|+++..|..-|.-.+..+. .+.|...|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 345678888888888888888887777777778888899999999999999999888887777765 8888999999999
Q ss_pred cCCCCHHHHHHH
Q psy17306 105 LKPDFIDGYINL 116 (904)
Q Consensus 105 ~~p~~~~~~~~l 116 (904)
.+|+++..|...
T Consensus 169 ~npdsp~Lw~ey 180 (568)
T KOG2396|consen 169 FNPDSPKLWKEY 180 (568)
T ss_pred cCCCChHHHHHH
Confidence 999988776543
No 305
>KOG1258|consensus
Probab=95.67 E-value=4.2 Score=44.38 Aligned_cols=273 Identities=10% Similarity=0.010 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHH-HHHhCcHHHHHHHHHHHH
Q psy17306 25 ESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNV-YKERGQLQEALENYRHAV 103 (904)
Q Consensus 25 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al 103 (904)
+.+...|...|...|.....|...|..-.+.|..+.+.++|++.+.--|.....|...-.. -...|+.+.-...|++|.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 5556677777888898888888899999999999999999999998888777776654443 335577778888888888
Q ss_pred hcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH------cCChHHHHHHHHHHHhhH
Q psy17306 104 RLKPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKA------LGRLDEAKDLYCVRSDLG 174 (904)
Q Consensus 104 ~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------~~~~~~A~~~~~~~~~l~ 174 (904)
.....+ ...|-..-..-..++++..-...|++.+++--....-++..-.=+.. .-..++....-.....-
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~- 220 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAER- 220 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhh-
Confidence 765443 23444444445667788888888888877522221111111000000 11111111111000000
Q ss_pred HHHHHcCCHHHHHHHHhhcCC-Ccchhh--H------HHHHHhhcCCCcchHHHhhHHHHHh--------hcCchhHHHH
Q psy17306 175 NLLKALGRLDEAKNLHTENIK-PVTMKV--Q------NAIVCNYGGRKPTTLESAHFSTLAI--------KQNPLLAEAY 237 (904)
Q Consensus 175 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~--~------~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~ 237 (904)
......+...+-....-..+. +..... . ....................++..+ ..++.....|
T Consensus 221 ~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw 300 (577)
T KOG1258|consen 221 SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNW 300 (577)
T ss_pred hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHH
Confidence 000000011111111111000 000000 0 0000000011111111111112221 2334455677
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 238 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 298 (904)
Q Consensus 238 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 298 (904)
..........|+++.....|++++--.......|...+......|+.+-|-..+..+.+..
T Consensus 301 ~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~ 361 (577)
T KOG1258|consen 301 RYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH 361 (577)
T ss_pred HHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc
Confidence 7777778888999999999999988877888889988888888888777776666666544
No 306
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.67 E-value=0.39 Score=39.74 Aligned_cols=100 Identities=19% Similarity=0.204 Sum_probs=57.4
Q ss_pred hhhHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q psy17306 5 AQLGIGLLE--LAHREYQAGDYESAERHCMQLWRQETN------------NTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70 (904)
Q Consensus 5 ~~~~~~l~~--~a~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 70 (904)
...+.+++. .|...+..|-|++|...+.+++..... ++-.+..|+..+...|+|++++...++++.
T Consensus 4 keVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 4 KEVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR 83 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 345566554 455667889999999999998765322 233555666667777777766665555543
Q ss_pred -------cCcccH----HHHHHHHHHHHHhCcHHHHHHHHHHHHh
Q psy17306 71 -------QNPLLA----EAYSNLGNVYKERGQLQEALENYRHAVR 104 (904)
Q Consensus 71 -------~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 104 (904)
++.+.. .+.+..|..+..+|+.++|+..|+.+-+
T Consensus 84 YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 84 YFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 222222 2334555555556666666666655543
No 307
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.64 E-value=3 Score=42.50 Aligned_cols=53 Identities=26% Similarity=0.308 Sum_probs=36.9
Q ss_pred HHhCcHHHHHHHHHHHHhcC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc
Q psy17306 87 KERGQLQEALENYRHAVRLK----PDF----IDGYINLAAALVAAG-DMEQAVQAYVTALQY 139 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 139 (904)
..+|+++.|..++.++-... |+. ...+++.|......+ ++++|+.+++++.++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45677777777777775543 222 235667777777777 888888888888776
No 308
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.59 E-value=0.34 Score=51.08 Aligned_cols=165 Identities=18% Similarity=0.079 Sum_probs=111.6
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHH-----HH--HHHHHHcCChHHHHHHHHHHHhhHH
Q psy17306 103 VRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRS-----DL--GNLLKALGRLDEAKDLYCVRSDLGN 175 (904)
Q Consensus 103 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-----~l--a~~~~~~~~~~~A~~~~~~~~~l~~ 175 (904)
+..+|-..+++..++.++..+|+...|.+.+++|+-.......... .. |.+...- ...+-...|........
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~-~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDY-RRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCC-ccccchHHHHHHHHHHH
Confidence 4568999999999999999999999999999998743211111111 11 1111111 12233445556666677
Q ss_pred HHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCch-hHHHHH-HHHHHHHHhCCHHHH
Q psy17306 176 LLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL-LAEAYS-NLGNVYKERGQLQEA 253 (904)
Q Consensus 176 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~-~lg~~~~~~g~~~~A 253 (904)
...+.|-+..|+++.+ -.+..+|. ++.... .+-....+.++|+--
T Consensus 112 ~L~~RG~~rTAlE~~K---------------------------------lLlsLdp~~DP~g~ll~ID~~ALrs~~y~~L 158 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCK---------------------------------LLLSLDPDEDPLGVLLFIDYYALRSRQYQWL 158 (360)
T ss_pred HHHhcCcHHHHHHHHH---------------------------------HHHhcCCCCCcchhHHHHHHHHHhcCCHHHH
Confidence 7778888888888775 67788887 665444 444445677888877
Q ss_pred HHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhhCCCc
Q psy17306 254 LENYRHAVRLKP-----DFIDGYINLAAALVAAGDM---------------EQAVQAYVTALQYNPLL 301 (904)
Q Consensus 254 ~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~~ 301 (904)
+..++....... ..|..-+..+.++...++. +.|...+.+|+...|..
T Consensus 159 i~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 159 IDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred HHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 777776555211 1345677888888888888 89999999999999976
No 309
>KOG3783|consensus
Probab=95.58 E-value=4.2 Score=43.79 Aligned_cols=241 Identities=11% Similarity=-0.006 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17306 59 DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF----IDGYINLAAALVAAGDMEQAVQAYV 134 (904)
Q Consensus 59 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~ 134 (904)
+...+.+.......|+++......+..+...|+.+.|+..++..+. +.. .-.++.+|.++..+.+|..|-..+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3444555555567889899999999999999998888999988877 332 2356788999999999999999999
Q ss_pred HHHhcCCChhhHHHHHH-HHHH--------HcCChHHHHHHHHHHHhhHHH-----HHHcCCHHHHHHHHhhcC-CCc--
Q psy17306 135 TALQYNPDLYCVRSDLG-NLLK--------ALGRLDEAKDLYCVRSDLGNL-----LKALGRLDEAKNLHTENI-KPV-- 197 (904)
Q Consensus 135 ~al~~~p~~~~~~~~la-~~~~--------~~~~~~~A~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~-~~~-- 197 (904)
.....+.-+.-.+..++ -++. ..|+-+.|...++....+-.. -....-..+|.+.-...- .+.
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~ 407 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASIL 407 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccccccccc
Confidence 98877655544555554 2221 123444443333211111100 000111122222222210 000
Q ss_pred chhhHHHHHHhhcCCCcchHHHhhHHHHH---hhc-Cchh-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC------C-
Q psy17306 198 TMKVQNAIVCNYGGRKPTTLESAHFSTLA---IKQ-NPLL-AEAYSNLGNVYKERGQLQEALENYRHAVRLK------P- 265 (904)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~-~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p- 265 (904)
...+..-+...+.+-..-........... -.. ++++ .-.+..+|.++..+|+...|..+|...++.. +
T Consensus 408 la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w 487 (546)
T KOG3783|consen 408 LASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLW 487 (546)
T ss_pred ccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccc
Confidence 01111222222322221111111111111 111 3333 3345678999999999999999999888431 1
Q ss_pred CCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCc
Q psy17306 266 DFIDGYINLAAALVAAGD-MEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 266 ~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~ 301 (904)
-.|.+++.+|..+..+|. ..++..++.+|-....+.
T Consensus 488 ~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 488 AVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred cccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 126799999999999999 999999999998877554
No 310
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.55 E-value=1.2 Score=47.10 Aligned_cols=127 Identities=17% Similarity=0.075 Sum_probs=87.0
Q ss_pred HHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc--------------C------------ccc---HHHHHHHHH
Q psy17306 34 LWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ--------------N------------PLL---AEAYSNLGN 84 (904)
Q Consensus 34 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~------------p~~---~~~~~~la~ 84 (904)
.++.+|-+.+++..++.++..+|+...|.+++++++-. + +.| -.+++....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 45678999999999999999999999999999888642 1 111 235566677
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCC-CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----hhhHHHHHHHHHHHc
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPD-FIDG-YINLAAALVAAGDMEQAVQAYVTALQYNPD-----LYCVRSDLGNLLKAL 157 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~ 157 (904)
.+.+.|-+..|+++.+-.+.++|. ++-. ++.+-....+.++++--+..++........ -+...+..+.++...
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l 191 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRL 191 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHh
Confidence 778888889999998888888888 6544 444444455677777777777665442111 123444555555555
Q ss_pred CCh
Q psy17306 158 GRL 160 (904)
Q Consensus 158 ~~~ 160 (904)
++.
T Consensus 192 ~~~ 194 (360)
T PF04910_consen 192 EKE 194 (360)
T ss_pred cCc
Confidence 554
No 311
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.51 E-value=0.019 Score=35.72 Aligned_cols=32 Identities=41% Similarity=0.533 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC
Q psy17306 665 VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696 (904)
Q Consensus 665 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 696 (904)
.+++.+|.++...|++++|+..|+++++++|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35677788888888888888888888777764
No 312
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.48 E-value=0.17 Score=40.87 Aligned_cols=43 Identities=26% Similarity=0.263 Sum_probs=17.8
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCC
Q psy17306 65 STLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 107 (904)
Q Consensus 65 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 107 (904)
+++.++.+|++..+.+.+|..+...|++++|++.+-.++..++
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 3344444444444444444444444444444444444444443
No 313
>KOG0890|consensus
Probab=95.40 E-value=12 Score=47.94 Aligned_cols=129 Identities=12% Similarity=0.089 Sum_probs=83.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17306 13 ELAHREYQAGDYESAERHCMQLWRQETN----NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE 88 (904)
Q Consensus 13 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 88 (904)
.+|.+-++.|.|..|+-++++- ...+. ....++.+-.+|...+++|.-.-..... ..+|+ ....-.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r-~a~~s----l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARR-FADPS----LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHh-hcCcc----HHHHHHHHHh
Confidence 5677778889999999998885 22221 1233444445788888887766655531 12232 2333445566
Q ss_pred hCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHH
Q psy17306 89 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVR 147 (904)
Q Consensus 89 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 147 (904)
.|++..|..+|++++..+|+....+.+.-......|.+...+...+-.....++...-+
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~ 1520 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDEL 1520 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHH
Confidence 78888888888888888888777777776777777777777776665554444443333
No 314
>PRK10941 hypothetical protein; Provisional
Probab=95.27 E-value=0.13 Score=51.15 Aligned_cols=78 Identities=13% Similarity=0.013 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHH
Q psy17306 665 VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCE 742 (904)
Q Consensus 665 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 742 (904)
..+.++-.+|...++++.|+.+.+..+.++|+++.-+...|.+|.++|.+..|..-++.-++..|++++...+.....
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 456788889999999999999999999999999999999999999999999999999999999999888777654443
No 315
>KOG2041|consensus
Probab=95.18 E-value=6.4 Score=43.47 Aligned_cols=136 Identities=15% Similarity=0.152 Sum_probs=71.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHh
Q psy17306 12 LELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ--NPLLAEAYSNLGNVYKER 89 (904)
Q Consensus 12 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~ 89 (904)
.++|.+-..-|+|++|.+.|-.+-+. + ....++...|+|-...++++..-.- +..-..++..+|..+..+
T Consensus 738 ~q~aei~~~~g~feeaek~yld~drr---D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~ 809 (1189)
T KOG2041|consen 738 QQRAEISAFYGEFEEAEKLYLDADRR---D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEM 809 (1189)
T ss_pred HHhHhHhhhhcchhHhhhhhhccchh---h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHH
Confidence 34455555567777777766544211 1 1123445556665555555432111 112345788888888888
Q ss_pred CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 90 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 90 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
..|++|.++|.+.-. .-++..|++...++++-... ...-|++...+-.+|..+...|.-++|.+.+
T Consensus 810 ~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~l----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 810 MEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEVL----ARTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHHH----HHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 888888888876422 12334445554444432222 2223445555555555555555555555544
No 316
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.99 E-value=0.12 Score=36.47 Aligned_cols=47 Identities=13% Similarity=0.019 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHH
Q psy17306 699 DAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKT 745 (904)
Q Consensus 699 ~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 745 (904)
+.++.+|..+.++|+|++|..+.+..+...|++.........+..++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998888877777655
No 317
>PRK10941 hypothetical protein; Provisional
Probab=94.98 E-value=0.21 Score=49.75 Aligned_cols=77 Identities=16% Similarity=0.108 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH
Q psy17306 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699 (904)
Q Consensus 620 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 699 (904)
..+.++-.+|.+.++++.|+. +.+..+...|+++.-+...|.+|.++|.+..|...++..++..|+++.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~-----------~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALR-----------ASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 356788889999999999999 888888899999999999999999999999999999999999999988
Q ss_pred HHHHHHHH
Q psy17306 700 AYINLGNV 707 (904)
Q Consensus 700 a~~~la~~ 707 (904)
+-.-...+
T Consensus 251 a~~ik~ql 258 (269)
T PRK10941 251 SEMIRAQI 258 (269)
T ss_pred HHHHHHHH
Confidence 76544443
No 318
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.87 E-value=0.042 Score=34.03 Aligned_cols=32 Identities=50% Similarity=0.785 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17306 586 EAYSNLGNVYKERGQLQEALENYRHAVRLKPD 617 (904)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 617 (904)
.+++.+|.++...|+++.|+..|+++++++|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35677777787778888888888877777664
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.85 E-value=0.054 Score=36.27 Aligned_cols=30 Identities=33% Similarity=0.423 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
+.++.++|.+|..+|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356788888888888888888888888876
No 320
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.79 E-value=0.38 Score=42.11 Aligned_cols=84 Identities=21% Similarity=0.089 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy17306 44 VLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 123 (904)
Q Consensus 44 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 123 (904)
.+..........++.+++..++..+--+.|+.+..-..-|.++...|+|.+|+..|+...+..+..+.+.-.++.|+..+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 34444445555777777777777776777777777777777777777777777777777776666666666677777777
Q ss_pred CCHH
Q psy17306 124 GDME 127 (904)
Q Consensus 124 g~~~ 127 (904)
||.+
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 7653
No 321
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=4.6 Score=39.46 Aligned_cols=156 Identities=13% Similarity=0.102 Sum_probs=94.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc-----CcccHHH
Q psy17306 12 LELAHREYQAGDYESAERHCMQLWRQETN--------NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ-----NPLLAEA 78 (904)
Q Consensus 12 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~ 78 (904)
+.+|+.....+++++|+..|.+++..... ...+...++.+|...|++..--+.....-+. .|.....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 78899999999999999999999876322 3457788999999999887554443332221 1222222
Q ss_pred HHHHHH-HHHHhCcHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCChhh
Q psy17306 79 YSNLGN-VYKERGQLQEALENYRHAVRLKPDFI------DGYINLAAALVAAGDMEQAVQAYVTALQY------NPDLYC 145 (904)
Q Consensus 79 ~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 145 (904)
...+-. .-.....++.-+......++...... ..-..++..+++.|.|.+|+......+.- .|+-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 222211 11223445555555555554422211 12345667788888888888877666532 233345
Q ss_pred HHHHHHHHHHHcCChHHHHHHH
Q psy17306 146 VRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 146 ~~~~la~~~~~~~~~~~A~~~~ 167 (904)
.+..-..+|....+..++...+
T Consensus 167 vhllESKvyh~irnv~KskaSL 188 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASL 188 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHH
Confidence 6666667777777666666555
No 322
>KOG1839|consensus
Probab=94.72 E-value=0.29 Score=57.90 Aligned_cols=175 Identities=19% Similarity=0.154 Sum_probs=129.1
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHH-HHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFST-LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-------- 614 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~-~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 614 (904)
...|......|.+.+|.+ ..+ +..++. .....+|..+..+..++.++...|++++|+..-.++.-+
T Consensus 936 ~e~gq~~~~e~~~~~~~~-~~~----slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYE-LPE----SLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhcccchhhhhh-hhh----hhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 344445555666666665 333 222222 244568999999999999999999999999998888765
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q psy17306 615 KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD 694 (904)
Q Consensus 615 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 694 (904)
.|+....+.+++...+..++...|...+.+++....=.+ .+.+|.-+....+++.++...++++.|+.+.+.|++..
T Consensus 1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~---ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSS---GEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcccc---CCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 366677899999999999999999998888876532112 23678888888999999999999999999999999973
Q ss_pred c--------CcHHHHHHHHHHHHHhcchhHHHHHHHHhhc
Q psy17306 695 P--------NFLDAYINLGNVLKEARIFDRANTLFYVSSY 726 (904)
Q Consensus 695 p--------~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 726 (904)
- .....+..+++++...|++..|+...+....
T Consensus 1088 ~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1088 KKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred hhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 2 2345666777777777777777666655543
No 323
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.66 E-value=0.57 Score=48.06 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=33.8
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17306 80 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135 (904)
Q Consensus 80 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 135 (904)
-.+..||+.+++.+-|+....+.+.++|..+.-+...|.|+..+.+|.+|-+.+--
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSami 287 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMI 287 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666554433
No 324
>KOG1464|consensus
Probab=94.65 E-value=0.8 Score=43.99 Aligned_cols=131 Identities=15% Similarity=0.105 Sum_probs=73.4
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHH-HHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH--
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFS-TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID-- 620 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~-~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 620 (904)
..+|.+++..+.|.+-..++.+.-.....-- +.-........+.|..--..|-.+.+-.+-...|++++.+....|.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 4577888888887776666655111000000 0000011112334555556777778878888899999988543322
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCC
Q psy17306 621 ----GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG 678 (904)
Q Consensus 621 ----a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g 678 (904)
+.-.=|..+.+.|++++|-..|=+|.+ .|..+-...-....-|.-||+.+.+.|
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFK----NYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFK----NYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHh----cccccCCcchhHHHHHHHHHHHHHHcC
Confidence 333446778888999999986666665 333322222222334566677776655
No 325
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=1.1 Score=48.29 Aligned_cols=139 Identities=19% Similarity=0.073 Sum_probs=106.5
Q ss_pred HcCCHHH-HHHHHHHHHhhCCCCHHHHHHH--HHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHH
Q psy17306 20 QAGDYES-AERHCMQLWRQETNNTGVLLLL--SSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAL 96 (904)
Q Consensus 20 ~~g~~~~-A~~~~~~~l~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 96 (904)
..+.... ++..+...+..+|.++..+... ...+...++...+...+...+..+|.++.+..++|......|....+.
T Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~ 121 (620)
T COG3914 42 NAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLAL 121 (620)
T ss_pred cccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHH
Confidence 3344333 6666666667788888775444 667778888889999999999999999999999999988888777777
Q ss_pred HHHHH-HHhcCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcC
Q psy17306 97 ENYRH-AVRLKPDFIDGYINL------AAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALG 158 (904)
Q Consensus 97 ~~~~~-al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 158 (904)
..+.. +....|++......+ +.....+|+..++....+++....|.++.....+.......-
T Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~c 190 (620)
T COG3914 122 ADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQC 190 (620)
T ss_pred HHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhc
Confidence 66665 788888887665554 888888899999999999999999998766655555543333
No 326
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.53 E-value=3.4 Score=37.17 Aligned_cols=142 Identities=16% Similarity=0.134 Sum_probs=93.5
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHH-----HHHHHH
Q psy17306 81 NLGNVYKERGQLQEALENYRHAVRLKPDF--IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVR-----SDLGNL 153 (904)
Q Consensus 81 ~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----~~la~~ 153 (904)
.-+.-+.+.+..++|+..|...-+..-.. .-+....|.+..+.|+...|+..|..+-...| .|.+. ..-+.+
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~l 141 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHH
Confidence 33444566788888888888876654332 34677788888899999999999988765543 23333 333334
Q ss_pred HHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchh
Q psy17306 154 LKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLL 233 (904)
Q Consensus 154 ~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 233 (904)
+...|.|++. ....+. -....+|..
T Consensus 142 LvD~gsy~dV-----------------------~srvep--------------------------------La~d~n~mR 166 (221)
T COG4649 142 LVDNGSYDDV-----------------------SSRVEP--------------------------------LAGDGNPMR 166 (221)
T ss_pred HhccccHHHH-----------------------HHHhhh--------------------------------ccCCCChhH
Confidence 4444444443 333321 233556667
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy17306 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 279 (904)
Q Consensus 234 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (904)
..+.-.||..-++.|++..|.+.|.+... +...+....+.+.+..
T Consensus 167 ~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 167 HSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred HHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 77888899999999999999999999776 5455555555555443
No 327
>KOG1310|consensus
Probab=94.34 E-value=0.21 Score=52.49 Aligned_cols=98 Identities=18% Similarity=0.078 Sum_probs=64.5
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh---CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy17306 46 LLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKER---GQLQEALENYRHAVRLKPDFIDGYINLAAALVA 122 (904)
Q Consensus 46 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 122 (904)
..-|.-.+..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.....+++++|....+++.++.++..
T Consensus 378 ~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e 457 (758)
T KOG1310|consen 378 KTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE 457 (758)
T ss_pred HhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH
Confidence 33333344445556667777777777777666666666666654 345566666667777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCh
Q psy17306 123 AGDMEQAVQAYVTALQYNPDL 143 (904)
Q Consensus 123 ~g~~~~A~~~~~~al~~~p~~ 143 (904)
++++.+|+.+...+....|.+
T Consensus 458 l~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 458 LTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HhhHHHhhhhHHHHhhcCchh
Confidence 777777777777666666644
No 328
>KOG2041|consensus
Probab=94.32 E-value=11 Score=41.91 Aligned_cols=137 Identities=19% Similarity=0.170 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHH----------HHHHHHHHHcCChHHHHHHHH---HHHhhHHH
Q psy17306 110 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVR----------SDLGNLLKALGRLDEAKDLYC---VRSDLGNL 176 (904)
Q Consensus 110 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~~~~~~A~~~~~---~~~~l~~~ 176 (904)
+..|..+|......-.++-|...|-+.-.. |.- ..- ...+.+-.--|.+++|...|- ..-....+
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gi-k~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLAiel 769 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGI-KLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLAIEL 769 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cch-hHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhhHHH
Confidence 667777777766666666666665554211 111 111 122333334466666666651 11112234
Q ss_pred HHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHH
Q psy17306 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALEN 256 (904)
Q Consensus 177 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 256 (904)
+.+.|++-...++++..-.. ..+.....++..+|..+.....|++|.++
T Consensus 770 r~klgDwfrV~qL~r~g~~d-------------------------------~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 770 RKKLGDWFRVYQLIRNGGSD-------------------------------DDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred HHhhhhHHHHHHHHHccCCC-------------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554421110 11222356778888888888888888888
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy17306 257 YRHAVRLKPDFIDGYINLAAALVAAGDMEQA 287 (904)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (904)
|.+.-. .-++..+++...++++-
T Consensus 819 Y~~~~~--------~e~~~ecly~le~f~~L 841 (1189)
T KOG2041|consen 819 YSYCGD--------TENQIECLYRLELFGEL 841 (1189)
T ss_pred HHhccc--------hHhHHHHHHHHHhhhhH
Confidence 876422 23455666666666553
No 329
>KOG3364|consensus
Probab=94.09 E-value=1.4 Score=37.70 Aligned_cols=73 Identities=19% Similarity=0.162 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhChhhHHHhhh-cCcc-hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 619 IDGYINLAAALVAAGDME---QAVQAYVTALQYNPSCYLKAIE-TRPD-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 619 ~~a~~~lg~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~l~-~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
....+++++++....+.+ +.+. ++...++ -+|+ ..+..+.|+..+.+.|+|++|+.+.+..++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~-----------iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIV-----------ILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHH-----------HHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 456677777777665433 3444 3333332 2222 3456667777777777777777777777777
Q ss_pred CcCcHHHHH
Q psy17306 694 DPNFLDAYI 702 (904)
Q Consensus 694 ~p~~~~a~~ 702 (904)
.|+|..+..
T Consensus 101 e~~n~Qa~~ 109 (149)
T KOG3364|consen 101 EPNNRQALE 109 (149)
T ss_pred CCCcHHHHH
Confidence 777766653
No 330
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.06 E-value=0.085 Score=49.19 Aligned_cols=60 Identities=28% Similarity=0.522 Sum_probs=46.2
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChh
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 144 (904)
.....++.+.|.+.|.+++.+-|.+...|+.+|....+.|+.+.|...|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345567777788888888888888888888888888888888888888888888877663
No 331
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.05 E-value=0.83 Score=42.63 Aligned_cols=99 Identities=14% Similarity=-0.001 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCC--CCHH----H
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQLQEALENYRHAVRLKP--DFID----G 112 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~----~ 112 (904)
-.++..+|..|.+.|+.+.|++.|.++...... ....++.+..+....+++.....+..++-..-. .+.. .
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 356777888888888888888888887665332 245667777777778888888888777765522 2221 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy17306 113 YINLAAALVAAGDMEQAVQAYVTALQYN 140 (904)
Q Consensus 113 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 140 (904)
...-|..++..++|..|-+.|-.+....
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 3445666777888888888887665443
No 332
>KOG3364|consensus
Probab=94.03 E-value=0.73 Score=39.39 Aligned_cols=82 Identities=11% Similarity=0.005 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhCCC---HHHHHHHHHHHHh-cCcC-cHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHH
Q psy17306 664 AVAWSNLGCVFNAQGE---IWLAIHHFEKAVS-LDPN-FLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVIL 738 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~---~~~A~~~~~~al~-~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 738 (904)
....+++++++....+ ..+.+..++..++ -+|. .-+..+.|+..+.+.|+|++++.+.+..++..|++..+...-
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 4678999999988765 5679999999997 5555 367889999999999999999999999999999988887776
Q ss_pred HHHHHHH
Q psy17306 739 ERCEAKT 745 (904)
Q Consensus 739 ~~~~~~~ 745 (904)
..++.++
T Consensus 112 ~~ied~i 118 (149)
T KOG3364|consen 112 ETIEDKI 118 (149)
T ss_pred HHHHHHH
Confidence 6666544
No 333
>KOG1310|consensus
Probab=93.93 E-value=0.21 Score=52.61 Aligned_cols=106 Identities=12% Similarity=-0.025 Sum_probs=75.8
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh---cCHHHHHHHHHHHHhcCcccHHHHH
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQC---RKLDKSAHFSTLAIKQNPLLAEAYS 80 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~ 80 (904)
++...+-.+..|.-.+..+....|+..|.+++...|.....+...+.++++. |+.-.|+.-...+++++|....+++
T Consensus 370 L~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~ 449 (758)
T KOG1310|consen 370 LPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHF 449 (758)
T ss_pred chHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHH
Confidence 3445555566666666666777777788777777777777777777776654 4566677777777777777777888
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHhcCCCC
Q psy17306 81 NLGNVYKERGQLQEALENYRHAVRLKPDF 109 (904)
Q Consensus 81 ~la~~~~~~g~~~~A~~~~~~al~~~p~~ 109 (904)
.|+.++..++++.+|+.+...+....|.+
T Consensus 450 ~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 450 RLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 88888888888888887777766666644
No 334
>KOG1839|consensus
Probab=93.88 E-value=0.95 Score=53.80 Aligned_cols=161 Identities=16% Similarity=0.119 Sum_probs=123.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHH------HHHHHH-hhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc--------
Q psy17306 7 LGIGLLELAHREYQAGDYESAER------HCMQLW-RQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ-------- 71 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~------~~~~~l-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 71 (904)
.+.-.++.|......|.+.+|.+ .+.+.. ...|..+..+..++.++...|++++|+..-.++.-.
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 45556778888888888888877 555332 357788899999999999999999999988887643
Q ss_pred CcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Q psy17306 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL--------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD- 142 (904)
Q Consensus 72 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 142 (904)
.|+....+..++...+..++...|+..+.++..+ .|.-.....+++.++...++++.|+.+.+.|+..+-.
T Consensus 1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v 1090 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV 1090 (1236)
T ss_pred CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 4567788899999999999999999999998876 3555566788899999999999999999999885322
Q ss_pred -------hhhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 143 -------LYCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 143 -------~~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
....+..++++....+++..|....
T Consensus 1091 ~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1091 LGPKELETALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred cCccchhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 2334555566666666665555544
No 335
>KOG4814|consensus
Probab=93.86 E-value=0.51 Score=51.07 Aligned_cols=91 Identities=20% Similarity=0.170 Sum_probs=42.8
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy17306 47 LLSSIHFQCRKLDKSAHFSTLAIKQNPL------LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 120 (904)
Q Consensus 47 ~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 120 (904)
+-|.-.++..+|..+++.|...+..-|. .+.....++.||..+.+.+.|.++++.|-+.+|.++-.....-.+.
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF 438 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 3344444444555555555544443222 1223344445555555555555555555555555544444444444
Q ss_pred HHcCCHHHHHHHHHHHH
Q psy17306 121 VAAGDMEQAVQAYVTAL 137 (904)
Q Consensus 121 ~~~g~~~~A~~~~~~al 137 (904)
..-|.-++|+.+..+..
T Consensus 439 ~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 439 LAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHhcchHHHHHHHHHHH
Confidence 44455555555444443
No 336
>KOG2396|consensus
Probab=93.79 E-value=11 Score=40.26 Aligned_cols=94 Identities=14% Similarity=0.105 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Q psy17306 60 KSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD-MEQAVQAYVTALQ 138 (904)
Q Consensus 60 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~ 138 (904)
.-...|+.++...+.+...|........+.+.+.+--..|.+++..+|++++.|+..|.-.+..+. .+.|...+.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 345788899998898999999999888888889999999999999999999999999988887776 9999999999999
Q ss_pred cCCChhhHHHHHHHH
Q psy17306 139 YNPDLYCVRSDLGNL 153 (904)
Q Consensus 139 ~~p~~~~~~~~la~~ 153 (904)
.+|+++..|...-++
T Consensus 169 ~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFRM 183 (568)
T ss_pred cCCCChHHHHHHHHH
Confidence 999999887655444
No 337
>KOG1463|consensus
Probab=93.62 E-value=9 Score=38.65 Aligned_cols=265 Identities=15% Similarity=0.058 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCC--------HHHHHHHHHHHHhhcCHHHHHHHHHHHHh---cCcc--
Q psy17306 10 GLLELAHREYQAGDYESAERHCMQLWRQ--ETNN--------TGVLLLLSSIHFQCRKLDKSAHFSTLAIK---QNPL-- 74 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~-- 74 (904)
..+..+.......+.++++.++..++.. .|.+ ......+|.++...|+.++-.......-. .-+.
T Consensus 6 ~~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kak 85 (411)
T KOG1463|consen 6 SLLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAK 85 (411)
T ss_pred HHHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHH
Confidence 3477888888889999999999999873 2322 34677899999999998876555543322 1111
Q ss_pred cHHHHHHHHH-HHHHhCcHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CC--
Q psy17306 75 LAEAYSNLGN-VYKERGQLQEALENYRHAVRLKPDFI------DGYINLAAALVAAGDMEQAVQAYVTALQY----NP-- 141 (904)
Q Consensus 75 ~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p-- 141 (904)
.+.....+-. +....+..+.-+..+..+++.....- ..-..+...|...++|.+|+......+.- +.
T Consensus 86 aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~ 165 (411)
T KOG1463|consen 86 AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI 165 (411)
T ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 1111111111 12222334445555555554322211 12345677888888888888877766542 22
Q ss_pred ChhhHHHHHHHHHHHcCChHHHHHHHHHHHh------------------hHHHHHHcCCHHHHHHHHhhcCCCcchhhHH
Q psy17306 142 DLYCVRSDLGNLLKALGRLDEAKDLYCVRSD------------------LGNLLKALGRLDEAKNLHTENIKPVTMKVQN 203 (904)
Q Consensus 142 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 203 (904)
.-.+++..-..+|....+..+|...+..... -|..+....+|..|..+|-++...+.
T Consensus 166 lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~----- 240 (411)
T KOG1463|consen 166 LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFD----- 240 (411)
T ss_pred ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcccc-----
Confidence 1245556666777777777777766622111 13334444555555555544332211
Q ss_pred HHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHH--HHHHHhhCCCCHHHHHHHHHHHHHc
Q psy17306 204 AIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALEN--YRHAVRLKPDFIDGYINLAAALVAA 281 (904)
Q Consensus 204 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~--~~~al~~~p~~~~~~~~la~~~~~~ 281 (904)
.+..++.-..++..+-.+-...+..++--.. -..+++......++....+.++.+.
T Consensus 241 ----------------------s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nR 298 (411)
T KOG1463|consen 241 ----------------------SLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNR 298 (411)
T ss_pred ----------------------ccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCC
Confidence 1111222233333444444455555554333 3445566666677888888777643
Q ss_pred --CCHHHHHHHHHHHHhhCCCc
Q psy17306 282 --GDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 282 --g~~~~A~~~~~~al~~~p~~ 301 (904)
.+|+.|+..|..-+..+|-.
T Consensus 299 SLkdF~~AL~~yk~eL~~D~iv 320 (411)
T KOG1463|consen 299 SLKDFEKALADYKKELAEDPIV 320 (411)
T ss_pred cHHHHHHHHHHhHHHHhcChHH
Confidence 47788888887777766643
No 338
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.56 E-value=0.16 Score=33.94 Aligned_cols=29 Identities=38% Similarity=0.647 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 586 EAYSNLGNVYKERGQLQEALENYRHAVRL 614 (904)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (904)
.++.++|.+|...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45666777777777777777777776654
No 339
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.53 E-value=0.12 Score=48.36 Aligned_cols=57 Identities=19% Similarity=0.350 Sum_probs=31.1
Q ss_pred HhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC
Q psy17306 53 FQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 109 (904)
Q Consensus 53 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 109 (904)
...++.+.|.+.+.+++.+.|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344555555555555555555555555555555555555555555555555555543
No 340
>KOG4814|consensus
Probab=93.40 E-value=0.58 Score=50.62 Aligned_cols=106 Identities=13% Similarity=-0.017 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH
Q psy17306 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699 (904)
Q Consensus 620 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 699 (904)
..+.+-|.-.++..+|..+++.|...+..-|.. ..+-..+....+++.||..+.+.++|+++++.|-+.+|.++-
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D-----~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l 429 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD-----NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPL 429 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch-----hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHH
Confidence 345666777788888999999777666533321 122334667889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhcccCC
Q psy17306 700 AYINLGNVLKEARIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 700 a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 730 (904)
.....-.+...-|+-++|+.+..+...+..+
T Consensus 430 ~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 430 CQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999888776544
No 341
>KOG3807|consensus
Probab=93.39 E-value=6.8 Score=39.09 Aligned_cols=139 Identities=14% Similarity=0.132 Sum_probs=84.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 90 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 90 (904)
-+..-...++..+..+-++....+++++|..+.++..++.-- .--..+|..+++++++... ..+.........|
T Consensus 187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~~ 260 (556)
T KOG3807|consen 187 EDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGE----TIYRQSQQCQHQS 260 (556)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhhc
Confidence 344445567778888888888888999999888888777532 2235677888888876422 2222233223333
Q ss_pred cHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh--hhHHHHHHHHHHHcCChH
Q psy17306 91 QLQEALENYRHAVRLKPDF-IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL--YCVRSDLGNLLKALGRLD 161 (904)
Q Consensus 91 ~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~ 161 (904)
.-.+|. .+.+.+. .-.-..++.|..++|+..+|++.++...+-.|-. ..++-++...+....-|.
T Consensus 261 ~~~da~------~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYA 328 (556)
T KOG3807|consen 261 PQHEAQ------LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYA 328 (556)
T ss_pred cchhhh------hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 322221 1222211 2234578999999999999999999988877632 123334444444443333
No 342
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.32 E-value=1 Score=42.03 Aligned_cols=100 Identities=23% Similarity=0.141 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCc
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPD---FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP 661 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p 661 (904)
..++..+|..|.+.|+.+.|++.|.++...... ..+.++++..+....+++.....+..++-... +. +
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~--------~~-~ 106 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI--------EK-G 106 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--------hc-c
Confidence 467889999999999999999999998776433 24577888888888899988888666554321 11 1
Q ss_pred chH----HHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 662 DFA----VAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 662 ~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
.+. ..-..-|..+...|+|.+|...|-.+..-
T Consensus 107 ~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 107 GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 111 12223355555666777766666655443
No 343
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.19 E-value=24 Score=42.28 Aligned_cols=94 Identities=10% Similarity=0.015 Sum_probs=46.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhh----c---CHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q psy17306 16 HREYQAGDYESAERHCMQLWRQETNN---TGVLLLLSSIHFQC----R---KLDKSAHFSTLAIKQNPLLAEAYSNLGNV 85 (904)
Q Consensus 16 ~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la~~ 85 (904)
.++.....|++|+..|+++-...|.. -++.+..|...+.+ | .+++|+..|++... .|..+.-|...|.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHH
Confidence 34455566666666666666666653 34445555444322 1 24444444443322 23334445555555
Q ss_pred HHHhCcHHHHHHHHHHHHhcCCCCH
Q psy17306 86 YKERGQLQEALENYRHAVRLKPDFI 110 (904)
Q Consensus 86 ~~~~g~~~~A~~~~~~al~~~p~~~ 110 (904)
|..+|+|++-++++.-+++..|..|
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 5555555555555555555544444
No 344
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.15 E-value=0.87 Score=34.84 Aligned_cols=66 Identities=12% Similarity=0.159 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH---HHHHhhcCHHHHHHHHHHHHhc
Q psy17306 6 QLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLS---SIHFQCRKLDKSAHFSTLAIKQ 71 (904)
Q Consensus 6 ~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la---~~~~~~g~~~~A~~~~~~al~~ 71 (904)
..+...++.|..++...+..+|+..+.++++..++.++-+..+| .+|...|+|.+++.+..+-+.+
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888889999999999999999988887766555554 4577788888887776655443
No 345
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.44 E-value=1.4 Score=36.01 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=45.2
Q ss_pred HHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCc---chHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q psy17306 629 LVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP---DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD 694 (904)
Q Consensus 629 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 694 (904)
..+.|+|.+|++.+.+.++.... . ...+ ....++.++|.++...|++++|+..+++|+.+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~----~-~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQ----S-NNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhh----c-ccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 35678999998887777653221 1 1111 245678899999999999999999999999983
No 346
>KOG1464|consensus
Probab=92.42 E-value=11 Score=36.53 Aligned_cols=119 Identities=8% Similarity=0.077 Sum_probs=70.8
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCc-----ccH-HHHHHHHHHHHHh
Q psy17306 20 QAGDYESAERHCMQLWRQETNNT----GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP-----LLA-EAYSNLGNVYKER 89 (904)
Q Consensus 20 ~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~-~~~~~la~~~~~~ 89 (904)
...++++|+..|+++++..|... .++..+..++++.|+|++-...|.+.+.--. +.. .....+-..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34588999999999999888753 4677788899999999999888888765211 111 1111111111122
Q ss_pred CcHHHHHHHHHHHHhc--CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 90 GQLQEALENYRHAVRL--KPD----FIDGYINLAAALVAAGDMEQAVQAYVTALQ 138 (904)
Q Consensus 90 g~~~~A~~~~~~al~~--~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 138 (904)
.+.+--...|+..+.. +.. ....-..+|.+|+..|+|.+-.+.+.+.-.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 2233333333333321 111 123345688888888888877777666543
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.30 E-value=2.1 Score=46.45 Aligned_cols=102 Identities=20% Similarity=0.201 Sum_probs=51.7
Q ss_pred HHHHcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHH
Q psy17306 17 REYQAGDYESAERHCM--QLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 94 (904)
Q Consensus 17 ~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 94 (904)
.....|+++++..... +.+..-| ..-...++..+.+.|..+.|+.+.+ +| ...+. +..+.|+.+.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~-----D~---~~rFe---LAl~lg~L~~ 336 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT-----DP---DHRFE---LALQLGNLDI 336 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHH---HHHHCT-HHH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC-----Ch---HHHhH---HHHhcCCHHH
Confidence 3456788888766664 2222222 3345556666777777777776433 22 23333 3345566666
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17306 95 ALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 136 (904)
Q Consensus 95 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 136 (904)
|.+..++ .+++..|..+|......|+++-|.++|.++
T Consensus 337 A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 337 ALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 6554322 234556677777777777777777666664
No 348
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.05 E-value=0.35 Score=47.39 Aligned_cols=88 Identities=11% Similarity=0.089 Sum_probs=74.2
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCChh
Q psy17306 66 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN-LAAALVAAGDMEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 66 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~ 144 (904)
.++....|+++..|...+..-.+.|.|.+--..|.+++..+|.+.+.|.. .+.-+...++.+.+...+.+++..+|+++
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP 176 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence 33444567888899998888888899999999999999999999999887 55567778999999999999999999999
Q ss_pred hHHHHHHHH
Q psy17306 145 CVRSDLGNL 153 (904)
Q Consensus 145 ~~~~~la~~ 153 (904)
..|...-+.
T Consensus 177 ~iw~eyfr~ 185 (435)
T COG5191 177 RIWIEYFRM 185 (435)
T ss_pred hHHHHHHHH
Confidence 888765443
No 349
>KOG2422|consensus
Probab=91.55 E-value=8.4 Score=41.83 Aligned_cols=174 Identities=19% Similarity=0.191 Sum_probs=107.4
Q ss_pred hCcHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCChhhHHHHHH
Q psy17306 89 RGQLQEALENYRHAVRL------------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY-----NPDLYCVRSDLG 151 (904)
Q Consensus 89 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la 151 (904)
...|++|...|.-++.. .|...+.+..++.++..+|+.+.|....++++=. .|.... .
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~-----~ 325 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIP-----F 325 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccc-----c
Confidence 45688999999888775 3667789999999999999999998888888632 221100 0
Q ss_pred HHHHH-cCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcC
Q psy17306 152 NLLKA-LGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQN 230 (904)
Q Consensus 152 ~~~~~-~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 230 (904)
..-++ --.+.+-...|-..+..-......|-+..|...++ -.+..+
T Consensus 326 sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cK---------------------------------lllsLd 372 (665)
T KOG2422|consen 326 SGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCK---------------------------------LLLSLD 372 (665)
T ss_pred cccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHH---------------------------------HHhhcC
Confidence 00000 00112222233333333444556666666666664 667778
Q ss_pred ch-hHHHHHHHHHHHH-HhCCHHHHHHHHHHHH-----hhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC
Q psy17306 231 PL-LAEAYSNLGNVYK-ERGQLQEALENYRHAV-----RLKPDFIDGYINLAAALVAAGD---MEQAVQAYVTALQYNPL 300 (904)
Q Consensus 231 ~~-~~~~~~~lg~~~~-~~g~~~~A~~~~~~al-----~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 300 (904)
|. +|.+...+..+|. +..+|.=-+..++..- ..-|+. ..-..+|..|..... -+.|...+.+|++..|.
T Consensus 373 p~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 373 PSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred CcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 87 6666666655553 4556665555555542 223443 334556777776665 57788999999999995
Q ss_pred c
Q psy17306 301 L 301 (904)
Q Consensus 301 ~ 301 (904)
.
T Consensus 452 v 452 (665)
T KOG2422|consen 452 V 452 (665)
T ss_pred H
Confidence 4
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.51 E-value=3.4 Score=44.94 Aligned_cols=129 Identities=21% Similarity=0.235 Sum_probs=68.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcc
Q psy17306 120 LVAAGDMEQAVQAYVTALQYNPDL-YCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVT 198 (904)
Q Consensus 120 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 198 (904)
....++++++.+..... ++-|.- ......++..+.+.|.++.|+.+..--...-.+..+.|+++.|.++..
T Consensus 271 av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~------- 342 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAK------- 342 (443)
T ss_dssp HHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCC-------
T ss_pred HHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHH-------
Confidence 33456666655555311 111211 233455666666666666666666444444555566677777666554
Q ss_pred hhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy17306 199 MKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 278 (904)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 278 (904)
..+++..|..||...+.+|+++-|..+|+++-. +..+..+|
T Consensus 343 -------------------------------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy 383 (443)
T PF04053_consen 343 -------------------------------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLY 383 (443)
T ss_dssp -------------------------------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHH
T ss_pred -------------------------------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHH
Confidence 222466888888888888888888888887422 33445555
Q ss_pred HHcCCHHHHHHHHHHHH
Q psy17306 279 VAAGDMEQAVQAYVTAL 295 (904)
Q Consensus 279 ~~~g~~~~A~~~~~~al 295 (904)
...|+.+.-.++...+.
T Consensus 384 ~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 384 SSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHCT-HHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 55666544444444433
No 351
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.45 E-value=0.48 Score=46.49 Aligned_cols=86 Identities=7% Similarity=0.059 Sum_probs=73.9
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHH-HHHHHHHhCcHHHHHHHHHHHHhcCCCCH
Q psy17306 32 MQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSN-LGNVYKERGQLQEALENYRHAVRLKPDFI 110 (904)
Q Consensus 32 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~ 110 (904)
.++-...|+++..|...+......|-|.+--..|..++..+|.+++.|.. -+.-+...++++.+...|.++++.+|++|
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP 176 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence 33444567889999998888888999999999999999999999999987 55667888999999999999999999999
Q ss_pred HHHHHHH
Q psy17306 111 DGYINLA 117 (904)
Q Consensus 111 ~~~~~la 117 (904)
..|...-
T Consensus 177 ~iw~eyf 183 (435)
T COG5191 177 RIWIEYF 183 (435)
T ss_pred hHHHHHH
Confidence 8876543
No 352
>KOG1538|consensus
Probab=91.20 E-value=6.9 Score=42.82 Aligned_cols=51 Identities=24% Similarity=0.208 Sum_probs=34.0
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 242 NVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295 (904)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 295 (904)
..+...++|++|...-++.-+.- +++++..|+-+....++++|.+.|.++=
T Consensus 781 qlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred hheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 44556778888877655533222 3467777777778888888877776653
No 353
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.94 E-value=0.72 Score=29.49 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHH--HHHHHhcCcCc
Q psy17306 665 VAWSNLGCVFNAQGEIWLAIHH--FEKAVSLDPNF 697 (904)
Q Consensus 665 ~a~~~lg~~~~~~g~~~~A~~~--~~~al~~~p~~ 697 (904)
+.++.+|..+..+|++++|+.. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4567788888888888888888 44666666643
No 354
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=90.61 E-value=12 Score=44.67 Aligned_cols=100 Identities=10% Similarity=0.033 Sum_probs=79.2
Q ss_pred hhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHH
Q psy17306 509 PNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAY 588 (904)
Q Consensus 509 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~ 588 (904)
...+..++..+.+.....|...+-.++.-..+.+....+.-......+.+|+.-|++ +...|..|--|
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 555 (932)
T PRK13184 488 EKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY------------LHGGVGAPLEY 555 (932)
T ss_pred hHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH------------hcCCCCCchHH
Confidence 355667788888888889998888877666666665555544444568888888887 55677778889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q psy17306 589 SNLGNVYKERGQLQEALENYRHAVRLKPDFID 620 (904)
Q Consensus 589 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (904)
...|.+|.++|++++-+++|.-+++..|.+|.
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999888765
No 355
>KOG0529|consensus
Probab=90.34 E-value=17 Score=37.95 Aligned_cols=146 Identities=16% Similarity=0.129 Sum_probs=108.0
Q ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHh------------hcCHHHHHHHHHHHHhcCcccHH
Q psy17306 11 LLELAHREYQAGDY-ESAERHCMQLWRQETNNTGVLLLLSSIHFQ------------CRKLDKSAHFSTLAIKQNPLLAE 77 (904)
Q Consensus 11 l~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~p~~~~ 77 (904)
.+..-......|.+ .++++.=.+.+..+|....+|...-.++.. ..-.++-+.+...++..+|+...
T Consensus 31 ~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~ 110 (421)
T KOG0529|consen 31 LFSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYG 110 (421)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHH
Confidence 34444444555655 456677777888899877666654433332 22456667888889999999999
Q ss_pred HHHHHHHHHHHhC--cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCChhhHHHHHH
Q psy17306 78 AYSNLGNVYKERG--QLQEALENYRHAVRLKPDFIDGYINLAAALVAAG----DMEQAVQAYVTALQYNPDLYCVRSDLG 151 (904)
Q Consensus 78 ~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la 151 (904)
+|+.+..++.+.+ ++..=++..+++++.+|.+..+|...=.+..... ...+=+++..+++..++.|..+|....
T Consensus 111 aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs 190 (421)
T KOG0529|consen 111 AWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRS 190 (421)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHH
Confidence 9999999998776 4688899999999999999888876655554432 356778889999999999999998887
Q ss_pred HHHHH
Q psy17306 152 NLLKA 156 (904)
Q Consensus 152 ~~~~~ 156 (904)
.++..
T Consensus 191 ~lL~~ 195 (421)
T KOG0529|consen 191 LLLST 195 (421)
T ss_pred HHHHH
Confidence 77653
No 356
>KOG0546|consensus
Probab=90.32 E-value=0.66 Score=46.77 Aligned_cols=89 Identities=19% Similarity=0.050 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHH
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEA 743 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 743 (904)
.....+++.+-.+.+.+..|+..-..++..++....+++..+..+....++++|++.+..+....|++..+...+.....
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 34556688888999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHH
Q psy17306 744 KTEELNKKF 752 (904)
Q Consensus 744 ~~~~~~~~~ 752 (904)
+..+.+...
T Consensus 355 ~~~~~~~~~ 363 (372)
T KOG0546|consen 355 KKKQYNRKQ 363 (372)
T ss_pred HHHHHHHHH
Confidence 887776654
No 357
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.05 E-value=4.5 Score=40.40 Aligned_cols=65 Identities=20% Similarity=0.330 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 297 (904)
Q Consensus 233 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 297 (904)
...++..++..+...|+++.++..+++.+..+|-+-..|..+-..|...|+...|+..|++.-+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 36778889999999999999999999999999999999999999999999999999999998875
No 358
>KOG1538|consensus
Probab=89.99 E-value=13 Score=40.83 Aligned_cols=209 Identities=19% Similarity=0.176 Sum_probs=114.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--------------hCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc--
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWR--------------QETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL-- 74 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~--------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 74 (904)
|-.+|...+..=+++-|.+.|.++-. .....| --..+|.++...|++.+|.++|.+.=..+.-
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlE 666 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLLADVFAYQGKFHEAAKLFKRSGHENRALE 666 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHH
Confidence 44566666666677777777766521 111112 2345677777788888888887653211100
Q ss_pred --cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHH----------HHHHhcC
Q psy17306 75 --LAEAYSNLGNVYKERGQLQEALENYRHAVRL--KPDFIDGYINLAAALVAAGDMEQAVQAY----------VTALQYN 140 (904)
Q Consensus 75 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~----------~~al~~~ 140 (904)
...-++..+.-+...|..++-....++-.+- +-..|. ..|..+...|+..+|+... +-+-+++
T Consensus 667 myTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld 743 (1081)
T KOG1538|consen 667 MYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD 743 (1081)
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc
Confidence 0112334455555555555444443332221 111122 2355666777777776532 2223334
Q ss_pred CChhhHHHHHHHHHHHcCChHHHHHHHHHHHh---hHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchH
Q psy17306 141 PDLYCVRSDLGNLLKALGRLDEAKDLYCVRSD---LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTL 217 (904)
Q Consensus 141 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (904)
....+.+..++..+.....+.-|.++|..... +..++...+++++|..+.++
T Consensus 744 ~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~------------------------- 798 (1081)
T KOG1538|consen 744 KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEK------------------------- 798 (1081)
T ss_pred hhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhh-------------------------
Confidence 44455566666666666666667666644333 33455566777777665542
Q ss_pred HHhhHHHHHhhcCch-hHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy17306 218 ESAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEALENYRHA 260 (904)
Q Consensus 218 ~a~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~a 260 (904)
.|. .+.+++-.|..+....++++|.+.|.+|
T Consensus 799 ------------hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 799 ------------HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ------------CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 222 2456667777777778888877766654
No 359
>KOG3807|consensus
Probab=89.97 E-value=23 Score=35.59 Aligned_cols=62 Identities=15% Similarity=0.107 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc--HHHHHHHHHHHHHhcchhHHHHHHHHhhcc
Q psy17306 666 AWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF--LDAYINLGNVLKEARIFDRANTLFYVSSYF 727 (904)
Q Consensus 666 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 727 (904)
.-..|+.|..++|+..+|++.|+...+-.|-. -.++.||-..+.+..-|.+...++-+--++
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44578999999999999999999988887743 356677888888888777777776655544
No 360
>KOG2581|consensus
Probab=89.86 E-value=6.4 Score=40.65 Aligned_cols=140 Identities=15% Similarity=0.058 Sum_probs=92.8
Q ss_pred hHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----C-CCcHHHH
Q psy17306 549 LTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-----K-PDFIDGY 622 (904)
Q Consensus 549 ~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~-p~~~~a~ 622 (904)
....+.++.+|..+-...+......-.+. .+--.+..|+.+..+|...|+...-...+...+.. + ...+...
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~~~nrRt--lD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLi 212 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASISIQNRRT--LDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLI 212 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcchhh--HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHH
Confidence 34446788888877766333211111111 11223678899999999999977666666655543 1 2234466
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc
Q psy17306 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697 (904)
Q Consensus 623 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 697 (904)
+.|-..|...+.|+.|.....+.. |-.. ..+...+..++.+|.+..-+++|..|.++|-.|+...|++
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~~------~pe~-~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKSV------YPEA-ASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhccc------Cccc-cccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 777888999999999988433321 1000 1122456778899999999999999999999999999975
No 361
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.66 E-value=2.2 Score=44.02 Aligned_cols=55 Identities=15% Similarity=0.188 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 113 YINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 113 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
-..+..||..+++.+-|+....+.+.++|....-+..-|.++..+.+|.+|...+
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSa 285 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSA 285 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999988888889988888888888888888888887655
No 362
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.58 E-value=0.52 Score=30.51 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 665 VAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 665 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
.++..||.+-...++|++|+..|+++|++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45677888888888888888888888776
No 363
>KOG0529|consensus
Probab=89.52 E-value=11 Score=39.27 Aligned_cols=123 Identities=16% Similarity=0.171 Sum_probs=94.9
Q ss_pred HHHhCCchHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC--HHHHHHHH
Q psy17306 577 AIKQNPLLAEAYSNLGNVYKER------------GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD--MEQAVQAY 642 (904)
Q Consensus 577 al~~~p~~~~~~~~lg~~~~~~------------g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~ 642 (904)
.+..+|+...+|+..-.++... .-.++-+.....+++.+|++..+|+.+.+++.+.+. +..=++
T Consensus 55 ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~-- 132 (421)
T KOG0529|consen 55 LLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQ-- 132 (421)
T ss_pred HHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHH--
Confidence 7788998888876654444321 235667788888999999999999999999998874 555566
Q ss_pred HHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCC----HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q psy17306 643 VTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE----IWLAIHHFEKAVSLDPNFLDAYINLGNVLKE 710 (904)
Q Consensus 643 ~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~----~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 710 (904)
.+.++++.+|.+-.+|...-.+...... ..+=+++.++++..++.|-.+|.+...++..
T Consensus 133 ---------lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~ 195 (421)
T KOG0529|consen 133 ---------LCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLST 195 (421)
T ss_pred ---------HHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 6777778888888888877666655433 4677888999999999999999998887753
No 364
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.95 E-value=0.55 Score=27.40 Aligned_cols=23 Identities=26% Similarity=0.066 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Q psy17306 666 AWSNLGCVFNAQGEIWLAIHHFE 688 (904)
Q Consensus 666 a~~~lg~~~~~~g~~~~A~~~~~ 688 (904)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34555555555555555555443
No 365
>KOG2561|consensus
Probab=88.47 E-value=14 Score=38.70 Aligned_cols=129 Identities=15% Similarity=-0.022 Sum_probs=74.2
Q ss_pred HHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhh
Q psy17306 538 ATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ---EALENYRHAVRL 614 (904)
Q Consensus 538 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~---~A~~~~~~al~~ 614 (904)
.++..+...|.+......|++|+.++-.+-+.-..|..+.++...+.+..-..+-+||+.+.+.. .|..-+.++-+-
T Consensus 161 mmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kg 240 (568)
T KOG2561|consen 161 MMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKG 240 (568)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHh
Confidence 34566777888888888888888887775555555556666666666666667777777766532 222222221110
Q ss_pred CCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchH---HHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy17306 615 KPDFIDGY-INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFA---VAWSNLGCVFNAQGEIWLAIHHFEKA 690 (904)
Q Consensus 615 ~p~~~~a~-~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~a 690 (904)
. ..+| -++..++.-.|. ..|..+ ..+..-|.+.+++|+-++|.++++.+
T Consensus 241 f---~~syGenl~Rl~~lKg~------------------------~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a 293 (568)
T KOG2561|consen 241 F---ERSYGENLSRLRSLKGG------------------------QSPERALILRLELLQGVVAYHQGQRDEAYEALESA 293 (568)
T ss_pred h---hhhhhhhhHhhhhccCC------------------------CChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 0 0000 011111111111 112211 23455688899999999999999988
Q ss_pred Hhc
Q psy17306 691 VSL 693 (904)
Q Consensus 691 l~~ 693 (904)
...
T Consensus 294 ~~~ 296 (568)
T KOG2561|consen 294 HAK 296 (568)
T ss_pred HHH
Confidence 665
No 366
>KOG2422|consensus
Probab=88.43 E-value=26 Score=38.29 Aligned_cols=101 Identities=12% Similarity=0.141 Sum_probs=71.0
Q ss_pred hcCHHHHHHHHHHHHhc------------CcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc-----------------
Q psy17306 55 CRKLDKSAHFSTLAIKQ------------NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL----------------- 105 (904)
Q Consensus 55 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------- 105 (904)
...|++|...|.-++.. +|.....+..++.+...+|+.+-|....++++-.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34577888877777653 4556778888999999999988887777776632
Q ss_pred ----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHH
Q psy17306 106 ----KPDFID---GYINLAAALVAAGDMEQAVQAYVTALQYNPD-LYCVRSDLGNLLK 155 (904)
Q Consensus 106 ----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 155 (904)
.|.+-. +++..-..+.+.|-+.-|.++.+-.+.++|. ++-+...+..+|.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
Confidence 123322 3334445556789999999999999999998 7766555555553
No 367
>KOG3783|consensus
Probab=88.40 E-value=42 Score=36.57 Aligned_cols=91 Identities=12% Similarity=-0.006 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHhCcHHHHHHHHH
Q psy17306 25 ESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL----LAEAYSNLGNVYKERGQLQEALENYR 100 (904)
Q Consensus 25 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~ 100 (904)
....+.+.......|.++-..+..+.++...|+.+.|+..++..+. +. ....++.+|.++..+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3444455555667899888888899999999998888999998887 33 34467789999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHH
Q psy17306 101 HAVRLKPDFIDGYINLA 117 (904)
Q Consensus 101 ~al~~~p~~~~~~~~la 117 (904)
.......-.--.|..++
T Consensus 328 ~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFA 344 (546)
T ss_pred HHHhhhhhhHHHHHHHH
Confidence 98877644444444444
No 368
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.39 E-value=0.53 Score=27.47 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHH
Q psy17306 699 DAYINLGNVLKEARIFDRANTLFY 722 (904)
Q Consensus 699 ~a~~~la~~~~~~g~~~~A~~~~~ 722 (904)
.+...+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 578899999999999999999875
No 369
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=88.39 E-value=4.7 Score=32.94 Aligned_cols=54 Identities=24% Similarity=0.278 Sum_probs=43.7
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 595 YKERGQLQEALENYRHAVRLKPD---------FIDGYINLAAALVAAGDMEQAVQAYVTALQY 648 (904)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 648 (904)
..+.|++..|++.+.+....... ...+..++|.++...|++++|+..+++++++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35679999999988888876321 2457889999999999999999988888864
No 370
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=87.88 E-value=9.3 Score=40.85 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--HHHHH--HHHHHhhcCHHHHHHHHHHHHhc
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTG--VLLLL--SSIHFQCRKLDKSAHFSTLAIKQ 71 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 71 (904)
.+.-....+..+++.++|..|..++..+...-|.+.. .+..+ |.-+....++.+|.+.++..+..
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4556778899999999999999999999886344333 33333 44456788999999999988764
No 371
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.88 E-value=0.9 Score=29.43 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 621 GYINLAAALVAAGDMEQAVQAYVTALQ 647 (904)
Q Consensus 621 a~~~lg~~~~~~g~~~~A~~~~~~al~ 647 (904)
++..||.+-...++|++|+..|+++|+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445555555555555555555555554
No 372
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=87.66 E-value=15 Score=32.78 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=15.9
Q ss_pred CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy17306 90 GQLQEALENYRHAVRLKPDFIDGYINLAAALVA 122 (904)
Q Consensus 90 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 122 (904)
+.....+.+++.++..++.++..+..+..+|..
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 444555555555554444444444444444443
No 373
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=87.60 E-value=6.4 Score=38.77 Aligned_cols=72 Identities=15% Similarity=0.021 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHH
Q psy17306 78 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSD 149 (904)
Q Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 149 (904)
...++=..+...++++.|..+.++.+.++|.++.-+...|.+|.++|.+.-|++.++..++.-|+.+.+-..
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 344555677888999999999999999999999889999999999999999999999999998888755433
No 374
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=87.23 E-value=5.5 Score=39.22 Aligned_cols=74 Identities=15% Similarity=0.045 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHH
Q psy17306 666 AWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILE 739 (904)
Q Consensus 666 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~ 739 (904)
...++=.++...++++.|..+-++.+.++|+++.-+...|.+|.++|-+.-|++.+...+...|++.....+..
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 44555566777788888888888888888888888888888888888888888888887777777665555433
No 375
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.17 E-value=6.4 Score=36.89 Aligned_cols=76 Identities=14% Similarity=0.002 Sum_probs=56.0
Q ss_pred hhcCHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHH
Q psy17306 54 QCRKLDKSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD----FIDGYINLAAALVAAGDMEQ 128 (904)
Q Consensus 54 ~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~ 128 (904)
.+-.-+.|...|-++-.. .-+++...+.+|..|. ..+.++|+..+.+++++.+. +++++..|+.++...|+++.
T Consensus 118 sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 333446677777655432 1236778888887776 56889999999999988433 48899999999999999988
Q ss_pred HH
Q psy17306 129 AV 130 (904)
Q Consensus 129 A~ 130 (904)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 75
No 376
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.14 E-value=3.2 Score=41.42 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Q psy17306 24 YESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAV 103 (904)
Q Consensus 24 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 103 (904)
|..=+....+.++. ....++..++..+...|+++.+...+++.+..+|.+-..|..+-..|+..|+...|+..|++.-
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 55555555555543 2467888999999999999999999999999999999999999999999999999999999987
Q ss_pred hc
Q psy17306 104 RL 105 (904)
Q Consensus 104 ~~ 105 (904)
..
T Consensus 215 ~~ 216 (280)
T COG3629 215 KT 216 (280)
T ss_pred HH
Confidence 74
No 377
>KOG0128|consensus
Probab=86.33 E-value=70 Score=36.89 Aligned_cols=72 Identities=11% Similarity=-0.026 Sum_probs=53.2
Q ss_pred HHHHHHHHH-hCCCHHHHHHHHHHHHhcCcCcHH-HHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHH
Q psy17306 667 WSNLGCVFN-AQGEIWLAIHHFEKAVSLDPNFLD-AYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVIL 738 (904)
Q Consensus 667 ~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 738 (904)
+-..|.++. .+++.+.|....+..+...-.... .|.....+-...|+...|..+++++.....+++++...+
T Consensus 464 ~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~ 537 (881)
T KOG0128|consen 464 LQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVL 537 (881)
T ss_pred HHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHH
Confidence 333444443 357888888888887777655544 788888888899999999999999998877776555443
No 378
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=86.26 E-value=2.6 Score=26.98 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCC
Q psy17306 586 EAYSNLGNVYKERGQLQEALEN--YRHAVRLKPD 617 (904)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~--~~~al~~~p~ 617 (904)
+.++.+|..+...|++++|+.. |.-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4566677777777777777777 3355555554
No 379
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.22 E-value=72 Score=36.95 Aligned_cols=145 Identities=14% Similarity=-0.040 Sum_probs=83.7
Q ss_pred hHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy17306 549 LTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 628 (904)
Q Consensus 549 ~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 628 (904)
+....++++.+...+.. .-..........|.+|+++...|+.++|...|+++.. +.+ .|-.|+.-
T Consensus 321 ~Al~~~dw~~~~~~i~~-----------L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~~--fYG~LAa~ 385 (644)
T PRK11619 321 MALGTGDRRGLNTWLAR-----------LPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QRG--FYPMVAAQ 385 (644)
T ss_pred HHHHccCHHHHHHHHHh-----------cCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CCC--cHHHHHHH
Confidence 34456677666655555 2121223566777788887778888888888887644 222 22222221
Q ss_pred HHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy17306 629 LVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708 (904)
Q Consensus 629 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 708 (904)
. +|..-. ... ...| .-...+... .-...+..+...|+...|...+..++.. .++.-...++.+-
T Consensus 386 ~--Lg~~~~-~~~-----~~~~-~~~~~~~~~-----~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A 449 (644)
T PRK11619 386 R--LGEEYP-LKI-----DKAP-KPDSALTQG-----PEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYA 449 (644)
T ss_pred H--cCCCCC-CCC-----CCCC-chhhhhccC-----hHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHH
Confidence 1 121100 000 0000 000011111 2345677788899999999999988875 3456678888888
Q ss_pred HHhcchhHHHHHHHHh
Q psy17306 709 KEARIFDRANTLFYVS 724 (904)
Q Consensus 709 ~~~g~~~~A~~~~~~a 724 (904)
...|.++.|+....++
T Consensus 450 ~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 450 FNQQWWDLSVQATIAG 465 (644)
T ss_pred HHCCCHHHHHHHHhhc
Confidence 8999999998877654
No 380
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.91 E-value=8.2 Score=36.19 Aligned_cols=56 Identities=13% Similarity=0.157 Sum_probs=48.9
Q ss_pred chHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC----cHHHHHHHHHHHHHhcchhHHH
Q psy17306 662 DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN----FLDAYINLGNVLKEARIFDRAN 718 (904)
Q Consensus 662 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~A~ 718 (904)
+++...+.||..|. ..+.++|+..+.++|++.+. +++++..|+.++..+|+++.|-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 56889999998777 67889999999999999433 5999999999999999999884
No 381
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.21 E-value=11 Score=29.16 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=10.9
Q ss_pred HHHhCcHHHHHHHHHHHHhcCCCC
Q psy17306 86 YKERGQLQEALENYRHAVRLKPDF 109 (904)
Q Consensus 86 ~~~~g~~~~A~~~~~~al~~~p~~ 109 (904)
++...+.++|+..++++++..++.
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~ 39 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDR 39 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCCh
Confidence 334444444444444444444333
No 382
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.22 E-value=73 Score=34.51 Aligned_cols=87 Identities=17% Similarity=0.049 Sum_probs=61.8
Q ss_pred HHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q psy17306 50 SIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129 (904)
Q Consensus 50 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 129 (904)
.++...-++.-....+.+++... .+..+++.++.||... ..++=....++.++.+-++...-..++..|.. ++...+
T Consensus 74 ~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~ 150 (711)
T COG1747 74 TIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKA 150 (711)
T ss_pred HHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhH
Confidence 33334444555556667776654 3477888888888887 45677778888888887777777777777766 778888
Q ss_pred HHHHHHHHhc
Q psy17306 130 VQAYVTALQY 139 (904)
Q Consensus 130 ~~~~~~al~~ 139 (904)
..+|.+++..
T Consensus 151 a~~f~Ka~yr 160 (711)
T COG1747 151 AEFFGKALYR 160 (711)
T ss_pred HHHHHHHHHH
Confidence 8888888754
No 383
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=82.76 E-value=7.4 Score=29.86 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHH
Q psy17306 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSN 669 (904)
Q Consensus 620 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~ 669 (904)
..+...|.-+-..|++++|+.+|+++++ .+.+++...|+.+.....
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe----~L~q~~~~~pD~~~k~~y 52 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIE----VLSQIVKNYPDSPTRLIY 52 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----HHHHHHHhCCChHHHHHH
Confidence 3445556666778999999999988888 788888888887664443
No 384
>KOG0546|consensus
Probab=81.74 E-value=2.9 Score=42.36 Aligned_cols=114 Identities=23% Similarity=0.173 Sum_probs=85.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-----------CC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCh
Q psy17306 590 NLGNVYKERGQLQEALENYRHAVRLK-----------PD--------FIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 650 (904)
Q Consensus 590 ~lg~~~~~~g~~~~A~~~~~~al~~~-----------p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 650 (904)
..|.-....++++.|..-|.+++..- ++ -...+.+++.+-...+.+..|+.
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~---------- 296 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARF---------- 296 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCccee----------
Confidence 34555667777888877777776531 11 12345667777778888888877
Q ss_pred hhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcch
Q psy17306 651 SCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIF 714 (904)
Q Consensus 651 ~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 714 (904)
....++..++....+++.+|..+....++++|++.+..+....|++..+...+..+-....++
T Consensus 297 -~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 297 -RTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred -ccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 555566678888999999999999999999999999999999999988877776665544433
No 385
>KOG2581|consensus
Probab=81.02 E-value=77 Score=33.26 Aligned_cols=127 Identities=13% Similarity=0.071 Sum_probs=91.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCC-C--------CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc-----C-cccHHHHHH
Q psy17306 17 REYQAGDYESAERHCMQLWRQET-N--------NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ-----N-PLLAEAYSN 81 (904)
Q Consensus 17 ~~~~~g~~~~A~~~~~~~l~~~p-~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~-p~~~~~~~~ 81 (904)
.++.+.++.+|..+-+..+..-. . .+..|+.+..+|-..|+...-...+...+.. + ...+.....
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~ 214 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINL 214 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHH
Confidence 34557899999988877654211 1 2456777777888888876666666655542 1 123456667
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q psy17306 82 LGNVYKERGQLQEALENYRHAVRL----KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL 143 (904)
Q Consensus 82 la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 143 (904)
+-..|...+.|+.|-....++.-- +...+..++.+|.+..-+++|..|.+++-+|+...|.+
T Consensus 215 LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 215 LLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 778888999999998887776521 11235567889999999999999999999999999975
No 386
>KOG4279|consensus
Probab=81.00 E-value=61 Score=36.71 Aligned_cols=148 Identities=18% Similarity=0.194 Sum_probs=98.2
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccH------HHHHHHHHHHH---HhCcHHHHHHHHHHHHhcC-CCCH
Q psy17306 41 NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLA------EAYSNLGNVYK---ERGQLQEALENYRHAVRLK-PDFI 110 (904)
Q Consensus 41 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~---~~g~~~~A~~~~~~al~~~-p~~~ 110 (904)
+++....+-..|....+|+.-+++.+..-++ |+.. ...+..+.++- +-|+-++|+...-.+++.. |-.+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 5777888888899999999888887765443 3211 11222233332 3478899999888888764 4556
Q ss_pred HHHHHHHHHHHH---------cCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCC-hHHHHHHHHHHHhhHHHHHHc
Q psy17306 111 DGYINLAAALVA---------AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGR-LDEAKDLYCVRSDLGNLLKAL 180 (904)
Q Consensus 111 ~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~l~~~~~~~ 180 (904)
+.+...|++|-. .+..+.|+++|+++.+..|... .-.+++.++...|. ++...++-..-..++.+..+.
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrK 357 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRK 357 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhcc
Confidence 777777777753 4567889999999999999753 33456666666553 555555555566666667666
Q ss_pred CCHHHHHHHH
Q psy17306 181 GRLDEAKNLH 190 (904)
Q Consensus 181 g~~~~A~~~~ 190 (904)
|..++-..+.
T Consensus 358 G~leklq~YW 367 (1226)
T KOG4279|consen 358 GALEKLQEYW 367 (1226)
T ss_pred chHHHHHHHH
Confidence 6665544433
No 387
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.40 E-value=24 Score=34.98 Aligned_cols=61 Identities=25% Similarity=0.314 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 587 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 647 (904)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 647 (904)
.+...+..|...|.+.+|+++.++++.++|-+...+..+-.++..+|+--.|++.|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4556677888999999999999999999999999999999999999999999998876544
No 388
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.23 E-value=6.5 Score=38.74 Aligned_cols=60 Identities=17% Similarity=0.043 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 666 AWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 666 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
.+...+..|...|.+.+|+.+.++++.++|-+...+..+-.++...|+--.|...|++..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 445567888999999999999999999999999999999999999999988888886553
No 389
>KOG0276|consensus
Probab=80.10 E-value=27 Score=38.38 Aligned_cols=111 Identities=18% Similarity=0.239 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHH
Q psy17306 587 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVA 666 (904)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a 666 (904)
....++..+..+|-.++| |++.++ +.-.+ .+..+.|+++.|.+ .. ...++..-
T Consensus 616 ~rt~va~Fle~~g~~e~A-------L~~s~D-~d~rF---elal~lgrl~iA~~-----------la-----~e~~s~~K 668 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQA-------LELSTD-PDQRF---ELALKLGRLDIAFD-----------LA-----VEANSEVK 668 (794)
T ss_pred hhhhHHhHhhhccchHhh-------hhcCCC-hhhhh---hhhhhcCcHHHHHH-----------HH-----HhhcchHH
Confidence 344455555555554444 444443 22222 23445677777766 22 22344566
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc--------CcCcHHHHHHH------------H-HHHHHhcchhHHHHHHHHh
Q psy17306 667 WSNLGCVFNAQGEIWLAIHHFEKAVSL--------DPNFLDAYINL------------G-NVLKEARIFDRANTLFYVS 724 (904)
Q Consensus 667 ~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l------------a-~~~~~~g~~~~A~~~~~~a 724 (904)
|-.||.+....|++..|.++|.++... ...+...+..+ | .+|...|+++++++.+.+.
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 888888888888888888888887665 12233333333 3 3567778888888877665
No 390
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=79.92 E-value=49 Score=32.63 Aligned_cols=49 Identities=22% Similarity=0.242 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhh-----CCCCHH---HHHHHHHHH-HHcCCHHHHHHHHHHHHhhC
Q psy17306 250 LQEALENYRHAVRL-----KPDFID---GYINLAAAL-VAAGDMEQAVQAYVTALQYN 298 (904)
Q Consensus 250 ~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~-~~~g~~~~A~~~~~~al~~~ 298 (904)
.+.|...|++|+.+ .|.+|. ..++.+..+ ..+|+.++|+...++++...
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 36777888887764 566653 334444444 45899999999988887643
No 391
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=79.08 E-value=74 Score=31.95 Aligned_cols=68 Identities=13% Similarity=-0.044 Sum_probs=37.8
Q ss_pred CcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy17306 617 DFIDGYINLAAALVAAGDME-QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEK 689 (904)
Q Consensus 617 ~~~~a~~~lg~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 689 (904)
.+.....+++.+....+.-+ +-..+..++++ +- +.-...-.++..+..+|..+.+.|++.+|..+|-.
T Consensus 47 ~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~----WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 47 VDEESIARLIELISLFPPEEPERKKFIKAAIK----WS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp -SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHH----HH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhCCCCcchHHHHHHHHHH----HH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 33444456666665554322 23333344443 32 32233446788999999999999999999888753
No 392
>KOG2114|consensus
Probab=78.87 E-value=51 Score=37.95 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=56.4
Q ss_pred HHHHhhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHH
Q psy17306 50 SIHFQCRKLDKSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEALENYRHAVRL-KPDFIDGYINLAAALVAAGDME 127 (904)
Q Consensus 50 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~ 127 (904)
.+..+...|+-|+.+.+.- ..++. -...+...|.-++..|++++|...|-+.+.. +|...-- -+....+..
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~------kfLdaq~Ik 414 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIK------KFLDAQRIK 414 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHH------HhcCHHHHH
Confidence 3445555666666655432 12222 3456667777777788888888777777654 2321111 112222233
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 128 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
+=..+++...+..-.+..--..|-.+|.++++.+.-.+..
T Consensus 415 nLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI 454 (933)
T KOG2114|consen 415 NLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFI 454 (933)
T ss_pred HHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHH
Confidence 3333444444433333333445556677766666554433
No 393
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=78.71 E-value=7.4 Score=34.45 Aligned_cols=48 Identities=25% Similarity=0.154 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCR 56 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 56 (904)
+.++..|...+..|++.-|..+.+.++..+|++.++...++.++...|
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555444443
No 394
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=78.23 E-value=76 Score=31.61 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPD------FIDGYINLAAALVAAGDMEQAVQAYVTAL 295 (904)
Q Consensus 234 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al 295 (904)
......+|..|+..|++++|+++|+.+...... ...++..+..|+...|+.+..+.+.-+.+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 456678999999999999999999999765322 24577788899999999998887766554
No 395
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=77.83 E-value=7.7 Score=39.65 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=48.0
Q ss_pred HHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy17306 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 631 (904)
Q Consensus 577 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 631 (904)
|+...|++...++.+|.++...|+.-.|+-+|-+++-.....+.+..||..++..
T Consensus 8 A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 8 AIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred HHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998765668899999999888
No 396
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=77.55 E-value=13 Score=28.64 Aligned_cols=51 Identities=10% Similarity=0.036 Sum_probs=37.1
Q ss_pred HHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHH
Q psy17306 540 KYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNV 594 (904)
Q Consensus 540 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~ 594 (904)
+..+...+.-+-..|++.+|+.+|++ ++..+.+++...|+++.-......+
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~----aIe~L~q~~~~~pD~~~k~~yr~ki 56 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKK----AIEVLSQIVKNYPDSPTRLIYEQMI 56 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH----HHHHHHHHHHhCCChHHHHHHHHHH
Confidence 44556777788889999999999988 6666677777888777644444433
No 397
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.45 E-value=19 Score=34.12 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=42.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc
Q psy17306 16 HREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL 75 (904)
Q Consensus 16 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 75 (904)
..+++.+...+|+...+.-++..|.+......+-.++.-.|+|++|...++-+-...|+.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 445666777777777777777777777777777777777777777777777776666653
No 398
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=76.34 E-value=8.6 Score=39.28 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=51.1
Q ss_pred hHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q psy17306 652 CYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKE 710 (904)
Q Consensus 652 ~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 710 (904)
+|.+|+.+.|++...|+.||.++...|+.-.|+-+|-+++-.....+.+..||..++.+
T Consensus 4 ~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 4 YYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 77788889999999999999999999999999999999998866679999999999988
No 399
>KOG0276|consensus
Probab=76.22 E-value=35 Score=37.54 Aligned_cols=144 Identities=15% Similarity=0.059 Sum_probs=85.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHH
Q psy17306 17 REYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAL 96 (904)
Q Consensus 17 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 96 (904)
.+...|+++.|...+-.+ | -+.....+..+-.+|-.++|++ +.++ +.-. =.+..+.|+++.|.
T Consensus 595 t~vmrrd~~~a~~vLp~I----~--k~~rt~va~Fle~~g~~e~AL~-------~s~D-~d~r---Felal~lgrl~iA~ 657 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTI----P--KEIRTKVAHFLESQGMKEQALE-------LSTD-PDQR---FELALKLGRLDIAF 657 (794)
T ss_pred HHhhhccccccccccccC----c--hhhhhhHHhHhhhccchHhhhh-------cCCC-hhhh---hhhhhhcCcHHHHH
Confidence 344556666665533222 2 2344455555556665555544 3332 1112 23446678888877
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCChhhHHHHHHHHHHHcCChHHHHHHHH
Q psy17306 97 ENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY--------NPDLYCVRSDLGNLLKALGRLDEAKDLYC 168 (904)
Q Consensus 97 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (904)
....++ ++..-|..||.+....|++..|.+++.++... ...+...+..+|....+.|+..-|.-.
T Consensus 658 ~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~-- 730 (794)
T KOG0276|consen 658 DLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLA-- 730 (794)
T ss_pred HHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHH--
Confidence 665543 45666888888888888888888888887543 234455566666666666666555433
Q ss_pred HHHhhHHHHHHcCCHHHHHHHHhh
Q psy17306 169 VRSDLGNLLKALGRLDEAKNLHTE 192 (904)
Q Consensus 169 ~~~~l~~~~~~~g~~~~A~~~~~~ 192 (904)
+...|++++++.++.+
T Consensus 731 --------~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 731 --------YFLSGDYEECLELLIS 746 (794)
T ss_pred --------HHHcCCHHHHHHHHHh
Confidence 4567777777777654
No 400
>PF12854 PPR_1: PPR repeat
Probab=76.10 E-value=6.2 Score=24.81 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEK 689 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~ 689 (904)
...|..+-..|.+.|+.++|.+.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 46788888888888888888888875
No 401
>KOG1920|consensus
Probab=75.56 E-value=75 Score=38.32 Aligned_cols=91 Identities=18% Similarity=0.131 Sum_probs=50.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHH---HHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHH
Q psy17306 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAW---SNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYI 702 (904)
Q Consensus 626 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~---~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 702 (904)
|.+|...|+.++|++.|..+..-.. .+.-+..+.+...... ..|..-+..++++-+|-+.....++ +|.-+.
T Consensus 959 al~Ye~~GklekAl~a~~~~~dWr~-~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-d~~~av--- 1033 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYKECGDWRE-ALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-DPEEAV--- 1033 (1265)
T ss_pred HHHHHHhccHHHHHHHHHHhccHHH-HHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc-CHHHHH---
Confidence 4455566666666666665552111 1111112233333333 6677778888998888888887766 333332
Q ss_pred HHHHHHHHhcchhHHHHHHHHh
Q psy17306 703 NLGNVLKEARIFDRANTLFYVS 724 (904)
Q Consensus 703 ~la~~~~~~g~~~~A~~~~~~a 724 (904)
..|++...|++|+..-.++
T Consensus 1034 ---~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1034 ---ALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred ---HHHhhHhHHHHHHHHHHhc
Confidence 2344555666666554444
No 402
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=74.39 E-value=7.5 Score=23.64 Aligned_cols=30 Identities=20% Similarity=0.373 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy17306 599 GQLQEALENYRHAVRLKPDFIDGYINLAAA 628 (904)
Q Consensus 599 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 628 (904)
|+.+.|...|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999999888888876654
No 403
>KOG2063|consensus
Probab=74.36 E-value=1.8e+02 Score=34.64 Aligned_cols=173 Identities=17% Similarity=0.126 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHhhcCH--HHHHHHHHHHHhcCcccHH------
Q psy17306 10 GLLELAHREYQAGDYESAERHCMQLWRQ----ETNNTGVLLLLSSIHFQCRKL--DKSAHFSTLAIKQNPLLAE------ 77 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~------ 77 (904)
-+..++..|...|..++|++++.+.... ++.....+-..-..+-..+.- +-..++-.-.++.+|....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 4677888999999999999999998773 333344444444444445544 6666666666666664221
Q ss_pred -----HHHHHHH--HHHHhCcHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc--------CCHHHHHHH--HHHHHhc
Q psy17306 78 -----AYSNLGN--VYKERGQLQEALENYRHAVRLKPD-FIDGYINLAAALVAA--------GDMEQAVQA--YVTALQY 139 (904)
Q Consensus 78 -----~~~~la~--~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~--------g~~~~A~~~--~~~al~~ 139 (904)
.-..... -+......+-++.+++.++..+.. ....+..++..|... ++-+++.+. .++....
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 1111122 245667778889999998877644 334444444444321 222233333 2222211
Q ss_pred -------CCCh-------hhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHh
Q psy17306 140 -------NPDL-------YCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHT 191 (904)
Q Consensus 140 -------~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 191 (904)
+|+. ...+...+.++.+.|+.++|+..+ ....++++.|..++.
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iy---------v~~L~d~~~A~~Yc~ 722 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIY---------VHELDDIDAAESYCL 722 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHH---------HHHhcchhHHHHHHH
Confidence 2221 245566677777778888887777 666666666666665
No 404
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=73.84 E-value=1.3e+02 Score=32.69 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhc
Q psy17306 44 VLLLLSSIHFQCRKLDKSAHFSTLAIKQ 71 (904)
Q Consensus 44 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 71 (904)
....+|..++-.|+|+-|...|+.+.+-
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~D 237 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKD 237 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 4556899999999999999999988763
No 405
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=73.76 E-value=6.3 Score=41.77 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcC---------cCcHHHHHHHHHHHHHhcchhHHHHHHHHhhc
Q psy17306 666 AWSNLGCVFNAQGEIWLAIHHFEKAVSLD---------PNFLDAYINLGNVLKEARIFDRANTLFYVSSY 726 (904)
Q Consensus 666 a~~~lg~~~~~~g~~~~A~~~~~~al~~~---------p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 726 (904)
+...|.+++..+|+|..|++.++-. +++ +-+...++.+|.+|+.+++|.+|+..|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999987743 222 22467899999999999999999999988764
No 406
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=73.47 E-value=9 Score=23.26 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy17306 22 GDYESAERHCMQLWRQETNNTGVLLLLS 49 (904)
Q Consensus 22 g~~~~A~~~~~~~l~~~p~~~~~~~~la 49 (904)
|+++.|..+|++++...|.++..|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 3455566666666666666555555444
No 407
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.37 E-value=7.3 Score=26.29 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 12 LELAHREYQAGDYESAERHCMQLWR 36 (904)
Q Consensus 12 ~~~a~~~~~~g~~~~A~~~~~~~l~ 36 (904)
+.+|..|...|+.+.|..++++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5667777777777777777777764
No 408
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=72.45 E-value=1e+02 Score=32.68 Aligned_cols=60 Identities=18% Similarity=0.166 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHH--HHHHHhhcCHHHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNN-----TGVLLLL--SSIHFQCRKLDKSAHFSTL 67 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~l--a~~~~~~g~~~~A~~~~~~ 67 (904)
+..-...+..+++.++|..|..+|+.++...++. ...+..+ |..+...-++++|.+.+++
T Consensus 130 ~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 130 GNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3344456778899999999999999998875431 2233334 3445567788899998885
No 409
>PF12854 PPR_1: PPR repeat
Probab=72.26 E-value=7.4 Score=24.44 Aligned_cols=28 Identities=25% Similarity=0.069 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHHHHhcchhHHHHHHHHh
Q psy17306 697 FLDAYINLGNVLKEARIFDRANTLFYVS 724 (904)
Q Consensus 697 ~~~a~~~la~~~~~~g~~~~A~~~~~~a 724 (904)
+...|..+-..|.+.|+.++|.++|++.
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 5678899999999999999999999764
No 410
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=71.88 E-value=7.1 Score=41.39 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 78 AYSNLGNVYKERGQLQEALENYRHAVRLK---------PDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 138 (904)
Q Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 138 (904)
+...+.+++.-+|+|..|++.++-. +++ +-....++..|.+|+.+++|.+|++.|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888999999999987653 222 23455788999999999999999999998764
No 411
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.75 E-value=7.5 Score=26.24 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=15.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh
Q psy17306 668 SNLGCVFNAQGEIWLAIHHFEKAVS 692 (904)
Q Consensus 668 ~~lg~~~~~~g~~~~A~~~~~~al~ 692 (904)
+.|+.+|..+|+.+.|.+.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3556666666666666666666663
No 412
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.62 E-value=23 Score=33.49 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=57.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc---HHHHHH
Q psy17306 627 AALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF---LDAYIN 703 (904)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~ 703 (904)
.-+.+.+..++|+. ..+.-++.+|.+......+=.+++-.|+|++|...++-+-.+.|++ ...|.+
T Consensus 9 seLL~~~sL~dai~-----------~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~ 77 (273)
T COG4455 9 SELLDDNSLQDAIG-----------LARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRH 77 (273)
T ss_pred HHHHHhccHHHHHH-----------HHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence 34566788889998 7777788899999888889999999999999999999999999986 344445
Q ss_pred HHHHH
Q psy17306 704 LGNVL 708 (904)
Q Consensus 704 la~~~ 708 (904)
+-.|-
T Consensus 78 lir~e 82 (273)
T COG4455 78 LIRCE 82 (273)
T ss_pred HHHHH
Confidence 54443
No 413
>PF13041 PPR_2: PPR repeat family
Probab=71.17 E-value=10 Score=26.29 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 665 VAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 665 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
..|..+-..|.+.|++++|.+.|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 34555555555555555555555555544
No 414
>PRK11619 lytic murein transglycosylase; Provisional
Probab=69.92 E-value=2.2e+02 Score=33.11 Aligned_cols=146 Identities=17% Similarity=0.089 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYK- 87 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~- 87 (904)
+..|..|...+..|++..+.....++ ...|-. .+.....+....+. ....-+...+..+|+.+..-........
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL~--~yl~y~~L~~~l~~--~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~ 108 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPLY--PYLEYRQLTQDLMN--QPAVQVTNFIRANPTLPPARSLQSRFVNE 108 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCcH--hHHHHHHHHhcccc--CCHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 56788999999999999987766654 444432 22222222222221 1122445555667776665555554443
Q ss_pred --HhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHH
Q psy17306 88 --ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEA 163 (904)
Q Consensus 88 --~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 163 (904)
+.+++..-+.++ ...|.+....+..+......|+.++|.....++-......+.....+-..+...|.....
T Consensus 109 La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~ 182 (644)
T PRK11619 109 LARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPL 182 (644)
T ss_pred HHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHH
Confidence 345555555422 234788888888889999999998888888777655554555555555555555555443
No 415
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=69.89 E-value=37 Score=33.86 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17306 78 AYSNLGNVYKERGQLQEALENYRHAVRLKPD------FIDGYINLAAALVAAGDMEQAVQAYVT 135 (904)
Q Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~ 135 (904)
....+|..|+..|++++|+..|+.+...... ...++..+..|+...|+.+..+.+.-+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4445666666666666666666666443211 123445555666666666655554433
No 416
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=69.87 E-value=48 Score=32.69 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhc-----CcCcH---HHHHHHHHHH-HHhcchhHHHHHHHHhhccc
Q psy17306 680 IWLAIHHFEKAVSL-----DPNFL---DAYINLGNVL-KEARIFDRANTLFYVSSYFM 728 (904)
Q Consensus 680 ~~~A~~~~~~al~~-----~p~~~---~a~~~la~~~-~~~g~~~~A~~~~~~a~~~~ 728 (904)
.++|...|++|+++ .|.+| ....|.+..| ...|+.++|.++-+++.+..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 47888999998886 45554 3455566555 55899999988887776543
No 417
>PF13041 PPR_2: PPR repeat family
Probab=69.79 E-value=21 Score=24.71 Aligned_cols=42 Identities=26% Similarity=0.379 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCcHHHHHHHHH
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLK--PDFIDGYINLAA 627 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~ 627 (904)
..+|..+-..+.+.|++++|.+.|++..+.. |+ ...+..+-.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~-~~Ty~~li~ 46 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPD-SYTYNILIN 46 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Confidence 4567777888888888888888888888753 43 444544443
No 418
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=69.47 E-value=85 Score=33.65 Aligned_cols=60 Identities=15% Similarity=0.052 Sum_probs=41.4
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchH--HHHHHH--HHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLA--EAYSNL--GNVYKERGQLQEALENYRHAVRL 614 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~--~~~~~l--g~~~~~~g~~~~A~~~~~~al~~ 614 (904)
...+...+..++|..|...+.. ....-|... ..+..+ |.-+...-++.+|.+.+++.+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~-----------l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEE-----------LLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHH-----------HHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4556667788999999999988 555423322 234444 44446778899999999988775
No 419
>KOG4014|consensus
Probab=68.70 E-value=98 Score=28.55 Aligned_cols=137 Identities=15% Similarity=0.100 Sum_probs=84.4
Q ss_pred hhCchhHhh-cCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHhhCCC
Q psy17306 544 NVEPDLTRE-GGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYK-----ERGQLQEALENYRHAVRLKPD 617 (904)
Q Consensus 544 ~~l~~~~~~-~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~-----~~g~~~~A~~~~~~al~~~p~ 617 (904)
..+|+.+.. +.+|++|..+|.. --. ....+..-+..|.-+. ..++...|++.|..+-. -+
T Consensus 38 ~lLgdYlEgi~knF~~A~kv~K~-----------nCd-en~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n 103 (248)
T KOG4014|consen 38 QLLGDYLEGIQKNFQAAVKVFKK-----------NCD-ENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--AN 103 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----------ccc-ccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cC
Confidence 566665544 4567777777766 221 1234555566665543 23478899999998776 45
Q ss_pred cHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHH---------------
Q psy17306 618 FIDGYINLAAALVAAG-------DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFN--------------- 675 (904)
Q Consensus 618 ~~~a~~~lg~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~--------------- 675 (904)
.+.+..++|.++..-. +.++|.+++.++-+.. +..+-+.|...|.
T Consensus 104 ~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~-------------~~~aCf~LS~m~~~g~~k~~t~ap~~g~ 170 (248)
T KOG4014|consen 104 IPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE-------------DGEACFLLSTMYMGGKEKFKTNAPGEGK 170 (248)
T ss_pred CHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC-------------CchHHHHHHHHHhccchhhcccCCCCCC
Confidence 6788888888776532 2667888666554433 2233333333332
Q ss_pred ---------hCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy17306 676 ---------AQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLK 709 (904)
Q Consensus 676 ---------~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 709 (904)
...+.++|.++--+|.+++ ++.+-.|+.++|.
T Consensus 171 p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyk 211 (248)
T KOG4014|consen 171 PLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYK 211 (248)
T ss_pred CcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHH
Confidence 3356788888888888774 5677777777774
No 420
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=68.33 E-value=1.9e+02 Score=31.63 Aligned_cols=209 Identities=9% Similarity=0.019 Sum_probs=122.6
Q ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy17306 73 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGN 152 (904)
Q Consensus 73 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 152 (904)
|-+...+..+-.++...-++.-....+.+++... .+..++..++.||... ..++-...|++..+.+-++...-..|+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 3344555555666666666667777788888765 4577899999999988 5677889999999999998888888888
Q ss_pred HHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhc-Cc
Q psy17306 153 LLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ-NP 231 (904)
Q Consensus 153 ~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~ 231 (904)
.|.. ++...+...|......-.--.+..-..+...-+.+ +. .++....+....+.-.. ..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~----------------~i--~dD~D~fl~l~~kiqt~lg~ 201 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE----------------LI--GDDKDFFLRLQKKIQTKLGE 201 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH----------------hc--cccHHHHHHHHHHHHHhhcc
Confidence 8877 66777777661111000000000000000000000 00 00000000000111111 11
Q ss_pred hhHHHHH-HHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHH
Q psy17306 232 LLAEAYS-NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA--------------------AGDMEQAVQA 290 (904)
Q Consensus 232 ~~~~~~~-~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------------------~g~~~~A~~~ 290 (904)
....+.+ .+-.-|....++.+|+..+...++.+..+..+.-.+...+.. -.++.+++.-
T Consensus 202 ~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~d 281 (711)
T COG1747 202 GRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALND 281 (711)
T ss_pred chHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHH
Confidence 1122222 222445567899999999999999888877776666555544 5578888888
Q ss_pred HHHHHhhCCCcc
Q psy17306 291 YVTALQYNPLLK 302 (904)
Q Consensus 291 ~~~al~~~p~~~ 302 (904)
|++.+..+..++
T Consensus 282 Fek~m~f~eGnF 293 (711)
T COG1747 282 FEKLMHFDEGNF 293 (711)
T ss_pred HHHHheeccCce
Confidence 888888777663
No 421
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=67.23 E-value=1.4e+02 Score=29.93 Aligned_cols=137 Identities=17% Similarity=0.080 Sum_probs=78.7
Q ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHhhcCHH-HHHHHHHHHHhcC----
Q psy17306 3 DIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQ-----ETNNTGVLLLLSSIHFQCRKLD-KSAHFSTLAIKQN---- 72 (904)
Q Consensus 3 ~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~---- 72 (904)
++....+.++.-|..+++.|++.-|.++..-.++. .|.+.+....++.+....+.-+ +-..+.+++++-.
T Consensus 5 ky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~ 84 (260)
T PF04190_consen 5 KYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGS 84 (260)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS
T ss_pred cHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCC
Confidence 45566677888888899999999888876655542 3445555567777666554322 3344555555432
Q ss_pred --cccHHHHHHHHHHHHHhCcHHHHHHHHHHHH----------------hcCCCCHHHHHHHHH-HHHHcCCHHHHHHHH
Q psy17306 73 --PLLAEAYSNLGNVYKERGQLQEALENYRHAV----------------RLKPDFIDGYINLAA-ALVAAGDMEQAVQAY 133 (904)
Q Consensus 73 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~al----------------~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~ 133 (904)
-.++..+..+|..+++.|++.+|..+|-..- ...|...+.+...|. .|...++...|...+
T Consensus 85 ~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~ 164 (260)
T PF04190_consen 85 YKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELF 164 (260)
T ss_dssp -TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence 2368899999999999999999888774220 113444444443332 344556666666655
Q ss_pred HHHHhc
Q psy17306 134 VTALQY 139 (904)
Q Consensus 134 ~~al~~ 139 (904)
...++.
T Consensus 165 ~~f~~~ 170 (260)
T PF04190_consen 165 DTFTSK 170 (260)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 422
>KOG1463|consensus
Probab=64.96 E-value=1.7e+02 Score=30.04 Aligned_cols=92 Identities=12% Similarity=0.047 Sum_probs=52.3
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHH--HHHHHHHHHhhCCCcHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE--ALENYRHAVRLKPDFIDG 621 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~--A~~~~~~al~~~p~~~~a 621 (904)
..-|.++....+|..|..+|-++++-- . .+..++.-..++-.+-.|-...+..++ ++-.-+.+++......++
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf----~-s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~A 287 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGF----D-SLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDA 287 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccc----c-ccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHH
Confidence 445666667788888888888722210 0 111122222333333334444555554 444445566666667788
Q ss_pred HHHHHHHHHHc--CCHHHHHH
Q psy17306 622 YINLAAALVAA--GDMEQAVQ 640 (904)
Q Consensus 622 ~~~lg~~~~~~--g~~~~A~~ 640 (904)
.-..+..+... .+|+.|+.
T Consensus 288 mkavAeA~~nRSLkdF~~AL~ 308 (411)
T KOG1463|consen 288 MKAVAEAFGNRSLKDFEKALA 308 (411)
T ss_pred HHHHHHHhcCCcHHHHHHHHH
Confidence 88888887654 36777777
No 423
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=64.61 E-value=31 Score=36.93 Aligned_cols=44 Identities=25% Similarity=0.212 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHH
Q psy17306 58 LDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRH 101 (904)
Q Consensus 58 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 101 (904)
.-+|+.+++.++..+|.|......+..+|...|-...|...|..
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 44677777777777777777777777777777877777777754
No 424
>KOG0128|consensus
Probab=64.26 E-value=2.9e+02 Score=32.31 Aligned_cols=115 Identities=11% Similarity=0.040 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH---HhCcHHHHHHHHH
Q psy17306 24 YESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYK---ERGQLQEALENYR 100 (904)
Q Consensus 24 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~ 100 (904)
-++=+.-++.-+..++.+...+..|..++...|++++-...-..+.++.|.++..|..-..-.. ..++-.++...|+
T Consensus 95 ~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~e 174 (881)
T KOG0128|consen 95 GNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFE 174 (881)
T ss_pred chhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence 3444555666667778888888888889999999888777777777778877777765544332 2366778888888
Q ss_pred HHHhcCCCCHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHhc
Q psy17306 101 HAVRLKPDFIDGYINLAAAL-------VAAGDMEQAVQAYVTALQY 139 (904)
Q Consensus 101 ~al~~~p~~~~~~~~la~~~-------~~~g~~~~A~~~~~~al~~ 139 (904)
+++.-. .++..|...+... ...++++.....|.+++..
T Consensus 175 kal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 175 KALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred HHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhh
Confidence 888643 3344444444333 3456677778888888764
No 425
>KOG2561|consensus
Probab=64.16 E-value=34 Score=35.97 Aligned_cols=104 Identities=14% Similarity=0.040 Sum_probs=67.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHh
Q psy17306 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE----------IWLAIHHFEKAVS 692 (904)
Q Consensus 623 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~----------~~~A~~~~~~al~ 692 (904)
...|.+.+....|++|+..+-.|=+....|..+.++.-.+.+..-..+-|||+.+.+ ...|.+.|.++.-
T Consensus 167 hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~syG 246 (568)
T KOG2561|consen 167 HEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSYG 246 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhhh
Confidence 344555666667777777666665554446666677666767666777888888765 3344444444432
Q ss_pred c---------CcCcHH------HHHHHHHHHHHhcchhHHHHHHHHhhc
Q psy17306 693 L---------DPNFLD------AYINLGNVLKEARIFDRANTLFYVSSY 726 (904)
Q Consensus 693 ~---------~p~~~~------a~~~la~~~~~~g~~~~A~~~~~~a~~ 726 (904)
- .|..|+ .+.--|.+.+.+|+-++|.++|+.+..
T Consensus 247 enl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 247 ENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 2 223322 334458889999999999999998854
No 426
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=64.15 E-value=2.2e+02 Score=31.02 Aligned_cols=29 Identities=14% Similarity=0.043 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhcC
Q psy17306 78 AYSNLGNVYKERGQLQEALENYRHAVRLK 106 (904)
Q Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 106 (904)
....+|..++..|+|+-|...|+.+.+-.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df 238 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDF 238 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 45679999999999999999999987643
No 427
>KOG4151|consensus
Probab=63.83 E-value=22 Score=40.54 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=87.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhChhhHHHhhhcCcc
Q psy17306 589 SNLGNVYKERGQLQEALENYRHAVRLKPD----FIDGYINLAAALVAA--GDMEQAVQAYVTALQYNPSCYLKAIETRPD 662 (904)
Q Consensus 589 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~l~~~p~ 662 (904)
..-|+..+..+++..|.--|..++.+-|. ......+.+.++..+ |+|..++. ...-++...|.
T Consensus 57 ~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~-----------E~~la~~~~p~ 125 (748)
T KOG4151|consen 57 KEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIP-----------ECELALESQPR 125 (748)
T ss_pred HhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcC-----------chhhhhhccch
Confidence 34456677778888888888888887663 344566777777765 58888888 66677788888
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHH
Q psy17306 663 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717 (904)
Q Consensus 663 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 717 (904)
...+++..+.+|...++++-|++...-....+|.++.+..-...++.-....+-+
T Consensus 126 i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~~~d~~ 180 (748)
T KOG4151|consen 126 ISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLELKDLA 180 (748)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcCCc
Confidence 8889999999999999999999998888888999877766555554443333333
No 428
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=63.69 E-value=64 Score=25.09 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchH
Q psy17306 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFA 664 (904)
Q Consensus 623 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~ 664 (904)
...|.-+-..|++++|+.+|.++++ .|..++...|+..
T Consensus 10 ~~~Ave~D~~g~y~eAl~~Y~~aie----~l~~~lk~e~d~~ 47 (77)
T cd02683 10 LKRAVELDQEGRFQEALVCYQEGID----LLMQVLKGTKDEA 47 (77)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH----HHHHHHhhCCCHH
Confidence 3344455567899999998888888 7777777777543
No 429
>KOG2114|consensus
Probab=61.90 E-value=3.2e+02 Score=32.04 Aligned_cols=167 Identities=13% Similarity=0.014 Sum_probs=92.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHhCc
Q psy17306 14 LAHREYQAGDYESAERHCMQLWRQETN-NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQ 91 (904)
Q Consensus 14 ~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~ 91 (904)
.-..+++..-|.-|+.+.+.- ..++. -.+++...|.-++..|++++|...|-+.+.. +|...---+ .....
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf------Ldaq~ 412 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF------LDAQR 412 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh------cCHHH
Confidence 344566777788888776543 22332 2457778899999999999999999998874 443221111 22233
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhH--HHHHHHHHHHcCChHHHHHHHHH
Q psy17306 92 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCV--RSDLGNLLKALGRLDEAKDLYCV 169 (904)
Q Consensus 92 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~la~~~~~~~~~~~A~~~~~~ 169 (904)
..+=..+++...+..-.+.+--..|-.||.++++.++-.+..++. +.-... .-..-.++...+-.++|.-+-..
T Consensus 413 IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~----~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKC----DKGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcC----CCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 334444555555555555555666778999999877655554432 210000 01111233333333333332211
Q ss_pred H----HhhHHHHHHcCCHHHHHHHHh
Q psy17306 170 R----SDLGNLLKALGRLDEAKNLHT 191 (904)
Q Consensus 170 ~----~~l~~~~~~~g~~~~A~~~~~ 191 (904)
. ..+-.++...++|++|+..+.
T Consensus 489 ~~~he~vl~ille~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 489 FKKHEWVLDILLEDLHNYEEALRYIS 514 (933)
T ss_pred hccCHHHHHHHHHHhcCHHHHHHHHh
Confidence 1 112334667778888887775
No 430
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=61.84 E-value=33 Score=30.43 Aligned_cols=52 Identities=15% Similarity=0.032 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhH
Q psy17306 665 VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDR 716 (904)
Q Consensus 665 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 716 (904)
......+......|++.-|.+..+.++..+|++..+..-.+.++..+|.-.+
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 4455666777889999999999999999999999999999999998886543
No 431
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=60.21 E-value=1.2e+02 Score=30.68 Aligned_cols=142 Identities=13% Similarity=0.085 Sum_probs=79.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHH---HHhhcCH----HHHHHHHHHHHhcCcccHHHHHHHHH
Q psy17306 14 LAHREYQAGDYESAERHCMQLWRQETN--NTGVLLLLSSI---HFQCRKL----DKSAHFSTLAIKQNPLLAEAYSNLGN 84 (904)
Q Consensus 14 ~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~---~~~~g~~----~~A~~~~~~al~~~p~~~~~~~~la~ 84 (904)
....++..|+|++=-..+.+......+ ..+..+..+.. .+..... ..-...++.-++..|++..++..+|.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence 456778889998888888887654322 11111222211 1122111 13566777778889988888888888
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHH
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK 164 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 164 (904)
.+....---.....- +.....-+..... -.+.|...+.+++.++|..+.+...+..+-...|..+=-.
T Consensus 86 ~~~~~Aw~~RG~~~A------~~V~~~~W~~~~~------~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~WL~ 153 (277)
T PF13226_consen 86 YWVHRAWDIRGSGYA------STVTEAQWLGAHQ------ACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPDWLA 153 (277)
T ss_pred HHHHHHHHHHccchh------cccCHHHHHHHHH------HHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCchHHH
Confidence 775432110000000 0111222222222 2356778888888888888777777777777777665444
Q ss_pred HHH
Q psy17306 165 DLY 167 (904)
Q Consensus 165 ~~~ 167 (904)
.++
T Consensus 154 ~l~ 156 (277)
T PF13226_consen 154 ALF 156 (277)
T ss_pred HHH
Confidence 443
No 432
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.13 E-value=1.1e+02 Score=26.51 Aligned_cols=84 Identities=8% Similarity=0.105 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CcCcHHHHHHHHHHHHHh
Q psy17306 634 DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL--DPNFLDAYINLGNVLKEA 711 (904)
Q Consensus 634 ~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~ 711 (904)
.-..-...+++++....+ ..-...++.....|...+.... .+.+.|...... .-..+..|...|..+...
T Consensus 41 ~~~~L~~lLer~~~~f~~--~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~ 112 (126)
T PF08311_consen 41 KQSGLLELLERCIRKFKD--DERYKNDERYLKIWIKYADLSS------DPREIFKFLYSKGIGTKLALFYEEWAEFLEKR 112 (126)
T ss_dssp CCHHHHHHHHHHHHHHTT--SGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHhh--hHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHc
Confidence 344445555555552211 0112334444555555554322 777777776664 566788888999999999
Q ss_pred cchhHHHHHHHHhh
Q psy17306 712 RIFDRANTLFYVSS 725 (904)
Q Consensus 712 g~~~~A~~~~~~a~ 725 (904)
|++++|.++|+.++
T Consensus 113 ~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 113 GNFKKADEIYQLGI 126 (126)
T ss_dssp T-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999988753
No 433
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=58.16 E-value=68 Score=31.79 Aligned_cols=130 Identities=10% Similarity=0.042 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh--cCHHHHHHHHHHHHhcCcccHHHHHHHHHHH------HHhCcHHHH
Q psy17306 24 YESAERHCMQLWRQETNNTGVLLLLSSIHFQC--RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY------KERGQLQEA 95 (904)
Q Consensus 24 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~------~~~g~~~~A 95 (904)
++.-+..+..+++.+|.+-.+|...-.++-.. ..+..-+.+.++.++.++.|-..|..+-.+. .....+..-
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 34456677788888888888888777665543 5677778888888888888877776555444 333444555
Q ss_pred HHHHHHHHhcCCCCHHHHHHH---HHHHHHcCC------HHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy17306 96 LENYRHAVRLKPDFIDGYINL---AAALVAAGD------MEQAVQAYVTALQYNPDLYCVRSDLGNL 153 (904)
Q Consensus 96 ~~~~~~al~~~p~~~~~~~~l---a~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~ 153 (904)
.++-..++..++.+..+|... -......|+ +++-+++.-.++-.+|++..+|..+-.+
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~ 236 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGV 236 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHH
Confidence 666667777888888887766 333344454 3455566666666788887777655443
No 434
>KOG0686|consensus
Probab=57.68 E-value=96 Score=32.64 Aligned_cols=110 Identities=16% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc--------CCCCHHH
Q psy17306 44 VLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQLQEALENYRHAVRL--------KPDFIDG 112 (904)
Q Consensus 44 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~ 112 (904)
++..+|.-|...|+++.|++.|.++-.-..+ ....+.++-.+-...|+|..-..+-.++... ..-.+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCChhhHHHHHHHH
Q psy17306 113 YINLAAALVAAGDMEQAVQAYVTALQY--------NPDLYCVRSDLGNL 153 (904)
Q Consensus 113 ~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~ 153 (904)
...-|.+.+.+++|..|.++|-.+..- .|.+..++..+.-+
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcAL 280 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCAL 280 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhh
No 435
>KOG2758|consensus
Probab=57.38 E-value=2.3e+02 Score=28.91 Aligned_cols=68 Identities=9% Similarity=0.044 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 234 AEAYSNLGNVYKER-GQLQEALENYRHAVRLKPD-FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 234 ~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
|..+..++.+..-. .+...+++-+-+++....- ..+.....-.|++-.=+++.|...++++-+.-.++
T Consensus 252 PhllRYLatAvvtnk~~rr~~lkdlvkVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeVl~nD 321 (432)
T KOG2758|consen 252 PHLLRYLATAVVTNKRRRRNRLKDLVKVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEVLVND 321 (432)
T ss_pred HHHHHHHHHHhhcchHhhHHHHHHHHHHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHHHHHhcc
Confidence 55666666665544 5677788888888876321 11222334456666778999988888877665554
No 436
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=57.29 E-value=1.4e+02 Score=26.40 Aligned_cols=119 Identities=14% Similarity=0.137 Sum_probs=69.0
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHH
Q psy17306 18 EYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALE 97 (904)
Q Consensus 18 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 97 (904)
+...+.+...+.+++.++..++.++.....+..+|... +..+.+..++. .++ ..-.-..+.++.+.+-+++++-
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~-~yd~~~~~~~c~~~~l~~~~~~ 90 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSN-HYDIEKVGKLCEKAKLYEEAVE 90 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----ccc-cCCHHHHHHHHHHcCcHHHHHH
Confidence 34467889999999999888888888888888888755 34555566552 111 1111223444455566666666
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy17306 98 NYRHAVRLKPDFIDGYINLAAALVA-AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLK 155 (904)
Q Consensus 98 ~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 155 (904)
.+.+. .....+. .++.. .++++.|++++.+ +.+++.|..++..+.
T Consensus 91 l~~k~----~~~~~Al----~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 91 LYKKD----GNFKDAI----VTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHHhh----cCHHHHH----HHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 66552 1111111 12222 2677778777765 235566666665543
No 437
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=56.95 E-value=2.7e+02 Score=30.96 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 601 LQEALENYRHAVRL-----KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 647 (904)
Q Consensus 601 ~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 647 (904)
-..+++.|.+++.. +-.+...|..+|..+++.+++.+|+..+..+-+
T Consensus 295 r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 295 RPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp S--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777765 334566788889999999999999988776654
No 438
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=56.84 E-value=19 Score=21.49 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=14.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Q psy17306 667 WSNLGCVFNAQGEIWLAIHHFEKAV 691 (904)
Q Consensus 667 ~~~lg~~~~~~g~~~~A~~~~~~al 691 (904)
|..+-.+|.+.|++++|.+.|++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4455555556666666666655544
No 439
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=56.63 E-value=17 Score=22.37 Aligned_cols=24 Identities=25% Similarity=0.052 Sum_probs=11.4
Q ss_pred HHHHHHHHhcchhHHHHHHHHhhc
Q psy17306 703 NLGNVLKEARIFDRANTLFYVSSY 726 (904)
Q Consensus 703 ~la~~~~~~g~~~~A~~~~~~a~~ 726 (904)
.+-..|.+.|++++|.++|.+...
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444555555555555544433
No 440
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=56.14 E-value=18 Score=21.52 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 588 YSNLGNVYKERGQLQEALENYRHAVR 613 (904)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~ 613 (904)
|..+-..|.+.|++++|.+.|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44555556666666666666665543
No 441
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=56.03 E-value=2.2e+02 Score=28.42 Aligned_cols=51 Identities=22% Similarity=0.207 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------hhhHHHHHHHHHHHcCChHHHH
Q psy17306 114 INLAAALVAAGDMEQAVQAYVTALQYNPD--------LYCVRSDLGNLLKALGRLDEAK 164 (904)
Q Consensus 114 ~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~ 164 (904)
..+|.-..+.+++++|+..|.+.+..... ...+...++.+|...|++..-.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~ 65 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLG 65 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHH
Confidence 45566666777888888888877765211 1235567777777777765443
No 442
>KOG1920|consensus
Probab=52.70 E-value=5.3e+02 Score=31.76 Aligned_cols=13 Identities=15% Similarity=0.110 Sum_probs=6.6
Q ss_pred cCCHHHHHHHHHH
Q psy17306 123 AGDMEQAVQAYVT 135 (904)
Q Consensus 123 ~g~~~~A~~~~~~ 135 (904)
+++|+.|+..+..
T Consensus 893 L~ry~~AL~hLs~ 905 (1265)
T KOG1920|consen 893 LKRYEDALSHLSE 905 (1265)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555444
No 443
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=52.51 E-value=24 Score=21.66 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=11.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHH
Q psy17306 667 WSNLGCVFNAQGEIWLAIHHFEKA 690 (904)
Q Consensus 667 ~~~lg~~~~~~g~~~~A~~~~~~a 690 (904)
|..+-.++.+.|+++.|...|+..
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344444444555555555444443
No 444
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=51.72 E-value=63 Score=27.18 Aligned_cols=47 Identities=13% Similarity=0.023 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC
Q psy17306 44 VLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 90 (904)
Q Consensus 44 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 90 (904)
.....|.+.+..|++..|.+.+.++-+..+.....+..-+.+-..+|
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 34445555666666666666666665554444444444444444444
No 445
>KOG0687|consensus
Probab=51.67 E-value=1.2e+02 Score=30.86 Aligned_cols=104 Identities=10% Similarity=0.083 Sum_probs=72.7
Q ss_pred HHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-
Q psy17306 541 YVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI- 619 (904)
Q Consensus 541 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~- 619 (904)
.++...+..|.+.|+-+.|.+.+.+.++++. ++...-+-......+|..|....-..+-++-.+..++...+..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktv-----s~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeR 179 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTV-----SLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWER 179 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHh-----hcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhh
Confidence 5668899999999999999999999666654 2333334455667788888776666666666666666654421
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 620 --DGYINLAAALVAAGDMEQAVQAYVTALQYN 649 (904)
Q Consensus 620 --~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 649 (904)
..-..-|.-.+...++.+|...|-.++...
T Consensus 180 rNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 180 RNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 233445666677788999999877776543
No 446
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=51.45 E-value=30 Score=26.71 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=18.7
Q ss_pred cCCHHHHHHHHHHHHhhChhhHHHhhhcCcc
Q psy17306 632 AGDMEQAVQAYVTALQYNPSCYLKAIETRPD 662 (904)
Q Consensus 632 ~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~ 662 (904)
.|+|++|...|..+++ .|..+++..++
T Consensus 19 ~~~y~eA~~~Y~~~i~----~~~~~~k~e~~ 45 (75)
T cd02677 19 EGDYEAAFEFYRAGVD----LLLKGVQGDSS 45 (75)
T ss_pred HhhHHHHHHHHHHHHH----HHHHHhccCCC
Confidence 3788888888877777 66666655544
No 447
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=51.32 E-value=35 Score=33.09 Aligned_cols=21 Identities=24% Similarity=0.154 Sum_probs=18.4
Q ss_pred HHHcCCHHHHHHHHHHHHhhC
Q psy17306 595 YKERGQLQEALENYRHAVRLK 615 (904)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~~ 615 (904)
.+..|+++.|++...-+|+.+
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~ 113 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHG 113 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcC
Confidence 367799999999999999986
No 448
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=51.15 E-value=31 Score=21.08 Aligned_cols=28 Identities=14% Similarity=0.168 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 666 AWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 666 a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
.|..+-..|.+.|++++|.+.|.+..+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4677888899999999999999988764
No 449
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=50.28 E-value=1.1e+02 Score=23.08 Aligned_cols=37 Identities=24% Similarity=0.449 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcc
Q psy17306 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD 662 (904)
Q Consensus 622 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~ 662 (904)
+...|.-.-..|++++|+..|.++++ .+..++...++
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~----~l~~~~~~~~~ 44 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIE----YLMQALKSESN 44 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH----HHHHHHHHSTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH----HHHHHhccCCC
Confidence 34455555667888888888888887 66666665543
No 450
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=49.82 E-value=60 Score=25.18 Aligned_cols=15 Identities=7% Similarity=0.089 Sum_probs=6.6
Q ss_pred hcchhHHHHHHHHhh
Q psy17306 711 ARIFDRANTLFYVSS 725 (904)
Q Consensus 711 ~g~~~~A~~~~~~a~ 725 (904)
.|++++|+.+|..++
T Consensus 19 ~g~y~eA~~~Y~~ai 33 (76)
T cd02681 19 EGRYSEAVFYYKEAA 33 (76)
T ss_pred ccCHHHHHHHHHHHH
Confidence 344444444444443
No 451
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=49.72 E-value=1.7e+02 Score=25.12 Aligned_cols=69 Identities=17% Similarity=0.149 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCc-----chHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy17306 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP-----DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692 (904)
Q Consensus 623 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 692 (904)
..+|....+.+++-.++-.|++|+.+..+.. ..-+..- -......+||..+..+|+.+-.+++++-|-+
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~-~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEID-ESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhc-ccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 4455555666666666666666555322110 0000000 1134567899999999999988888875544
No 452
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=49.31 E-value=69 Score=24.15 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 667 WSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 667 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
+...|.-+-..|++++|+.+|.++++.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344455555677777777777766654
No 453
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=48.69 E-value=2.2e+02 Score=28.49 Aligned_cols=158 Identities=11% Similarity=-0.010 Sum_probs=0.0
Q ss_pred hcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchH
Q psy17306 506 RNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLA 585 (904)
Q Consensus 506 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~ 585 (904)
..+..+..+.-+...+.-..+.+..... ++.++|..|.+.++.+.+.+...+.+..+. .....-+-.
T Consensus 89 kkneeki~Elde~i~~~eedngE~e~~e--------a~~n~aeyY~qi~D~~ng~~~~~~~~~~a~-----stg~KiDv~ 155 (412)
T COG5187 89 KKNEEKIEELDERIREKEEDNGETEGSE--------ADRNIAEYYCQIMDIQNGFEWMRRLMRDAM-----STGLKIDVF 155 (412)
T ss_pred HhhHHHHHHHHHHHHHHhhcccchHHHH--------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-----hcccchhhH
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcc
Q psy17306 586 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID---GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD 662 (904)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~ 662 (904)
-....+|.+|..+.=.++.++.....++...+... .-...|...+...++.+|-..+..++ .--...++-|-
T Consensus 156 l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l-----~tF~S~El~sY 230 (412)
T COG5187 156 LCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDIL-----PTFESSELISY 230 (412)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHh-----ccccccccccH
Q ss_pred hHHHHHHHHHHHHhCCCHH
Q psy17306 663 FAVAWSNLGCVFNAQGEIW 681 (904)
Q Consensus 663 ~~~a~~~lg~~~~~~g~~~ 681 (904)
...+-+..-.-.....+.+
T Consensus 231 ~~~vrYa~~~Gl~~leR~d 249 (412)
T COG5187 231 SRAVRYAIFCGLLRLERRD 249 (412)
T ss_pred HHHHHHHHHhhhheeehhh
No 454
>KOG4151|consensus
Probab=48.40 E-value=54 Score=37.55 Aligned_cols=101 Identities=20% Similarity=0.219 Sum_probs=67.6
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHH--hCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy17306 48 LSSIHFQCRKLDKSAHFSTLAIKQNPL----LAEAYSNLGNVYKE--RGQLQEALENYRHAVRLKPDFIDGYINLAAALV 121 (904)
Q Consensus 48 la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 121 (904)
-++..+..+++..|.--|..++.+-|. .+....+.+.++.. .|+|..++.-..-++...|....++...+.+|.
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~ 138 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYE 138 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHH
Confidence 455666677777776666666666552 33444555555544 357777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHhcCCChhhHHH
Q psy17306 122 AAGDMEQAVQAYVTALQYNPDLYCVRS 148 (904)
Q Consensus 122 ~~g~~~~A~~~~~~al~~~p~~~~~~~ 148 (904)
..+..+-|++.+.-....+|.+..+..
T Consensus 139 al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 139 ALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 777777777776666777777654433
No 455
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=48.00 E-value=2.9e+02 Score=27.38 Aligned_cols=173 Identities=13% Similarity=0.011 Sum_probs=0.0
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHh-CC--chHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCc
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQ-NP--LLAEAYSNLGNVYKER-GQLQEALENYRHAVRLKPDF 618 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~-~p--~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~ 618 (904)
...++.+..+.++|++.+.+..+ +++. +| -+.+=...+..+|... |....+.......-+.....
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~-----------~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~ 72 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEK-----------VAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESR 72 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhcc
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHH----------HHHHHHH
Q psy17306 619 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW----------LAIHHFE 688 (904)
Q Consensus 619 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~----------~A~~~~~ 688 (904)
......-..--++..=-++-.......+++-.+.+.............+-..|..|.-.-.+. +|...|+
T Consensus 73 ~~~~~~~~~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~ 152 (244)
T smart00101 73 GNEDHVASIKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYK 152 (244)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Q ss_pred HHHhc--------CcCcHHHHHHHHHHHHHh-cchhHHHHHHHHhhc
Q psy17306 689 KAVSL--------DPNFLDAYINLGNVLKEA-RIFDRANTLFYVSSY 726 (904)
Q Consensus 689 ~al~~--------~p~~~~a~~~la~~~~~~-g~~~~A~~~~~~a~~ 726 (904)
+|+++ +|-.-....|.+..|... ++.++|.++-+++.+
T Consensus 153 ~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 153 SAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 456
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=47.29 E-value=3.3e+02 Score=30.89 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=55.6
Q ss_pred hhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHh
Q psy17306 657 IETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVS 724 (904)
Q Consensus 657 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 724 (904)
+......+...+..+..+...+..++|-++|++.+..+|+ .+++..+.-+.+.|-...|...+.+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (578)
T PRK15490 35 LPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILKKV 100 (578)
T ss_pred CCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHHHh
Confidence 3444455667777888888899999999999999999998 78889999999999999999998743
No 457
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=46.99 E-value=1.9e+02 Score=30.87 Aligned_cols=47 Identities=19% Similarity=0.180 Sum_probs=42.5
Q ss_pred CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17306 90 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 136 (904)
Q Consensus 90 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 136 (904)
+..-+|+..++.++...|.+......+..+|..+|-.+.|...|...
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 34568999999999999999999999999999999999999999754
No 458
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=46.86 E-value=48 Score=28.43 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=21.8
Q ss_pred HHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHH
Q psy17306 703 NLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILER 740 (904)
Q Consensus 703 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 740 (904)
.+|..+...|++++|..+|-+|+...+++.++..++.+
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q~ 105 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQK 105 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 45555566666666666666666666666555554443
No 459
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=46.58 E-value=2e+02 Score=25.15 Aligned_cols=64 Identities=14% Similarity=0.102 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296 (904)
Q Consensus 233 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 296 (904)
..+....--.++..+|+-++--+.+....+.+..++..+..+|.+|.+.|+..+|-+.+.+|.+
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
No 460
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=45.87 E-value=3.2e+02 Score=27.34 Aligned_cols=151 Identities=11% Similarity=0.039 Sum_probs=95.4
Q ss_pred HHHhCCchHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q psy17306 577 AIKQNPLLAEAYSNLGNVYKE--------RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA--GDMEQAVQAYVTAL 646 (904)
Q Consensus 577 al~~~p~~~~~~~~lg~~~~~--------~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--g~~~~A~~~~~~al 646 (904)
.+..+|..-.+|...-.+... ..-.+.-+.....+++-+|.+-..|...-.++... .++..-..
T Consensus 58 lid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~------ 131 (328)
T COG5536 58 LIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELF------ 131 (328)
T ss_pred HHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHH------
Confidence 677788877777766655544 12245667778888899999999998888877665 44555444
Q ss_pred hhChhhHHHhhhcCcchHHHHHHHHHHH------HhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH---HHhcc----
Q psy17306 647 QYNPSCYLKAIETRPDFAVAWSNLGCVF------NAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL---KEARI---- 713 (904)
Q Consensus 647 ~~~~~~~~~~l~~~p~~~~a~~~lg~~~------~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~---~~~g~---- 713 (904)
...+.++.+|.+-..|...-++. ..-..+..-.++-..++..|+.|..||.+.-... ...|+
T Consensus 132 -----itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visq 206 (328)
T COG5536 132 -----ITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQ 206 (328)
T ss_pred -----HHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchH
Confidence 55666777888777776665555 2233344456666677777999999988873332 22332
Q ss_pred --hhHHHHHHHHhhcccCChhhHHHHH
Q psy17306 714 --FDRANTLFYVSSYFMITDEDIDVIL 738 (904)
Q Consensus 714 --~~~A~~~~~~a~~~~~~~~~~~~~l 738 (904)
+++-+++.-.+.-..|++..+-..+
T Consensus 207 k~l~~eL~~i~~~if~~p~~~S~w~y~ 233 (328)
T COG5536 207 KYLEKELEYIFDKIFTDPDNQSVWGYL 233 (328)
T ss_pred HHHHHHHHHHHhhhhcCccccchhhHH
Confidence 3344444444444555554444333
No 461
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=45.37 E-value=53 Score=25.44 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWR 36 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~ 36 (904)
...|..+...|..+=..|+|++|+.+|..+++
T Consensus 3 e~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 3 ERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34566777888888888888888888887754
No 462
>KOG4014|consensus
Probab=44.59 E-value=2.6e+02 Score=25.93 Aligned_cols=54 Identities=17% Similarity=0.065 Sum_probs=37.5
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhC
Q psy17306 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA----GDMEQAVQAYVTALQYN 298 (904)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~ 298 (904)
.+.-..+.+.|.++--++-+++ ++.+.-++.+.|..- ++-++|..+-.++.++.
T Consensus 177 ~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 177 LGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred hhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 3444578889999888888774 566667777776532 35677877777777654
No 463
>KOG0687|consensus
Probab=43.27 E-value=3.9e+02 Score=27.50 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Q psy17306 76 AEAYSNLGNVYKERGQLQEALENYRHAVR 104 (904)
Q Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 104 (904)
.+++...|..|.+.|+-+.|++.+.+..+
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ 132 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYE 132 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44555555555555555555555554443
No 464
>KOG4322|consensus
Probab=42.97 E-value=2.6e+02 Score=29.87 Aligned_cols=159 Identities=17% Similarity=0.014 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc--
Q psy17306 3 DIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETN------NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL-- 74 (904)
Q Consensus 3 ~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 74 (904)
|..+-.+++++.|.++....++..|...+++++-.... -..++..++.++.+.+..-.+..+.-.++.....
T Consensus 268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ 347 (482)
T KOG4322|consen 268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYS 347 (482)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhc
Q ss_pred ----cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc-------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 75 ----LAEAYSNLGNVYKERGQLQEALENYRHAVRL-------------KPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 137 (904)
Q Consensus 75 ----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 137 (904)
.+.+-..++..+...|..+.|+..+..++.. .--.+.++..-+..+ ...+.+.+...++++-
T Consensus 348 ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~~A~ 426 (482)
T KOG4322|consen 348 LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLDLAQ 426 (482)
T ss_pred cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHHHHH
Q ss_pred hc------CCChhhHHHHHHHHHHHcCChHH
Q psy17306 138 QY------NPDLYCVRSDLGNLLKALGRLDE 162 (904)
Q Consensus 138 ~~------~p~~~~~~~~la~~~~~~~~~~~ 162 (904)
.. ...-.++.+.++..|-..|+.++
T Consensus 427 ~~f~kL~~he~ildv~yf~A~~yn~lGd~~e 457 (482)
T KOG4322|consen 427 SIFYKLGCHEKILDVTYFSAYQYNHLGDSPE 457 (482)
T ss_pred HHHHHccchHHHHHHHHHHHHHHHhhcCchH
No 465
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=42.56 E-value=2.4e+02 Score=28.57 Aligned_cols=75 Identities=11% Similarity=-0.040 Sum_probs=44.4
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhcCcc--cHHHHHHHHHHH---HHhCc----HHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy17306 49 SSIHFQCRKLDKSAHFSTLAIKQNPL--LAEAYSNLGNVY---KERGQ----LQEALENYRHAVRLKPDFIDGYINLAAA 119 (904)
Q Consensus 49 a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~---~~~g~----~~~A~~~~~~al~~~p~~~~~~~~la~~ 119 (904)
...++..++|++=...+.+......+ ..+..+..+... ..... ...-...++.-++..|++..++..+|.+
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 34567788898888888877653221 111112222111 11111 1245666777778899999999988888
Q ss_pred HHHc
Q psy17306 120 LVAA 123 (904)
Q Consensus 120 ~~~~ 123 (904)
+...
T Consensus 87 ~~~~ 90 (277)
T PF13226_consen 87 WVHR 90 (277)
T ss_pred HHHH
Confidence 7653
No 466
>KOG4521|consensus
Probab=41.91 E-value=7.6e+02 Score=30.46 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhc
Q psy17306 76 AEAYSNLGNVYKERGQLQEALENYRHAVRL 105 (904)
Q Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 105 (904)
+...+++|.+|...|...+|+.+|.+|..-
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg 949 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSG 949 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhc
Confidence 456788899999999999999999988754
No 467
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=41.46 E-value=86 Score=29.78 Aligned_cols=51 Identities=31% Similarity=0.311 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 250 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 250 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
.+..+...++.+...|+ +.++..++.++...|+.++|.....++....|..
T Consensus 127 l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 34455666666777775 7888889999999999999999999999999954
No 468
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=40.92 E-value=1e+02 Score=26.27 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWR 36 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~ 36 (904)
+..+|...++.+++-.++-.|++++.
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls 29 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALS 29 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 45566677777777777777777654
No 469
>PF05979 DUF896: Bacterial protein of unknown function (DUF896); InterPro: IPR009242 This family consists of several short, hypothetical bacterial proteins of unknown function. They may be involved in the bacterial SOS response [].; PDB: 2HEP_A 3BHP_C 2JVD_A.
Probab=40.88 E-value=19 Score=26.60 Aligned_cols=25 Identities=48% Similarity=0.486 Sum_probs=16.1
Q ss_pred HHhhhhccCCCCHHHHHHHHHHhhc
Q psy17306 879 EQKKIDESEPLTEEELAEKEELLTQ 903 (904)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (904)
+..+...++.||+||.+|..+|=.+
T Consensus 9 eLa~K~K~~gLT~eE~~Eq~~LR~e 33 (65)
T PF05979_consen 9 ELAKKSKEEGLTEEEKAEQAELRQE 33 (65)
T ss_dssp HHHHHHHTT---HHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHH
Confidence 3445556899999999999888544
No 470
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=40.46 E-value=53 Score=25.35 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Q psy17306 57 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR 104 (904)
Q Consensus 57 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 104 (904)
+.++|+.++.+++..+.. |+|++|+.+|..+++
T Consensus 2 ~l~kai~Lv~~A~~eD~~---------------gny~eA~~lY~~ale 34 (75)
T cd02680 2 DLERAHFLVTQAFDEDEK---------------GNAEEAIELYTEAVE 34 (75)
T ss_pred CHHHHHHHHHHHHHhhHh---------------hhHHHHHHHHHHHHH
No 471
>KOG1497|consensus
Probab=40.40 E-value=3.5e+02 Score=27.67 Aligned_cols=100 Identities=11% Similarity=0.037 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc---
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETN-------NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL--- 74 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--- 74 (904)
.+.+...+.+|.+|-..++|..|...+.-+-..... ....+..+|.+|+..++..+|..+..++--.-.+
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N 179 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN 179 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Q ss_pred ---cHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Q psy17306 75 ---LAEAYSNLGNVYKERGQLQEALENYRHAVR 104 (904)
Q Consensus 75 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 104 (904)
....-...|+++-..++|-+|...|-+...
T Consensus 180 e~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=40.09 E-value=72 Score=24.66 Aligned_cols=34 Identities=26% Similarity=0.256 Sum_probs=23.0
Q ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 3 DIAQLGIGLLELAHREYQAGDYESAERHCMQLWR 36 (904)
Q Consensus 3 ~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~ 36 (904)
++-..+..++..|..+-..|++++|+.+|.++++
T Consensus 3 ~~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 3 DYLSKAKELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344566677777777777777777777776643
No 473
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=39.84 E-value=1.8e+02 Score=22.69 Aligned_cols=38 Identities=11% Similarity=-0.072 Sum_probs=26.9
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLA 585 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~ 585 (904)
...|.-.-..|++++|+.+|.+ ++..+..++...|+..
T Consensus 10 ~~~Ave~D~~g~y~eAl~~Y~~----aie~l~~~lk~e~d~~ 47 (77)
T cd02683 10 LKRAVELDQEGRFQEALVCYQE----GIDLLMQVLKGTKDEA 47 (77)
T ss_pred HHHHHHHHHhccHHHHHHHHHH----HHHHHHHHHhhCCCHH
Confidence 4555667778999999999988 5555555666666543
No 474
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=39.77 E-value=62 Score=20.05 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhC----CCHHHHHHHHHHHHhc
Q psy17306 666 AWSNLGCVFNAQ----GEIWLAIHHFEKAVSL 693 (904)
Q Consensus 666 a~~~lg~~~~~~----g~~~~A~~~~~~al~~ 693 (904)
+.+.||.+|..- .+..+|+.+|+++.+.
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 456666666532 2667777777776543
No 475
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=39.06 E-value=2.2e+02 Score=24.72 Aligned_cols=60 Identities=13% Similarity=0.235 Sum_probs=44.5
Q ss_pred hcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CcCcHHHHHHHHHHHHHhcchhHHHHHHHH
Q psy17306 658 ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL--DPNFLDAYINLGNVLKEARIFDRANTLFYV 723 (904)
Q Consensus 658 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~~~~ 723 (904)
..+|.....|...+... + ++.+.|.-.... .-..+..|...|..+...|++.+|.++|+.
T Consensus 63 knD~RyLkiWi~ya~~~---~---dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 63 KNDPRYLKIWLKYADNC---D---EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred cCCHHHHHHHHHHHHhc---C---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 45677777787777653 3 355666666554 455677788889999999999999999974
No 476
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=38.26 E-value=6.9e+02 Score=28.99 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhc
Q psy17306 146 VRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTEN 193 (904)
Q Consensus 146 ~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 193 (904)
+....|.-....|++++|+.+| .-.|+++.++.+..+.
T Consensus 416 i~~~~A~~~e~~g~~~dAi~Ly----------~La~~~d~vl~lln~~ 453 (613)
T PF04097_consen 416 IIEQAAREAEERGRFEDAILLY----------HLAEEYDKVLSLLNRL 453 (613)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHH----------HHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHH----------HHHhhHHHHHHHHHHH
Confidence 4445566667778888777665 4556777777777643
No 477
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=38.09 E-value=1.9e+02 Score=22.33 Aligned_cols=34 Identities=32% Similarity=0.463 Sum_probs=25.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcc
Q psy17306 625 LAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD 662 (904)
Q Consensus 625 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~ 662 (904)
.|.-+-..|++++|+.+|.++++ .+.+++...|+
T Consensus 14 ~Av~~d~~g~~~eAl~~Y~~a~e----~l~~~~~~~~~ 47 (77)
T smart00745 14 KALKADEAGDYEEALELYKKAIE----YLLEGIKVESD 47 (77)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH----HHHHHhccCCC
Confidence 34445557899999999998888 77777776665
No 478
>KOG2063|consensus
Probab=37.64 E-value=8.1e+02 Score=29.57 Aligned_cols=113 Identities=10% Similarity=-0.005 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHhCcH--HHHHHHHHHHHhcCCCCHH------
Q psy17306 44 VLLLLSSIHFQCRKLDKSAHFSTLAIKQ----NPLLAEAYSNLGNVYKERGQL--QEALENYRHAVRLKPDFID------ 111 (904)
Q Consensus 44 ~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~------ 111 (904)
-+..|+.+|...|+.++|++++.....- ++.....+-..-..+-..+.. +-..++-.-.+..+|....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 3567888899999999999999988873 333333333433334444443 4455555555555543211
Q ss_pred -----HHHHH--HHHHHHcCCHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHH
Q psy17306 112 -----GYINL--AAALVAAGDMEQAVQAYVTALQYNPD-LYCVRSDLGNLLKA 156 (904)
Q Consensus 112 -----~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 156 (904)
.-+.. -.-|......+-++.+++.++..+.. +...+..++..|..
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 00111 12244566777888888888876554 34455555555543
No 479
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=37.63 E-value=74 Score=20.21 Aligned_cols=13 Identities=31% Similarity=0.276 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHh
Q psy17306 680 IWLAIHHFEKAVS 692 (904)
Q Consensus 680 ~~~A~~~~~~al~ 692 (904)
.++|+.+|++|.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 5566666665544
No 480
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=37.60 E-value=4.8e+02 Score=26.91 Aligned_cols=151 Identities=17% Similarity=0.074 Sum_probs=88.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHH----hcCcccHHHHHHHHHHHHHhCc
Q psy17306 16 HREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAI----KQNPLLAEAYSNLGNVYKERGQ 91 (904)
Q Consensus 16 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~g~ 91 (904)
...+..+++.+.++..++.+...|-..+..+..+.+..+.|. +.+.......+ ..-|.-.. +.+..|-
T Consensus 107 ~~~~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~~el~~fL~RlP~L~~-------L~F~DGt 178 (301)
T TIGR03362 107 QELLAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIRDELAAFLERLPGLLE-------LKFSDGT 178 (301)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCcChhh-------cccCCCC
Confidence 344477888999999999999999999999999999999994 55444443332 22232110 0000010
Q ss_pred H---HHHHHHHHHHHh-----------cCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---hhhHHHHHHH
Q psy17306 92 L---QEALENYRHAVR-----------LKP--DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD---LYCVRSDLGN 152 (904)
Q Consensus 92 ~---~~A~~~~~~al~-----------~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~ 152 (904)
. ++....+..... ..+ ........-+..+...|..+.|+..++..+...++ .......+++
T Consensus 179 PFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~ 258 (301)
T TIGR03362 179 PFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLAR 258 (301)
T ss_pred CCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHH
Confidence 0 011111111000 001 11222233466777888999999998876553322 2345667888
Q ss_pred HHHHcCChHHHHHHHHHHHhhH
Q psy17306 153 LLKALGRLDEAKDLYCVRSDLG 174 (904)
Q Consensus 153 ~~~~~~~~~~A~~~~~~~~~l~ 174 (904)
++...|..+-|...+..+...+
T Consensus 259 l~~~~g~~~lA~~ll~~L~~~~ 280 (301)
T TIGR03362 259 LLEQAGKAELAQQLYAALDQQI 280 (301)
T ss_pred HHHHcCCHHHHHHHHHHHHHHH
Confidence 8889999999988885544443
No 481
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=37.57 E-value=2.7e+02 Score=31.53 Aligned_cols=78 Identities=13% Similarity=0.023 Sum_probs=34.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHH
Q psy17306 21 AGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYR 100 (904)
Q Consensus 21 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 100 (904)
....+.+....+.-+......+...+..+..+...|..++|-.+|++.+..+|+ ..++..+.-+.+.|-...|...++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 334444444444433333333444444444444444455555555555444444 334444444444444444444443
No 482
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=37.54 E-value=1.8e+02 Score=26.38 Aligned_cols=102 Identities=17% Similarity=-0.008 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhc--------------------------------CcchHHHHHHH
Q psy17306 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIET--------------------------------RPDFAVAWSNL 670 (904)
Q Consensus 623 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~--------------------------------~p~~~~a~~~l 670 (904)
...+......|+.++|...+.++..... .+... ...........
T Consensus 6 i~~Ar~aL~~g~~~~A~~~L~~A~~~l~----~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~ 81 (155)
T PF10938_consen 6 IQKARLALFQGDTDEAKKLLEDAQGKLD----AARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKT 81 (155)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHHT----S-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH----HHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHH
Confidence 4556666777888888887777665321 11111 11224456777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhc-------CcC-cHHHHHHHHHHHHHhcchhHHHHHHHHhhccc
Q psy17306 671 GCVFNAQGEIWLAIHHFEKAVSL-------DPN-FLDAYINLGNVLKEARIFDRANTLFYVSSYFM 728 (904)
Q Consensus 671 g~~~~~~g~~~~A~~~~~~al~~-------~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~ 728 (904)
+.-..+.|+...|.+.++-+-.- -|- ........+..+...|++.+|...+..+++..
T Consensus 82 a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~~l 147 (155)
T PF10938_consen 82 ANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALDGL 147 (155)
T ss_dssp HHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-
T ss_pred HHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhcCe
Confidence 88889999999999998866432 122 23456678888999999999999999887643
No 483
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=36.73 E-value=74 Score=24.60 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWR 36 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~ 36 (904)
...+..++..|...-..|+|++|...|..++.
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34556677777777777777777777777654
No 484
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=35.98 E-value=60 Score=31.56 Aligned_cols=93 Identities=20% Similarity=0.212 Sum_probs=50.6
Q ss_pred HHHhhcCHHHHHHHHHHHHhcC---ccc---------HHHHHHHHHHHHHhCcHHH--HHHHHHHHHhc--CCCCHH--H
Q psy17306 51 IHFQCRKLDKSAHFSTLAIKQN---PLL---------AEAYSNLGNVYKERGQLQE--ALENYRHAVRL--KPDFID--G 112 (904)
Q Consensus 51 ~~~~~g~~~~A~~~~~~al~~~---p~~---------~~~~~~la~~~~~~g~~~~--A~~~~~~al~~--~p~~~~--~ 112 (904)
-.+..|+++.|+++.+-+|+.+ |+. ++-...-+......|..-+ -...+..+... -|+... .
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl 171 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKL 171 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHH
Confidence 3567788888888888888753 211 1112222333334443211 11222222211 234333 4
Q ss_pred HHHHHHHHH---------HcCCHHHHHHHHHHHHhcCCCh
Q psy17306 113 YINLAAALV---------AAGDMEQAVQAYVTALQYNPDL 143 (904)
Q Consensus 113 ~~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~ 143 (904)
+-..|..+. ..++...|+.++++|++++|+.
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 555666663 4467889999999999999875
No 485
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=35.67 E-value=4.7e+02 Score=27.28 Aligned_cols=112 Identities=15% Similarity=0.177 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
.+..+...-..+...|+...|..+-.+. .-.+-..|+.....+...++|++-..+... ...|-.|--...++
T Consensus 176 ~~~Sl~~Ti~~li~~~~~k~A~kl~k~F---kv~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 176 VGLSLNDTIRKLIEMGQEKQAEKLKKEF---KVPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEAC 247 (319)
T ss_pred hcCCHHHHHHHHHHCCCHHHHHHHHHHc---CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHH
Q ss_pred HHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17306 87 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 135 (904)
...|+..+|..+..+ ... ......|...|++.+|.+..-+
T Consensus 248 ~~~~~~~eA~~yI~k-------~~~--~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK-------IPD--EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHh-------CCh--HHHHHHHHHCCCHHHHHHHHHH
No 486
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.23 E-value=3e+02 Score=23.90 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 94 EALENYRHAVRL--KPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 137 (904)
Q Consensus 94 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 137 (904)
.+...|..+... .-..+..|...|..+...|++++|.++|+.++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 677777766653 45667778888888888888888888887764
No 487
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=35.00 E-value=1.2e+02 Score=28.78 Aligned_cols=50 Identities=32% Similarity=0.349 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy17306 92 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD 142 (904)
Q Consensus 92 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 142 (904)
.+..++..++.+...|+ +..+..++.++...|+.++|.....++....|.
T Consensus 127 l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34555666777777775 788888999999999999999999999999993
No 488
>PF15337 Vasculin: Vascular protein family Vasculin-like 1
Probab=34.95 E-value=25 Score=27.79 Aligned_cols=13 Identities=54% Similarity=0.669 Sum_probs=11.0
Q ss_pred ccCCCCHHHHHHH
Q psy17306 885 ESEPLTEEELAEK 897 (904)
Q Consensus 885 ~~~~~~~~~~~~~ 897 (904)
|+.||||+|.+|=
T Consensus 30 ~~~PlTEDElkEF 42 (97)
T PF15337_consen 30 NCLPLTEDELKEF 42 (97)
T ss_pred ccCcCcHHHHHHH
Confidence 5999999998873
No 489
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=34.93 E-value=3.5e+02 Score=24.58 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWR 36 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~ 36 (904)
......|+..+..|+.++|...+.++..
T Consensus 3 ~~~i~~Ar~aL~~g~~~~A~~~L~~A~~ 30 (155)
T PF10938_consen 3 MRDIQKARLALFQGDTDEAKKLLEDAQG 30 (155)
T ss_dssp HHHHHHHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456778888888888888888888743
No 490
>KOG2758|consensus
Probab=34.59 E-value=5.2e+02 Score=26.48 Aligned_cols=195 Identities=13% Similarity=0.083 Sum_probs=105.7
Q ss_pred HHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCc--hHHHHHHHHH
Q psy17306 516 LLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPL--LAEAYSNLGN 593 (904)
Q Consensus 516 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~--~~~~~~~lg~ 593 (904)
++...+-....|+..+.. +..+...+..|+|..|..++-. + .++-.+|+ ...++...-.
T Consensus 115 l~~L~e~ynf~~e~i~~l----------ykyakfqyeCGNY~gAs~yLY~--------~-r~l~~~~d~n~lsalwGKlA 175 (432)
T KOG2758|consen 115 LQHLQEHYNFTPERIETL----------YKYAKFQYECGNYSGASDYLYF--------Y-RALVSDPDRNYLSALWGKLA 175 (432)
T ss_pred HHHHHHhcCCCHHHHHHH----------HHHHHHHHhccCcccHHHHHHH--------H-HHhcCCcchhhHHHHHHHHH
Confidence 333344445555555555 8889999999999999876543 0 03333332 3344433333
Q ss_pred HHHHcCCHHHHHHHHHHHHhh---CCCc--HHHHHHHHHHH----HHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchH
Q psy17306 594 VYKERGQLQEALENYRHAVRL---KPDF--IDGYINLAAAL----VAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFA 664 (904)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~---~p~~--~~a~~~lg~~~----~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~ 664 (904)
.-.-..+|+.|.+.+.+.-+. ++-+ ...+.+..++. +-.=++.++...+-.++-..|- |..++. ...|
T Consensus 176 SEIL~qnWd~A~edL~rLre~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~-YLNaIQ--t~cP 252 (432)
T KOG2758|consen 176 SEILTQNWDGALEDLTRLREYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPP-YLNAIQ--TSCP 252 (432)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHH-HHHHHH--hhCH
Confidence 344557899999998887654 2211 22222222221 1111222222222222222221 222222 2234
Q ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHhcCcC-cHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChh
Q psy17306 665 VAWSNLGCVFNAQ-GEIWLAIHHFEKAVSLDPN-FLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDE 732 (904)
Q Consensus 665 ~a~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 732 (904)
..+..|+.+-.-. .+...+++.+-|+++.... ..+.....-.|+.-.=+++.|...+++.-+...+|-
T Consensus 253 hllRYLatAvvtnk~~rr~~lkdlvkVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeVl~nDf 322 (432)
T KOG2758|consen 253 HLLRYLATAVVTNKRRRRNRLKDLVKVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEVLVNDF 322 (432)
T ss_pred HHHHHHHHHhhcchHhhHHHHHHHHHHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHHHHHhcch
Confidence 5566666665554 6778899999999988321 122223334455566789999999998877766553
No 491
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=34.21 E-value=95 Score=19.35 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy17306 600 QLQEALENYRHAVRLKPDFIDGYINLAA 627 (904)
Q Consensus 600 ~~~~A~~~~~~al~~~p~~~~a~~~lg~ 627 (904)
.++.|...|++.+..+|+ +..|...|.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 578899999999999877 566666554
No 492
>PRK12798 chemotaxis protein; Reviewed
Probab=33.91 E-value=6.3e+02 Score=27.20 Aligned_cols=199 Identities=18% Similarity=0.079 Sum_probs=105.2
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc-CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCChh---hHHHH
Q psy17306 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRL-KPDFIDGYINLAA-ALVAAGDMEQAVQAYVTALQYNPDLY---CVRSD 149 (904)
Q Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~ 149 (904)
+.+.-..-|..-+-.|+-.+|.+.+..+-.. .|.....++.|.. ......+...|++.|+.+--.-|... .++..
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRR 190 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRR 190 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 3445555666666778888877777654322 1222333433333 23345677888888888877777652 23333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchh-hHHHHHHhhcCCCcchHHHhhHHHHHh-
Q psy17306 150 LGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMK-VQNAIVCNYGGRKPTTLESAHFSTLAI- 227 (904)
Q Consensus 150 la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~- 227 (904)
-..+....|+.++...+-. .++++........ +...+............ ...+...+
T Consensus 191 si~la~~~g~~~rf~~la~-------------------~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~--~~~l~~~ls 249 (421)
T PRK12798 191 SLFIAAQLGDADKFEALAR-------------------NYLRRFRHSPYASQFAQRFVDLVVRLDDEIR--DARLVEILS 249 (421)
T ss_pred hhHHHHhcCcHHHHHHHHH-------------------HHHHHhccCchHHHHHHHHHHHHHhcccccc--HHHHHHHHH
Confidence 3444466777776655441 1111111111100 00000000000000000 00011222
Q ss_pred hcCc-hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17306 228 KQNP-LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP----DFIDGYINLAAALVAAGDMEQAVQAYVTA 294 (904)
Q Consensus 228 ~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~a 294 (904)
..+| .....|..+++.-.-.|+.+-|.-.-++++.+.. +...+.+..+....-..++++|+..+..+
T Consensus 250 ~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 250 FMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred hcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 2233 3356888899999999999999999999998752 23445555566666667777777666553
No 493
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=33.51 E-value=6.2e+02 Score=27.03 Aligned_cols=55 Identities=11% Similarity=-0.095 Sum_probs=40.2
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHhcCCCC-----HHHHHH--HHHHHHHcCCHHHHHHHHHH
Q psy17306 81 NLGNVYKERGQLQEALENYRHAVRLKPDF-----IDGYIN--LAAALVAAGDMEQAVQAYVT 135 (904)
Q Consensus 81 ~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~--la~~~~~~g~~~~A~~~~~~ 135 (904)
..+.-++..++|..|...|..++...+.. ...+.. .|..+|..-++++|.+.+++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 35557788999999999999999875421 223333 44555778899999999986
No 494
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=33.14 E-value=2.2e+02 Score=21.79 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=24.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcc
Q psy17306 625 LAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD 662 (904)
Q Consensus 625 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~ 662 (904)
.|.-.-..|++++|+.+|..+++ .+..++...|+
T Consensus 12 ~Av~~D~~g~~~~Al~~Y~~a~e----~l~~~~~~~~~ 45 (75)
T cd02656 12 QAVKEDEDGNYEEALELYKEALD----YLLQALKAEKE 45 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH----HHHHHhccCCC
Confidence 34444556889999998888888 67777666655
No 495
>KOG4521|consensus
Probab=33.03 E-value=1e+03 Score=29.42 Aligned_cols=30 Identities=10% Similarity=0.008 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ 71 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 71 (904)
+...+.+|.+|...|+..+|+.+|.++..-
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg 949 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSG 949 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhc
Confidence 456677888888888888999888888653
No 496
>PRK01631 hypothetical protein; Provisional
Probab=32.66 E-value=40 Score=25.81 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=19.0
Q ss_pred HHhhhhccCCCCHHHHHHHHHHhhc
Q psy17306 879 EQKKIDESEPLTEEELAEKEELLTQ 903 (904)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (904)
|..++..++-||++|.+|..+|=++
T Consensus 10 eLakK~K~~gLT~eE~~Eq~~LR~e 34 (76)
T PRK01631 10 ELSKKEKATGLTVDEKQEQQMLRQN 34 (76)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHH
Confidence 4455566899999999998887544
No 497
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=31.49 E-value=2e+02 Score=24.14 Aligned_cols=50 Identities=26% Similarity=0.242 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q psy17306 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 125 (904)
Q Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 125 (904)
.......|.+.+..|++..|.+...++-+..+..+-.+..-+.+....||
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 34445567777788888888888888877655555556655666666654
No 498
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=31.46 E-value=1.2e+02 Score=23.48 Aligned_cols=35 Identities=34% Similarity=0.359 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 3 DIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQ 37 (904)
Q Consensus 3 ~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~ 37 (904)
++-..+..++..|...-..|++++|+.+|.+++..
T Consensus 1 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 1 DFLQKAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
No 499
>PRK02539 hypothetical protein; Provisional
Probab=31.15 E-value=43 Score=26.26 Aligned_cols=25 Identities=36% Similarity=0.381 Sum_probs=18.9
Q ss_pred HHhhhhccCCCCHHHHHHHHHHhhc
Q psy17306 879 EQKKIDESEPLTEEELAEKEELLTQ 903 (904)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (904)
|..+...++-||+||.+|..+|=.+
T Consensus 11 eLakK~K~~gLT~eEk~Eq~~LR~e 35 (85)
T PRK02539 11 ELAKKKKTEGLTGEEKVEQAKLREE 35 (85)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHH
Confidence 4445556899999999999887544
No 500
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=31.02 E-value=1.2e+02 Score=32.01 Aligned_cols=47 Identities=11% Similarity=0.172 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcc------------hhHHHHHHHHhhccc
Q psy17306 680 IWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARI------------FDRANTLFYVSSYFM 728 (904)
Q Consensus 680 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~------------~~~A~~~~~~a~~~~ 728 (904)
..+|+.++++|..- +.|..|.++|.++..+|+ |.+|.+++++|-...
T Consensus 334 ~~~Al~yL~kA~d~--ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at 392 (404)
T PF12753_consen 334 IKKALEYLKKAQDE--DDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKAT 392 (404)
T ss_dssp HHHHHHHHHHHHHS----TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcc--CChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhcc
Confidence 46788888888763 456777777777776665 566666666665443
Done!