Query psy17306
Match_columns 904
No_of_seqs 1042 out of 3472
Neff 10.9
Searched_HMMs 29240
Date Fri Aug 16 18:38:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 6.9E-43 2.4E-47 381.2 46.9 386 12-713 3-388 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 5.5E-41 1.9E-45 366.2 47.2 382 47-744 4-385 (388)
3 2xpi_A Anaphase-promoting comp 100.0 6.4E-40 2.2E-44 380.3 43.3 480 7-742 83-594 (597)
4 2xpi_A Anaphase-promoting comp 100.0 8.2E-37 2.8E-41 354.2 40.7 417 9-709 118-595 (597)
5 2gw1_A Mitochondrial precursor 100.0 4.4E-36 1.5E-40 341.3 41.3 434 5-742 3-493 (514)
6 3fp2_A TPR repeat-containing p 100.0 1.1E-35 3.7E-40 340.0 41.4 443 5-739 22-503 (537)
7 2y4t_A DNAJ homolog subfamily 100.0 1.7E-34 5.7E-39 322.0 45.1 410 23-758 7-441 (450)
8 2y4t_A DNAJ homolog subfamily 100.0 6.7E-33 2.3E-37 309.1 42.6 244 2-301 20-290 (450)
9 3fp2_A TPR repeat-containing p 100.0 7.1E-34 2.4E-38 324.9 35.4 436 25-758 4-488 (537)
10 2gw1_A Mitochondrial precursor 100.0 1.9E-33 6.4E-38 319.5 34.7 434 41-758 5-475 (514)
11 3ieg_A DNAJ homolog subfamily 100.0 2.2E-31 7.7E-36 286.8 46.9 216 42-301 3-221 (359)
12 4g1t_A Interferon-induced prot 100.0 1.1E-32 3.9E-37 309.2 34.2 411 21-738 24-470 (472)
13 3ieg_A DNAJ homolog subfamily 100.0 6.5E-31 2.2E-35 283.2 43.8 325 8-633 3-354 (359)
14 4g1t_A Interferon-induced prot 100.0 1.3E-29 4.3E-34 284.4 36.9 378 5-672 48-472 (472)
15 2xm6_A Protein corresponding t 100.0 3.7E-27 1.3E-31 264.6 48.3 399 26-724 25-468 (490)
16 3hym_B Cell division cycle pro 100.0 1.1E-28 3.9E-33 262.2 33.3 310 31-636 11-322 (330)
17 3hym_B Cell division cycle pro 100.0 1.1E-28 3.8E-33 262.2 31.3 299 101-715 13-322 (330)
18 1fch_A Peroxisomal targeting s 100.0 1.1E-28 3.6E-33 266.9 29.8 329 88-727 13-359 (368)
19 2xm6_A Protein corresponding t 100.0 4.5E-26 1.6E-30 255.7 48.5 383 59-741 24-449 (490)
20 1fch_A Peroxisomal targeting s 100.0 2.3E-28 7.8E-33 264.3 25.1 94 543-647 254-358 (368)
21 2y9y_A Imitation switch protei 100.0 1.2E-29 4E-34 249.6 7.2 113 791-903 1-121 (374)
22 2ooe_A Cleavage stimulation fa 100.0 1.4E-25 4.9E-30 254.3 41.8 427 4-730 9-495 (530)
23 4eqf_A PEX5-related protein; a 100.0 5.6E-27 1.9E-31 252.9 27.8 293 130-728 47-357 (365)
24 1ofc_X ISWI protein; nuclear p 100.0 9.8E-29 3.4E-33 238.7 9.9 108 796-903 1-108 (304)
25 2ooe_A Cleavage stimulation fa 100.0 3.7E-25 1.3E-29 250.9 40.8 166 544-731 276-458 (530)
26 4eqf_A PEX5-related protein; a 100.0 6.3E-27 2.2E-31 252.5 24.9 275 77-660 66-364 (365)
27 2h6f_A Protein farnesyltransfe 99.9 6.8E-26 2.3E-30 240.9 27.6 262 225-742 88-363 (382)
28 2h6f_A Protein farnesyltransfe 99.9 9.9E-26 3.4E-30 239.7 25.5 246 4-301 93-352 (382)
29 3cv0_A Peroxisome targeting si 99.9 2.5E-25 8.7E-30 235.9 28.7 283 144-729 21-317 (327)
30 2pl2_A Hypothetical conserved 99.9 1.1E-24 3.7E-29 214.5 22.9 200 39-295 2-212 (217)
31 3cv0_A Peroxisome targeting si 99.9 2.2E-24 7.6E-29 228.6 26.9 239 7-301 20-273 (327)
32 2pl2_A Hypothetical conserved 99.9 3.5E-24 1.2E-28 210.9 22.9 200 5-261 2-212 (217)
33 3uq3_A Heat shock protein STI1 99.9 1.7E-23 5.7E-28 213.3 28.4 229 5-298 2-237 (258)
34 3e4b_A ALGK; tetratricopeptide 99.9 5.8E-24 2E-28 234.2 25.8 360 12-708 7-400 (452)
35 3u4t_A TPR repeat-containing p 99.9 6.2E-24 2.1E-28 218.5 23.3 238 8-302 3-255 (272)
36 3e4b_A ALGK; tetratricopeptide 99.9 1.3E-23 4.4E-28 231.5 26.1 348 46-729 7-389 (452)
37 3uq3_A Heat shock protein STI1 99.9 4.1E-23 1.4E-27 210.4 26.3 170 542-741 81-256 (258)
38 3mkr_A Coatomer subunit epsilo 99.9 2.3E-22 8E-27 207.1 30.4 152 544-721 134-288 (291)
39 3sf4_A G-protein-signaling mod 99.9 4.8E-23 1.6E-27 225.8 26.3 132 585-721 227-370 (406)
40 3u4t_A TPR repeat-containing p 99.9 2.5E-23 8.5E-28 214.0 21.7 178 543-742 77-265 (272)
41 3mkr_A Coatomer subunit epsilo 99.9 1.3E-22 4.5E-27 208.9 26.7 110 552-687 178-288 (291)
42 3sf4_A G-protein-signaling mod 99.9 4.9E-23 1.7E-27 225.6 23.6 93 585-682 267-365 (406)
43 2q7f_A YRRB protein; TPR, prot 99.9 2.9E-22 1E-26 202.0 22.4 220 7-282 22-241 (243)
44 3vtx_A MAMA; tetratricopeptide 99.9 5.9E-22 2E-26 190.0 20.9 170 540-731 5-174 (184)
45 4gyw_A UDP-N-acetylglucosamine 99.9 2.3E-22 7.9E-27 230.6 20.4 168 541-730 10-177 (723)
46 4a1s_A PINS, partner of inscut 99.9 8.9E-22 3E-26 216.0 23.6 54 230-283 122-181 (411)
47 4a1s_A PINS, partner of inscut 99.9 2.2E-21 7.4E-26 212.9 25.7 270 5-301 45-376 (411)
48 4abn_A Tetratricopeptide repea 99.9 1.7E-21 5.7E-26 216.0 24.7 213 24-293 84-317 (474)
49 3ro2_A PINS homolog, G-protein 99.9 7.6E-21 2.6E-25 202.1 27.5 108 585-697 223-336 (338)
50 1xi4_A Clathrin heavy chain; a 99.9 3.6E-19 1.2E-23 205.7 42.4 382 76-758 985-1381(1630)
51 1xi4_A Clathrin heavy chain; a 99.9 5.3E-19 1.8E-23 204.4 43.7 156 544-725 1254-1443(1630)
52 2ho1_A Type 4 fimbrial biogene 99.9 2E-20 6.7E-25 189.7 28.7 204 42-301 37-242 (252)
53 3vtx_A MAMA; tetratricopeptide 99.9 5.8E-21 2E-25 183.0 23.2 171 75-301 4-174 (184)
54 3ro2_A PINS homolog, G-protein 99.9 6.1E-21 2.1E-25 202.8 25.9 268 7-301 4-336 (338)
55 2vq2_A PILW, putative fimbrial 99.9 3.5E-20 1.2E-24 184.2 28.5 214 4-273 4-221 (225)
56 2ho1_A Type 4 fimbrial biogene 99.9 1.6E-20 5.3E-25 190.5 26.5 212 7-274 36-249 (252)
57 1ouv_A Conserved hypothetical 99.9 5.3E-20 1.8E-24 189.0 30.7 229 5-301 3-255 (273)
58 2q7f_A YRRB protein; TPR, prot 99.9 5.4E-21 1.8E-25 192.7 22.1 205 41-301 22-226 (243)
59 2vq2_A PILW, putative fimbrial 99.9 3.5E-20 1.2E-24 184.1 27.5 210 37-302 3-216 (225)
60 1xnf_A Lipoprotein NLPI; TPR, 99.9 7.2E-21 2.5E-25 195.9 21.9 240 15-291 12-269 (275)
61 1ouv_A Conserved hypothetical 99.9 1.1E-19 3.9E-24 186.5 29.5 157 544-730 78-254 (273)
62 4i17_A Hypothetical protein; T 99.9 7.5E-20 2.6E-24 182.1 26.1 209 8-279 7-225 (228)
63 1xnf_A Lipoprotein NLPI; TPR, 99.9 4.3E-20 1.5E-24 190.0 24.5 237 224-721 29-269 (275)
64 4i17_A Hypothetical protein; T 99.9 1.9E-20 6.7E-25 186.4 20.9 179 542-742 9-224 (228)
65 2ond_A Cleavage stimulation fa 99.9 2.6E-19 8.7E-24 187.0 30.3 221 25-301 33-274 (308)
66 4abn_A Tetratricopeptide repea 99.9 2.1E-20 7.2E-25 207.2 22.1 216 512-760 84-320 (474)
67 3ulq_A Response regulator aspa 99.8 7.3E-20 2.5E-24 198.2 24.3 175 542-728 186-369 (383)
68 3ulq_A Response regulator aspa 99.8 3.3E-19 1.1E-23 193.1 26.1 243 7-300 11-296 (383)
69 3nf1_A KLC 1, kinesin light ch 99.8 2.7E-20 9.4E-25 195.4 16.5 257 2-300 21-310 (311)
70 4gyw_A UDP-N-acetylglucosamine 99.8 7.4E-20 2.5E-24 209.9 20.8 175 71-301 4-178 (723)
71 2ond_A Cleavage stimulation fa 99.8 2.7E-18 9.3E-23 179.2 27.1 170 543-734 102-277 (308)
72 1b89_A Protein (clathrin heavy 99.8 7.5E-20 2.6E-24 190.7 12.9 332 52-735 13-363 (449)
73 4ga2_A E3 SUMO-protein ligase 99.8 5.6E-20 1.9E-24 168.4 10.2 147 545-713 2-149 (150)
74 3qky_A Outer membrane assembly 99.8 1.7E-18 5.8E-23 176.2 21.3 213 36-287 9-251 (261)
75 3nf1_A KLC 1, kinesin light ch 99.8 1E-18 3.4E-23 183.4 19.6 182 72-301 23-228 (311)
76 3urz_A Uncharacterized protein 99.8 1.8E-18 6.3E-23 168.6 19.5 167 543-732 7-191 (208)
77 3q15_A PSP28, response regulat 99.8 1.3E-17 4.6E-22 179.9 28.3 174 542-727 184-365 (378)
78 1b89_A Protein (clathrin heavy 99.8 1.3E-19 4.5E-24 188.8 11.5 373 18-740 13-396 (449)
79 3qky_A Outer membrane assembly 99.8 2.4E-18 8.2E-23 175.1 20.8 204 524-748 9-248 (261)
80 3dra_A Protein farnesyltransfe 99.8 1E-17 3.5E-22 170.2 24.2 236 10-301 34-292 (306)
81 3q15_A PSP28, response regulat 99.8 5.5E-17 1.9E-21 175.1 30.1 243 9-301 13-294 (378)
82 4e6h_A MRNA 3'-END-processing 99.8 2.6E-15 9E-20 169.9 44.5 453 23-737 47-580 (679)
83 4ga2_A E3 SUMO-protein ligase 99.8 2.6E-19 8.9E-24 164.0 9.5 146 14-159 3-149 (150)
84 3urz_A Uncharacterized protein 99.8 7.8E-18 2.7E-22 164.2 20.5 194 8-277 4-199 (208)
85 2pzi_A Probable serine/threoni 99.8 2E-18 6.8E-23 200.1 17.3 191 36-286 388-586 (681)
86 4gco_A Protein STI-1; structur 99.8 3.7E-18 1.3E-22 150.6 14.9 121 577-708 5-125 (126)
87 1qqe_A Vesicular transport pro 99.8 4.9E-18 1.7E-22 175.5 17.5 209 23-301 32-273 (292)
88 3dra_A Protein farnesyltransfe 99.8 1.2E-16 4E-21 162.4 27.0 157 554-732 124-293 (306)
89 3as5_A MAMA; tetratricopeptide 99.8 9.7E-18 3.3E-22 160.6 17.6 169 541-731 9-177 (186)
90 2pzi_A Probable serine/threoni 99.8 9.9E-18 3.4E-22 194.2 21.1 180 10-249 396-583 (681)
91 3as5_A MAMA; tetratricopeptide 99.8 3.4E-17 1.2E-21 156.8 20.4 166 2-167 2-167 (186)
92 1hz4_A MALT regulatory protein 99.8 2.1E-16 7.2E-21 170.4 28.9 268 5-301 11-326 (373)
93 1hz4_A MALT regulatory protein 99.8 8.3E-16 2.8E-20 165.7 33.4 176 76-299 14-205 (373)
94 2yhc_A BAMD, UPF0169 lipoprote 99.8 5.7E-17 2E-21 160.4 22.0 205 8-301 4-217 (225)
95 1qqe_A Vesicular transport pro 99.8 2E-17 6.9E-22 170.9 19.4 219 4-278 33-284 (292)
96 3dss_A Geranylgeranyl transfer 99.7 5.4E-16 1.9E-20 157.9 28.3 247 13-301 34-308 (331)
97 4e6h_A MRNA 3'-END-processing 99.7 1.8E-14 6.3E-19 163.0 42.8 448 4-700 62-577 (679)
98 3edt_B KLC 2, kinesin light ch 99.7 1.5E-17 5.2E-22 171.5 15.4 232 19-297 12-281 (283)
99 4gco_A Protein STI-1; structur 99.7 2.8E-17 9.5E-22 144.9 13.6 121 34-154 5-125 (126)
100 2r5s_A Uncharacterized protein 99.7 2E-17 6.9E-22 156.6 12.0 161 544-727 10-173 (176)
101 2yhc_A BAMD, UPF0169 lipoprote 99.7 9.2E-17 3.2E-21 158.9 17.3 179 542-731 6-217 (225)
102 3gyz_A Chaperone protein IPGC; 99.7 1.6E-17 5.6E-22 150.6 10.2 116 606-732 23-138 (151)
103 3edt_B KLC 2, kinesin light ch 99.7 3E-16 1E-20 161.7 18.9 212 3-264 38-282 (283)
104 3gyz_A Chaperone protein IPGC; 99.7 4.7E-17 1.6E-21 147.5 10.4 111 577-698 28-138 (151)
105 3qou_A Protein YBBN; thioredox 99.7 2.9E-16 9.8E-21 161.5 16.6 162 544-727 121-284 (287)
106 1p5q_A FKBP52, FK506-binding p 99.7 1E-16 3.6E-21 168.6 13.5 184 509-726 78-293 (336)
107 2vgx_A Chaperone SYCD; alterna 99.7 1.4E-16 4.7E-21 145.2 11.1 132 606-748 8-139 (148)
108 3q7a_A Farnesyltransferase alp 99.7 6.6E-15 2.3E-19 150.4 23.8 237 9-301 55-336 (349)
109 2r5s_A Uncharacterized protein 99.7 3.5E-16 1.2E-20 148.0 12.6 159 8-167 6-167 (176)
110 3dss_A Geranylgeranyl transfer 99.7 6.7E-14 2.3E-18 142.6 29.9 232 218-709 48-320 (331)
111 2vsy_A XCC0866; transferase, g 99.7 1.1E-15 3.7E-20 174.6 17.9 161 553-735 2-165 (568)
112 2vgx_A Chaperone SYCD; alterna 99.7 4.3E-16 1.5E-20 141.8 11.4 123 575-708 11-133 (148)
113 3qou_A Protein YBBN; thioredox 99.7 3.9E-15 1.3E-19 152.9 20.0 170 71-296 112-283 (287)
114 2xcb_A PCRH, regulatory protei 99.6 9.2E-16 3.1E-20 139.1 12.4 135 606-751 5-139 (142)
115 4f3v_A ESX-1 secretion system 99.6 2.3E-15 7.8E-20 148.5 16.0 208 8-274 7-247 (282)
116 2vsy_A XCC0866; transferase, g 99.6 6.5E-15 2.2E-19 168.1 19.7 146 22-167 3-151 (568)
117 3q7a_A Farnesyltransferase alp 99.6 3.9E-14 1.3E-18 144.7 22.7 160 544-725 127-329 (349)
118 2ifu_A Gamma-SNAP; membrane fu 99.6 3.6E-15 1.2E-19 155.2 15.4 206 20-301 3-227 (307)
119 4f3v_A ESX-1 secretion system 99.6 3.8E-15 1.3E-19 146.9 14.4 199 44-300 9-240 (282)
120 2c2l_A CHIP, carboxy terminus 99.6 2.6E-15 8.9E-20 153.7 13.2 200 39-299 1-201 (281)
121 2xcb_A PCRH, regulatory protei 99.6 3.1E-15 1E-19 135.6 12.1 126 577-713 10-135 (142)
122 3upv_A Heat shock protein STI1 99.6 1.6E-14 5.5E-19 127.9 15.6 118 582-710 1-124 (126)
123 2hr2_A Hypothetical protein; a 99.6 5.3E-15 1.8E-19 131.2 12.1 121 584-708 10-146 (159)
124 2c2l_A CHIP, carboxy terminus 99.6 1.2E-14 4E-19 148.8 15.8 177 542-745 6-182 (281)
125 2ifu_A Gamma-SNAP; membrane fu 99.6 4.8E-14 1.6E-18 146.7 20.1 216 7-289 9-253 (307)
126 2fbn_A 70 kDa peptidylprolyl i 99.6 4.2E-15 1.4E-19 143.7 11.1 160 544-725 8-184 (198)
127 2fo7_A Synthetic consensus TPR 99.6 5.5E-14 1.9E-18 126.1 17.7 134 9-142 2-135 (136)
128 2fo7_A Synthetic consensus TPR 99.6 4.3E-14 1.5E-18 126.8 17.0 134 586-730 2-135 (136)
129 1p5q_A FKBP52, FK506-binding p 99.6 8E-16 2.7E-20 161.8 5.6 199 22-297 79-294 (336)
130 3rjv_A Putative SEL1 repeat pr 99.6 1.1E-13 3.8E-18 134.9 20.4 184 26-275 4-207 (212)
131 3rjv_A Putative SEL1 repeat pr 99.6 1.4E-13 4.9E-18 134.1 20.0 179 59-301 3-201 (212)
132 1a17_A Serine/threonine protei 99.6 8.6E-14 3E-18 130.1 17.7 132 584-726 12-145 (166)
133 4gcn_A Protein STI-1; structur 99.6 5E-14 1.7E-18 124.3 14.3 117 583-704 6-122 (127)
134 3upv_A Heat shock protein STI1 99.6 6.7E-14 2.3E-18 123.8 14.9 113 42-154 4-122 (126)
135 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 8.4E-15 2.9E-19 161.0 10.9 152 552-725 246-413 (457)
136 3sz7_A HSC70 cochaperone (SGT) 99.5 5.1E-14 1.7E-18 131.3 14.6 116 581-707 7-122 (164)
137 2lni_A Stress-induced-phosphop 99.5 7.9E-14 2.7E-18 124.7 15.3 123 580-713 11-133 (133)
138 1hh8_A P67PHOX, NCF-2, neutrop 99.5 2.4E-13 8.3E-18 133.1 20.1 136 7-145 5-156 (213)
139 2vyi_A SGTA protein; chaperone 99.5 8.3E-14 2.8E-18 124.1 15.3 126 579-715 6-131 (131)
140 2hr2_A Hypothetical protein; a 99.5 2.3E-14 8E-19 127.1 11.2 134 619-752 11-156 (159)
141 1hh8_A P67PHOX, NCF-2, neutrop 99.5 1E-13 3.6E-18 135.8 16.9 142 542-697 8-154 (213)
142 2e2e_A Formate-dependent nitri 99.5 5.4E-14 1.9E-18 133.1 14.0 136 596-742 21-159 (177)
143 2e2e_A Formate-dependent nitri 99.5 5.2E-14 1.8E-18 133.2 13.5 134 546-701 16-152 (177)
144 3u3w_A Transcriptional activat 99.5 1.5E-13 5.1E-18 142.0 17.5 170 544-728 79-267 (293)
145 2qfc_A PLCR protein; TPR, HTH, 99.5 4.1E-13 1.4E-17 138.7 19.6 170 543-728 78-267 (293)
146 1a17_A Serine/threonine protei 99.5 4.1E-13 1.4E-17 125.4 17.8 135 5-139 10-146 (166)
147 1dce_A Protein (RAB geranylger 99.5 2.6E-14 8.9E-19 160.0 11.0 188 510-729 43-269 (567)
148 3q49_B STIP1 homology and U bo 99.5 2.4E-13 8.1E-18 122.4 14.9 124 580-714 4-132 (137)
149 3rkv_A Putative peptidylprolyl 99.5 1.8E-13 6.1E-18 127.2 14.2 124 583-717 9-151 (162)
150 3sz7_A HSC70 cochaperone (SGT) 99.5 2.8E-13 9.5E-18 126.2 15.1 124 615-749 7-132 (164)
151 4gcn_A Protein STI-1; structur 99.5 6E-13 2.1E-17 117.3 15.8 106 3-108 3-115 (127)
152 1na0_A Designed protein CTPR3; 99.5 8.1E-13 2.8E-17 116.4 16.7 121 581-712 4-125 (125)
153 2lni_A Stress-induced-phosphop 99.5 4.3E-13 1.5E-17 119.9 14.8 120 39-158 13-132 (133)
154 1dce_A Protein (RAB geranylger 99.5 1.1E-12 3.7E-17 146.9 21.4 167 555-743 44-237 (567)
155 2fbn_A 70 kDa peptidylprolyl i 99.5 5.6E-14 1.9E-18 135.7 9.2 157 585-752 4-176 (198)
156 2vyi_A SGTA protein; chaperone 99.5 9.6E-13 3.3E-17 117.1 16.1 119 41-159 11-129 (131)
157 1hxi_A PEX5, peroxisome target 99.5 2.4E-13 8.1E-18 118.7 11.7 101 587-698 19-119 (121)
158 3q49_B STIP1 homology and U bo 99.5 6.3E-13 2.2E-17 119.5 14.9 124 613-747 3-131 (137)
159 3mv2_B Coatomer subunit epsilo 99.5 7.1E-12 2.4E-16 125.3 23.4 223 15-301 20-286 (310)
160 2qfc_A PLCR protein; TPR, HTH, 99.5 3.9E-12 1.3E-16 131.3 22.5 163 5-167 72-260 (293)
161 1elw_A TPR1-domain of HOP; HOP 99.5 2E-12 7E-17 112.5 16.7 114 584-708 3-116 (118)
162 2uy1_A Cleavage stimulation fa 99.5 1.5E-10 5E-15 127.7 35.0 127 585-727 286-413 (493)
163 1hxi_A PEX5, peroxisome target 99.4 6.2E-13 2.1E-17 116.0 12.6 102 620-732 18-119 (121)
164 3rkv_A Putative peptidylprolyl 99.4 7.2E-13 2.5E-17 123.1 13.1 131 618-748 10-148 (162)
165 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 8.1E-14 2.8E-18 153.1 7.8 147 21-167 247-408 (457)
166 1na0_A Designed protein CTPR3; 99.4 4.3E-12 1.5E-16 111.7 16.6 116 42-157 9-124 (125)
167 3u3w_A Transcriptional activat 99.4 3.8E-12 1.3E-16 131.4 18.7 161 7-167 74-260 (293)
168 1wao_1 Serine/threonine protei 99.4 1.1E-13 3.8E-18 152.5 6.9 129 583-722 4-134 (477)
169 3gw4_A Uncharacterized protein 99.4 2.4E-12 8.3E-17 124.8 15.2 163 551-729 3-178 (203)
170 1elr_A TPR2A-domain of HOP; HO 99.4 3.3E-12 1.1E-16 113.6 14.8 128 582-714 1-128 (131)
171 2dba_A Smooth muscle cell asso 99.4 2.7E-12 9.1E-17 117.1 14.3 120 579-709 22-144 (148)
172 1elw_A TPR1-domain of HOP; HOP 99.4 7E-12 2.4E-16 109.0 16.1 111 43-153 5-115 (118)
173 2if4_A ATFKBP42; FKBP-like, al 99.4 2.9E-13 9.8E-18 142.3 8.2 142 580-732 174-333 (338)
174 2xev_A YBGF; tetratricopeptide 99.4 5.5E-12 1.9E-16 111.9 14.4 116 586-712 3-124 (129)
175 3mv2_B Coatomer subunit epsilo 99.4 3.2E-11 1.1E-15 120.6 21.3 186 27-271 85-290 (310)
176 1zu2_A Mitochondrial import re 99.4 9.5E-13 3.2E-17 116.5 8.6 99 596-698 13-125 (158)
177 2dba_A Smooth muscle cell asso 99.4 9E-12 3.1E-16 113.6 15.4 119 37-155 23-144 (148)
178 1ihg_A Cyclophilin 40; ppiase 99.4 5.2E-12 1.8E-16 133.9 15.5 126 584-720 222-363 (370)
179 2xev_A YBGF; tetratricopeptide 99.4 9.5E-12 3.3E-16 110.3 14.8 110 10-119 4-119 (129)
180 3gw4_A Uncharacterized protein 99.4 8.9E-12 3E-16 120.8 15.4 150 18-167 2-170 (203)
181 2kck_A TPR repeat; tetratricop 99.3 2.6E-12 8.8E-17 110.6 9.9 106 581-697 2-110 (112)
182 1zu2_A Mitochondrial import re 99.3 1.8E-12 6.2E-17 114.7 8.5 88 551-649 13-121 (158)
183 1wao_1 Serine/threonine protei 99.3 9E-13 3.1E-17 145.3 8.0 136 541-698 7-155 (477)
184 2if4_A ATFKBP42; FKBP-like, al 99.3 3E-12 1E-16 134.5 10.9 138 540-699 179-334 (338)
185 2kck_A TPR repeat; tetratricop 99.3 6.1E-12 2.1E-16 108.2 10.8 107 38-144 2-111 (112)
186 1elr_A TPR2A-domain of HOP; HO 99.3 2.1E-11 7.1E-16 108.3 13.8 116 6-122 2-124 (131)
187 3k9i_A BH0479 protein; putativ 99.3 2.3E-12 7.8E-17 111.9 7.2 95 597-702 2-99 (117)
188 3ro3_A PINS homolog, G-protein 99.3 2E-11 7E-16 113.2 13.6 141 584-729 8-160 (164)
189 3k9i_A BH0479 protein; putativ 99.3 7E-12 2.4E-16 108.8 9.1 94 55-148 3-99 (117)
190 1ihg_A Cyclophilin 40; ppiase 99.3 2.7E-11 9.3E-16 128.4 14.6 142 7-166 222-363 (370)
191 2uy1_A Cleavage stimulation fa 99.3 1.9E-08 6.5E-13 110.8 37.0 124 542-692 288-412 (493)
192 4b4t_Q 26S proteasome regulato 99.3 1.7E-10 5.6E-15 127.0 20.5 205 9-263 5-245 (434)
193 3ro3_A PINS homolog, G-protein 99.3 4.5E-11 1.5E-15 110.8 13.3 148 539-696 8-161 (164)
194 4b4t_Q 26S proteasome regulato 99.2 3.3E-10 1.1E-14 124.5 18.8 209 42-300 4-248 (434)
195 3n71_A Histone lysine methyltr 99.2 2.7E-10 9.4E-15 124.0 15.7 137 588-728 312-465 (490)
196 2l6j_A TPR repeat-containing p 99.1 7.4E-11 2.5E-15 101.2 8.2 96 618-724 3-104 (111)
197 2kat_A Uncharacterized protein 99.1 6E-10 2.1E-14 96.1 12.5 83 603-696 3-85 (115)
198 1na3_A Designed protein CTPR2; 99.1 1E-09 3.5E-14 89.9 11.2 85 617-712 7-91 (91)
199 2l6j_A TPR repeat-containing p 99.0 1.4E-10 4.7E-15 99.5 5.5 95 584-689 3-103 (111)
200 2kat_A Uncharacterized protein 99.0 1.1E-09 3.7E-14 94.5 10.1 83 60-142 3-85 (115)
201 1na3_A Designed protein CTPR2; 99.0 2.4E-09 8.1E-14 87.7 11.6 86 582-678 6-91 (91)
202 3n71_A Histone lysine methyltr 98.9 7.9E-09 2.7E-13 112.5 15.5 144 543-693 312-464 (490)
203 3ma5_A Tetratricopeptide repea 98.9 1.7E-09 5.9E-14 90.3 7.6 77 659-735 2-78 (100)
204 3ma5_A Tetratricopeptide repea 98.9 4.5E-09 1.5E-13 87.7 10.2 90 614-714 2-93 (100)
205 1klx_A Cysteine rich protein B 98.9 3E-08 1E-12 88.3 14.1 119 555-705 10-136 (138)
206 2kc7_A BFR218_protein; tetratr 98.9 4E-09 1.4E-13 88.0 7.9 91 622-731 3-94 (99)
207 2kc7_A BFR218_protein; tetratr 98.8 3.6E-09 1.2E-13 88.3 6.7 92 588-698 3-95 (99)
208 1klx_A Cysteine rich protein B 98.8 5.1E-08 1.7E-12 86.7 14.2 120 22-151 9-136 (138)
209 3u64_A Protein TP_0956; tetrat 98.8 1.6E-07 5.4E-12 91.1 18.0 111 615-730 148-272 (301)
210 3ly7_A Transcriptional activat 98.8 9.7E-08 3.3E-12 97.1 16.9 150 578-733 187-345 (372)
211 3ly7_A Transcriptional activat 98.8 1.5E-07 5E-12 95.8 16.7 136 8-144 196-344 (372)
212 3u64_A Protein TP_0956; tetrat 98.7 1.2E-07 4E-12 92.0 13.8 170 514-697 50-273 (301)
213 3qwp_A SET and MYND domain-con 98.7 1.3E-07 4.5E-12 101.4 14.3 116 593-712 295-427 (429)
214 3bee_A Putative YFRE protein; 98.6 2.1E-07 7.1E-12 75.4 10.9 81 660-740 2-85 (93)
215 3qww_A SET and MYND domain-con 98.6 1.5E-07 5.2E-12 100.6 12.9 102 596-701 309-424 (433)
216 1pc2_A Mitochondria fission pr 98.6 4.5E-07 1.5E-11 79.2 12.5 91 602-703 15-110 (152)
217 3bee_A Putative YFRE protein; 98.5 5.3E-07 1.8E-11 72.9 10.6 71 72-142 2-75 (93)
218 1pc2_A Mitochondria fission pr 98.5 1.1E-06 3.8E-11 76.7 12.8 93 24-116 14-111 (152)
219 2v5f_A Prolyl 4-hydroxylase su 98.5 1.3E-06 4.5E-11 72.9 11.9 86 618-707 4-89 (104)
220 3qww_A SET and MYND domain-con 98.5 3.3E-07 1.1E-11 98.0 9.4 94 631-728 310-412 (433)
221 3qwp_A SET and MYND domain-con 98.4 1.6E-06 5.4E-11 93.1 11.6 122 548-676 295-425 (429)
222 2v5f_A Prolyl 4-hydroxylase su 98.2 8.3E-06 2.8E-10 68.0 10.9 80 664-743 5-91 (104)
223 4g26_A Pentatricopeptide repea 98.1 0.0002 7E-09 78.6 21.5 165 544-731 30-208 (501)
224 1nzn_A CGI-135 protein, fissio 98.0 8.1E-05 2.8E-09 62.3 12.8 98 600-708 16-118 (126)
225 4g26_A Pentatricopeptide repea 97.9 0.00064 2.2E-08 74.6 21.9 152 15-167 33-198 (501)
226 1nzn_A CGI-135 protein, fissio 97.9 0.00015 5.2E-09 60.7 12.7 93 23-115 16-113 (126)
227 4h7y_A Dual specificity protei 97.6 0.00063 2.1E-08 58.0 10.8 118 614-735 8-131 (161)
228 3ffl_A Anaphase-promoting comp 97.5 0.00047 1.6E-08 60.4 9.8 132 10-154 22-165 (167)
229 4h7y_A Dual specificity protei 97.5 0.0023 8E-08 54.5 13.2 109 37-146 8-130 (161)
230 3ffl_A Anaphase-promoting comp 97.5 0.00055 1.9E-08 60.0 9.6 121 584-724 19-148 (167)
231 1y8m_A FIS1; mitochondria, unk 97.1 0.02 6.8E-07 48.7 14.8 81 616-707 36-120 (144)
232 3o48_A Mitochondria fission 1 97.1 0.0095 3.3E-07 49.9 12.6 79 618-707 39-121 (134)
233 3o48_A Mitochondria fission 1 97.1 0.0065 2.2E-07 50.9 11.4 85 663-747 39-127 (134)
234 1y8m_A FIS1; mitochondria, unk 96.9 0.021 7.2E-07 48.5 13.0 71 41-111 38-112 (144)
235 3kae_A CDC27, possible protein 96.2 0.55 1.9E-05 40.7 17.7 165 544-729 37-239 (242)
236 4gns_B Protein CSD3, chitin bi 96.2 0.036 1.2E-06 62.7 13.1 57 112-168 339-395 (754)
237 3mkq_A Coatomer beta'-subunit; 96.1 0.27 9.2E-06 58.1 21.5 128 17-165 608-744 (814)
238 3kae_A CDC27, possible protein 96.1 0.63 2.2E-05 40.3 18.0 121 17-145 11-149 (242)
239 3txn_A 26S proteasome regulato 96.0 0.53 1.8E-05 48.8 20.1 199 493-714 19-236 (394)
240 3txn_A 26S proteasome regulato 95.7 0.29 9.9E-06 50.8 16.7 176 539-727 18-210 (394)
241 4gns_B Protein CSD3, chitin bi 95.6 0.11 3.8E-06 58.8 13.8 128 597-725 260-398 (754)
242 1zbp_A Hypothetical protein VP 95.4 0.23 7.8E-06 47.6 13.2 122 15-143 4-133 (273)
243 3mkq_B Coatomer subunit alpha; 95.2 0.71 2.4E-05 41.3 15.0 97 53-167 16-112 (177)
244 1zbp_A Hypothetical protein VP 95.0 0.29 1E-05 46.9 12.5 57 595-651 7-63 (273)
245 3mkq_A Coatomer beta'-subunit; 94.9 0.96 3.3E-05 53.2 20.2 141 12-191 633-773 (814)
246 1qsa_A Protein (soluble lytic 94.8 3.6 0.00012 45.7 22.9 78 218-296 270-347 (618)
247 3mkq_B Coatomer subunit alpha; 94.0 1.3 4.4E-05 39.6 13.8 110 584-725 7-116 (177)
248 2ff4_A Probable regulatory pro 94.0 0.5 1.7E-05 49.5 13.2 118 9-139 116-234 (388)
249 2ff4_A Probable regulatory pro 93.8 0.46 1.6E-05 49.9 12.5 115 588-726 118-233 (388)
250 1ya0_A SMG-7 transcript varian 93.5 0.63 2.2E-05 50.0 13.1 81 620-711 153-233 (497)
251 4b4t_P 26S proteasome regulato 93.5 4.5 0.00015 43.1 19.7 204 5-263 14-247 (445)
252 3spa_A Mtrpol, DNA-directed RN 93.1 0.81 2.8E-05 53.0 13.5 112 618-737 126-240 (1134)
253 4fhn_B Nucleoporin NUP120; pro 92.8 5 0.00017 48.9 21.1 117 47-167 817-961 (1139)
254 3spa_A Mtrpol, DNA-directed RN 92.7 1.2 4E-05 51.7 13.9 96 44-139 129-230 (1134)
255 1ya0_A SMG-7 transcript varian 92.2 0.74 2.5E-05 49.5 11.2 63 586-648 153-215 (497)
256 1qsa_A Protein (soluble lytic 91.5 20 0.00068 39.8 41.0 146 8-162 6-154 (618)
257 4b4t_P 26S proteasome regulato 90.3 21 0.00071 37.9 23.7 65 234-298 177-248 (445)
258 4b4t_S RPN3, 26S proteasome re 89.9 0.23 7.8E-06 52.9 4.4 144 546-697 142-303 (523)
259 4b4t_R RPN7, 26S proteasome re 89.0 1.4 4.7E-05 46.9 9.9 101 585-693 131-237 (429)
260 4fhn_B Nucleoporin NUP120; pro 88.9 4.5 0.00015 49.3 15.4 143 590-736 817-976 (1139)
261 4b4t_R RPN7, 26S proteasome re 88.7 2 7E-05 45.6 10.9 100 41-140 130-238 (429)
262 4b4t_S RPN3, 26S proteasome re 86.4 1.4 4.9E-05 46.8 7.7 125 17-143 145-303 (523)
263 2wpv_A GET4, UPF0363 protein Y 85.0 22 0.00075 35.3 15.0 126 552-688 25-158 (312)
264 3lpz_A GET4 (YOR164C homolog); 80.2 51 0.0017 32.9 27.7 122 12-133 16-159 (336)
265 3lvg_A Clathrin heavy chain 1; 70.8 0.0001 3.6E-09 75.9 -28.3 61 232-297 52-112 (624)
266 3esl_A Checkpoint serine/threo 70.0 47 0.0016 30.2 11.1 73 658-731 74-148 (202)
267 2crb_A Nuclear receptor bindin 69.0 19 0.00066 27.5 6.8 38 619-660 15-52 (97)
268 3ax2_A Mitochondrial import re 66.3 9.3 0.00032 28.1 4.7 35 704-738 23-57 (73)
269 4gq2_M Nucleoporin NUP120; bet 66.2 66 0.0023 38.0 14.8 99 591-693 816-926 (950)
270 2wvi_A Mitotic checkpoint seri 59.8 57 0.002 28.6 9.4 68 658-731 60-129 (164)
271 4gq2_M Nucleoporin NUP120; bet 59.1 72 0.0025 37.7 13.3 88 48-139 816-926 (950)
272 2ijq_A Hypothetical protein; s 58.0 48 0.0017 28.9 8.5 60 11-70 35-103 (161)
273 1wy6_A Hypothetical protein ST 56.2 47 0.0016 27.9 7.6 55 51-105 100-154 (172)
274 1om2_A Protein (mitochondrial 51.2 18 0.00062 28.1 4.2 36 703-738 25-60 (95)
275 3ax2_A Mitochondrial import re 49.4 40 0.0014 24.7 5.6 32 11-42 20-51 (73)
276 2w2u_A Hypothetical P60 katani 49.1 36 0.0012 25.9 5.6 32 626-661 26-57 (83)
277 2w2u_A Hypothetical P60 katani 48.5 27 0.00093 26.5 4.8 32 5-36 16-47 (83)
278 3lvg_A Clathrin heavy chain 1; 48.1 0.0042 1.4E-07 64.3 -21.3 221 41-281 53-276 (624)
279 2v6y_A AAA family ATPase, P60 46.5 41 0.0014 25.5 5.6 32 627-662 19-50 (83)
280 4a1g_A Mitotic checkpoint seri 46.5 1.2E+02 0.0042 26.1 9.1 68 658-731 65-134 (152)
281 2qx5_A Nucleoporin NIC96; mRNA 45.6 2.6E+02 0.0087 31.1 14.0 221 16-293 302-563 (661)
282 2crb_A Nuclear receptor bindin 43.9 34 0.0012 26.2 4.5 29 664-692 15-43 (97)
283 2vkj_A TM1634; membrane protei 43.3 79 0.0027 23.9 6.3 28 8-35 53-80 (106)
284 2cwy_A Hypothetical protein TT 40.4 66 0.0023 25.1 6.0 57 12-70 5-67 (94)
285 2jvd_A UPF0291 protein YNZC; s 40.4 14 0.00047 25.1 1.7 25 879-903 12-36 (54)
286 3bhp_A UPF0291 protein YNZC; N 39.0 14 0.00049 25.7 1.7 25 879-903 12-36 (60)
287 1wy6_A Hypothetical protein ST 38.6 1.8E+02 0.0062 24.6 14.6 124 12-140 11-155 (172)
288 4a5x_A MITD1, MIT domain-conta 38.1 1.3E+02 0.0045 22.9 8.3 36 624-663 21-56 (86)
289 4aez_C MAD3, mitotic spindle c 38.0 1.1E+02 0.0038 28.3 8.0 68 658-731 114-183 (223)
290 2v6y_A AAA family ATPase, P60 37.2 57 0.0019 24.7 5.1 32 5-36 8-39 (83)
291 2rpa_A Katanin P60 ATPase-cont 36.7 32 0.0011 25.7 3.5 26 11-36 15-40 (78)
292 1wfd_A Hypothetical protein 15 36.6 1.5E+02 0.005 23.0 8.3 34 626-663 22-55 (93)
293 2v6x_A Vacuolar protein sortin 36.1 64 0.0022 24.5 5.3 33 4-36 9-41 (85)
294 2wpv_A GET4, UPF0363 protein Y 35.2 3.4E+02 0.012 26.8 25.3 26 142-167 132-157 (312)
295 3t5x_A PCI domain-containing p 35.2 74 0.0025 29.2 6.6 51 585-635 14-69 (203)
296 4a5x_A MITD1, MIT domain-conta 35.1 63 0.0022 24.7 5.1 30 7-36 15-44 (86)
297 3mv2_A Coatomer subunit alpha; 35.0 3.4E+02 0.012 26.8 12.8 33 5-38 112-144 (325)
298 3esl_A Checkpoint serine/threo 34.9 2.6E+02 0.0089 25.4 13.3 78 63-141 58-146 (202)
299 2hzs_I RNA polymerase II media 34.8 5.7 0.0002 21.1 -0.6 11 826-836 2-12 (27)
300 1wfd_A Hypothetical protein 15 34.3 66 0.0023 25.0 5.2 31 5-35 12-42 (93)
301 4a1g_A Mitotic checkpoint seri 34.2 1.9E+02 0.0065 24.9 8.4 65 72-142 67-133 (152)
302 3t5v_B Nuclear mRNA export pro 33.1 1E+02 0.0034 32.5 7.9 87 23-109 141-254 (455)
303 2cfu_A SDSA1; SDS-hydrolase, l 32.6 66 0.0023 36.0 6.9 50 42-91 449-498 (658)
304 2cpt_A SKD1 protein, vacuolar 32.3 1.2E+02 0.0042 24.7 6.6 27 630-660 29-55 (117)
305 3t5x_A PCI domain-containing p 31.2 1.1E+02 0.0038 28.0 7.1 32 43-74 15-46 (203)
306 4ady_A RPN2, 26S proteasome re 30.9 6.9E+02 0.024 29.1 42.5 155 544-726 494-657 (963)
307 2wvi_A Mitotic checkpoint seri 30.4 2.4E+02 0.0082 24.6 8.6 68 228-301 60-129 (164)
308 1om2_A Protein (mitochondrial 30.0 66 0.0022 25.1 4.3 31 10-40 22-52 (95)
309 3he5_A Synzip1; heterodimeric 29.9 35 0.0012 20.9 2.1 17 842-858 31-47 (49)
310 3re2_A Predicted protein; meni 29.2 2E+02 0.007 28.6 8.5 91 662-752 253-353 (472)
311 3t5v_B Nuclear mRNA export pro 28.9 1.6E+02 0.0053 31.1 8.5 73 543-618 179-254 (455)
312 2vkj_A TM1634; membrane protei 27.9 1.9E+02 0.0063 21.9 6.1 30 664-693 53-82 (106)
313 2cpt_A SKD1 protein, vacuolar 27.6 96 0.0033 25.3 5.3 33 4-36 14-46 (117)
314 2dl1_A Spartin; SPG20, MIT, st 26.6 1.8E+02 0.0061 23.6 6.4 20 734-753 80-99 (116)
315 2br9_A 14-3-3E, 14-3-3 protein 26.1 4.1E+02 0.014 24.8 12.0 139 588-726 8-201 (234)
316 4b4t_O 26S proteasome regulato 25.4 5.6E+02 0.019 26.2 12.5 97 592-692 83-197 (393)
317 3ubw_A 14-3-3E, 14-3-3 protein 25.2 4.5E+02 0.015 25.0 12.7 139 588-726 34-227 (261)
318 2ijq_A Hypothetical protein; s 24.6 3.5E+02 0.012 23.5 9.3 63 236-298 34-105 (161)
319 2rpa_A Katanin P60 ATPase-cont 24.6 51 0.0017 24.6 2.7 27 667-693 15-41 (78)
320 2v6x_A Vacuolar protein sortin 24.6 2.3E+02 0.0078 21.4 8.1 31 628-662 22-52 (85)
321 3u84_A Menin; MLL, JUND, ledgf 24.5 4.4E+02 0.015 26.9 10.0 43 604-646 298-345 (550)
322 2dl1_A Spartin; SPG20, MIT, st 24.0 2.5E+02 0.0086 22.7 6.8 27 632-662 35-61 (116)
323 3lpz_A GET4 (YOR164C homolog); 22.3 5.9E+02 0.02 25.3 28.7 26 142-167 134-159 (336)
324 4gq4_A Menin; tumor suppressor 22.2 4.9E+02 0.017 26.6 9.9 44 603-646 282-330 (489)
325 3u84_A Menin; MLL, JUND, ledgf 22.1 3.4E+02 0.012 27.6 8.7 44 95-138 298-346 (550)
326 3mkr_B Coatomer subunit alpha; 21.5 5.9E+02 0.02 25.0 12.7 33 6-39 101-133 (320)
327 4gq4_A Menin; tumor suppressor 20.7 3.9E+02 0.013 27.3 8.8 31 663-693 302-332 (489)
328 2e2a_A Protein (enzyme IIA); h 20.5 1.5E+02 0.005 23.7 4.8 31 5-35 17-47 (105)
329 1wcr_A PTS system, N, N'-diace 20.2 1.5E+02 0.0052 23.5 4.8 30 5-34 15-44 (103)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6.9e-43 Score=381.24 Aligned_cols=386 Identities=60% Similarity=0.912 Sum_probs=367.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCc
Q psy17306 12 LELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 91 (904)
Q Consensus 12 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 91 (904)
+.+|..++..|++++|+..+.++++.+|+++.++..+|.++...|++++|...++++++.+|.++.++..+|.++...|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy17306 92 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRS 171 (904)
Q Consensus 92 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (904)
+++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~---- 158 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY---- 158 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH----
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHH----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHH
Q psy17306 172 DLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 251 (904)
Q Consensus 172 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 251 (904)
.+++..+|+++.++..+|.++...|+++
T Consensus 159 ----------------------------------------------------~~al~~~p~~~~~~~~l~~~~~~~g~~~ 186 (388)
T 1w3b_A 159 ----------------------------------------------------LKAIETQPNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp ----------------------------------------------------HHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred ----------------------------------------------------HHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 6888889999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcc
Q psy17306 252 EALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMM 331 (904)
Q Consensus 252 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 331 (904)
+|+..|++++..+|+++.++..+|.++...|++++|+..|++++...|+++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------------- 237 (388)
T 1w3b_A 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA----------------------------- 237 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH-----------------------------
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH-----------------------------
Confidence 999999999999999999999999999999999999999999999998771
Q ss_pred cccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccH
Q psy17306 332 KRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTE 411 (904)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (904)
T Consensus 238 -------------------------------------------------------------------------------- 237 (388)
T 1w3b_A 238 -------------------------------------------------------------------------------- 237 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhh
Q psy17306 412 EQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCV 491 (904)
Q Consensus 412 ~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (904)
T Consensus 238 -------------------------------------------------------------------------------- 237 (388)
T 1w3b_A 238 -------------------------------------------------------------------------------- 237 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhh
Q psy17306 492 EKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSA 571 (904)
Q Consensus 492 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~ 571 (904)
.++..+|.++...|++++|+..|++
T Consensus 238 -------------------------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~------ 262 (388)
T 1w3b_A 238 -------------------------------------------------VVHGNLACVYYEQGLIDLAIDTYRR------ 262 (388)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHH------
T ss_pred -------------------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHH------
Confidence 1236678888899999999999999
Q ss_pred hHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChh
Q psy17306 572 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS 651 (904)
Q Consensus 572 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 651 (904)
++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+.
T Consensus 263 -----al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~----------- 326 (388)
T 1w3b_A 263 -----AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR----------- 326 (388)
T ss_dssp -----HHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH-----------
T ss_pred -----HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHH-----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcc
Q psy17306 652 CYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARI 713 (904)
Q Consensus 652 ~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 713 (904)
.+.++++.+|+++.+++++|.++...|++++|+..|+++++++|+++.+++++|.++..+|+
T Consensus 327 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 66777778899999999999999999999999999999999999999999999999988774
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5.5e-41 Score=366.15 Aligned_cols=382 Identities=26% Similarity=0.356 Sum_probs=363.0
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q psy17306 47 LLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 126 (904)
Q Consensus 47 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 126 (904)
.+|..++..|++++|+..+.++++.+|+++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHH
Q psy17306 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIV 206 (904)
Q Consensus 127 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 206 (904)
++|+..|+++++.+|++..++..+|.++...|++++|+..+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~--------------------------------------- 124 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY--------------------------------------- 124 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHH---------------------------------------
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHH---------------------------------------
Confidence 99999999999999999999999999999999999999988
Q ss_pred HhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy17306 207 CNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 286 (904)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (904)
.+++..+|+...++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++
T Consensus 125 -----------------~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 187 (388)
T 1w3b_A 125 -----------------VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp -----------------HHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred -----------------HHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 688889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhcccccc
Q psy17306 287 AVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLH 366 (904)
Q Consensus 287 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (904)
|+..|+++++.+|++.
T Consensus 188 A~~~~~~al~~~p~~~---------------------------------------------------------------- 203 (388)
T 1w3b_A 188 AIHHFEKAVTLDPNFL---------------------------------------------------------------- 203 (388)
T ss_dssp HHHHHHHHHHHCTTCH----------------------------------------------------------------
T ss_pred HHHHHHHHHhcCCCcH----------------------------------------------------------------
Confidence 9999999999998771
Q ss_pred ccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhh
Q psy17306 367 SGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSR 446 (904)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~ 446 (904)
T Consensus 204 -------------------------------------------------------------------------------- 203 (388)
T 1w3b_A 204 -------------------------------------------------------------------------------- 203 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccC
Q psy17306 447 WRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTN 526 (904)
Q Consensus 447 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 526 (904)
T Consensus 204 -------------------------------------------------------------------------------- 203 (388)
T 1w3b_A 204 -------------------------------------------------------------------------------- 203 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Q psy17306 527 PEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALE 606 (904)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 606 (904)
.++..+|.++...|++++|+..|++ ++..+|+++.++..+|.++...|++++|+.
T Consensus 204 --------------~~~~~lg~~~~~~~~~~~A~~~~~~-----------al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 258 (388)
T 1w3b_A 204 --------------DAYINLGNVLKEARIFDRAVAAYLR-----------ALSLSPNHAVVHGNLACVYYEQGLIDLAID 258 (388)
T ss_dssp --------------HHHHHHHHHHHTTTCTTHHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------HHHHHHHHHHHHcCCHHHHHHHHHH-----------HHhhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 1236677888899999999999999 999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHH
Q psy17306 607 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHH 686 (904)
Q Consensus 607 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 686 (904)
.|+++++.+|+++.++.++|.++...|++++|+. .+.++++.+|+++.++..+|.++...|++++|+..
T Consensus 259 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-----------~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (388)
T 1w3b_A 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAED-----------CYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp HHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999999999 66666677889999999999999999999999999
Q ss_pred HHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHH
Q psy17306 687 FEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAK 744 (904)
Q Consensus 687 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 744 (904)
|+++++++|+++.++.++|.++...|++++|+..|++++...|+..++...++.+...
T Consensus 328 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHH
Confidence 9999999999999999999999999999999999999999999988888888776643
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-40 Score=380.28 Aligned_cols=480 Identities=13% Similarity=0.016 Sum_probs=404.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
....+...+..+...|++++|+..|++++...|+ ...++.+|.++...|++++|+..|++++.. |.++.++..+|.+|
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCL 160 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCC-chHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHH
Confidence 3566788999999999999999999999999995 477889999999999999999999998765 66788999999999
Q ss_pred HHhCcHHHHHHHHHHHHhcC----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHH
Q psy17306 87 KERGQLQEALENYRHAVRLK----------------PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDL 150 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 150 (904)
...|++++|+..|++..... |.+..++..+|.+|...|++++|+..|+++++.+|++..++..+
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 240 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQL 240 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 99999999999998632222 22478999999999999999999999999999999999999988
Q ss_pred HHHHHHcCChHHHHHHH---------------HHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcc
Q psy17306 151 GNLLKALGRLDEAKDLY---------------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPT 215 (904)
Q Consensus 151 a~~~~~~~~~~~A~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (904)
+.++...+....+.... ..+..++..+...|++++|+..+.+
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~----------------------- 297 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS----------------------- 297 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT-----------------------
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH-----------------------
Confidence 87765443332221110 1233445666677777888877764
Q ss_pred hHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 216 TLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295 (904)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 295 (904)
++.. |.+..++..+|.++...|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++
T Consensus 298 ----------~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
T 2xpi_A 298 ----------INGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366 (597)
T ss_dssp ----------STTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ----------hhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3333 67789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchh
Q psy17306 296 QYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVH 375 (904)
Q Consensus 296 ~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (904)
+..|++. ...
T Consensus 367 ~~~~~~~----------------------------------------------------------------------~~~ 376 (597)
T 2xpi_A 367 DRHPEKA----------------------------------------------------------------------VTW 376 (597)
T ss_dssp HHCTTSH----------------------------------------------------------------------HHH
T ss_pred hhCcccH----------------------------------------------------------------------HHH
Confidence 9888771 122
Q ss_pred hHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccc
Q psy17306 376 EAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLH 455 (904)
Q Consensus 376 ~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~ 455 (904)
..++.++...|. +++|+..|++++..
T Consensus 377 ~~l~~~~~~~g~------------------------------~~~A~~~~~~~~~~------------------------ 402 (597)
T 2xpi_A 377 LAVGIYYLCVNK------------------------------ISEARRYFSKSSTM------------------------ 402 (597)
T ss_dssp HHHHHHHHHTTC------------------------------HHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHhcc------------------------------HHHHHHHHHHHHHh------------------------
Confidence 223333333333 66777777776654
Q ss_pred cccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHH
Q psy17306 456 GIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAA 535 (904)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 535 (904)
.|.++.
T Consensus 403 ----------------------------------------------------------------------~~~~~~---- 408 (597)
T 2xpi_A 403 ----------------------------------------------------------------------DPQFGP---- 408 (597)
T ss_dssp ----------------------------------------------------------------------CTTCHH----
T ss_pred ----------------------------------------------------------------------CCCCHH----
Confidence 233322
Q ss_pred HHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 536 ARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 615 (904)
Q Consensus 536 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (904)
+|..+|.++...|++++|+..|++ ++...|.+..++..+|.++...|++++|++.|+++++..
T Consensus 409 ------~~~~l~~~~~~~g~~~~A~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 409 ------AWIGFAHSFAIEGEHDQAISAYTT-----------AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp ------HHHHHHHHHHHHTCHHHHHHHHHH-----------HHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHH-----------HHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 248889999999999999999999 999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcch-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q psy17306 616 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDF-AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD 694 (904)
Q Consensus 616 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 694 (904)
|.++.++..+|.++...|++++|++.|+++++..|+ ...+|+. +.+|..+|.+|...|++++|+..|+++++++
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK-----TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc-----cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999988877764322 2346775 8899999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHH
Q psy17306 695 PNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCE 742 (904)
Q Consensus 695 p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 742 (904)
|+++.++..+|.+|...|++++|.++|+++++..|++......++.++
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 999999999999999999999999999999999999888888777654
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.2e-37 Score=354.15 Aligned_cols=417 Identities=14% Similarity=0.107 Sum_probs=347.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC----------------
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQN---------------- 72 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------- 72 (904)
..++.+|..+...|++++|+..|++++.. |.++.++..++.+|...|++++|+..|++.....
T Consensus 118 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (597)
T 2xpi_A 118 NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGI 196 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSC
T ss_pred hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccccccccc
Confidence 56788999999999999999999998765 6779999999999999999999999999643333
Q ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--------------------------------
Q psy17306 73 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL-------------------------------- 120 (904)
Q Consensus 73 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-------------------------------- 120 (904)
|.+..+|..+|.+|...|++++|+..|+++++.+|++..++..++.++
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 276 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence 335889999999999999999999999999999999999888776543
Q ss_pred ------HHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcC
Q psy17306 121 ------VAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENI 194 (904)
Q Consensus 121 ------~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 194 (904)
...|++++|+..|+++++. |.+..++..++.++...|++++|+..|
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~--------------------------- 328 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAIT--------------------------- 328 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHH---------------------------
T ss_pred HHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHH---------------------------
Confidence 3456677777777776666 556667777777777777777666666
Q ss_pred CCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy17306 195 KPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 274 (904)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 274 (904)
++++..+|.+..++..++.++...|++++|+..+++++...|+++.++..+
T Consensus 329 -----------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 379 (597)
T 2xpi_A 329 -----------------------------TKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAV 379 (597)
T ss_dssp -----------------------------HHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred -----------------------------HHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence 467777788888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhH
Q psy17306 275 AAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAV 354 (904)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (904)
|.+|...|++++|+..|+++++..|.+.
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------------------------------------------- 407 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMDPQFG---------------------------------------------------- 407 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCH----------------------------------------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCH----------------------------------------------------
Confidence 8888888888889888888888888761
Q ss_pred HHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCc
Q psy17306 355 NIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKL 434 (904)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~ 434 (904)
.....++.++...|. +++|+..|++++..
T Consensus 408 ------------------~~~~~l~~~~~~~g~------------------------------~~~A~~~~~~~~~~--- 436 (597)
T 2xpi_A 408 ------------------PAWIGFAHSFAIEGE------------------------------HDQAISAYTTAARL--- 436 (597)
T ss_dssp ------------------HHHHHHHHHHHHHTC------------------------------HHHHHHHHHHHHHT---
T ss_pred ------------------HHHHHHHHHHHHcCC------------------------------HHHHHHHHHHHHHh---
Confidence 012223333333333 66677777666654
Q ss_pred chhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHH
Q psy17306 435 TKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKA 514 (904)
Q Consensus 435 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 514 (904)
T Consensus 437 -------------------------------------------------------------------------------- 436 (597)
T 2xpi_A 437 -------------------------------------------------------------------------------- 436 (597)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHH
Q psy17306 515 YLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNV 594 (904)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~ 594 (904)
.|+++. ++..+|.++...|++++|+..|++ ++...|.++.+|..+|.+
T Consensus 437 -----------~~~~~~----------~~~~l~~~~~~~g~~~~A~~~~~~-----------~~~~~~~~~~~~~~l~~~ 484 (597)
T 2xpi_A 437 -----------FQGTHL----------PYLFLGMQHMQLGNILLANEYLQS-----------SYALFQYDPLLLNELGVV 484 (597)
T ss_dssp -----------TTTCSH----------HHHHHHHHHHHHTCHHHHHHHHHH-----------HHHHCCCCHHHHHHHHHH
T ss_pred -----------CccchH----------HHHHHHHHHHHcCCHHHHHHHHHH-----------HHHhCCCChHHHHHHHHH
Confidence 222222 237788999999999999999999 999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhh------CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHH
Q psy17306 595 YKERGQLQEALENYRHAVRL------KPDF-IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAW 667 (904)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~------~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~ 667 (904)
+...|++++|+..|+++++. +|+. ..++..+|.++...|++++|+. .+.++++.+|+++.+|
T Consensus 485 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~-----------~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID-----------ALNQGLLLSTNDANVH 553 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHSSCCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH-----------HHHHHHHhCCCChHHH
Confidence 99999999999999999998 6765 7899999999999999999999 6666667789999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy17306 668 SNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLK 709 (904)
Q Consensus 668 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 709 (904)
..+|.+|...|++++|+..|+++++++|+++.++..++.+|.
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998875
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-36 Score=341.25 Aligned_cols=434 Identities=16% Similarity=0.111 Sum_probs=350.4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGN 84 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 84 (904)
...+.+++.+|..++..|++++|+..|++++..+| ++.++..+|.++...|++++|+..++++++.+|++..++..+|.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 35678899999999999999999999999999999 69999999999999999999999999999999999999999999
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH---HHHHh------------------c----
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY---VTALQ------------------Y---- 139 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~---~~al~------------------~---- 139 (904)
++..+|++++|+..|++++..+|.+...................+...+ +.+.. .
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999999999876544333322222222111111111 11100 0
Q ss_pred --------------------CCChhhHHHHHHHHHHH---cCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCC
Q psy17306 140 --------------------NPDLYCVRSDLGNLLKA---LGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKP 196 (904)
Q Consensus 140 --------------------~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 196 (904)
.|++..++..+|.++.. .|++++|+..+ ++++..++..+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~----------------~~~~~~~~~~~~~ 225 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESF----------------TKAARLFEEQLDK 225 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHH----------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHH----------------HHHHHHhhhhhcc
Confidence 12334444444444443 44555554444 2222211100000
Q ss_pred cchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy17306 197 VTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 276 (904)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (904)
.+ ......|..+.++..+|.++...|++++|+..|++++..+|. +.++..+|.
T Consensus 226 ~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~ 278 (514)
T 2gw1_A 226 NN--------------------------EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMAL 278 (514)
T ss_dssp ST--------------------------TCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred Cc--------------------------cccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHH
Confidence 00 000113677899999999999999999999999999999999 999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHH
Q psy17306 277 ALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNI 356 (904)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (904)
++...|++++|+..+++++...|.++
T Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~~~~~------------------------------------------------------ 304 (514)
T 2gw1_A 279 IMADRNDSTEYYNYFDKALKLDSNNS------------------------------------------------------ 304 (514)
T ss_dssp HHHTSSCCTTGGGHHHHHHTTCTTCT------------------------------------------------------
T ss_pred HHHHCCCHHHHHHHHHHHhhcCcCCH------------------------------------------------------
Confidence 99999999999999999998888661
Q ss_pred HhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcch
Q psy17306 357 KIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTK 436 (904)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~ 436 (904)
T Consensus 305 -------------------------------------------------------------------------------- 304 (514)
T 2gw1_A 305 -------------------------------------------------------------------------------- 304 (514)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHH
Q psy17306 437 ADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYL 516 (904)
Q Consensus 437 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 516 (904)
T Consensus 305 -------------------------------------------------------------------------------- 304 (514)
T 2gw1_A 305 -------------------------------------------------------------------------------- 304 (514)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHH
Q psy17306 517 LDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYK 596 (904)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~ 596 (904)
.++..+|.++...|++++|+..+++ ++..+|.++.++..+|.++.
T Consensus 305 ------------------------~~~~~l~~~~~~~~~~~~A~~~~~~-----------~~~~~~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 305 ------------------------SVYYHRGQMNFILQNYDQAGKDFDK-----------AKELDPENIFPYIQLACLAY 349 (514)
T ss_dssp ------------------------HHHHHHHHHHHHTTCTTHHHHHHHH-----------HHHTCSSCSHHHHHHHHHTT
T ss_pred ------------------------HHHHHHHHHHHHhCCHHHHHHHHHH-----------HHHhChhhHHHHHHHHHHHH
Confidence 1236677788889999999999999 99999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcch------HHHHHHH
Q psy17306 597 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDF------AVAWSNL 670 (904)
Q Consensus 597 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~------~~a~~~l 670 (904)
..|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++ ..|++ ..++..+
T Consensus 350 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-----------~~~~~~~~~~~~~~~~~l 418 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE-----------LENKLDGIYVGIAPLVGK 418 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HHHTSSSCSSCSHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------hhhccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999996665554 44444 3499999
Q ss_pred HHHHHh---CCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHH
Q psy17306 671 GCVFNA---QGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCE 742 (904)
Q Consensus 671 g~~~~~---~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 742 (904)
|.++.. .|++++|+..|++++..+|+++.++..+|.++...|++++|..+|++++...|++.++...+....
T Consensus 419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 419 ATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE 493 (514)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 999999 999999999999999999999999999999999999999999999999999999888777664443
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.1e-35 Score=340.04 Aligned_cols=443 Identities=17% Similarity=0.128 Sum_probs=352.5
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGN 84 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 84 (904)
...+.+++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhH---HHHHHHHHHHcCChH
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCV---RSDLGNLLKALGRLD 161 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~ 161 (904)
++...|++++|+..|+ ++..+|+....+. ..+...+...+|+..+++++...|..... .......+....+..
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLNGDFDGASI---EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHHcCCHHHHHHHHH-HHhcCCCCChHHH---HHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 9999999999999995 8888888766543 24555666788999999998876644211 112223333444444
Q ss_pred HHHHHHH-----------HHHhh--------HHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhH
Q psy17306 162 EAKDLYC-----------VRSDL--------GNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHF 222 (904)
Q Consensus 162 ~A~~~~~-----------~~~~l--------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 222 (904)
.+...+. ....+ +......|++++|+..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~-------------------------------- 225 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMY-------------------------------- 225 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHH--------------------------------
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH--------------------------------
Confidence 4433330 11111 22233334555555555
Q ss_pred HHHHhhcCchhH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 223 STLAIKQNPLLA-------EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295 (904)
Q Consensus 223 ~~~~~~~~~~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 295 (904)
++++..+|+++ .++..+|.++...|++++|+..|++++..+|+ +.++..+|.++...|++++|+..|++++
T Consensus 226 -~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 226 -HSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp -HHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred -HHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 47777777764 46788899999999999999999999999999 9999999999999999999999999999
Q ss_pred hhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchh
Q psy17306 296 QYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVH 375 (904)
Q Consensus 296 ~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (904)
+..|+++
T Consensus 304 ~~~~~~~------------------------------------------------------------------------- 310 (537)
T 3fp2_A 304 DLNPEYP------------------------------------------------------------------------- 310 (537)
T ss_dssp HHCTTCH-------------------------------------------------------------------------
T ss_pred ccCCCCH-------------------------------------------------------------------------
Confidence 9988761
Q ss_pred hHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccc
Q psy17306 376 EAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLH 455 (904)
Q Consensus 376 ~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~ 455 (904)
T Consensus 311 -------------------------------------------------------------------------------- 310 (537)
T 3fp2_A 311 -------------------------------------------------------------------------------- 310 (537)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHH
Q psy17306 456 GIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAA 535 (904)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 535 (904)
T Consensus 311 -------------------------------------------------------------------------------- 310 (537)
T 3fp2_A 311 -------------------------------------------------------------------------------- 310 (537)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 536 ARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 615 (904)
Q Consensus 536 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (904)
.++..+|.++...|++++|+..|++ ++..+|.++.++..+|.++...|++++|+..|+++++.+
T Consensus 311 -----~~~~~l~~~~~~~~~~~~A~~~~~~-----------a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 311 -----PTYYHRGQMYFILQDYKNAKEDFQK-----------AQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHH-----------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 1236778888899999999999999 999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhC----------CCHHHHHH
Q psy17306 616 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQ----------GEIWLAIH 685 (904)
Q Consensus 616 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~----------g~~~~A~~ 685 (904)
|+++.++..+|.++...|++++|+..|+++++..|+. ...-.....++.+|.++... |++++|+.
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~ 449 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ-----EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC-----SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc-----hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHH
Confidence 9999999999999999999999999877777655431 01111234467888999999 99999999
Q ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHH
Q psy17306 686 HFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILE 739 (904)
Q Consensus 686 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~ 739 (904)
.|+++++.+|+++.++..+|.++...|++++|+++|++++...++..+....+.
T Consensus 450 ~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 503 (537)
T 3fp2_A 450 LLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT 503 (537)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHh
Confidence 999999999999999999999999999999999999999999988776655443
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.7e-34 Score=322.00 Aligned_cols=410 Identities=14% Similarity=0.137 Sum_probs=305.9
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q psy17306 23 DYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHA 102 (904)
Q Consensus 23 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 102 (904)
....+...+.+++..+|.++..++.+|.+++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|+++
T Consensus 7 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34566778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChh---hHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHH
Q psy17306 103 VRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLY---CVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKA 179 (904)
Q Consensus 103 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 179 (904)
++.+|+++.++..+|.++...|++++|+..|+++++.+|++. .++..++.++...+ ...+|..+..
T Consensus 87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~ 155 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------LRSQALNAFG 155 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 88777776643222 2233334445
Q ss_pred cCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy17306 180 LGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRH 259 (904)
Q Consensus 180 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 259 (904)
.|++++|+..+. +++...|.++.++..+|.++...|++++|+..|++
T Consensus 156 ~~~~~~A~~~~~---------------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (450)
T 2y4t_A 156 SGDYTAAIAFLD---------------------------------KILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 202 (450)
T ss_dssp HTCHHHHHHHHH---------------------------------HHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHH
T ss_pred cCCHHHHHHHHH---------------------------------HHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555555553 45555566666666666666666666666666666
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchh
Q psy17306 260 AVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLA 339 (904)
Q Consensus 260 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 339 (904)
+++.+|.++.++..+|.++...|++++|+..|++++...|++..
T Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------------------------------------ 246 (450)
T 2y4t_A 203 ASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR------------------------------------ 246 (450)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHH------------------------------------
Confidence 66666666666666666666666666666666666655554400
Q ss_pred hhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHh
Q psy17306 340 SAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKID 419 (904)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (904)
T Consensus 247 -------------------------------------------------------------------------------- 246 (450)
T 2y4t_A 247 -------------------------------------------------------------------------------- 246 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHH
Q psy17306 420 FDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYL 499 (904)
Q Consensus 420 ~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 499 (904)
T Consensus 247 -------------------------------------------------------------------------------- 246 (450)
T 2y4t_A 247 -------------------------------------------------------------------------------- 246 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHH
Q psy17306 500 NELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIK 579 (904)
Q Consensus 500 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~ 579 (904)
.+..++. ..
T Consensus 247 ------------------------------------------~~~~~~~--------------~~--------------- 255 (450)
T 2y4t_A 247 ------------------------------------------CFAHYKQ--------------VK--------------- 255 (450)
T ss_dssp ------------------------------------------HHHHHHH--------------HH---------------
T ss_pred ------------------------------------------HHHHHHH--------------HH---------------
Confidence 0000000 00
Q ss_pred hCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHH
Q psy17306 580 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID----GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLK 655 (904)
Q Consensus 580 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 655 (904)
....+..+|.++...|++++|+..|+++++..|+++. ++..+|.++...|++++|+. .+.+
T Consensus 256 ----~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~-----------~~~~ 320 (450)
T 2y4t_A 256 ----KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR-----------VCSE 320 (450)
T ss_dssp ----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHH-----------HHHH
T ss_pred ----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHH-----------HHHH
Confidence 1223455699999999999999999999999999854 88999999999999999999 6666
Q ss_pred hhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH------------Hhc-----chhHHH
Q psy17306 656 AIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLK------------EAR-----IFDRAN 718 (904)
Q Consensus 656 ~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~------------~~g-----~~~~A~ 718 (904)
+++.+|+++.+|..+|.++...|++++|+..|+++++++|+++.++..++.+.. ..| +.+++.
T Consensus 321 a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~ 400 (450)
T 2y4t_A 321 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII 400 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH
T ss_pred HHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH
Confidence 677789999999999999999999999999999999999999999999996644 344 456778
Q ss_pred HHHHH-hhcccCChhhHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy17306 719 TLFYV-SSYFMITDEDIDVILERCEAKTEELNKKFEQLGES 758 (904)
Q Consensus 719 ~~~~~-a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 758 (904)
+.|++ ++...|+.............++.++.++++.++..
T Consensus 401 ~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~ 441 (450)
T 2y4t_A 401 KAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441 (450)
T ss_dssp HHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence 88886 77776654332232455667788888888887655
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=6.7e-33 Score=309.05 Aligned_cols=244 Identities=17% Similarity=0.168 Sum_probs=225.7
Q ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHH
Q psy17306 2 NDIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSN 81 (904)
Q Consensus 2 ~~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 81 (904)
+..|..+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++.+|++..++..
T Consensus 20 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 99 (450)
T 2y4t_A 20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99 (450)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHhcCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCChhhH
Q psy17306 82 LGNVYKERGQLQEALENYRHAVRLKPDFI---DGYINL------------AAALVAAGDMEQAVQAYVTALQYNPDLYCV 146 (904)
Q Consensus 82 la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 146 (904)
+|.++...|++++|+..|++++..+|.+. .++..+ |.++...|++++|+..|+++++.+|.+..+
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 179 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999999999999988 776555 667999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHH
Q psy17306 147 RSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLA 226 (904)
Q Consensus 147 ~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 226 (904)
+..+|.++...|++++|+..+ .++
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~--------------------------------------------------------~~~ 203 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDL--------------------------------------------------------KAA 203 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHH--------------------------------------------------------HHH
T ss_pred HHHHHHHHHHCCCHHHHHHHH--------------------------------------------------------HHH
Confidence 999999999999999999888 677
Q ss_pred hhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHH
Q psy17306 227 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL------------AAALVAAGDMEQAVQAYVTA 294 (904)
Q Consensus 227 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~a 294 (904)
+..+|.++.++..+|.++...|++++|+..|++++..+|++...+..+ |.++...|++++|+..|+++
T Consensus 204 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 283 (450)
T 2y4t_A 204 SKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 283 (450)
T ss_dssp HHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888899999999999999999999999999999999999999887766 78888888888888888888
Q ss_pred HhhCCCc
Q psy17306 295 LQYNPLL 301 (904)
Q Consensus 295 l~~~p~~ 301 (904)
++..|++
T Consensus 284 l~~~p~~ 290 (450)
T 2y4t_A 284 MKTEPSI 290 (450)
T ss_dssp HHHCCSS
T ss_pred HhcCCcc
Confidence 8877765
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=7.1e-34 Score=324.93 Aligned_cols=436 Identities=16% Similarity=0.162 Sum_probs=342.1
Q ss_pred HHHHHHHHHHHhhCCC----CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHH
Q psy17306 25 ESAERHCMQLWRQETN----NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYR 100 (904)
Q Consensus 25 ~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 100 (904)
+.+...+..+....+. .+..+..+|.+++..|++++|+..|++++..+|+++.++..+|.++..+|++++|+..|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 83 (537)
T 3fp2_A 4 MNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTT 83 (537)
T ss_dssp ----CCHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCchHHhhcCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444454444433 468899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhh-------
Q psy17306 101 HAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDL------- 173 (904)
Q Consensus 101 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l------- 173 (904)
+++..+|+++.++..+|.++...|++++|+..|+ ++..+|+....+.. .+...+...+|+..+......
T Consensus 84 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 159 (537)
T 3fp2_A 84 KALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIE---PMLERNLNKQAMKVLNENLSKDEGRGSQ 159 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------C
T ss_pred HHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHH---HHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 9999999999999999999999999999999996 88888876554321 233333344555555211110
Q ss_pred -------HHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHH-----
Q psy17306 174 -------GNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLG----- 241 (904)
Q Consensus 174 -------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg----- 241 (904)
...+....+...++..+. +.....+........++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~l~~~~~~ 206 (537)
T 3fp2_A 160 VLPSNTSLASFFGIFDSHLEVSSVN---------------------------------TSSNYDTAYALLSDALQRLYSA 206 (537)
T ss_dssp CCCCHHHHHHHHHTSCHHHHHHTSC---------------------------------CCCSSCSSHHHHHHHHHHHHTC
T ss_pred ccchHhHHHHHHHhcChHHHHHHHh---------------------------------hccccccHHHHHHHHHHHHHHh
Confidence 111222222222222222 22222333333333333
Q ss_pred ---HHHHHhCCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCc
Q psy17306 242 ---NVYKERGQLQEALENYRHAVRLKPDFID-------GYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEP 311 (904)
Q Consensus 242 ---~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 311 (904)
......|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..|+++++..|+.
T Consensus 207 ~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~---------- 276 (537)
T 3fp2_A 207 TDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP---------- 276 (537)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH----------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCc----------
Confidence 3334457899999999999999999865 57788889999999999999999999887753
Q ss_pred ccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhccccc
Q psy17306 312 FVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEP 391 (904)
Q Consensus 312 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 391 (904)
T Consensus 277 -------------------------------------------------------------------------------- 276 (537)
T 3fp2_A 277 -------------------------------------------------------------------------------- 276 (537)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCccccc
Q psy17306 392 NGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIP 471 (904)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 471 (904)
T Consensus 277 -------------------------------------------------------------------------------- 276 (537)
T 3fp2_A 277 -------------------------------------------------------------------------------- 276 (537)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHh
Q psy17306 472 GKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTR 551 (904)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 551 (904)
.++..+|.++.
T Consensus 277 ---------------------------------------------------------------------~~~~~l~~~~~ 287 (537)
T 3fp2_A 277 ---------------------------------------------------------------------NSYIFLALTLA 287 (537)
T ss_dssp ---------------------------------------------------------------------HHHHHHHHHTC
T ss_pred ---------------------------------------------------------------------hHHHHHHHHHH
Confidence 12256677788
Q ss_pred hcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy17306 552 EGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 631 (904)
Q Consensus 552 ~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 631 (904)
..|++++|+..+++ ++..+|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..
T Consensus 288 ~~~~~~~A~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 356 (537)
T 3fp2_A 288 DKENSQEFFKFFQK-----------AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK 356 (537)
T ss_dssp CSSCCHHHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHH-----------HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 89999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH------HHHHHH
Q psy17306 632 AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD------AYINLG 705 (904)
Q Consensus 632 ~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------a~~~la 705 (904)
.|++++|+. .+.++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++. .+..+|
T Consensus 357 ~g~~~~A~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a 425 (537)
T 3fp2_A 357 QGKFTESEA-----------FFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKA 425 (537)
T ss_dssp TTCHHHHHH-----------HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHH
T ss_pred cCCHHHHHH-----------HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH
Confidence 999999999 666666778889999999999999999999999999999999877644 366778
Q ss_pred HHHHHh----------cchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy17306 706 NVLKEA----------RIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKFEQLGES 758 (904)
Q Consensus 706 ~~~~~~----------g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 758 (904)
.++... |++++|+.+|++++...|++..+...++.+....+++.++++.+...
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999 99999999999999999999999999999999999998888776544
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-33 Score=319.51 Aligned_cols=434 Identities=16% Similarity=0.138 Sum_probs=348.1
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy17306 41 NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 120 (904)
Q Consensus 41 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 120 (904)
.+..+..+|.+++..|++++|+..|++++..+| ++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999 5899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHH----------
Q psy17306 121 VAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLH---------- 190 (904)
Q Consensus 121 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~---------- 190 (904)
..+|++++|+..|++++..+|.+......+............+...+ +.++.+...-
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------------~~~~~~~~~~~~~~~~~~~~ 150 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKF-------------GDIDTATATPTELSTQPAKE 150 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhhhhccCChhhH
Confidence 99999999999999999999876554433333222221111111110 1111110000
Q ss_pred -hhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHH---hCCHHHHHHHHHHHHh----
Q psy17306 191 -TENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE---RGQLQEALENYRHAVR---- 262 (904)
Q Consensus 191 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~---- 262 (904)
.......+.................. ..-..|.++..+..+|.++.. .|++++|+..|++++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 221 (514)
T 2gw1_A 151 RKDKQENLPSVTSMASFFGIFKPELTF---------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221 (514)
T ss_dssp ------CCCCHHHHHHHHTTSCCCCCC---------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccCCchhHHHHHHHhhcCHHHHH---------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhh
Confidence 00000000000000000000000000 001126678899999999887 8999999999999999
Q ss_pred -h--C-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhccc
Q psy17306 263 -L--K-------PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMK 332 (904)
Q Consensus 263 -~--~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 332 (904)
+ + |.++.++..+|.++...|++++|+..|+++++..|+ .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~------------------------------ 270 (514)
T 2gw1_A 222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-V------------------------------ 270 (514)
T ss_dssp HTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-H------------------------------
T ss_pred hhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-H------------------------------
Confidence 5 4 444678999999999999999999999999987764 1
Q ss_pred ccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHH
Q psy17306 333 RPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEE 412 (904)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (904)
T Consensus 271 -------------------------------------------------------------------------------- 270 (514)
T 2gw1_A 271 -------------------------------------------------------------------------------- 270 (514)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhH
Q psy17306 413 QFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVE 492 (904)
Q Consensus 413 ~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (904)
T Consensus 271 -------------------------------------------------------------------------------- 270 (514)
T 2gw1_A 271 -------------------------------------------------------------------------------- 270 (514)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhh
Q psy17306 493 KYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAH 572 (904)
Q Consensus 493 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~ 572 (904)
.++..+|.++...|++++|+..+++
T Consensus 271 ------------------------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~------- 295 (514)
T 2gw1_A 271 ------------------------------------------------NSYIYMALIMADRNDSTEYYNYFDK------- 295 (514)
T ss_dssp ------------------------------------------------HHHHHHHHHHHTSSCCTTGGGHHHH-------
T ss_pred ------------------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHH-------
Confidence 1236677788889999999999999
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhh
Q psy17306 573 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSC 652 (904)
Q Consensus 573 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 652 (904)
++..+|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+. .
T Consensus 296 ----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-----------~ 360 (514)
T 2gw1_A 296 ----ALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCET-----------L 360 (514)
T ss_dssp ----HHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHH-----------H
T ss_pred ----HhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHH-----------H
Confidence 9999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred HHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHH---hcchhHHHHHHHH
Q psy17306 653 YLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD------AYINLGNVLKE---ARIFDRANTLFYV 723 (904)
Q Consensus 653 ~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------a~~~la~~~~~---~g~~~~A~~~~~~ 723 (904)
+.+++...|+++.++..+|.++...|++++|+..|++++..+|.++. ++..+|.++.. .|++++|+.+|++
T Consensus 361 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~ 440 (514)
T 2gw1_A 361 FSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEK 440 (514)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH
Confidence 66666778888899999999999999999999999999999998865 99999999999 9999999999999
Q ss_pred hhcccCChhhHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy17306 724 SSYFMITDEDIDVILERCEAKTEELNKKFEQLGES 758 (904)
Q Consensus 724 a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 758 (904)
++...+++..+...++.+....+++.++++.+...
T Consensus 441 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 441 ASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999999888888776544
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=2.2e-31 Score=286.80 Aligned_cols=216 Identities=17% Similarity=0.166 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 121 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 121 (904)
++.++.+|.+++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 45666666666666666666666666666666666677777777777777777777777777777766667777777777
Q ss_pred HcCCHHHHHHHHHHHHhcCC---ChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcc
Q psy17306 122 AAGDMEQAVQAYVTALQYNP---DLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVT 198 (904)
Q Consensus 122 ~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 198 (904)
..|++++|+..|+++++.+| ++..++..++.++.. .....+|..+...|++++|+..+.
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~a~~~~~~~~~~~A~~~~~------- 144 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM-----------QRLRSQALDAFDGADYTAAITFLD------- 144 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHTTCHHHHHHHHH-------
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHH-----------HHHHHHHHHHHHccCHHHHHHHHH-------
Confidence 77777777777777777777 666666666544321 122334445555555555555554
Q ss_pred hhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy17306 199 MKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 278 (904)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 278 (904)
+++...|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus 145 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 145 --------------------------KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY 198 (359)
T ss_dssp --------------------------HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred --------------------------HHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 777788888888889999999999999999999999998888889999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 279 VAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 279 ~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
...|++++|+..++++++..|++
T Consensus 199 ~~~~~~~~A~~~~~~a~~~~~~~ 221 (359)
T 3ieg_A 199 YQLGDHELSLSEVRECLKLDQDH 221 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHcCCHHHHHHHHHHHHhhCccc
Confidence 99999999999999988888877
No 12
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=309.18 Aligned_cols=411 Identities=13% Similarity=-0.036 Sum_probs=289.2
Q ss_pred cCCHHHHHHHHHHHHh----hC--CCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc---------CcccHHHHHHHHHH
Q psy17306 21 AGDYESAERHCMQLWR----QE--TNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ---------NPLLAEAYSNLGNV 85 (904)
Q Consensus 21 ~g~~~~A~~~~~~~l~----~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~ 85 (904)
.++.+.++..+++.+. .. +..+..+..+|.++...|++++|++.|++++++ +|....++.++|.+
T Consensus 24 l~~~~~~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~ 103 (472)
T 4g1t_A 24 LMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWV 103 (472)
T ss_dssp TTTTCCCHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH
Confidence 3445555555554443 22 234667889999999999999999999999886 56678899999999
Q ss_pred HHHhCcHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy17306 86 YKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAG--DMEQAVQAYVTALQYNPDLYCVRSDLGNLLK 155 (904)
Q Consensus 86 ~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 155 (904)
|..+|++++|+.+|++++.+. +..+.++..+|.++...| ++++|+.+|+++++++|+++.++..++.++.
T Consensus 104 y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~ 183 (472)
T 4g1t_A 104 YYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASY 183 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999863 456788888888887754 6999999999999999999999999988865
Q ss_pred H---cCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCch
Q psy17306 156 A---LGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL 232 (904)
Q Consensus 156 ~---~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 232 (904)
. .++.++|+..+ ++++..+|.
T Consensus 184 ~l~~~~~~~~al~~~--------------------------------------------------------~~al~l~p~ 207 (472)
T 4g1t_A 184 RLDNWPPSQNAIDPL--------------------------------------------------------RQAIRLNPD 207 (472)
T ss_dssp HHHHSCCCCCTHHHH--------------------------------------------------------HHHHHHCSS
T ss_pred HhcCchHHHHHHHHH--------------------------------------------------------HHHhhcCCc
Confidence 4 35555565555 688899999
Q ss_pred hHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCC
Q psy17306 233 LAEAYSNLGNVYKE----RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWN 308 (904)
Q Consensus 233 ~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 308 (904)
++.++..+|..+.. .|++++|+.++++++..+|.++.++..+|.++...|++++|+..|+++++..|++
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------- 280 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN------- 280 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCh-------
Confidence 99999988877655 4678899999999999999999999999999999999999999999999999988
Q ss_pred CCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcc
Q psy17306 309 TEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQL 388 (904)
Q Consensus 309 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 388 (904)
+.++..+|.+
T Consensus 281 ----------------------------------------------------------------------~~~~~~lg~~ 290 (472)
T 4g1t_A 281 ----------------------------------------------------------------------AYLHCQIGCC 290 (472)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Confidence 2223333332
Q ss_pred cccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcc
Q psy17306 389 VEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKT 468 (904)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 468 (904)
+...+ . .....
T Consensus 291 y~~~~----------------------------~--~~~~~--------------------------------------- 301 (472)
T 4g1t_A 291 YRAKV----------------------------F--QVMNL--------------------------------------- 301 (472)
T ss_dssp HHHHH----------------------------H--HHHHC---------------------------------------
T ss_pred HHHHH----------------------------H--HhhhH---------------------------------------
Confidence 20000 0 00000
Q ss_pred cccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCch
Q psy17306 469 VIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPD 548 (904)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 548 (904)
.....+.
T Consensus 302 -------------------------------------------------------------------------~~~~~~~ 308 (472)
T 4g1t_A 302 -------------------------------------------------------------------------RENGMYG 308 (472)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 0011111
Q ss_pred hHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH---HHHHH
Q psy17306 549 LTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID---GYINL 625 (904)
Q Consensus 549 ~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~l 625 (904)
.....+.++.|+..+++ ++..+|.++.++..+|.++...|++++|+.+|+++++++|++.. ++.++
T Consensus 309 ~~~~~~~~~~A~~~~~~-----------a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~ 377 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKK-----------ADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRY 377 (472)
T ss_dssp HHHHHHHHHHHHHHHHH-----------HHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHH-----------HhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 22223345677777777 88999999999999999999999999999999999998887643 45667
Q ss_pred HHH-HHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHH
Q psy17306 626 AAA-LVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704 (904)
Q Consensus 626 g~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 704 (904)
|.+ +...|++++|+..|++++ +++|+...... ....+...+++++..+|+++.++.+|
T Consensus 378 ~~~~~~~~~~~~~Ai~~y~kal-----------~i~~~~~~~~~----------~~~~l~~~~~~~l~~~p~~~~~~~~L 436 (472)
T 4g1t_A 378 GNFQLYQMKCEDKAIHHFIEGV-----------KINQKSREKEK----------MKDKLQKIAKMRLSKNGADSEALHVL 436 (472)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHH-----------HSCCCCHHHHH----------HHHHHHHHHHHHHHHCC-CTTHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH-----------hcCcccHHHHH----------HHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 765 456789999999555444 45555433221 22445667788888888888888888
Q ss_pred HHHHHHhcchhHHHHHHHHhhcccCChhhHHHHH
Q psy17306 705 GNVLKEARIFDRANTLFYVSSYFMITDEDIDVIL 738 (904)
Q Consensus 705 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 738 (904)
|.+|..+|++++|+++|++|++..+..++....+
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHCC-----------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 8888888888888888888888877665554433
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=6.5e-31 Score=283.19 Aligned_cols=325 Identities=16% Similarity=0.125 Sum_probs=302.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYK 87 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 87 (904)
...++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|++..++..+|.++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCcHHHHHHHHHHHHhcCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy17306 88 ERGQLQEALENYRHAVRLKP---DFIDGYINL------------AAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGN 152 (904)
Q Consensus 88 ~~g~~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 152 (904)
..|++++|+..|++++..+| +++.++..+ |.++...|++++|+..++++++.+|+++.++..+|.
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 162 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999 888888777 799999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCch
Q psy17306 153 LLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL 232 (904)
Q Consensus 153 ~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 232 (904)
++...|++++|+..+ .+++...|.
T Consensus 163 ~~~~~~~~~~A~~~~--------------------------------------------------------~~~~~~~~~ 186 (359)
T 3ieg_A 163 CFIKEGEPRKAISDL--------------------------------------------------------KAASKLKSD 186 (359)
T ss_dssp HHHHTTCHHHHHHHH--------------------------------------------------------HHHHTTCSC
T ss_pred HHHHCCCHHHHHHHH--------------------------------------------------------HHHHHhCCC
Confidence 999999999998888 688889999
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17306 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI------------NLAAALVAAGDMEQAVQAYVTALQYNPL 300 (904)
Q Consensus 233 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~p~ 300 (904)
++.++..+|.++...|++++|+..|+++++.+|++..++. .+|.++...|++++|+..++++++..|+
T Consensus 187 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 266 (359)
T 3ieg_A 187 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 266 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999988654 4488899999999999999999999987
Q ss_pred cccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHH
Q psy17306 301 LKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTD 380 (904)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (904)
++.
T Consensus 267 ~~~----------------------------------------------------------------------------- 269 (359)
T 3ieg_A 267 VAE----------------------------------------------------------------------------- 269 (359)
T ss_dssp SHH-----------------------------------------------------------------------------
T ss_pred chH-----------------------------------------------------------------------------
Confidence 710
Q ss_pred HHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCcccccccccc
Q psy17306 381 LIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGA 460 (904)
Q Consensus 381 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 460 (904)
T Consensus 270 -------------------------------------------------------------------------------- 269 (359)
T 3ieg_A 270 -------------------------------------------------------------------------------- 269 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHH
Q psy17306 461 FSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATK 540 (904)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 540 (904)
...
T Consensus 270 -----------------------------------------------------------------------------~~~ 272 (359)
T 3ieg_A 270 -----------------------------------------------------------------------------YTV 272 (359)
T ss_dssp -----------------------------------------------------------------------------HHH
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 000
Q ss_pred HHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q psy17306 541 YVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 620 (904)
Q Consensus 541 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (904)
.++..+|.++...|++++|+..+++ ++..+|+++.+++.+|.++...|++++|+..|+++++++|++..
T Consensus 273 ~~~~~la~~~~~~~~~~~A~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 273 RSKERICHCFSKDEKPVEAIRICSE-----------VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHH-----------HHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence 1236678888999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q psy17306 621 GYINLAAALVAAG 633 (904)
Q Consensus 621 a~~~lg~~~~~~g 633 (904)
++..++.++...+
T Consensus 342 ~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 342 IREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877654
No 14
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=284.37 Aligned_cols=378 Identities=15% Similarity=0.026 Sum_probs=276.9
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC---
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQ---------ETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQN--- 72 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 72 (904)
+..+..+..+|.++...|++++|++.|+++++. +|....++..+|.+|...|++++|+.++++++++.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344566788999999999999999999999875 56778889999999999999999999999999863
Q ss_pred -----cccHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCC
Q psy17306 73 -----PLLAEAYSNLGNVYKER--GQLQEALENYRHAVRLKPDFIDGYINLAAALVA---AGDMEQAVQAYVTALQYNPD 142 (904)
Q Consensus 73 -----p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~ 142 (904)
+..+.++..+|.++... ++|++|+.+|+++++++|+++.++..+|.++.. .++.++|+..++++++++|+
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 34578888888887765 579999999999999999999999999988654 57788999999999999999
Q ss_pred hhhHHHHHHHHHHHcC----ChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHH
Q psy17306 143 LYCVRSDLGNLLKALG----RLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLE 218 (904)
Q Consensus 143 ~~~~~~~la~~~~~~~----~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (904)
++.++..+|..+...+ ++++|...+
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~--------------------------------------------------- 236 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLV--------------------------------------------------- 236 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHH---------------------------------------------------
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHH---------------------------------------------------
Confidence 9999988887776554 444555544
Q ss_pred HhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----------------
Q psy17306 219 SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG---------------- 282 (904)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------- 282 (904)
++++..+|..+.++..+|.++...|++++|+..|+++++.+|+++.++..+|.+|...+
T Consensus 237 -----~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~ 311 (472)
T 4g1t_A 237 -----EEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK 311 (472)
T ss_dssp -----HHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHH
T ss_pred -----HHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 58889999999999999999999999999999999999999999999999999986532
Q ss_pred ---CHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhh
Q psy17306 283 ---DMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIE 359 (904)
Q Consensus 283 ---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (904)
.+++|+..+++++..+|...
T Consensus 312 ~~~~~~~A~~~~~~a~~~~~~~~--------------------------------------------------------- 334 (472)
T 4g1t_A 312 LLELIGHAVAHLKKADEANDNLF--------------------------------------------------------- 334 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTC---------------------------------------------------------
T ss_pred HHhhHHHHHHHHHHHhhcCCchh---------------------------------------------------------
Confidence 34566666666666666551
Q ss_pred hccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhh
Q psy17306 360 CASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKAD 438 (904)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~ 438 (904)
.....++.++...|+ +++|+..|++++.. |....
T Consensus 335 -------------~~~~~lg~~~~~~~~------------------------------~~~A~~~~~kaL~~~~~~~~-- 369 (472)
T 4g1t_A 335 -------------RVCSILASLHALADQ------------------------------YEEAEYYFQKEFSKELTPVA-- 369 (472)
T ss_dssp -------------CCHHHHHHHHHHTTC------------------------------HHHHHHHHHHHHHSCCCHHH--
T ss_pred -------------hhhhhHHHHHHHhcc------------------------------HHHHHHHHHHHHhcCCCChH--
Confidence 123333444444444 66677777776655 22111
Q ss_pred hHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHh
Q psy17306 439 KTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLD 518 (904)
Q Consensus 439 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 518 (904)
T Consensus 370 -------------------------------------------------------------------------------- 369 (472)
T 4g1t_A 370 -------------------------------------------------------------------------------- 369 (472)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCcchHHHHHHHHHHHhhCchh-HhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHH
Q psy17306 519 SGKSWRTNPEHPNYVAAARATKYVYNVEPDL-TREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE 597 (904)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~ 597 (904)
.. .++..+|.+ ....|++++|+..|++ ++.+.|.+.....
T Consensus 370 -------------~~-------~~~~~~~~~~~~~~~~~~~Ai~~y~k-----------al~i~~~~~~~~~-------- 410 (472)
T 4g1t_A 370 -------------KQ-------LLHLRYGNFQLYQMKCEDKAIHHFIE-----------GVKINQKSREKEK-------- 410 (472)
T ss_dssp -------------HH-------HHHHHHHHHHHHTSSCHHHHHHHHHH-----------HHHSCCCCHHHHH--------
T ss_pred -------------HH-------HHHHHHHHHHHHHCCCHHHHHHHHHH-----------HHhcCcccHHHHH--------
Confidence 10 112333432 4567899999999999 9999998754332
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHH
Q psy17306 598 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGC 672 (904)
Q Consensus 598 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~ 672 (904)
....+...++++++.+|+++.++.++|.+|..+|++++|++ +|+++++..|.+|.+...+|.
T Consensus 411 --~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~-----------~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 411 --MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE-----------DSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp --HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------------------
T ss_pred --HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHhcCCCCCcHhhcCCC
Confidence 23455677889999999999999999999999999999999 666777777888888877763
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.97 E-value=3.7e-27 Score=264.56 Aligned_cols=399 Identities=18% Similarity=0.136 Sum_probs=287.2
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----hCcHHHHHH
Q psy17306 26 SAERHCMQLWRQETNNTGVLLLLSSIHFQ----CRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE----RGQLQEALE 97 (904)
Q Consensus 26 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 97 (904)
.++..+.++. .+.++.+++.+|.+|.. .+++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+.
T Consensus 25 ~~~~~~~~~a--~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 25 VNLEQLKQKA--ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CCHHHHHHHH--HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 3455565554 35678888888888887 78888888888888875 567788888888888 888888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH----cCChHHHHHHHHH
Q psy17306 98 NYRHAVRLKPDFIDGYINLAAALVA----AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKA----LGRLDEAKDLYCV 169 (904)
Q Consensus 98 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~ 169 (904)
+|+++.+. .++.++..+|.+|.. .+++++|+.+|+++.+. +++.++..+|.+|.. .+++++|+..|
T Consensus 101 ~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~-- 174 (490)
T 2xm6_A 101 WYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWY-- 174 (490)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH--
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH--
Confidence 88888765 467888888888888 78888888888888764 467788888888887 77888888887
Q ss_pred HHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHH---
Q psy17306 170 RSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE--- 246 (904)
Q Consensus 170 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~--- 246 (904)
+++... .++.+++.+|.+|..
T Consensus 175 ------------------------------------------------------~~a~~~--~~~~a~~~Lg~~y~~g~g 198 (490)
T 2xm6_A 175 ------------------------------------------------------SKAAEQ--GNVWSCNQLGYMYSRGLG 198 (490)
T ss_dssp ------------------------------------------------------HHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred ------------------------------------------------------HHHHHC--CCHHHHHHHHHHHhcCCC
Confidence 344433 356777888888877
Q ss_pred -hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHH
Q psy17306 247 -RGQLQEALENYRHAVRLKPDFIDGYINLAAALVA----AGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKA 321 (904)
Q Consensus 247 -~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a 321 (904)
.+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+|+++++..+..
T Consensus 199 ~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~-------------------- 256 (490)
T 2xm6_A 199 VERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSI-------------------- 256 (490)
T ss_dssp SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHH--------------------
T ss_pred CCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH--------------------
Confidence 78888888888887765 457778888888876 778888888888877653321
Q ss_pred HHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccc
Q psy17306 322 LWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIY 401 (904)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 401 (904)
+.+.+|.++......
T Consensus 257 -----------------------------------------------------------a~~~lg~~y~~g~~~------ 271 (490)
T 2xm6_A 257 -----------------------------------------------------------AQFRLGYILEQGLAG------ 271 (490)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHTTTS------
T ss_pred -----------------------------------------------------------HHHHHHHHHHCCCCC------
Confidence 112222211110000
Q ss_pred cccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhc
Q psy17306 402 KDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIR 481 (904)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (904)
..+.++|+..|+++++.
T Consensus 272 -------------~~d~~~A~~~~~~a~~~-------------------------------------------------- 288 (490)
T 2xm6_A 272 -------------AKEPLKALEWYRKSAEQ-------------------------------------------------- 288 (490)
T ss_dssp -------------SCCHHHHHHHHHHHHTT--------------------------------------------------
T ss_pred -------------CCCHHHHHHHHHHHHHc--------------------------------------------------
Confidence 00044455555554432
Q ss_pred ccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhc-----CCh
Q psy17306 482 IVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREG-----GSI 556 (904)
Q Consensus 482 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~ 556 (904)
.++. ++..+|.++... +++
T Consensus 289 ----------------------------------------------~~~~----------a~~~Lg~~y~~~~~g~~~~~ 312 (490)
T 2xm6_A 289 ----------------------------------------------GNSD----------GQYYLAHLYDKGAEGVAKNR 312 (490)
T ss_dssp ----------------------------------------------TCHH----------HHHHHHHHHHHCBTTBCCCH
T ss_pred ----------------------------------------------CCHH----------HHHHHHHHHHcCCCCCcCCH
Confidence 0111 125566666665 889
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH--
Q psy17306 557 PITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG---QLQEALENYRHAVRLKPDFIDGYINLAAALVA-- 631 (904)
Q Consensus 557 ~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-- 631 (904)
++|+.+|++ +++.. ++.+++++|.+|...| ++++|+.+|+++++. +++.+++++|.+|..
T Consensus 313 ~~A~~~~~~-----------a~~~~--~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~ 377 (490)
T 2xm6_A 313 EQAISWYTK-----------SAEQG--DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGK 377 (490)
T ss_dssp HHHHHHHHH-----------HHHTT--CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHH-----------HHhcC--CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCC
Confidence 999999988 76653 4678899999998866 788999999999887 568899999999998
Q ss_pred --cCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcC---cCcHHHHH
Q psy17306 632 --AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNA----QGEIWLAIHHFEKAVSLD---PNFLDAYI 702 (904)
Q Consensus 632 --~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~---p~~~~a~~ 702 (904)
.+++++|+.+|+++ ++. .++.++++||.+|.. .+++++|+.+|++|++.+ |.++.+..
T Consensus 378 g~~~~~~~A~~~~~~A-----------~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~ 444 (490)
T 2xm6_A 378 GVKKDEQQAAIWMRKA-----------AEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNI 444 (490)
T ss_dssp SSCCCHHHHHHHHHHH-----------HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-----------HhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHH
Confidence 88999999955544 333 347889999999998 899999999999999998 45888888
Q ss_pred HHHHHHHHhcchhH--HHHHHHHh
Q psy17306 703 NLGNVLKEARIFDR--ANTLFYVS 724 (904)
Q Consensus 703 ~la~~~~~~g~~~~--A~~~~~~a 724 (904)
++|.++.......+ |..+|+++
T Consensus 445 ~l~~~~~~~~~~a~~~a~~~~~~~ 468 (490)
T 2xm6_A 445 TEKKLTAKQLQQAELLSQQYIEKY 468 (490)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHhHHHHHHHHHHHHHHHH
Confidence 88888765433222 44444443
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.1e-28 Score=262.15 Aligned_cols=310 Identities=16% Similarity=0.139 Sum_probs=274.9
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCH
Q psy17306 31 CMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 110 (904)
Q Consensus 31 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 110 (904)
....+...|.++..+..+|..++..|++++|+..|++++..+|.+..++..++.++...|++++|+..+++++..+|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 34556667888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHH
Q psy17306 111 DGYINLAAALVAAG-DMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNL 189 (904)
Q Consensus 111 ~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~ 189 (904)
.++..+|.++...| ++++|+..++++++.+|+++.++..+|.++...|++++|+..+
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~---------------------- 148 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAY---------------------- 148 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHH----------------------
Confidence 99999999999999 9999999999999999999999999999999999999998888
Q ss_pred HhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH
Q psy17306 190 HTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 269 (904)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 269 (904)
.+++...|.+...+..+|.++...|++++|+..|++++..+|+++.
T Consensus 149 ----------------------------------~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 194 (330)
T 3hym_B 149 ----------------------------------FTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF 194 (330)
T ss_dssp ----------------------------------HHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred ----------------------------------HHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChH
Confidence 6888888988899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhh
Q psy17306 270 GYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQ 349 (904)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (904)
++..+|.++...|++++|+..++++++..|......
T Consensus 195 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-------------------------------------------- 230 (330)
T 3hym_B 195 VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEV-------------------------------------------- 230 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSC--------------------------------------------
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccc--------------------------------------------
Confidence 999999999999999999999999998876551000
Q ss_pred hhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhh
Q psy17306 350 EKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAI 429 (904)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 429 (904)
T Consensus 231 -------------------------------------------------------------------------------- 230 (330)
T 3hym_B 231 -------------------------------------------------------------------------------- 230 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcCh
Q psy17306 430 DHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSP 509 (904)
Q Consensus 430 ~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 509 (904)
T Consensus 231 -------------------------------------------------------------------------------- 230 (330)
T 3hym_B 231 -------------------------------------------------------------------------------- 230 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHH
Q psy17306 510 NKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYS 589 (904)
Q Consensus 510 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~ 589 (904)
..|..+ .++..+|.++...|++++|+..+++ ++..+|+++.++.
T Consensus 231 ---------------~~~~~~----------~~~~~la~~~~~~g~~~~A~~~~~~-----------a~~~~~~~~~~~~ 274 (330)
T 3hym_B 231 ---------------TVDKWE----------PLLNNLGHVCRKLKKYAEALDYHRQ-----------ALVLIPQNASTYS 274 (330)
T ss_dssp ---------------TTTTCC----------HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHSTTCSHHHH
T ss_pred ---------------cccHHH----------HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHhhCccchHHHH
Confidence 001111 1347889999999999999999999 9999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH-HHcCCHH
Q psy17306 590 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL-VAAGDME 636 (904)
Q Consensus 590 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~-~~~g~~~ 636 (904)
.+|.++...|++++|+..|+++++++|+++.++..+|.++ ...|+.+
T Consensus 275 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 275 AIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999999999999999999999999999998 5566543
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.1e-28 Score=262.21 Aligned_cols=299 Identities=16% Similarity=0.103 Sum_probs=245.5
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHc
Q psy17306 101 HAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKAL 180 (904)
Q Consensus 101 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 180 (904)
..+...|.++..+..+|..+...|++++|+..++++++.+|.+..++..++.++...|++++|+..+
T Consensus 13 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~------------- 79 (330)
T 3hym_B 13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLS------------- 79 (330)
T ss_dssp -------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHH-------------
T ss_pred HHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHH-------------
Confidence 4444556667777778888888888888888888888888877777777777777777777777776
Q ss_pred CCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhC-CHHHHHHHHHH
Q psy17306 181 GRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERG-QLQEALENYRH 259 (904)
Q Consensus 181 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~ 259 (904)
.+++..+|.++.++..+|.++...| ++++|+.+|++
T Consensus 80 -------------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 116 (330)
T 3hym_B 80 -------------------------------------------HKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSK 116 (330)
T ss_dssp -------------------------------------------HHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred -------------------------------------------HHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5667777777888888888888888 88888888888
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchh
Q psy17306 260 AVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLA 339 (904)
Q Consensus 260 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 339 (904)
++..+|.++.++..+|.++...|++++|+..++++++..|+..
T Consensus 117 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------------------------------- 159 (330)
T 3hym_B 117 ATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH------------------------------------- 159 (330)
T ss_dssp HHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS-------------------------------------
T ss_pred HHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH-------------------------------------
Confidence 8888888888899999999999999999999998888887661
Q ss_pred hhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHh
Q psy17306 340 SAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKID 419 (904)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (904)
T Consensus 160 -------------------------------------------------------------------------------- 159 (330)
T 3hym_B 160 -------------------------------------------------------------------------------- 159 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHH
Q psy17306 420 FDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYL 499 (904)
Q Consensus 420 ~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 499 (904)
T Consensus 160 -------------------------------------------------------------------------------- 159 (330)
T 3hym_B 160 -------------------------------------------------------------------------------- 159 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHH
Q psy17306 500 NELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIK 579 (904)
Q Consensus 500 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~ 579 (904)
.++..+|.++...|++++|+..+++ ++.
T Consensus 160 -----------------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~-----------al~ 187 (330)
T 3hym_B 160 -----------------------------------------LPMLYIGLEYGLTNNSKLAERFFSQ-----------ALS 187 (330)
T ss_dssp -----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHT
T ss_pred -----------------------------------------HHHHHHHHHHHHHhhHHHHHHHHHH-----------HHH
Confidence 0124467777788888999999888 888
Q ss_pred hCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCh
Q psy17306 580 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK---------PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 650 (904)
Q Consensus 580 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 650 (904)
.+|.++.++..+|.++...|++++|+..|+++++.. |..+.++.++|.++...|++++|+.
T Consensus 188 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~---------- 257 (330)
T 3hym_B 188 IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD---------- 257 (330)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH----------
T ss_pred hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH----------
Confidence 889999999999999999999999999999999886 6677899999999999999999999
Q ss_pred hhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH-HHhcchh
Q psy17306 651 SCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL-KEARIFD 715 (904)
Q Consensus 651 ~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~-~~~g~~~ 715 (904)
.+.++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..+|.++ ...|+.+
T Consensus 258 -~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 258 -YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp -HHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred -HHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 666666677888899999999999999999999999999999999999999999988 4555543
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=1.1e-28 Score=266.94 Aligned_cols=329 Identities=19% Similarity=0.191 Sum_probs=253.9
Q ss_pred HhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCChh----hHHHHHHHHHHHcCChHH
Q psy17306 88 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ-AYVTALQYNPDLY----CVRSDLGNLLKALGRLDE 162 (904)
Q Consensus 88 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~ 162 (904)
..+.|..+...++.+....|. ++...|++++|+. .|++++...|+++ ..++.+|.++...|++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRDAE----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN 82 (368)
T ss_dssp -------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH
T ss_pred CcccHHHHHHHHHHHHcCCch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH
Confidence 334444455555554444433 4555688888888 8888888887764 557888888888888888
Q ss_pred HHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHH
Q psy17306 163 AKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242 (904)
Q Consensus 163 A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~ 242 (904)
|+..+ .+++..+|.++.++..+|.
T Consensus 83 A~~~~--------------------------------------------------------~~al~~~p~~~~~~~~l~~ 106 (368)
T 1fch_A 83 AVLLF--------------------------------------------------------EAAVQQDPKHMEAWQYLGT 106 (368)
T ss_dssp HHHHH--------------------------------------------------------HHHHHSCTTCHHHHHHHHH
T ss_pred HHHHH--------------------------------------------------------HHHHHhCCCCHHHHHHHHH
Confidence 88877 6778888888999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHH
Q psy17306 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKAL 322 (904)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~ 322 (904)
++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|+... .+...
T Consensus 107 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~------------ 172 (368)
T 1fch_A 107 TQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH--LVTPA------------ 172 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG--GCC--------------
T ss_pred HHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH--HHHHH------------
Confidence 9999999999999999999999999999999999999999999999999999999998721 00000
Q ss_pred HHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCccccccccc
Q psy17306 323 WRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYK 402 (904)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~ 402 (904)
+..
T Consensus 173 ---------------------------------------------------------------~~~-------------- 175 (368)
T 1fch_A 173 ---------------------------------------------------------------EEG-------------- 175 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------------------HHH--------------
Confidence 000
Q ss_pred ccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcc
Q psy17306 403 DVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRI 482 (904)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (904)
.. .
T Consensus 176 -----------------------~~---~--------------------------------------------------- 178 (368)
T 1fch_A 176 -----------------------AG---G--------------------------------------------------- 178 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------hh---h---------------------------------------------------
Confidence 00 0
Q ss_pred cCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHH
Q psy17306 483 VPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTF 562 (904)
Q Consensus 483 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 562 (904)
. .....+..++.++ ..|++++|+..
T Consensus 179 ------------------------------------------~------------~~~~~~~~~~~~~-~~~~~~~A~~~ 203 (368)
T 1fch_A 179 ------------------------------------------A------------GLGPSKRILGSLL-SDSLFLEVKEL 203 (368)
T ss_dssp -------------------------------------------------------------CTTHHHH-HHHHHHHHHHH
T ss_pred ------------------------------------------h------------cccHHHHHHHHHh-hcccHHHHHHH
Confidence 0 0000114455555 78999999999
Q ss_pred HHHHhhhhhhHHHHHHHhCCc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q psy17306 563 ECRKLDKSAHFSTLAIKQNPL--LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 640 (904)
Q Consensus 563 ~~~~l~~a~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 640 (904)
|++ ++..+|. ++.++..+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|+.
T Consensus 204 ~~~-----------a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 204 FLA-----------AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHH-----------HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHH-----------HHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999 9999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc-----------HHHHHHHHHHHH
Q psy17306 641 AYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF-----------LDAYINLGNVLK 709 (904)
Q Consensus 641 ~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~a~~~la~~~~ 709 (904)
.+.++++.+|+++.++..+|.++...|++++|+..|+++++++|++ +.++.++|.++.
T Consensus 273 -----------~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 273 -----------AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp -----------HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred -----------HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence 6666667788999999999999999999999999999999999988 899999999999
Q ss_pred HhcchhHHHHHHHHhhcc
Q psy17306 710 EARIFDRANTLFYVSSYF 727 (904)
Q Consensus 710 ~~g~~~~A~~~~~~a~~~ 727 (904)
.+|++++|..+++++++.
T Consensus 342 ~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 342 MLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHTCGGGHHHHHTTCHHH
T ss_pred HhCChHhHHHhHHHHHHH
Confidence 999999999999877653
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.96 E-value=4.5e-26 Score=255.68 Aligned_cols=383 Identities=17% Similarity=0.116 Sum_probs=309.8
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHH
Q psy17306 59 DKSAHFSTLAIKQNPLLAEAYSNLGNVYKE----RGQLQEALENYRHAVRLKPDFIDGYINLAAALVA----AGDMEQAV 130 (904)
Q Consensus 59 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~ 130 (904)
..++..+.++.+ +.++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+
T Consensus 24 ~~~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 24 NVNLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp -CCHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred hHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 345666766654 5678999999999999 89999999999999986 678999999999999 99999999
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHH----cCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHH
Q psy17306 131 QAYVTALQYNPDLYCVRSDLGNLLKA----LGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIV 206 (904)
Q Consensus 131 ~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 206 (904)
.+|+++.+. +++.++..+|.+|.. .+++++|+.+|
T Consensus 100 ~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~--------------------------------------- 138 (490)
T 2xm6_A 100 IWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWF--------------------------------------- 138 (490)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH---------------------------------------
T ss_pred HHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH---------------------------------------
Confidence 999999875 578899999999999 89999999999
Q ss_pred HhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--
Q psy17306 207 CNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE----RGQLQEALENYRHAVRLKPDFIDGYINLAAALVA-- 280 (904)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 280 (904)
+++... .++.+++.+|.+|.. .+++++|+.+|+++++. .++.++..+|.+|..
T Consensus 139 -----------------~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~ 197 (490)
T 2xm6_A 139 -----------------RLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGL 197 (490)
T ss_dssp -----------------HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS
T ss_pred -----------------HHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCC
Confidence 344443 468899999999998 89999999999999986 579999999999998
Q ss_pred --cCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHh
Q psy17306 281 --AGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKI 358 (904)
Q Consensus 281 --~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (904)
.+++++|+.+|+++.+.....
T Consensus 198 g~~~~~~~A~~~~~~a~~~~~~~--------------------------------------------------------- 220 (490)
T 2xm6_A 198 GVERNDAISAQWYRKSATSGDEL--------------------------------------------------------- 220 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHH---------------------------------------------------------
T ss_pred CCCcCHHHHHHHHHHHHHCCCHH---------------------------------------------------------
Confidence 899999999999999864322
Q ss_pred hhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhh
Q psy17306 359 ECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKAD 438 (904)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~ 438 (904)
+.+.+|.++...... ..++++|+..|++++...
T Consensus 221 ----------------------a~~~lg~~y~~g~g~-------------------~~~~~~A~~~~~~a~~~~------ 253 (490)
T 2xm6_A 221 ----------------------GQLHLADMYYFGIGV-------------------TQDYTQSRVLFSQSAEQG------ 253 (490)
T ss_dssp ----------------------HHHHHHHHHHHTSSS-------------------CCCHHHHHHHHHHHHTTT------
T ss_pred ----------------------HHHHHHHHHHcCCCC-------------------CCCHHHHHHHHHHHHHCC------
Confidence 222223222110000 001566777777665531
Q ss_pred hHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHh
Q psy17306 439 KTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLD 518 (904)
Q Consensus 439 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 518 (904)
T Consensus 254 -------------------------------------------------------------------------------- 253 (490)
T 2xm6_A 254 -------------------------------------------------------------------------------- 253 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCcchHHHHHHHHHHHhhCchhHhh----cCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHH
Q psy17306 519 SGKSWRTNPEHPNYVAAARATKYVYNVEPDLTRE----GGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNV 594 (904)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~ 594 (904)
++. ++..+|.++.. .+++++|+.+|++ +.+. .++.+++.+|.+
T Consensus 254 ----------~~~----------a~~~lg~~y~~g~~~~~d~~~A~~~~~~-----------a~~~--~~~~a~~~Lg~~ 300 (490)
T 2xm6_A 254 ----------NSI----------AQFRLGYILEQGLAGAKEPLKALEWYRK-----------SAEQ--GNSDGQYYLAHL 300 (490)
T ss_dssp ----------CHH----------HHHHHHHHHHHTTTSSCCHHHHHHHHHH-----------HHTT--TCHHHHHHHHHH
T ss_pred ----------CHH----------HHHHHHHHHHCCCCCCCCHHHHHHHHHH-----------HHHc--CCHHHHHHHHHH
Confidence 111 22566666666 8999999999999 7654 567899999999
Q ss_pred HHHc-----CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhChhhHHHhhhcCcchHHH
Q psy17306 595 YKER-----GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG---DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVA 666 (904)
Q Consensus 595 ~~~~-----g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a 666 (904)
|... +++++|+..|+++++. .++.+++++|.+|...| ++++|+.+|+ ++++. +++.+
T Consensus 301 y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~-----------~a~~~--~~~~a 365 (490)
T 2xm6_A 301 YDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFR-----------KAAAK--GEKAA 365 (490)
T ss_dssp HHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHH-----------HHHHT--TCHHH
T ss_pred HHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHH-----------HHHHC--CCHHH
Confidence 9998 8999999999999987 45789999999999877 7899999555 44444 46789
Q ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH----hcchhHHHHHHHHhhcccCC---hhhHH
Q psy17306 667 WSNLGCVFNA----QGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKE----ARIFDRANTLFYVSSYFMIT---DEDID 735 (904)
Q Consensus 667 ~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~---~~~~~ 735 (904)
++++|.+|.. .+++++|+.+|+++++.. ++.++++||.+|.. .+++++|..+|+++++..++ +....
T Consensus 366 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~ 443 (490)
T 2xm6_A 366 QFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRN 443 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHH
Confidence 9999999999 899999999999999864 68999999999999 89999999999999998854 55555
Q ss_pred HHHHHH
Q psy17306 736 VILERC 741 (904)
Q Consensus 736 ~~l~~~ 741 (904)
..++..
T Consensus 444 ~~l~~~ 449 (490)
T 2xm6_A 444 ITEKKL 449 (490)
T ss_dssp HHHTTS
T ss_pred HHHHhc
Confidence 554443
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=2.3e-28 Score=264.31 Aligned_cols=94 Identities=20% Similarity=0.185 Sum_probs=87.8
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc----
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF---- 618 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---- 618 (904)
+..+|.++...|++++|+..|++ ++..+|.++.+++.+|.++...|++++|+..|++++++.|++
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~-----------al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 322 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRR-----------ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 322 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH-----------HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcc
Confidence 36778888899999999999999 999999999999999999999999999999999999999888
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 619 -------IDGYINLAAALVAAGDMEQAVQAYVTALQ 647 (904)
Q Consensus 619 -------~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 647 (904)
..+|..+|.++..+|++++|...+.++++
T Consensus 323 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 323 GEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp --CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred ccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 89999999999999999999997776666
No 21
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=99.96 E-value=1.2e-29 Score=249.64 Aligned_cols=113 Identities=31% Similarity=0.558 Sum_probs=74.4
Q ss_pred cccCCchhhhhhhcchhHHHHHHHhcCCCCCCCCCCCCCCCCccccccCCchhHhHHHHHHHHHHhhcCccCCCCC---C
Q psy17306 791 HWIEPPKRERKANYAVDAYFKEALRTSEPKAPKAPRPPKQPIVQDFQFFPPRLFEILDQEIYYFRKTVGYKVPKNP---E 867 (904)
Q Consensus 791 ~w~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 867 (904)
.||+|++|||+.+|+||.||+++|+++.++.|++||+||+++|+||||||+||.||||+|++||+|.+||+||+++ +
T Consensus 1 ~wI~p~KRERK~nYsvd~yyk~~l~~~~~~~pk~pr~PK~p~~~D~QFyp~rL~eL~ekE~~~~~k~~~y~~~~~~~~~~ 80 (374)
T 2y9y_A 1 MLLNPTKRERKENYSIDNYYKDVLNTGRSSTPSHPRMPKPHVFHSHQLQPPQLQVLYEKERMWTAKKTGYVPTMDDVKAA 80 (374)
T ss_dssp -----------------------------CCCCCCCCCCCCCCCSCCSCCTTHHHHHHHHHHHHHHTTTCCCCHHHHTTT
T ss_pred CCCCCccccccccCCccHHHHHHHhcCCCCCCCCCCCCCCCCCCcccCCcHHHHHHHHHHHHHHHHHhCCcCCccccccc
Confidence 4999999999999999999999999877788999999999999999999999999999999999999999999743 1
Q ss_pred CC-----cchHHHHHHHHhhhhccCCCCHHHHHHHHHHhhc
Q psy17306 868 LG-----SDATKAQKEEQKKIDESEPLTEEELAEKEELLTQ 903 (904)
Q Consensus 868 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (904)
.| .+...++.++|+.|||++||||||+++|++|++|
T Consensus 81 ~~~~~~~~~~~~~~~~eq~~id~~~~LTeEE~~EKe~LL~e 121 (374)
T 2y9y_A 81 YGKISDQEEQKEKLELLKLSVNNSQPLTEEEEKMKADWESE 121 (374)
T ss_dssp TCCCCSTTTHHHHHHHHHHHHTCCSSSCHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHHHhhhccccccCCCCHHHHHHHHHHHHh
Confidence 11 1223477899999999999999999999999986
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.96 E-value=1.4e-25 Score=254.35 Aligned_cols=427 Identities=11% Similarity=0.034 Sum_probs=316.0
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHH
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLG 83 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 83 (904)
.|....+++..+.. ...|++++|...|+++++.+|.++.+|..++..+...|++++|..+|++++...| +...|..++
T Consensus 9 ~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~ 86 (530)
T 2ooe_A 9 NPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYL 86 (530)
T ss_dssp CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHH
Confidence 35566778888874 7788999999999999999999999999999999999999999999999999888 466787777
Q ss_pred H-HHHHhCcHHHHHH----HHHHHHhc---CCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhcCCChh--
Q psy17306 84 N-VYKERGQLQEALE----NYRHAVRL---KPDFIDGYINLAAALVA---------AGDMEQAVQAYVTALQYNPDLY-- 144 (904)
Q Consensus 84 ~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~-- 144 (904)
. +....|++++|.+ .|++++.. +|.+..+|...+..... .|+++.|+..|+++++ .|...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~ 165 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIE 165 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHH
Confidence 5 3345677776655 77777654 56667788887777655 6888999999999988 56542
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHH
Q psy17306 145 CVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFST 224 (904)
Q Consensus 145 ~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 224 (904)
..|.....+....|. ..+...+ ....+++..|...+.... .+.
T Consensus 166 ~~~~~~~~~e~~~~~-~~~~~~l---------~~~~~~~~~A~~~~~~~~---------------------------~~~ 208 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI-HLAKKMI---------EDRSRDYMNARRVAKEYE---------------------------TVM 208 (530)
T ss_dssp HHHHHHHHHHHHHCH-HHHHHHH---------HTTHHHHHHHHHHHHHHH---------------------------HHH
T ss_pred HHHHHHHHHHHhhch-hHHHHHH---------HHhhHHHHHHHHHHHHHH---------------------------HHH
Confidence 333333332222221 0111111 112344555555443200 000
Q ss_pred HHhh-----cCch-------hHHHHHHHHHHHHH----hCCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----
Q psy17306 225 LAIK-----QNPL-------LAEAYSNLGNVYKE----RGQL----QEALENYRHAVRLKPDFIDGYINLAAALVA---- 280 (904)
Q Consensus 225 ~~~~-----~~~~-------~~~~~~~lg~~~~~----~g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~---- 280 (904)
..+. ..|. ....|......... .++. ..++..|++++..+|.++.+|+.+|..+..
T Consensus 209 ~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~ 288 (530)
T 2ooe_A 209 KGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL 288 (530)
T ss_dssp HHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchh
Confidence 1111 1221 12333333322221 1232 478899999999999999999999999986
Q ss_pred ---cCCHH-------HHHHHHHHHHh-hCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhh
Q psy17306 281 ---AGDME-------QAVQAYVTALQ-YNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQ 349 (904)
Q Consensus 281 ---~g~~~-------~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (904)
.|+++ +|+..|+++++ ..|++
T Consensus 289 ~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~------------------------------------------------ 320 (530)
T 2ooe_A 289 LAEKGDMNNAKLFSDEAANIYERAISTLLKKN------------------------------------------------ 320 (530)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC------------------------------------------------
T ss_pred hhhccchhhhhhhhHHHHHHHHHHHHHhCccc------------------------------------------------
Confidence 68876 67777777765 55554
Q ss_pred hhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhh
Q psy17306 350 EKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAI 429 (904)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 429 (904)
T Consensus 321 -------------------------------------------------------------------------------- 320 (530)
T 2ooe_A 321 -------------------------------------------------------------------------------- 320 (530)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcCh
Q psy17306 430 DHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSP 509 (904)
Q Consensus 430 ~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 509 (904)
T Consensus 321 -------------------------------------------------------------------------------- 320 (530)
T 2ooe_A 321 -------------------------------------------------------------------------------- 320 (530)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchH-HHH
Q psy17306 510 NKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLA-EAY 588 (904)
Q Consensus 510 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~-~~~ 588 (904)
+ .+|..+|.++...|++++|...|++ ++..+|.++ .+|
T Consensus 321 --------------------~----------~l~~~~~~~~~~~g~~~~A~~~~~~-----------al~~~p~~~~~~~ 359 (530)
T 2ooe_A 321 --------------------M----------LLYFAYADYEESRMKYEKVHSIYNR-----------LLAIEDIDPTLVY 359 (530)
T ss_dssp --------------------H----------HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHSSSSCHHHHH
T ss_pred --------------------H----------HHHHHHHHHHHhcCCHHHHHHHHHH-----------HhCccccCchHHH
Confidence 1 1236667778888999999999999 999999875 699
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHH
Q psy17306 589 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA-LVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAW 667 (904)
Q Consensus 589 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~ 667 (904)
..+|.++.+.|++++|...|+++++..|.....+...+.+ +...|++++|.. .|.++++..|+++.+|
T Consensus 360 ~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~-----------~~e~al~~~p~~~~~~ 428 (530)
T 2ooe_A 360 IQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK-----------IFELGLKKYGDIPEYV 428 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHH-----------HHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHH-----------HHHHHHHHCCCCHHHH
Confidence 9999999999999999999999999999888887777766 446899999999 6666667788999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCcCcH----HHHHHHHHHHHHhcchhHHHHHHHHhhcccCC
Q psy17306 668 SNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL----DAYINLGNVLKEARIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 668 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 730 (904)
..+|.++...|+.++|...|++++...|.++ .+|...+......|+.+.+..+++++++..|+
T Consensus 429 ~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 429 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 9999999999999999999999999876554 48888888899999999999999999998874
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=5.6e-27 Score=252.90 Aligned_cols=293 Identities=19% Similarity=0.186 Sum_probs=245.0
Q ss_pred HHHHHHHHhcCCChh----hHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHH
Q psy17306 130 VQAYVTALQYNPDLY----CVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAI 205 (904)
Q Consensus 130 ~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 205 (904)
...+.+++...+.++ ..++.+|.++...|++++|+..|
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~-------------------------------------- 88 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFM-------------------------------------- 88 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHH--------------------------------------
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHH--------------------------------------
Confidence 344555555555544 45889999999999999888888
Q ss_pred HHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q psy17306 206 VCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285 (904)
Q Consensus 206 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (904)
++++..+|.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|+++
T Consensus 89 ------------------~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 150 (365)
T 4eqf_A 89 ------------------EAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQ 150 (365)
T ss_dssp ------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred ------------------HHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHH
Confidence 68888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccc
Q psy17306 286 QAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDL 365 (904)
Q Consensus 286 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (904)
+|+..|+++++..|+... .|..
T Consensus 151 ~A~~~~~~al~~~p~~~~--~~~~-------------------------------------------------------- 172 (365)
T 4eqf_A 151 DACEALKNWIKQNPKYKY--LVKN-------------------------------------------------------- 172 (365)
T ss_dssp HHHHHHHHHHHHCHHHHC--C-----------------------------------------------------------
T ss_pred HHHHHHHHHHHhCccchH--HHhh--------------------------------------------------------
Confidence 999999999999887611 0000
Q ss_pred cccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhh
Q psy17306 366 HSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMS 445 (904)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~ 445 (904)
++
T Consensus 173 -------------------~~----------------------------------------------------------- 174 (365)
T 4eqf_A 173 -------------------KK----------------------------------------------------------- 174 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------hc-----------------------------------------------------------
Confidence 00
Q ss_pred hcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhccccccc
Q psy17306 446 RWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRT 525 (904)
Q Consensus 446 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 525 (904)
T Consensus 175 -------------------------------------------------------------------------------- 174 (365)
T 4eqf_A 175 -------------------------------------------------------------------------------- 174 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCc--hHHHHHHHHHHHHHcCCHHH
Q psy17306 526 NPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPL--LAEAYSNLGNVYKERGQLQE 603 (904)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~ 603 (904)
....++..+|.++...|++++|+..|++ ++..+|. ++.+++.+|.++...|++++
T Consensus 175 ------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----------al~~~p~~~~~~~~~~l~~~~~~~g~~~~ 231 (365)
T 4eqf_A 175 ------------GSPGLTRRMSKSPVDSSVLEGVKELYLE-----------AAHQNGDMIDPDLQTGLGVLFHLSGEFNR 231 (365)
T ss_dssp --------------------------CCHHHHHHHHHHHH-----------HHHHSCSSCCHHHHHHHHHHHHHHTCHHH
T ss_pred ------------cchHHHHHHHHHHhhhhhHHHHHHHHHH-----------HHHhCcCccCHHHHHHHHHHHHHCCCHHH
Confidence 0001236778888999999999999999 9999999 89999999999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHH
Q psy17306 604 ALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLA 683 (904)
Q Consensus 604 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A 683 (904)
|+..|+++++.+|+++.++.++|.++...|++++|+. .+.++++.+|+++.++.++|.+|...|++++|
T Consensus 232 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-----------~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 232 AIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVE-----------AYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999999999999 66666777889999999999999999999999
Q ss_pred HHHHHHHHhcCcC------------cHHHHHHHHHHHHHhcchhHHHHHHHHhhccc
Q psy17306 684 IHHFEKAVSLDPN------------FLDAYINLGNVLKEARIFDRANTLFYVSSYFM 728 (904)
Q Consensus 684 ~~~~~~al~~~p~------------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~ 728 (904)
+..|+++++++|+ +..++..++.++..+|+.+.|..+.++.++..
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~ 357 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHH
Confidence 9999999999887 36789999999999999999999988766543
No 24
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=99.95 E-value=9.8e-29 Score=238.74 Aligned_cols=108 Identities=86% Similarity=1.311 Sum_probs=80.7
Q ss_pred chhhhhhhcchhHHHHHHHhcCCCCCCCCCCCCCCCCccccccCCchhHhHHHHHHHHHHhhcCccCCCCCCCCcchHHH
Q psy17306 796 PKRERKANYAVDAYFKEALRTSEPKAPKAPRPPKQPIVQDFQFFPPRLFEILDQEIYYFRKTVGYKVPKNPELGSDATKA 875 (904)
Q Consensus 796 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (904)
++|||+.+|+||.||+++|.++.++.|++||+||+++|+|||||||||.||||+|++||+|++||+||..++....+..+
T Consensus 1 ~kRERK~~Ys~d~yy~~~~~~~~~~~~k~pr~pK~~~~~D~QFy~~rL~eL~ekE~~~~~k~~~~~~~~~~~~~~~~~~~ 80 (304)
T 1ofc_X 1 GAMERKANYAVDAYFREALRVSEPKAPKAPRPPKQPIVQDFQFFPPRLFELLDQEIYYFRKTVGYKVPKNTELGSDATKV 80 (304)
T ss_dssp ---------CHHHHHHHHC--------CCCCCTTCCCCCGGGCCCHHHHHHHHHHHHHHHHHTTCCCCCCC-------HH
T ss_pred CCccccccCCchHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCcHHHHHHHHHHHHHHHHHhCCcCCCcccchhhHHHH
Confidence 48999999999999999999877788999999999999999999999999999999999999999998876543332346
Q ss_pred HHHHHhhhhccCCCCHHHHHHHHHHhhc
Q psy17306 876 QKEEQKKIDESEPLTEEELAEKEELLTQ 903 (904)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (904)
+.++|+.|||++||||||+++|++|++|
T Consensus 81 ~~~eq~~id~~~~LTeeE~~eKe~Ll~e 108 (304)
T 1ofc_X 81 QREEQRKIDEAEPLTEEEIQEKENLLSQ 108 (304)
T ss_dssp HHHHHHHHHTCCCCCHHHHHHHHHHTTS
T ss_pred HHHHhhccccCCCCCHHHHHHHHHHHHh
Confidence 7799999999999999999999999986
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.95 E-value=3.7e-25 Score=250.92 Aligned_cols=166 Identities=11% Similarity=0.016 Sum_probs=144.0
Q ss_pred hhCchhHhh-------cCChh-------HHHHHHHHHhhhhhhHHHHHHH-hCCchHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17306 544 NVEPDLTRE-------GGSIP-------ITLTFECRKLDKSAHFSTLAIK-QNPLLAEAYSNLGNVYKERGQLQEALENY 608 (904)
Q Consensus 544 ~~l~~~~~~-------~~~~~-------~A~~~~~~~l~~a~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 608 (904)
...|..+.. .|+++ +|+..|++ ++. ..|++..+|..+|.++...|++++|...|
T Consensus 276 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~-----------Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 276 YEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER-----------AISTLLKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH-----------HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH-----------HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 555555553 68876 88888888 997 79999999999999999999999999999
Q ss_pred HHHHhhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHH-HHhCCCHHHHHHH
Q psy17306 609 RHAVRLKPDFI-DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCV-FNAQGEIWLAIHH 686 (904)
Q Consensus 609 ~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~-~~~~g~~~~A~~~ 686 (904)
++++++.|.++ .+|..+|.++.+.|++++|.. .|.++++..|.....+...+.+ +...|++++|...
T Consensus 345 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~-----------~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 345 NRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM-----------IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp HHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHhCccccCchHHHHHHHHHHHHhcCHHHHHH-----------HHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHH
Confidence 99999999986 699999999999999999999 5555555566666667666665 4469999999999
Q ss_pred HHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCCh
Q psy17306 687 FEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITD 731 (904)
Q Consensus 687 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 731 (904)
|+++++.+|+++.++.+++.++...|+.++|..+|++++...+.+
T Consensus 414 ~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 414 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999986544
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=6.3e-27 Score=252.50 Aligned_cols=275 Identities=19% Similarity=0.159 Sum_probs=220.8
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy17306 77 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKA 156 (904)
Q Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 156 (904)
..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|.++..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 34777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHH
Q psy17306 157 LGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEA 236 (904)
Q Consensus 157 ~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (904)
.|++++|+..+ ++++...|.+...
T Consensus 146 ~g~~~~A~~~~--------------------------------------------------------~~al~~~p~~~~~ 169 (365)
T 4eqf_A 146 TSHQQDACEAL--------------------------------------------------------KNWIKQNPKYKYL 169 (365)
T ss_dssp TTCHHHHHHHH--------------------------------------------------------HHHHHHCHHHHCC
T ss_pred cccHHHHHHHH--------------------------------------------------------HHHHHhCccchHH
Confidence 77777777766 4555555555444
Q ss_pred H----------HHHHHHHHHhCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccc
Q psy17306 237 Y----------SNLGNVYKERGQLQEALENYRHAVRLKPD--FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKE 304 (904)
Q Consensus 237 ~----------~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 304 (904)
+ ..+|.++...|++++|+.+|++++..+|. ++.++..+|.++...|++++|+..|+++++..|+++
T Consensus 170 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-- 247 (365)
T 4eqf_A 170 VKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY-- 247 (365)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--
T ss_pred HhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--
Confidence 4 44599999999999999999999999999 899999999999999999999999999999988771
Q ss_pred cCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHH
Q psy17306 305 DGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYI 384 (904)
Q Consensus 305 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (904)
T Consensus 248 -------------------------------------------------------------------------------- 247 (365)
T 4eqf_A 248 -------------------------------------------------------------------------------- 247 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCC
Q psy17306 385 MGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGP 464 (904)
Q Consensus 385 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 464 (904)
T Consensus 248 -------------------------------------------------------------------------------- 247 (365)
T 4eqf_A 248 -------------------------------------------------------------------------------- 247 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHh
Q psy17306 465 GGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYN 544 (904)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (904)
.++.
T Consensus 248 ----------------------------------------------------------------------------~~~~ 251 (365)
T 4eqf_A 248 ----------------------------------------------------------------------------SLWN 251 (365)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 1237
Q ss_pred hCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------
Q psy17306 545 VEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD------- 617 (904)
Q Consensus 545 ~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------- 617 (904)
.+|.++...|++++|+..|++ ++..+|+++.+++++|.++...|++++|+..|++++++.|+
T Consensus 252 ~l~~~~~~~g~~~~A~~~~~~-----------al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 320 (365)
T 4eqf_A 252 RLGATLANGDRSEEAVEAYTR-----------ALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQV 320 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHcCCHHHHHHHHHH-----------HHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCccc
Confidence 778888999999999999999 99999999999999999999999999999999999999877
Q ss_pred -----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcC
Q psy17306 618 -----FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETR 660 (904)
Q Consensus 618 -----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~ 660 (904)
+..+|..++.++..+|+.+.|.....+.++ .+.+.+..+
T Consensus 321 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~----~~~~~~~~~ 364 (365)
T 4eqf_A 321 PHPAISGNIWAALRIALSLMDQPELFQAANLGDLD----VLLRAFNLD 364 (365)
T ss_dssp ------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG----GGTTTTTCC
T ss_pred chhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH----HHHHhcCCC
Confidence 367899999999999999998885554333 555544443
No 27
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=6.8e-26 Score=240.93 Aligned_cols=262 Identities=13% Similarity=0.077 Sum_probs=235.4
Q ss_pred HHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCccc
Q psy17306 225 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD-MEQAVQAYVTALQYNPLLKK 303 (904)
Q Consensus 225 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~ 303 (904)
.++..+|+++.++..+|.++...|++++|+..|++++.++|++..+|..+|.++..+|+ +++|+..|+++++++|+++
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~- 166 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY- 166 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH-
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH-
Confidence 35678899999999999999999999999999999999999999999999999999997 9999999999999999881
Q ss_pred ccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHH
Q psy17306 304 EDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIY 383 (904)
Q Consensus 304 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (904)
T Consensus 167 -------------------------------------------------------------------------------- 166 (382)
T 2h6f_A 167 -------------------------------------------------------------------------------- 166 (382)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccC
Q psy17306 384 IMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSG 463 (904)
Q Consensus 384 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 463 (904)
T Consensus 167 -------------------------------------------------------------------------------- 166 (382)
T 2h6f_A 167 -------------------------------------------------------------------------------- 166 (382)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHH
Q psy17306 464 PGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVY 543 (904)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (904)
.+|
T Consensus 167 -----------------------------------------------------------------------------~a~ 169 (382)
T 2h6f_A 167 -----------------------------------------------------------------------------QVW 169 (382)
T ss_dssp -----------------------------------------------------------------------------HHH
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 234
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
+.+|.++...|++++|+..|++ ++..+|++..+|+++|.++..+|++++|+.+|+++++++|++..+|+
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~k-----------al~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~ 238 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIAD-----------ILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWN 238 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHH-----------HHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Confidence 7788888899999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-cCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhcCcCcHHH
Q psy17306 624 NLAAALVA-AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG--EIWLAIHHFEKAVSLDPNFLDA 700 (904)
Q Consensus 624 ~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~a 700 (904)
++|.++.. .|..++|+. ...++ .+.+++.++|++..+|+++|.++...| ++++|++.++++ +.+|+++.+
T Consensus 239 ~lg~~l~~l~~~~~eA~~--~~el~----~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~a 311 (382)
T 2h6f_A 239 QRYFVISNTTGYNDRAVL--EREVQ----YTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYL 311 (382)
T ss_dssp HHHHHHHHTTCSCSHHHH--HHHHH----HHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHH
T ss_pred HHHHHHHHhcCcchHHHH--HHHHH----HHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHH
Confidence 99999999 555588841 11111 788888999999999999999999998 699999999998 999999999
Q ss_pred HHHHHHHHHHhc--------c-hhHHHHHHHHh-hcccCChhhHHHHHHHHH
Q psy17306 701 YINLGNVLKEAR--------I-FDRANTLFYVS-SYFMITDEDIDVILERCE 742 (904)
Q Consensus 701 ~~~la~~~~~~g--------~-~~~A~~~~~~a-~~~~~~~~~~~~~l~~~~ 742 (904)
+..+|.+|..+| + +++|+++|+++ .+..|........++...
T Consensus 312 l~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 312 IAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 999999999985 3 59999999999 888887766666655544
No 28
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.94 E-value=9.9e-26 Score=239.67 Aligned_cols=246 Identities=11% Similarity=0.004 Sum_probs=227.8
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC-HHHHHHHHHHHHhcCcccHHHHHHH
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRK-LDKSAHFSTLAIKQNPLLAEAYSNL 82 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l 82 (904)
.|....++..+|.++...|++++|+..|++++..+|++..+|+.+|.++...|+ +++|+..|++++.++|++..+|+.+
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~ 172 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 172 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 367788999999999999999999999999999999999999999999999997 9999999999999999999999999
Q ss_pred HHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH-cCChH
Q psy17306 83 GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKA-LGRLD 161 (904)
Q Consensus 83 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~ 161 (904)
|.++..+|++++|+.+|++++.++|++..+|..+|.++..+|++++|+.+|+++++++|++..+|..+|.++.. .|..+
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 55557
Q ss_pred HHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHH
Q psy17306 162 EAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLG 241 (904)
Q Consensus 162 ~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg 241 (904)
+|+. +.++.. +.+++..+|++..+|+.+|
T Consensus 253 eA~~------------------~~el~~---------------------------------~~~Al~l~P~~~~a~~~l~ 281 (382)
T 2h6f_A 253 RAVL------------------EREVQY---------------------------------TLEMIKLVPHNESAWNYLK 281 (382)
T ss_dssp HHHH------------------HHHHHH---------------------------------HHHHHHHSTTCHHHHHHHH
T ss_pred HHHH------------------HHHHHH---------------------------------HHHHHHHCCCCHHHHHHHH
Confidence 7741 111122 2689999999999999999
Q ss_pred HHHHHhC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHH-HhhCCCc
Q psy17306 242 NVYKERG--QLQEALENYRHAVRLKPDFIDGYINLAAALVAAG---------DMEQAVQAYVTA-LQYNPLL 301 (904)
Q Consensus 242 ~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~a-l~~~p~~ 301 (904)
.++...| ++++|+..++++ +.+|+++.++..+|.++..+| .+++|+.+|+++ ++.+|..
T Consensus 282 ~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 282 GILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR 352 (382)
T ss_dssp HHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchh
Confidence 9999988 699999999998 999999999999999999985 359999999999 9999987
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.94 E-value=2.5e-25 Score=235.89 Aligned_cols=283 Identities=19% Similarity=0.180 Sum_probs=242.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHH
Q psy17306 144 YCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFS 223 (904)
Q Consensus 144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 223 (904)
...++.+|..+...|++++|+..+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~-------------------------------------------------------- 44 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAF-------------------------------------------------------- 44 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHH--------------------------------------------------------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHH--------------------------------------------------------
Confidence 355678888888888888887777
Q ss_pred HHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCccc
Q psy17306 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKK 303 (904)
Q Consensus 224 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 303 (904)
++++..+|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|....
T Consensus 45 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 124 (327)
T 3cv0_A 45 EAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 124 (327)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH
Confidence 57888899999999999999999999999999999999999999999999999999999999999999999999887711
Q ss_pred ccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHH
Q psy17306 304 EDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIY 383 (904)
Q Consensus 304 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (904)
.+..
T Consensus 125 --~~~~-------------------------------------------------------------------------- 128 (327)
T 3cv0_A 125 --LGSV-------------------------------------------------------------------------- 128 (327)
T ss_dssp --C-----------------------------------------------------------------------------
T ss_pred --HHHH--------------------------------------------------------------------------
Confidence 0000
Q ss_pred HhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccC
Q psy17306 384 IMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSG 463 (904)
Q Consensus 384 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 463 (904)
+ ...
T Consensus 129 -~-------------------------------------------~~~-------------------------------- 132 (327)
T 3cv0_A 129 -N-------------------------------------------LQA-------------------------------- 132 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -H-------------------------------------------hHH--------------------------------
Confidence 0 000
Q ss_pred CCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHH
Q psy17306 464 PGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVY 543 (904)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (904)
.|.. ...
T Consensus 133 --------------------------------------------------------------~~~~-----------~~~ 139 (327)
T 3cv0_A 133 --------------------------------------------------------------DVDI-----------DDL 139 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------HHHH-----------HHH
Confidence 0000 000
Q ss_pred hhC-ch-hHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q psy17306 544 NVE-PD-LTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621 (904)
Q Consensus 544 ~~l-~~-~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 621 (904)
..+ +. ++...|++++|+..+++ ++...|.++.++..+|.++...|++++|+..|+++++.+|+++.+
T Consensus 140 ~~~~~~~~~~~~~~~~~A~~~~~~-----------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 208 (327)
T 3cv0_A 140 NVQSEDFFFAAPNEYRECRTLLHA-----------ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL 208 (327)
T ss_dssp ------CCTTSHHHHHHHHHHHHH-----------HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHhHHHHHcccHHHHHHHHHH-----------HHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 222 33 46778899999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC-----
Q psy17306 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN----- 696 (904)
Q Consensus 622 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----- 696 (904)
+..+|.++...|++++|+. .+.++++.+|+++.++..+|.++...|++++|+..|+++++++|.
T Consensus 209 ~~~l~~~~~~~~~~~~A~~-----------~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 277 (327)
T 3cv0_A 209 WNKLGATLANGNRPQEALD-----------AYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPT 277 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHcCCHHHHHH-----------HHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccc
Confidence 9999999999999999999 666666778888999999999999999999999999999999999
Q ss_pred -------cHHHHHHHHHHHHHhcchhHHHHHHHHhhcccC
Q psy17306 697 -------FLDAYINLGNVLKEARIFDRANTLFYVSSYFMI 729 (904)
Q Consensus 697 -------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 729 (904)
++.++..+|.++..+|++++|..++++++...+
T Consensus 278 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 278 GEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred ccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 899999999999999999999999998877654
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=1.1e-24 Score=214.54 Aligned_cols=200 Identities=28% Similarity=0.329 Sum_probs=122.1
Q ss_pred CCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy17306 39 TNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 118 (904)
Q Consensus 39 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 118 (904)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHH
Q psy17306 119 ALVAA-----------GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAK 187 (904)
Q Consensus 119 ~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~ 187 (904)
++... |++++|+..|+++++++|+++.++..+|.++...|++++|+..|
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~-------------------- 141 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASL-------------------- 141 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH--------------------
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHH--------------------
Confidence 66666 66666666666666666666666666666666666666666666
Q ss_pred HHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q psy17306 188 NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 267 (904)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 267 (904)
++++..+ +++.++..+|.++...|++++|+..|+++++.+|++
T Consensus 142 ------------------------------------~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 184 (217)
T 2pl2_A 142 ------------------------------------KQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD 184 (217)
T ss_dssp ------------------------------------HHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred ------------------------------------HHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 4555555 566677777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 268 IDGYINLAAALVAAGDMEQAVQAYVTAL 295 (904)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al 295 (904)
+.++..+|.++...|++++|+..|+++-
T Consensus 185 ~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 185 LDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777777777777777777777776653
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.93 E-value=2.2e-24 Score=228.60 Aligned_cols=239 Identities=16% Similarity=0.129 Sum_probs=223.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
....++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCcHHHHHHHHHHHHhcCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHH
Q psy17306 87 KERGQLQEALENYRHAVRLKPDFIDGYINL--------------AA-ALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLG 151 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 151 (904)
...|++++|+..|++++..+|.+...+..+ +. ++...|++++|+..++++++.+|++..++..+|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 999999999999999999999998887777 66 688899999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCc
Q psy17306 152 NLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNP 231 (904)
Q Consensus 152 ~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 231 (904)
.++...|++++|+..+ .+++..+|
T Consensus 180 ~~~~~~~~~~~A~~~~--------------------------------------------------------~~~~~~~~ 203 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANL--------------------------------------------------------RRAVELRP 203 (327)
T ss_dssp HHHHHTTCHHHHHHHH--------------------------------------------------------HHHHHHCT
T ss_pred HHHHHhccHHHHHHHH--------------------------------------------------------HHHHHhCC
Confidence 9999999999998888 67888899
Q ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 232 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 232 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|+.
T Consensus 204 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999885
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.92 E-value=3.5e-24 Score=210.89 Aligned_cols=200 Identities=21% Similarity=0.275 Sum_probs=178.7
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGN 84 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 84 (904)
|..+.+++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 44566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-----------CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy17306 85 VYKER-----------GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNL 153 (904)
Q Consensus 85 ~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 153 (904)
++... |++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 99999 999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchh
Q psy17306 154 LKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLL 233 (904)
Q Consensus 154 ~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 233 (904)
+...|++++|+..| ++++..+|++
T Consensus 161 ~~~~g~~~~A~~~~--------------------------------------------------------~~al~~~P~~ 184 (217)
T 2pl2_A 161 YLSMGRLDEALAQY--------------------------------------------------------AKALEQAPKD 184 (217)
T ss_dssp HHHHTCHHHHHHHH--------------------------------------------------------HHHHHHSTTC
T ss_pred HHHcCCHHHHHHHH--------------------------------------------------------HHHHHhCCCC
Confidence 99999999999988 7899999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy17306 234 AEAYSNLGNVYKERGQLQEALENYRHAV 261 (904)
Q Consensus 234 ~~~~~~lg~~~~~~g~~~~A~~~~~~al 261 (904)
+.++..+|.++...|++++|+..|+++-
T Consensus 185 ~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 185 LDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999998764
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.7e-23 Score=213.35 Aligned_cols=229 Identities=19% Similarity=0.272 Sum_probs=219.3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc-------HH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL-------AE 77 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~ 77 (904)
+..+.+++.+|..++..|++++|+..|+++++.+ .++.++..+|.++...|++++|+..++++++.+|.+ +.
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 3567899999999999999999999999999999 899999999999999999999999999999998876 79
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHc
Q psy17306 78 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL 157 (904)
Q Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 157 (904)
++..+|.++...|++++|+..|++++.+.|. +.++...|++++|+..+++++..+|.++.++..+|.++...
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999987 56788889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHH
Q psy17306 158 GRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAY 237 (904)
Q Consensus 158 ~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (904)
|++++|+..+ ++++..+|.++.++
T Consensus 153 ~~~~~A~~~~--------------------------------------------------------~~a~~~~~~~~~~~ 176 (258)
T 3uq3_A 153 SDWPNAVKAY--------------------------------------------------------TEMIKRAPEDARGY 176 (258)
T ss_dssp TCHHHHHHHH--------------------------------------------------------HHHHHHCTTCHHHH
T ss_pred cCHHHHHHHH--------------------------------------------------------HHHHhcCcccHHHH
Confidence 9999999888 68888899999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 238 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 298 (904)
Q Consensus 238 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 298 (904)
..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..
T Consensus 177 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 177 SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999
No 34
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.92 E-value=5.8e-24 Score=234.20 Aligned_cols=360 Identities=17% Similarity=0.095 Sum_probs=247.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCH---HHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17306 12 LELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKL---DKSAHFSTLAIKQNPLLAEAYSNLGNVYKE 88 (904)
Q Consensus 12 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 88 (904)
..+|..++..|++++|+..|+++.+. .++.+++.+|.+|...|++ ++|+.+|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 56788899999999999999998765 5678888999999998888 8999999999866 67788999997776
Q ss_pred hC-----cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH---HHHHHHHHhcCCChhhHHHHHHHHHHHcCCh
Q psy17306 89 RG-----QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA---VQAYVTALQYNPDLYCVRSDLGNLLKALGRL 160 (904)
Q Consensus 89 ~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A---~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 160 (904)
.+ ++++|+.+|++++..+ ++.+++.+|.+|...+..+++ ...+.++.. +.++.+++.+|.+|...+.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCc
Confidence 65 8899999999998854 455888999999887765444 444444433 34577888888888888877
Q ss_pred HHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHH
Q psy17306 161 DEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNL 240 (904)
Q Consensus 161 ~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 240 (904)
+++.... ..++ ..+...+|. +++.+
T Consensus 158 ~~~~~~a-------------------~~~~---------------------------------~~a~~~~~~---a~~~L 182 (452)
T 3e4b_A 158 DQHLDDV-------------------ERIC---------------------------------KAALNTTDI---CYVEL 182 (452)
T ss_dssp GGGHHHH-------------------HHHH---------------------------------HHHTTTCTT---HHHHH
T ss_pred ccCHHHH-------------------HHHH---------------------------------HHHHcCCHH---HHHHH
Confidence 6654432 1111 234344443 88888
Q ss_pred HHHHHHhC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCcccccCCCCCccc
Q psy17306 241 GNVYKERG---QLQEALENYRHAVRLKPDFIDGYINLAAALVAA----GDMEQAVQAYVTALQYNPLLKKEDGWNTEPFV 313 (904)
Q Consensus 241 g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 313 (904)
|.++...| ++++|+.+|+++.+..|.....++.+|.+|... +++++|+.+|+++. |+++
T Consensus 183 g~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~----------- 248 (452)
T 3e4b_A 183 ATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYP----------- 248 (452)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST-----------
T ss_pred HHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH-----------
Confidence 99988888 888999999999988888888888888888665 68888888888876 4441
Q ss_pred ccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCC
Q psy17306 314 LDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNG 393 (904)
Q Consensus 314 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 393 (904)
.
T Consensus 249 ------------------------------------------------------------------~------------- 249 (452)
T 3e4b_A 249 ------------------------------------------------------------------A------------- 249 (452)
T ss_dssp ------------------------------------------------------------------H-------------
T ss_pred ------------------------------------------------------------------H-------------
Confidence 0
Q ss_pred cccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCc
Q psy17306 394 KILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGK 473 (904)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 473 (904)
T Consensus 250 -------------------------------------------------------------------------------- 249 (452)
T 3e4b_A 250 -------------------------------------------------------------------------------- 249 (452)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchh-H--
Q psy17306 474 VVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDL-T-- 550 (904)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-- 550 (904)
+++.+|.+ +
T Consensus 250 --------------------------------------------------------------------a~~~Lg~~~~~~ 261 (452)
T 3e4b_A 250 --------------------------------------------------------------------SWVSLAQLLYDF 261 (452)
T ss_dssp --------------------------------------------------------------------HHHHHHHHHHHS
T ss_pred --------------------------------------------------------------------HHHHHHHHHHhC
Confidence 11333333 2
Q ss_pred hhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy17306 551 REGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG-----QLQEALENYRHAVRLKPDFIDGYINL 625 (904)
Q Consensus 551 ~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~l 625 (904)
...+++++|+.+|++ +.+. +++.+++++|.+|. .| ++++|+.+|+++. |+++.++++|
T Consensus 262 ~~~~d~~~A~~~~~~-----------Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~L 324 (452)
T 3e4b_A 262 PELGDVEQMMKYLDN-----------GRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYL 324 (452)
T ss_dssp GGGCCHHHHHHHHHH-----------HHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHH
T ss_pred CCCCCHHHHHHHHHH-----------HHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHH
Confidence 246788889988888 6654 46888899998888 45 8999999999988 8888999999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCcCc
Q psy17306 626 AAALVA----AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNA----QGEIWLAIHHFEKAVSLDPNF 697 (904)
Q Consensus 626 g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~ 697 (904)
|.+|.. ..++++|+.+|+++ .+ +.++.+.++||.+|.. ..++.+|..+|++|.+..+
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~A-----------a~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-- 389 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTA-----------AR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-- 389 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHH-----------HT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC--
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHH-----------Hh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC--
Confidence 988877 34888899844444 33 3456788899998875 4588999999999888754
Q ss_pred HHHHHHHHHHH
Q psy17306 698 LDAYINLGNVL 708 (904)
Q Consensus 698 ~~a~~~la~~~ 708 (904)
+.+...++.+.
T Consensus 390 ~~a~~~l~~l~ 400 (452)
T 3e4b_A 390 PEANDLATQLE 400 (452)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555554
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.92 E-value=6.2e-24 Score=218.51 Aligned_cols=238 Identities=15% Similarity=0.115 Sum_probs=218.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc----HHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL----AEAYSNLG 83 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la 83 (904)
.+.++..|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++. .|.+ ..++..+|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999999999999999999999999 3333 55699999
Q ss_pred HHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHH
Q psy17306 84 NVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEA 163 (904)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 163 (904)
.++...|++++|+.+|+++++.+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|......+++++|
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999555556688888
Q ss_pred HHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHH
Q psy17306 164 KDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNV 243 (904)
Q Consensus 164 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~ 243 (904)
+..+ ++++..+|+++.++..+|.+
T Consensus 162 ~~~~--------------------------------------------------------~~a~~~~p~~~~~~~~~~~~ 185 (272)
T 3u4t_A 162 DSSF--------------------------------------------------------VKVLELKPNIYIGYLWRARA 185 (272)
T ss_dssp HHHH--------------------------------------------------------HHHHHHSTTCHHHHHHHHHH
T ss_pred HHHH--------------------------------------------------------HHHHHhCccchHHHHHHHHH
Confidence 8887 68889999999999999999
Q ss_pred HHHhCC---HHHHHHHHHHHHhhC---CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcc
Q psy17306 244 YKERGQ---LQEALENYRHAVRLK---PD-----FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLK 302 (904)
Q Consensus 244 ~~~~g~---~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 302 (904)
+...|+ +++|+..|+++++.. |+ ...++..+|.++...|++++|+.+|+++++++|+++
T Consensus 186 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 255 (272)
T 3u4t_A 186 NAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255 (272)
T ss_dssp HHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHH
Confidence 999999 999999999999885 44 236889999999999999999999999999999983
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.92 E-value=1.3e-23 Score=231.47 Aligned_cols=348 Identities=13% Similarity=0.048 Sum_probs=259.2
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy17306 46 LLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL---QEALENYRHAVRLKPDFIDGYINLAAALVA 122 (904)
Q Consensus 46 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 122 (904)
..+|..++..|++++|+..|+++.+. +++.+++.+|.+|...|++ ++|+.+|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 55799999999999999999999765 5678899999999999999 9999999999976 67889999997777
Q ss_pred cC-----CHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCc
Q psy17306 123 AG-----DMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPV 197 (904)
Q Consensus 123 ~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 197 (904)
.+ ++++|+.+|+++++. +++.+++.+|.+|...+...++...+ ..+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~--------------------~~~------- 132 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQ--------------------QQI------- 132 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHH--------------------HHH-------
T ss_pred CCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHH--------------------HHH-------
Confidence 66 889999999999984 55669999999998877655443222 111
Q ss_pred chhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHH----HHHHHHHhhCCCCHHHHHH
Q psy17306 198 TMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAL----ENYRHAVRLKPDFIDGYIN 273 (904)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~----~~~~~al~~~p~~~~~~~~ 273 (904)
.++. .+.++.+++.+|.++...+.++++. .+++.+...+| .+++.
T Consensus 133 --------------------------~~a~--~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~ 181 (452)
T 3e4b_A 133 --------------------------SQWQ--AAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVE 181 (452)
T ss_dssp --------------------------HHHH--HHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHH
T ss_pred --------------------------HHHH--HCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHH
Confidence 1222 2334778999999999998555544 44555544444 49999
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhh
Q psy17306 274 LAAALVAAG---DMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQE 350 (904)
Q Consensus 274 la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (904)
+|.+|...| ++++|+.+|+++.+..+..
T Consensus 182 Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~------------------------------------------------- 212 (452)
T 3e4b_A 182 LATVYQKKQQPEQQAELLKQMEAGVSRGTVT------------------------------------------------- 212 (452)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-------------------------------------------------
T ss_pred HHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-------------------------------------------------
Confidence 999999999 9999999999999888766
Q ss_pred hhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhc
Q psy17306 351 KCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAID 430 (904)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 430 (904)
+..+
T Consensus 213 ----------------------------a~~~------------------------------------------------ 216 (452)
T 3e4b_A 213 ----------------------------AQRV------------------------------------------------ 216 (452)
T ss_dssp ----------------------------HHHH------------------------------------------------
T ss_pred ----------------------------HHHH------------------------------------------------
Confidence 1111
Q ss_pred CCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChh
Q psy17306 431 HPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPN 510 (904)
Q Consensus 431 ~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 510 (904)
T Consensus 217 -------------------------------------------------------------------------------- 216 (452)
T 3e4b_A 217 -------------------------------------------------------------------------------- 216 (452)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHh----hcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHH
Q psy17306 511 KFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTR----EGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAE 586 (904)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~ 586 (904)
+.+|.++. ..+++++|+.+|++ +. |+++.
T Consensus 217 ---------------------------------~~Lg~~y~~g~~~~~d~~~A~~~~~~-----------aa---~g~~~ 249 (452)
T 3e4b_A 217 ---------------------------------DSVARVLGDATLGTPDEKTAQALLEK-----------IA---PGYPA 249 (452)
T ss_dssp ---------------------------------HHHHHHHTCGGGSSCCHHHHHHHHHH-----------HG---GGSTH
T ss_pred ---------------------------------HHHHHHHhCCCCCCCCHHHHHHHHHH-----------Hc---CCCHH
Confidence 22222222 23788999999999 76 89999
Q ss_pred HHHHHHHH-H--HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhChhhHHHhhh
Q psy17306 587 AYSNLGNV-Y--KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG-----DMEQAVQAYVTALQYNPSCYLKAIE 658 (904)
Q Consensus 587 ~~~~lg~~-~--~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~l~ 658 (904)
+++++|.+ + ...+++++|+.+|+++++. +++.+++++|.+|. .| ++++|+. .|.++.
T Consensus 250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~-----------~~~~Aa- 314 (452)
T 3e4b_A 250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEA-----------HFEKAV- 314 (452)
T ss_dssp HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHH-----------HHHTTT-
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHH-----------HHHHHh-
Confidence 99999999 4 5789999999999999965 58999999999998 56 9999999 777777
Q ss_pred cCcchHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH----hcchhHHHHHHHHhhcccC
Q psy17306 659 TRPDFAVAWSNLGCVFNA----QGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKE----ARIFDRANTLFYVSSYFMI 729 (904)
Q Consensus 659 ~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~a~~~~~ 729 (904)
|.++.++++||.+|.. ..++++|+.+|+++.+. .++.+.++||.+|.. .++..+|..+|+++.+...
T Consensus 315 --~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 315 --GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp --TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred --CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8889999999999987 44999999999999884 568899999999985 4689999999999998764
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.1e-23 Score=210.42 Aligned_cols=170 Identities=16% Similarity=0.210 Sum_probs=153.5
Q ss_pred HHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q psy17306 542 VYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621 (904)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 621 (904)
++..+|.++...|++++|+..|++ ++..+|. +.++...|++++|+..+++++..+|.++.+
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~-----------a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 141 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQK-----------SLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEE 141 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHH-----------HHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHH
Confidence 457888899999999999999999 8888887 456777888999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHH
Q psy17306 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAY 701 (904)
Q Consensus 622 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 701 (904)
+..+|.++...|++++|+. .+.+++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++
T Consensus 142 ~~~~~~~~~~~~~~~~A~~-----------~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 210 (258)
T 3uq3_A 142 ARLEGKEYFTKSDWPNAVK-----------AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAY 210 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhcCHHHHHH-----------HHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999999999999999 66666677888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchhHHHHHHHHhhccc------CChhhHHHHHHHH
Q psy17306 702 INLGNVLKEARIFDRANTLFYVSSYFM------ITDEDIDVILERC 741 (904)
Q Consensus 702 ~~la~~~~~~g~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~ 741 (904)
..+|.++...|++++|+.+|++++... |++..+...+..|
T Consensus 211 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 211 IRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999999999999999999999988 7777776666554
No 38
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.91 E-value=2.3e-22 Score=207.06 Aligned_cols=152 Identities=11% Similarity=-0.019 Sum_probs=108.8
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLG--NVYKERGQLQEALENYRHAVRLKPDFIDG 621 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg--~~~~~~g~~~~A~~~~~~al~~~p~~~~a 621 (904)
..+|.++...|++++|+..+++ ++..+|++.......+ .++...|++++|+..|+++++.+|+++.+
T Consensus 134 ~~l~~~~~~~g~~~~A~~~l~~-----------~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~ 202 (291)
T 3mkr_A 134 AMTVQILLKLDRLDLARKELKK-----------MQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLL 202 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHH-----------HHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHH
Confidence 4555666667777777777777 6666666543333323 22334477888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhcCcCcHHH
Q psy17306 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL-AIHHFEKAVSLDPNFLDA 700 (904)
Q Consensus 622 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~-A~~~~~~al~~~p~~~~a 700 (904)
++++|.++..+|++++|+. .+.++++.+|+++.++.++|.++...|++++ +..+++++++++|+++.+
T Consensus 203 ~~~la~~~~~~g~~~eA~~-----------~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 203 LNGQAACHMAQGRWEAAEG-----------VLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 8888888888888888888 6666667778888888888888888888765 457778888888888776
Q ss_pred HHHHHHHHHHhcchhHHHHHH
Q psy17306 701 YINLGNVLKEARIFDRANTLF 721 (904)
Q Consensus 701 ~~~la~~~~~~g~~~~A~~~~ 721 (904)
.. +..+.+.+++|..-|
T Consensus 272 ~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 272 KE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HH----HHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHHc
Confidence 53 456666666666655
No 39
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.91 E-value=4.8e-23 Score=225.76 Aligned_cols=132 Identities=25% Similarity=0.309 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhh
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIE 658 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~ 658 (904)
..++.++|.++...|++++|+..|++++++.|.. ..++.++|.++...|++++|+..+++++++.+. ..
T Consensus 227 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-----~~ 301 (406)
T 3sf4_A 227 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE-----LN 301 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh-----cC
Confidence 3466777777777777777777777777765544 668889999999999999999988887764322 12
Q ss_pred cCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------CcCcHHHHHHHHHHHHHhcchhHHHHHH
Q psy17306 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL------DPNFLDAYINLGNVLKEARIFDRANTLF 721 (904)
Q Consensus 659 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~la~~~~~~g~~~~A~~~~ 721 (904)
..+..+.++..+|.++...|++++|+.+|++++++ .+....++..+|.++...|+...+...+
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 370 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSI 370 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHH
Confidence 23445778999999999999999999999999998 3445789999999999999886544433
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.91 E-value=2.5e-23 Score=213.98 Aligned_cols=178 Identities=13% Similarity=0.131 Sum_probs=159.4
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 622 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 622 (904)
|..+|.++...|++++|+..|++ ++..+|.++.++..+|.++...|++++|+..|+++++.+|.++.++
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~-----------a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 145 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQA-----------AVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVF 145 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHH-----------HHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHH
Confidence 47788899999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhcC---cC
Q psy17306 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE---IWLAIHHFEKAVSLD---PN 696 (904)
Q Consensus 623 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~~~---p~ 696 (904)
.++|......+++++|+. .+.++++.+|+++.++..+|.++...|+ +++|+..|++++++. |+
T Consensus 146 ~~l~~~~~~~~~~~~A~~-----------~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 214 (272)
T 3u4t_A 146 YELGQAYYYNKEYVKADS-----------SFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA 214 (272)
T ss_dssp HHHHHHHHHTTCHHHHHH-----------HHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccc
Confidence 999955555669999999 6667777888889999999999999999 999999999999985 54
Q ss_pred -----cHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHH
Q psy17306 697 -----FLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCE 742 (904)
Q Consensus 697 -----~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 742 (904)
...++..+|.+|...|++++|+++|++++...|++..+...+....
T Consensus 215 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 215 KYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 3478999999999999999999999999999999887777665554
No 41
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.91 E-value=1.3e-22 Score=208.90 Aligned_cols=110 Identities=7% Similarity=0.006 Sum_probs=86.6
Q ss_pred hcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy17306 552 EGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 631 (904)
Q Consensus 552 ~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 631 (904)
..|++++|+..|++ ++..+|+++.+++++|.++...|++++|+..|+++++.+|+++.++.++|.++..
T Consensus 178 ~~~~~~eA~~~~~~-----------~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~ 246 (291)
T 3mkr_A 178 GGEKLQDAYYIFQE-----------MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH 246 (291)
T ss_dssp CTTHHHHHHHHHHH-----------HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH-----------HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45778888888888 8888888888999999999999999999999999999999999999999999988
Q ss_pred cCCHHH-HHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHH
Q psy17306 632 AGDMEQ-AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687 (904)
Q Consensus 632 ~g~~~~-A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 687 (904)
.|++++ +.. .+.++++.+|+++.+.. ...+.+.+++|+.-|
T Consensus 247 ~g~~~eaa~~-----------~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 247 LGKPPEVTNR-----------YLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp TTCCHHHHHH-----------HHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHH-----------HHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 988876 456 55566677777776543 345555666665554
No 42
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.91 E-value=4.9e-23 Score=225.65 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhh
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIE 658 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~ 658 (904)
..++..+|.++...|++++|+..|++++++.+.. ..++..+|.++...|++++|+..+++++++.+ ...
T Consensus 267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~ 341 (406)
T 3sf4_A 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR-----EVG 341 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----HTT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----Hhc
Confidence 4567777888888888888888888887764332 56888999999999999999998888886332 223
Q ss_pred cCcchHHHHHHHHHHHHhCCCHHH
Q psy17306 659 TRPDFAVAWSNLGCVFNAQGEIWL 682 (904)
Q Consensus 659 ~~p~~~~a~~~lg~~~~~~g~~~~ 682 (904)
..+....++..+|.++...|+...
T Consensus 342 ~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 342 DKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCcchhHHHHHHHHHHHHhhHhHH
Confidence 445667889999999999887643
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.89 E-value=2.9e-22 Score=202.01 Aligned_cols=220 Identities=22% Similarity=0.244 Sum_probs=182.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
.+.+++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHH
Q psy17306 87 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDL 166 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 166 (904)
...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHH
Q psy17306 167 YCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE 246 (904)
Q Consensus 167 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~ 246 (904)
+ .+++...|.++.++..+|.++..
T Consensus 182 ~--------------------------------------------------------~~~~~~~~~~~~~~~~la~~~~~ 205 (243)
T 2q7f_A 182 F--------------------------------------------------------AAVTEQDPGHADAFYNAGVTYAY 205 (243)
T ss_dssp H--------------------------------------------------------HHHHHHCTTCHHHHHHHHHHHHH
T ss_pred H--------------------------------------------------------HHHHHhCcccHHHHHHHHHHHHH
Confidence 8 57778888889999999999999
Q ss_pred hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy17306 247 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 282 (904)
Q Consensus 247 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (904)
.|++++|+.+|+++++.+|+++.++..++.+....+
T Consensus 206 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 206 KENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp TTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred ccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 999999999999999999999999888887765544
No 44
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.89 E-value=5.9e-22 Score=189.95 Aligned_cols=170 Identities=24% Similarity=0.332 Sum_probs=163.2
Q ss_pred HHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q psy17306 540 KYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 619 (904)
Q Consensus 540 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 619 (904)
..+|..+|.++...|++++|+..|++ +++.+|+++.++..+|.++...|++++|+..+.+++...|+++
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~-----------al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~ 73 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKK-----------VLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA 73 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH-----------HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH
Confidence 35789999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH
Q psy17306 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699 (904)
Q Consensus 620 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 699 (904)
.++..+|.++...++++.|+. .+.+++..+|+++.++..+|.++..+|++++|+..|+++++++|.++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~a~~-----------~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 142 (184)
T 3vtx_A 74 EAYYILGSANFMIDEKQAAID-----------ALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIR 142 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhh
Confidence 999999999999999999999 777777888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhcccCCh
Q psy17306 700 AYINLGNVLKEARIFDRANTLFYVSSYFMITD 731 (904)
Q Consensus 700 a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 731 (904)
++.++|.+|..+|++++|+++|+++++..|++
T Consensus 143 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 143 AYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 99999999999999999999999999987643
No 45
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.89 E-value=2.3e-22 Score=230.63 Aligned_cols=168 Identities=33% Similarity=0.508 Sum_probs=161.0
Q ss_pred HHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q psy17306 541 YVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 620 (904)
Q Consensus 541 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (904)
.+|+++|.++..+|++++|+..|++ +++.+|+++.+++++|.++..+|++++|+..|+++++++|+++.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~k-----------Al~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~ 78 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRK-----------ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 78 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH-----------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 3459999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHH
Q psy17306 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700 (904)
Q Consensus 621 a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 700 (904)
+++++|.++..+|++++|++ .|+++++++|+++.+|+++|.+|..+|++++|+..|++|++++|+++.+
T Consensus 79 a~~nLg~~l~~~g~~~~A~~-----------~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a 147 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQ-----------CYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999999 7777778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcchhHHHHHHHHhhcccCC
Q psy17306 701 YINLGNVLKEARIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 701 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 730 (904)
+.++|.++..+|++++|.+.|+++++..++
T Consensus 148 ~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 148 YCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 999999999999999999999999876543
No 46
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.88 E-value=8.9e-22 Score=216.01 Aligned_cols=54 Identities=26% Similarity=0.222 Sum_probs=48.0
Q ss_pred CchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCC
Q psy17306 230 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGD 283 (904)
Q Consensus 230 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~ 283 (904)
.|....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|+
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 4566788999999999999999999999999988 45567799999999999998
No 47
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.88 E-value=2.2e-21 Score=212.91 Aligned_cols=270 Identities=20% Similarity=0.227 Sum_probs=234.0
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHhhcCHHHHHHHHHHHHhc------Ccc
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNT----GVLLLLSSIHFQCRKLDKSAHFSTLAIKQ------NPL 74 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~ 74 (904)
+..+..++.+|..++..|++++|+..|+++++..|.++ .++..+|.++...|++++|+.++++++.. .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 46678889999999999999999999999999999986 58999999999999999999999999987 677
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCC-----------------HHHHHH
Q psy17306 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGD-----------------MEQAVQ 131 (904)
Q Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~ 131 (904)
...++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 8899999999999999999999999999998 55667799999999999999 999999
Q ss_pred HHHHHHhcC------CChhhHHHHHHHHHHHcCChHHHHHHHH-----------------HHHhhHHHHHHcCCHHHHHH
Q psy17306 132 AYVTALQYN------PDLYCVRSDLGNLLKALGRLDEAKDLYC-----------------VRSDLGNLLKALGRLDEAKN 188 (904)
Q Consensus 132 ~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~-----------------~~~~l~~~~~~~g~~~~A~~ 188 (904)
.+++++++. +....++..+|.++...|++++|+..+. .+..+|.++...|++++|+.
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 999998863 2335688999999999999999999882 56678889999999999999
Q ss_pred HHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC--
Q psy17306 189 LHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD-- 266 (904)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-- 266 (904)
.+++++... ......+....++..+|.++...|++++|+.+|++++...+.
T Consensus 285 ~~~~al~~~---------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 285 HYKRTLALA---------------------------VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp HHHHHHHHH---------------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH---------------------------HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 887432210 001111234788999999999999999999999999987533
Q ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 267 ----FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 267 ----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
...++..+|.++...|++++|+.+|++++++.+..
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 24589999999999999999999999999998876
No 48
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.88 E-value=1.7e-21 Score=216.04 Aligned_cols=213 Identities=19% Similarity=0.154 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCH-HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q psy17306 24 YESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKL-DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHA 102 (904)
Q Consensus 24 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 102 (904)
+++|+..++++....|.++.+++.+|.++...|++ ++|+.+|+++++.+|+++.+++.+|.+|...|++++|+.+|+++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66777888888888999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHc--------CChHHHHH
Q psy17306 103 VRLKPDFIDGYINLAAALVAA---------GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL--------GRLDEAKD 165 (904)
Q Consensus 103 l~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------~~~~~A~~ 165 (904)
++++|+ ..++..+|.++... |++++|+..|+++++++|++..++..+|.++... |++++|+.
T Consensus 164 l~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 164 LTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp HTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 999999 79999999999999 9999999999999999999999999999999988 77888877
Q ss_pred HHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCc---hhHHHHHHHHH
Q psy17306 166 LYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNP---LLAEAYSNLGN 242 (904)
Q Consensus 166 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~lg~ 242 (904)
.| ++++..+| .++.+++.+|.
T Consensus 243 ~~--------------------------------------------------------~~al~~~p~~~~~~~~~~~lg~ 266 (474)
T 4abn_A 243 AY--------------------------------------------------------AQAEKVDRKASSNPDLHLNRAT 266 (474)
T ss_dssp HH--------------------------------------------------------HHHHHHCGGGGGCHHHHHHHHH
T ss_pred HH--------------------------------------------------------HHHHHhCCCcccCHHHHHHHHH
Confidence 77 68888899 99999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17306 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293 (904)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (904)
++...|++++|+..|+++++++|+++.++..++.++...|++++|+..+.+
T Consensus 267 ~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 267 LHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999987654
No 49
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.88 E-value=7.6e-21 Score=202.09 Aligned_cols=108 Identities=26% Similarity=0.347 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhh
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIE 658 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~ 658 (904)
..++..+|.++...|++++|+..|++++++.|.. ..++..+|.++...|++++|+..++++++..+. ..
T Consensus 223 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-----~~ 297 (338)
T 3ro2_A 223 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE-----LK 297 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----HT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-----cC
Confidence 3467777778888888888888888877765443 567888888888888888888877777764332 12
Q ss_pred cCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc
Q psy17306 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697 (904)
Q Consensus 659 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 697 (904)
..+....++..+|.++...|++++|+.+|++++++.+..
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 233446688888999999999999999999998887653
No 50
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=3.6e-19 Score=205.73 Aligned_cols=382 Identities=16% Similarity=0.173 Sum_probs=258.2
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHH
Q psy17306 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPD----FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLG 151 (904)
Q Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 151 (904)
++-.......|...|.+.+|++.+++++ +.|. +......++.+..+. +..+...+..+.-..+ ...+|
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~eIA 1056 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APDIA 1056 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHHHH
Confidence 3344555666667788888888888777 4443 233333344444443 3333333333322111 22367
Q ss_pred HHHHHcCChHHHHHHHHHHHh----hHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHh
Q psy17306 152 NLLKALGRLDEAKDLYCVRSD----LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAI 227 (904)
Q Consensus 152 ~~~~~~~~~~~A~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 227 (904)
.++...|.+++|..+|+.... +...+...+++++|++.+++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aer----------------------------------- 1101 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAER----------------------------------- 1101 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHh-----------------------------------
Confidence 777777777777777743211 12233355666666665541
Q ss_pred hcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCC
Q psy17306 228 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGW 307 (904)
Q Consensus 228 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 307 (904)
.+.+.+|+.+|.++...|++++|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..++..
T Consensus 1102 ---vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~----- 1168 (1630)
T 1xi4_A 1102 ---CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY----- 1168 (1630)
T ss_pred ---cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc-----
Confidence 245899999999999999999999999886 7899999999999999999999999999998876540
Q ss_pred CCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhc
Q psy17306 308 NTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQ 387 (904)
Q Consensus 308 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 387 (904)
+...++.+|..+++
T Consensus 1169 ------------------------------------------------------------------Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1169 ------------------------------------------------------------------VETELIFALAKTNR 1182 (1630)
T ss_pred ------------------------------------------------------------------ccHHHHHHHHhhcC
Confidence 11112222222211
Q ss_pred ccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCc
Q psy17306 388 LVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGK 467 (904)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 467 (904)
T Consensus 1183 -------------------------------------------------------------------------------- 1182 (1630)
T 1xi4_A 1183 -------------------------------------------------------------------------------- 1182 (1630)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCc
Q psy17306 468 TVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEP 547 (904)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 547 (904)
.+....++ ..++. . .+..+|
T Consensus 1183 -----------------------------------------leele~fI--------~~~n~-a----------d~~~iG 1202 (1630)
T 1xi4_A 1183 -----------------------------------------LAELEEFI--------NGPNN-A----------HIQQVG 1202 (1630)
T ss_pred -----------------------------------------HHHHHHHH--------hCCCH-H----------HHHHHH
Confidence 11111110 01111 1 235688
Q ss_pred hhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy17306 548 DLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 627 (904)
Q Consensus 548 ~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~ 627 (904)
..+...|+|++|..+|.+ + ..|..+|.++..+|++++|++.++++ .+..+|...+.
T Consensus 1203 d~le~eg~YeeA~~~Y~k-----------A--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNN-----------V--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCF 1258 (1630)
T ss_pred HHHHhcCCHHHHHHHHHh-----------h--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHH
Confidence 999999999999999988 3 47889999999999999999999988 45688999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy17306 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNV 707 (904)
Q Consensus 628 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 707 (904)
++...|++..|.. +... +..+| +.+..++..|...|.+++|+.+++++|.++|.+...+..+|.+
T Consensus 1259 acve~~Ef~LA~~-----------cgl~-Iiv~~---deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiL 1323 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQM-----------CGLH-IVVHA---DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 1323 (1630)
T ss_pred HHhhhhHHHHHHH-----------HHHh-hhcCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHH
Confidence 9999999999988 3332 33333 3455888889999999999999999999999999999888888
Q ss_pred HHH--hcchhHHHHHHHHhhcccC-----ChhhHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy17306 708 LKE--ARIFDRANTLFYVSSYFMI-----TDEDIDVILERCEAKTEELNKKFEQLGES 758 (904)
Q Consensus 708 ~~~--~g~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 758 (904)
|.+ .++..++++.|.+...+.+ .+..+...+--.+.+.+++++|+..+...
T Consensus 1324 yaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1324 YSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred HHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 754 5688888888887777554 23333444444455566777777554433
No 51
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=5.3e-19 Score=204.35 Aligned_cols=156 Identities=16% Similarity=0.167 Sum_probs=118.3
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
...+.+....|+|..|..+... +..+ ++.+..++..|...|.+++|+..+++++.++|.+...+.
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~------------Iiv~---~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmft 1318 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLH------------IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFT 1318 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHh------------hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHH
Confidence 5566666777777777765543 2223 455668899999999999999999999999999999998
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHhhChhhHHHhhhcCc-----chHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---
Q psy17306 624 NLAAALVAA--GDMEQAVQAYVTALQYNPSCYLKAIETRP-----DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL--- 693 (904)
Q Consensus 624 ~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~l~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--- 693 (904)
.+|.+|.+- ++..++++.|. ..+.+.| +++..|..+..+|.+-|+++.|+...-.....
T Consensus 1319 ELaiLyaKy~peklmEhlk~f~-----------~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~ 1387 (1630)
T 1xi4_A 1319 ELAILYSKFKPQKMREHLELFW-----------SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWK 1387 (1630)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH-----------HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhh
Confidence 999888765 46667777444 4444444 66789999999999999999999544444333
Q ss_pred ---------CcCcHHHHHHHHHHHHHhc---------------chhHHHHHHHHhh
Q psy17306 694 ---------DPNFLDAYINLGNVLKEAR---------------IFDRANTLFYVSS 725 (904)
Q Consensus 694 ---------~p~~~~a~~~la~~~~~~g---------------~~~~A~~~~~~a~ 725 (904)
.+.+++.++.....|...+ +++.++..|+++-
T Consensus 1388 ~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~ 1443 (1630)
T 1xi4_A 1388 EGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVK 1443 (1630)
T ss_pred hHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcC
Confidence 6788999999999999666 6666666665543
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.88 E-value=2e-20 Score=189.74 Aligned_cols=204 Identities=16% Similarity=0.093 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 121 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 121 (904)
+.+++.+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++..+|.+..++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcch
Q psy17306 122 AAGDMEQAVQAYVTALQ--YNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTM 199 (904)
Q Consensus 122 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 199 (904)
..|++++|+..+++++. ..|.+..++..+|.++...|++++|+..+
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-------------------------------- 164 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF-------------------------------- 164 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHH--------------------------------
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHH--------------------------------
Confidence 55555555555555555 44555555555555555555555555555
Q ss_pred hhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy17306 200 KVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 279 (904)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (904)
.+++...|.++.++..+|.++...|++++|+..++++++..|.+..++..++.++.
T Consensus 165 ------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (252)
T 2ho1_A 165 ------------------------EKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAK 220 (252)
T ss_dssp ------------------------HHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred ------------------------HHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHhhCCCc
Q psy17306 280 AAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 280 ~~g~~~~A~~~~~~al~~~p~~ 301 (904)
..|++++|..+++++++..|++
T Consensus 221 ~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 221 VFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTS
T ss_pred HccCHHHHHHHHHHHHHHCCCC
Confidence 5555555555555555555544
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.88 E-value=5.8e-21 Score=182.99 Aligned_cols=171 Identities=22% Similarity=0.378 Sum_probs=117.4
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy17306 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLL 154 (904)
Q Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 154 (904)
++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|++..++..+|.++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhH
Q psy17306 155 KALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLA 234 (904)
Q Consensus 155 ~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (904)
...++++.|...+ .+++..+|.+.
T Consensus 84 ~~~~~~~~a~~~~--------------------------------------------------------~~a~~~~~~~~ 107 (184)
T 3vtx_A 84 FMIDEKQAAIDAL--------------------------------------------------------QRAIALNTVYA 107 (184)
T ss_dssp HHTTCHHHHHHHH--------------------------------------------------------HHHHHHCTTCH
T ss_pred HHcCCHHHHHHHH--------------------------------------------------------HHHHHhCccch
Confidence 6666666666555 45566666666
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 235 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 235 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|++
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 6777777777777777777777777777777777777777777777777777777777777777665
No 54
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.88 E-value=6.1e-21 Score=202.84 Aligned_cols=268 Identities=20% Similarity=0.231 Sum_probs=225.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhhcCHHHHHHHHHHHHhc------CcccH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNN----TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ------NPLLA 76 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~ 76 (904)
....++..|..++..|++++|+..|+++++..|.+ ..++..+|.++...|++++|+.++++++.. .|...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 35678999999999999999999999999999998 468889999999999999999999999887 55568
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCC--------------------HHHHH
Q psy17306 77 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDF------IDGYINLAAALVAAGD--------------------MEQAV 130 (904)
Q Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~ 130 (904)
.++..+|.++...|++++|+..+++++.+.|.. ..++..+|.++...|+ +++|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 899999999999999999999999999885543 3489999999999999 99999
Q ss_pred HHHHHHHhc------CCChhhHHHHHHHHHHHcCChHHHHHHHH-----------------HHHhhHHHHHHcCCHHHHH
Q psy17306 131 QAYVTALQY------NPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------------VRSDLGNLLKALGRLDEAK 187 (904)
Q Consensus 131 ~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~-----------------~~~~l~~~~~~~g~~~~A~ 187 (904)
..+++++.+ .+....++..+|.++...|++++|+..+. .+..+|.++...|++++|+
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999876 23345688999999999999999999882 5667788999999999999
Q ss_pred HHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q psy17306 188 NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 267 (904)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 267 (904)
..+.+++... ......+....++..+|.++...|++++|+.++++++...+..
T Consensus 244 ~~~~~al~~~---------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 244 EYYKKTLLLA---------------------------RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHHHHHH---------------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------------------HhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 9987432210 0011122337788999999999999999999999999875432
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 268 ------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 268 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
..++..+|.++...|++++|..++++++++.+..
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 4588999999999999999999999999987754
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.87 E-value=3.5e-20 Score=184.16 Aligned_cols=214 Identities=18% Similarity=0.091 Sum_probs=153.0
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHH
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLG 83 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 83 (904)
.|..+..++.+|..++..|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++..+|.+..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 35556677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHh-CcHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCCh
Q psy17306 84 NVYKER-GQLQEALENYRHAVR--LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRL 160 (904)
Q Consensus 84 ~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 160 (904)
.++... |++++|+..|++++. ..|....++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 777777 777777777777777 45555667777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCc-hhHHHHHH
Q psy17306 161 DEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNP-LLAEAYSN 239 (904)
Q Consensus 161 ~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 239 (904)
++|...+ ++++...| .+...+..
T Consensus 164 ~~A~~~~--------------------------------------------------------~~~~~~~~~~~~~~~~~ 187 (225)
T 2vq2_A 164 GDADYYF--------------------------------------------------------KKYQSRVEVLQADDLLL 187 (225)
T ss_dssp HHHHHHH--------------------------------------------------------HHHHHHHCSCCHHHHHH
T ss_pred HHHHHHH--------------------------------------------------------HHHHHhCCCCCHHHHHH
Confidence 6666666 45555566 66666666
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy17306 240 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 273 (904)
Q Consensus 240 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 273 (904)
++.++...|++++|..+++.+...+|+++.+...
T Consensus 188 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 188 GWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 6667777777777777777776677776665543
No 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.87 E-value=1.6e-20 Score=190.50 Aligned_cols=212 Identities=16% Similarity=0.082 Sum_probs=203.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
.+.+++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCcHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHH
Q psy17306 87 KERGQLQEALENYRHAVR--LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK 164 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 164 (904)
...|++++|+..|++++. ..|.+..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999 888899999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHH
Q psy17306 165 DLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVY 244 (904)
Q Consensus 165 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~ 244 (904)
..+ ++++...|.+...+..++.++
T Consensus 196 ~~~--------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 219 (252)
T 2ho1_A 196 QYY--------------------------------------------------------DLFAQGGGQNARSLLLGIRLA 219 (252)
T ss_dssp HHH--------------------------------------------------------HHHHTTSCCCHHHHHHHHHHH
T ss_pred HHH--------------------------------------------------------HHHHHhCcCcHHHHHHHHHHH
Confidence 888 688889999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy17306 245 KERGQLQEALENYRHAVRLKPDFIDGYINL 274 (904)
Q Consensus 245 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 274 (904)
...|++++|..+++++++..|+++.+...+
T Consensus 220 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 220 KVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 999999999999999999999998876543
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.87 E-value=5.3e-20 Score=188.97 Aligned_cols=229 Identities=24% Similarity=0.301 Sum_probs=208.9
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhcCcccHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQ----CRKLDKSAHFSTLAIKQNPLLAEAYS 80 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 80 (904)
|..+.+++.+|..+...|++++|+..|+++++ |.++.+++.+|.++.. .+++++|+.+|+++++.+ ++.+++
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 78 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH 78 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 45678899999999999999999999999998 7889999999999999 999999999999999985 789999
Q ss_pred HHHHHHHH----hCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy17306 81 NLGNVYKE----RGQLQEALENYRHAVRLKPDFIDGYINLAAALVA----AGDMEQAVQAYVTALQYNPDLYCVRSDLGN 152 (904)
Q Consensus 81 ~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 152 (904)
.+|.++.. .+++++|+.+|++++..+ ++.++..+|.+|.. .+++++|+.+|+++++.+ ++.++..+|.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~ 154 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHH
Confidence 99999999 999999999999999884 78999999999999 999999999999999976 5778889999
Q ss_pred HHHH----cCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhh
Q psy17306 153 LLKA----LGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIK 228 (904)
Q Consensus 153 ~~~~----~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 228 (904)
++.. .+++++|+..+ ++++.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~--------------------------------------------------------~~a~~ 178 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASY--------------------------------------------------------DKACD 178 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHH--------------------------------------------------------HHHHH
T ss_pred HHHcCCCCCCCHHHHHHHH--------------------------------------------------------HHHHH
Confidence 9988 88888888877 45555
Q ss_pred cCchhHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC
Q psy17306 229 QNPLLAEAYSNLGNVYKE----RGQLQEALENYRHAVRLKPDFIDGYINLAAALVA----AGDMEQAVQAYVTALQYNPL 300 (904)
Q Consensus 229 ~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~ 300 (904)
.. ++.++..+|.++.. .+++++|+.+|+++++.+| +.++..+|.++.. .+++++|+.+|+++++..|+
T Consensus 179 ~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 179 LK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp TT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 43 47889999999999 9999999999999999865 8899999999999 99999999999999999987
Q ss_pred c
Q psy17306 301 L 301 (904)
Q Consensus 301 ~ 301 (904)
.
T Consensus 255 ~ 255 (273)
T 1ouv_A 255 G 255 (273)
T ss_dssp H
T ss_pred H
Confidence 7
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.87 E-value=5.4e-21 Score=192.70 Aligned_cols=205 Identities=21% Similarity=0.191 Sum_probs=180.3
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy17306 41 NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 120 (904)
Q Consensus 41 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 120 (904)
.+..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|++++..+|.+..++..+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchh
Q psy17306 121 VAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMK 200 (904)
Q Consensus 121 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 200 (904)
...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~--------------------------------- 148 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYL--------------------------------- 148 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHH---------------------------------
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999999998888
Q ss_pred hHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy17306 201 VQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 280 (904)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (904)
.+++...|.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++..
T Consensus 149 -----------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 205 (243)
T 2q7f_A 149 -----------------------QRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY 205 (243)
T ss_dssp -----------------------HHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 678888999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCc
Q psy17306 281 AGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 281 ~g~~~~A~~~~~~al~~~p~~ 301 (904)
.|++++|+..++++++..|++
T Consensus 206 ~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 206 KENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp TTCTTHHHHHHHHHHHHCTTC
T ss_pred ccCHHHHHHHHHHHHccCcch
Confidence 999999999999999999998
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.87 E-value=3.5e-20 Score=184.12 Aligned_cols=210 Identities=16% Similarity=0.138 Sum_probs=199.9
Q ss_pred hCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy17306 37 QETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 116 (904)
Q Consensus 37 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 116 (904)
..|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..|++++..+|.+..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhc
Q psy17306 117 AAALVAA-GDMEQAVQAYVTALQ--YNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTEN 193 (904)
Q Consensus 117 a~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 193 (904)
|.++... |++++|+..++++++ .+|.+..++..+|.++...|++++|+..+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-------------------------- 136 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYL-------------------------- 136 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHH--------------------------
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHH--------------------------
Confidence 9999999 999999999999999 67777899999999999999999998888
Q ss_pred CCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC-CCHHHHH
Q psy17306 194 IKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP-DFIDGYI 272 (904)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 272 (904)
.+++...|.++.++..+|.++...|++++|+..+++++...| .+..++.
T Consensus 137 ------------------------------~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 186 (225)
T 2vq2_A 137 ------------------------------KRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLL 186 (225)
T ss_dssp ------------------------------HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred ------------------------------HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 678888999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcc
Q psy17306 273 NLAAALVAAGDMEQAVQAYVTALQYNPLLK 302 (904)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 302 (904)
.++.++...|++++|..+++.+.+..|+++
T Consensus 187 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 187 LGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999883
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.87 E-value=7.2e-21 Score=195.85 Aligned_cols=240 Identities=16% Similarity=0.075 Sum_probs=196.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC
Q psy17306 15 AHREYQAGDYESAERHCMQLWRQE----TNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 90 (904)
Q Consensus 15 a~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 90 (904)
+..+...|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence 334456789999999999999873 4567899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHH
Q psy17306 91 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR 170 (904)
Q Consensus 91 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (904)
++++|+.+|++++..+|.++.++..+|.++...|++++|+..++++++.+|++......++.. ...|++++|+..+...
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQH 170 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988666555543 5668888888887211
Q ss_pred ----------HhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCc----hhHHH
Q psy17306 171 ----------SDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNP----LLAEA 236 (904)
Q Consensus 171 ----------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~ 236 (904)
..++..+...++.++|+..+. +++...| .++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---------------------------------~~~~~~~~~~~~~~~~ 217 (275)
T 1xnf_A 171 FEKSDKEQWGWNIVEFYLGNISEQTLMERLK---------------------------------ADATDNTSLAEHLSET 217 (275)
T ss_dssp HHHSCCCSTHHHHHHHHTTSSCHHHHHHHHH---------------------------------HHCCSHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHhcCHHHHHHHHH---------------------------------HHhcccccccccccHH
Confidence 123444444455555555554 4444444 44789
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17306 237 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291 (904)
Q Consensus 237 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (904)
+..+|.++...|++++|+..|++++..+|++... .+.++...|++++|+..+
T Consensus 218 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 218 NFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999999999999977554 377888999999999887
No 61
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.86 E-value=1.1e-19 Score=186.49 Aligned_cols=157 Identities=20% Similarity=0.253 Sum_probs=140.0
Q ss_pred hhCchhHhh----cCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Q psy17306 544 NVEPDLTRE----GGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE----RGQLQEALENYRHAVRLK 615 (904)
Q Consensus 544 ~~l~~~~~~----~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~ 615 (904)
..+|.++.. .+++++|+..|++ ++..+ ++.+++++|.+|.. .+++++|+.+|+++++.+
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~-----------a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 144 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSK-----------ACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN 144 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHH-----------HHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHH-----------HHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence 556666666 8999999999999 77764 78999999999999 999999999999999986
Q ss_pred CCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHh----CCCHHHHHHHH
Q psy17306 616 PDFIDGYINLAAALVA----AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNA----QGEIWLAIHHF 687 (904)
Q Consensus 616 p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~ 687 (904)
++.+++++|.++.. .+++++|+..|++++ +. +++.+++.+|.+|.. .+++++|+.+|
T Consensus 145 --~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~-----------~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 209 (273)
T 1ouv_A 145 --DGDGCTILGSLYDAGRGTPKDLKKALASYDKAC-----------DL--KDSPGCFNAGNMYHHGEGATKNFKEALARY 209 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-----------HT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred --cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-----------HC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 57899999999999 999999999665554 33 346889999999999 99999999999
Q ss_pred HHHHhcCcCcHHHHHHHHHHHHH----hcchhHHHHHHHHhhcccCC
Q psy17306 688 EKAVSLDPNFLDAYINLGNVLKE----ARIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 688 ~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~ 730 (904)
+++++.+| +.+++++|.+|.. .|++++|+++|+++.+..++
T Consensus 210 ~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 210 SKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 99999976 8899999999999 99999999999999998764
No 62
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.86 E-value=7.5e-20 Score=182.11 Aligned_cols=209 Identities=18% Similarity=0.155 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQET-NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
+..++.+|..++..|++++|+..|++++..+| .+..+++.+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 47899999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHhCcHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHHc
Q psy17306 87 KERGQLQEALENYRHAVRLKPDFI-------DGYINLAAALVAAGDMEQAVQAYVTALQYNPD--LYCVRSDLGNLLKAL 157 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~ 157 (904)
..+|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..|+++++++|+ ++.++..+|.++...
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 166 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN 166 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 999999999999999999999998 67999999999999999999999999999999 899999999999776
Q ss_pred CChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHH
Q psy17306 158 GRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAY 237 (904)
Q Consensus 158 ~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (904)
|+. .+ .++....+.....
T Consensus 167 ~~~-----~~--------------------------------------------------------~~a~~~~~~~~~~- 184 (228)
T 4i17_A 167 GAD-----VL--------------------------------------------------------RKATPLASSNKEK- 184 (228)
T ss_dssp HHH-----HH--------------------------------------------------------HHHGGGTTTCHHH-
T ss_pred HHH-----HH--------------------------------------------------------HHHHhcccCCHHH-
Confidence 543 11 1222333322222
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy17306 238 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 279 (904)
Q Consensus 238 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (904)
..+......+.+++|+.+|+++++++|+++.+...++.+..
T Consensus 185 -~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 185 -YASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 23334455678999999999999999999999988887754
No 63
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.86 E-value=4.3e-20 Score=189.98 Aligned_cols=237 Identities=15% Similarity=0.115 Sum_probs=199.6
Q ss_pred HHHhhc----CchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17306 224 TLAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299 (904)
Q Consensus 224 ~~~~~~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 299 (904)
.+++.. +|.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++..|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 108 (275)
T 1xnf_A 29 EQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 108 (275)
T ss_dssp HHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc
Confidence 466655 4678899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHH
Q psy17306 300 LLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMT 379 (904)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (904)
+++
T Consensus 109 ~~~----------------------------------------------------------------------------- 111 (275)
T 1xnf_A 109 TYN----------------------------------------------------------------------------- 111 (275)
T ss_dssp TCT-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 761
Q ss_pred HHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccc
Q psy17306 380 DLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEG 459 (904)
Q Consensus 380 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~ 459 (904)
T Consensus 112 -------------------------------------------------------------------------------- 111 (275)
T 1xnf_A 112 -------------------------------------------------------------------------------- 111 (275)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHH
Q psy17306 460 AFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARAT 539 (904)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 539 (904)
T Consensus 112 -------------------------------------------------------------------------------- 111 (275)
T 1xnf_A 112 -------------------------------------------------------------------------------- 111 (275)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q psy17306 540 KYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 619 (904)
Q Consensus 540 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 619 (904)
.++..+|.++...|++++|+..|++ ++..+|++......++.+ ...|++++|+..|++++...|.+.
T Consensus 112 -~~~~~la~~~~~~g~~~~A~~~~~~-----------a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~ 178 (275)
T 1xnf_A 112 -YAHLNRGIALYYGGRDKLAQDDLLA-----------FYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQ 178 (275)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred -HHHHHHHHHHHHhccHHHHHHHHHH-----------HHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcch
Confidence 1236778888899999999999999 999999988777666655 566999999999999999999876
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH
Q psy17306 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699 (904)
Q Consensus 620 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 699 (904)
..+. ++.++...++.++|+..+.++++..|. ..|.++.++..+|.++...|++++|+..|+++++++|++..
T Consensus 179 ~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 179 WGWN-IVEFYLGNISEQTLMERLKADATDNTS-------LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH-------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred HHHH-HHHHHHHhcCHHHHHHHHHHHhccccc-------ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 6654 788888889999999966666654332 23455789999999999999999999999999999998754
Q ss_pred HHHHHHHHHHHhcchhHHHHHH
Q psy17306 700 AYINLGNVLKEARIFDRANTLF 721 (904)
Q Consensus 700 a~~~la~~~~~~g~~~~A~~~~ 721 (904)
. .+.++...|++++|++.|
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 4 478899999999999987
No 64
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.86 E-value=1.9e-20 Score=186.36 Aligned_cols=179 Identities=15% Similarity=0.158 Sum_probs=165.8
Q ss_pred HHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q psy17306 542 VYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 620 (904)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (904)
.+..+|.++...|++++|+..|++ ++..+| .+..+++++|.++...|++++|+..|+++++.+|+++.
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~-----------al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 77 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSE-----------YLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLAN 77 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHH-----------HHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHH
Confidence 348999999999999999999999 999998 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFA-------VAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 621 a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
++..+|.++..+|++++|+. .+.++++.+|+++ .++..+|.++...|++++|+..|++++++
T Consensus 78 ~~~~l~~~~~~~~~~~~A~~-----------~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 78 AYIGKSAAYRDMKNNQEYIA-----------TLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcccHHHHHH-----------HHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 99999999999999999999 5555666667766 67999999999999999999999999999
Q ss_pred CcC--cHHHHHHHHHHHHHhcch---------------------------hHHHHHHHHhhcccCChhhHHHHHHHHH
Q psy17306 694 DPN--FLDAYINLGNVLKEARIF---------------------------DRANTLFYVSSYFMITDEDIDVILERCE 742 (904)
Q Consensus 694 ~p~--~~~a~~~la~~~~~~g~~---------------------------~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 742 (904)
+|+ ++.++.++|.+|...|+. ++|+.+|+++++..|++.++...++.+.
T Consensus 147 ~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 147 TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 999 999999999999999998 9999999999999998888877776654
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=2.6e-19 Score=187.03 Aligned_cols=221 Identities=10% Similarity=-0.024 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-------hcCH-------HHHHHHHHHHHh-cCcccHHHHHHHHHHHHHh
Q psy17306 25 ESAERHCMQLWRQETNNTGVLLLLSSIHFQ-------CRKL-------DKSAHFSTLAIK-QNPLLAEAYSNLGNVYKER 89 (904)
Q Consensus 25 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 89 (904)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 4886 999999999999 7999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH-cCChHHHHHHH
Q psy17306 90 GQLQEALENYRHAVRLKPDFID-GYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKA-LGRLDEAKDLY 167 (904)
Q Consensus 90 g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~ 167 (904)
|++++|...|+++++++|.++. +|..+|.++...|++++|+..|+++++..|.+..++...+.+... .|++++|..+|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999987 999999999999999999999999999999888877766655433 57777777776
Q ss_pred HHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHh
Q psy17306 168 CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKER 247 (904)
Q Consensus 168 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 247 (904)
++++..+|+++.++..+|.++...
T Consensus 193 --------------------------------------------------------~~al~~~p~~~~~~~~~~~~~~~~ 216 (308)
T 2ond_A 193 --------------------------------------------------------ELGLKKYGDIPEYVLAYIDYLSHL 216 (308)
T ss_dssp --------------------------------------------------------HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --------------------------------------------------------HHHHHhCCCcHHHHHHHHHHHHHC
Confidence 588888999999999999999999
Q ss_pred CCHHHHHHHHHHHHhh---CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 248 GQLQEALENYRHAVRL---KP-DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 248 g~~~~A~~~~~~al~~---~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
|++++|+..|++++.. .| ....+|..++..+...|+++.|...++++++..|++
T Consensus 217 g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 217 NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 9999999999999996 55 478899999999999999999999999999999987
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.85 E-value=2.1e-20 Score=207.19 Aligned_cols=216 Identities=16% Similarity=0.130 Sum_probs=199.2
Q ss_pred HHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCCh-hHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHH
Q psy17306 512 FKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSI-PITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSN 590 (904)
Q Consensus 512 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~ 590 (904)
...++..+.......|.++..+ ..+|.++...|++ ++|+..|++ +++.+|+++.+|+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~----------~~lg~~~~~~g~~~~~A~~~~~~-----------al~~~p~~~~a~~~ 142 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQAL----------MLKGKALNVTPDYSPEAEVLLSK-----------AVKLEPELVEAWNQ 142 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHH----------HHHHHHHTSSSSCCHHHHHHHHH-----------HHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHH----------HHHHHHHHhccccHHHHHHHHHH-----------HHhhCCCCHHHHHH
Confidence 4445555556666777777666 9999999999999 999999999 99999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhChhhHHHhhhcCc
Q psy17306 591 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA---------GDMEQAVQAYVTALQYNPSCYLKAIETRP 661 (904)
Q Consensus 591 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~l~~~p 661 (904)
+|.+|...|++++|+.+|+++++++|+ ..++.++|.++... |++++|+. .+.++++.+|
T Consensus 143 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~-----------~~~~al~~~p 210 (474)
T 4abn_A 143 LGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR-----------QAKLAVQMDV 210 (474)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHH-----------HHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHH-----------HHHHHHHhCC
Confidence 999999999999999999999999999 79999999999999 99999999 7777778889
Q ss_pred chHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHhcCc---CcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCC
Q psy17306 662 DFAVAWSNLGCVFNAQ--------GEIWLAIHHFEKAVSLDP---NFLDAYINLGNVLKEARIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 662 ~~~~a~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 730 (904)
+++.+|+++|.+|... |++++|+.+|+++++++| .++.+++++|.+|..+|++++|+..|++++...|+
T Consensus 211 ~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 290 (474)
T 4abn_A 211 LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290 (474)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999 999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q psy17306 731 DEDIDVILERCEAKTEELNKKFEQLGESSL 760 (904)
Q Consensus 731 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 760 (904)
+......++.+...++++.++++.++....
T Consensus 291 ~~~a~~~l~~~~~~lg~~~eAi~~~~~~~~ 320 (474)
T 4abn_A 291 WPEPQQREQQLLEFLSRLTSLLESKGKTKP 320 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 999999999999999999999987766543
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.85 E-value=7.3e-20 Score=198.24 Aligned_cols=175 Identities=14% Similarity=0.179 Sum_probs=143.8
Q ss_pred HHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hC-
Q psy17306 542 VYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR-----LK- 615 (904)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~- 615 (904)
++..+|.++...|++++|+..|+++++... .....+..+.++.++|.+|...|++++|+.+|+++++ .+
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAE-----AEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-----HcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 458889999999999999999999333211 0011223456899999999999999999999999999 46
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCC---HHHHHHHHHHHHh
Q psy17306 616 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE---IWLAIHHFEKAVS 692 (904)
Q Consensus 616 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~ 692 (904)
|..+.++.++|.++..+|++++|+..+++++++.+. ..+|.....+..+|.++...|+ +++|+..++++ .
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~ 333 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK------AGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-M 333 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------HTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-T
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-c
Confidence 888899999999999999999999988888874322 1245455557889999999999 88999999887 5
Q ss_pred cCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhccc
Q psy17306 693 LDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFM 728 (904)
Q Consensus 693 ~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~ 728 (904)
..|....++..+|.+|..+|++++|..+|++++...
T Consensus 334 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 334 LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 566678899999999999999999999999998754
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.84 E-value=3.3e-19 Score=193.13 Aligned_cols=243 Identities=11% Similarity=0.064 Sum_probs=185.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHH--HHH--HHHHHhhcCHHHHH-----------HHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQET---NNTGVL--LLL--SSIHFQCRKLDKSA-----------HFSTLA 68 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~--~~l--a~~~~~~g~~~~A~-----------~~~~~a 68 (904)
.....+.....+...+++++|..+++++.+.-+ .+...+ +.+ .+.....++++.+. ..++++
T Consensus 11 ~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i 90 (383)
T 3ulq_A 11 SIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEI 90 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHH
Confidence 345677888889999999999999999865432 344443 222 22333445555555 666654
Q ss_pred HhcCcccH------HHHHHHHHHHHHhCcHHHHHHHHHHHHhc---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17306 69 IKQNPLLA------EAYSNLGNVYKERGQLQEALENYRHAVRL---KPD---FIDGYINLAAALVAAGDMEQAVQAYVTA 136 (904)
Q Consensus 69 l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a 136 (904)
-. .|... ..++.+|.++...|++++|+..|++++.+ .++ .+.++..+|.++...|++++|+..++++
T Consensus 91 ~~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a 169 (383)
T 3ulq_A 91 DK-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169 (383)
T ss_dssp HH-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Hh-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33 23222 24556999999999999999999999987 233 4678999999999999999999999999
Q ss_pred HhcCCCh-------hhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhh
Q psy17306 137 LQYNPDL-------YCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNY 209 (904)
Q Consensus 137 l~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 209 (904)
+++.+.. ..++..+|.++...|++++|+..+ .+|+.+.++
T Consensus 170 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~----------------~~al~~~~~----------------- 216 (383)
T 3ulq_A 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHF----------------QKAYSMAEA----------------- 216 (383)
T ss_dssp HHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHH----------------HHHHHHHHH-----------------
T ss_pred HHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHH----------------HHHHHHHHH-----------------
Confidence 9884432 457788888888888888888887 444444431
Q ss_pred cCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHHcCC
Q psy17306 210 GGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR-----LK-PDFIDGYINLAAALVAAGD 283 (904)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~-p~~~~~~~~la~~~~~~g~ 283 (904)
....+..+.++.++|.++...|++++|+.+|++++. .+ |..+.++..+|.++..+|+
T Consensus 217 -----------------~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 279 (383)
T 3ulq_A 217 -----------------EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK 279 (383)
T ss_dssp -----------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC
T ss_pred -----------------cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC
Confidence 122334467899999999999999999999999999 45 7778899999999999999
Q ss_pred HHHHHHHHHHHHhhCCC
Q psy17306 284 MEQAVQAYVTALQYNPL 300 (904)
Q Consensus 284 ~~~A~~~~~~al~~~p~ 300 (904)
+++|+.+++++++..+.
T Consensus 280 ~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 280 IDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999986553
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.7e-20 Score=195.37 Aligned_cols=257 Identities=22% Similarity=0.236 Sum_probs=195.4
Q ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc--
Q psy17306 2 NDIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQ--------ETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ-- 71 (904)
Q Consensus 2 ~~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 71 (904)
++.|..+.+++.+|..++..|++++|+..++++++. .|....++..+|.++...|++++|+.++++++..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999984 6667889999999999999999999999999987
Q ss_pred ------CcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 72 ------NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAGDMEQAVQAYVTAL 137 (904)
Q Consensus 72 ------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 137 (904)
+|....++..+|.++...|++++|+.+|++++... |....++..+|.++...|++++|+.++++++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47778899999999999999999999999999874 5567789999999999999999999999999
Q ss_pred hc--------CCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcC-CCcchhhHHHHHHh
Q psy17306 138 QY--------NPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENI-KPVTMKVQNAIVCN 208 (904)
Q Consensus 138 ~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~ 208 (904)
.. +|....++..+|.++...|++++|+..+ ++++....... ...
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~----------------~~al~~~~~~~~~~~----------- 233 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLY----------------KEILTRAHEREFGSV----------- 233 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH----------------HHHHHHHHHHHHC-------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH----------------HHHHHHHHHhcCCCC-----------
Confidence 98 6777788999999999999999999988 33333322100 000
Q ss_pred hcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17306 209 YGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 288 (904)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 288 (904)
.............+...+..+...+.+.+|+..+.++...+|..+.++..+|.++...|++++|+
T Consensus 234 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 298 (311)
T 3nf1_A 234 ---------------DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAE 298 (311)
T ss_dssp -------------------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ---------------CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHH
Confidence 00000000123444555556666777777888888888888888888888888888888888888
Q ss_pred HHHHHHHhhCCC
Q psy17306 289 QAYVTALQYNPL 300 (904)
Q Consensus 289 ~~~~~al~~~p~ 300 (904)
.+|++++++.|.
T Consensus 299 ~~~~~al~l~~~ 310 (311)
T 3nf1_A 299 TLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhhc
Confidence 888888887664
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.83 E-value=7.4e-20 Score=209.90 Aligned_cols=175 Identities=34% Similarity=0.521 Sum_probs=140.4
Q ss_pred cCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHH
Q psy17306 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDL 150 (904)
Q Consensus 71 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 150 (904)
..|+++.++.++|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|++++|+..|+++++++|++..++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcC
Q psy17306 151 GNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQN 230 (904)
Q Consensus 151 a~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 230 (904)
|.++...|++++|+..| +++++.+
T Consensus 84 g~~l~~~g~~~~A~~~~--------------------------------------------------------~kAl~l~ 107 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCY--------------------------------------------------------TRAIQIN 107 (723)
T ss_dssp HHHHHHTTCHHHHHHHH--------------------------------------------------------HHHHHHC
T ss_pred HHHHHHcCCHHHHHHHH--------------------------------------------------------HHHHHhC
Confidence 77777777777777776 5777777
Q ss_pred chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 231 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 231 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
|+++.++.++|.++...|++++|+..|+++++++|+++.++.++|.++..+|++++|++.+++++++.|+.
T Consensus 108 P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 77888888888888888888888888888888888888888888888888888888888888888877655
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=2.7e-18 Score=179.22 Aligned_cols=170 Identities=8% Similarity=-0.046 Sum_probs=152.6
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAE-AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 621 (904)
|..+|.++...|++++|...|++ ++..+|.++. +|..+|.++...|++++|+..|+++++..|.+..+
T Consensus 102 ~~~~~~~~~~~~~~~~A~~~~~~-----------al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 170 (308)
T 2ond_A 102 YFAYADYEESRMKYEKVHSIYNR-----------LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV 170 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHH-----------HHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHH
Confidence 36677788889999999999999 9999999886 99999999999999999999999999999999888
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CcC-
Q psy17306 622 YINLAAALVA-AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL---DPN- 696 (904)
Q Consensus 622 ~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~- 696 (904)
+...+.+... .|++++|+. .|.++++.+|+++.+|..+|.++...|++++|+..|++++.. +|+
T Consensus 171 ~~~~a~~~~~~~~~~~~A~~-----------~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~ 239 (308)
T 2ond_A 171 YVTAALMEYYCSKDKSVAFK-----------IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp HHHHHHHHHHTSCCHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred HHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH
Confidence 8877776544 799999999 666667778889999999999999999999999999999995 664
Q ss_pred cHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhH
Q psy17306 697 FLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDI 734 (904)
Q Consensus 697 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 734 (904)
...+|..++..+...|+.++|..++++++...|++.+.
T Consensus 240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 240 SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 78899999999999999999999999999999875433
No 72
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=7.5e-20 Score=190.69 Aligned_cols=332 Identities=17% Similarity=0.179 Sum_probs=161.4
Q ss_pred HHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17306 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 131 (904)
Q Consensus 52 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 131 (904)
....|+.++|.+++++. +.+.+|..+|.++...|++++|+..|.++ .++..+...+.++...|++++|+.
T Consensus 13 l~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 34567778888888776 22457888888888888888888888663 345577777788888888888888
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcC
Q psy17306 132 AYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG 211 (904)
Q Consensus 132 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (904)
+++.+.+..++ +.+...++.+|.+.|++.++..++
T Consensus 83 yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~-------------------------------------------- 117 (449)
T 1b89_A 83 YLQMARKKARE-SYVETELIFALAKTNRLAELEEFI-------------------------------------------- 117 (449)
T ss_dssp ---------------------------CHHHHTTTT--------------------------------------------
T ss_pred HHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHH--------------------------------------------
Confidence 88777775333 566677777777777777765544
Q ss_pred CCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17306 212 RKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291 (904)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (904)
+ .|+ ..++..+|..+...|+|++|..+|.++ ..|..+|.++.++|++++|++.+
T Consensus 118 -------------~----~pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~ 171 (449)
T 1b89_A 118 -------------N----GPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGA 171 (449)
T ss_dssp -------------T----CC-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHH
T ss_pred -------------c----CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHH
Confidence 0 132 347888888888888888888888875 35778888888888888888888
Q ss_pred HHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCC
Q psy17306 292 VTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFG 371 (904)
Q Consensus 292 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (904)
+++. +|.
T Consensus 172 ~KA~--~~~----------------------------------------------------------------------- 178 (449)
T 1b89_A 172 RKAN--STR----------------------------------------------------------------------- 178 (449)
T ss_dssp HHHT--CHH-----------------------------------------------------------------------
T ss_pred HHcC--Cch-----------------------------------------------------------------------
Confidence 8771 110
Q ss_pred cchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCc
Q psy17306 372 GSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPS 451 (904)
Q Consensus 372 ~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~ 451 (904)
T Consensus 179 -------------------------------------------------------------------------------- 178 (449)
T 1b89_A 179 -------------------------------------------------------------------------------- 178 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcc
Q psy17306 452 LSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPN 531 (904)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 531 (904)
T Consensus 179 -------------------------------------------------------------------------------- 178 (449)
T 1b89_A 179 -------------------------------------------------------------------------------- 178 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17306 532 YVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHA 611 (904)
Q Consensus 532 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 611 (904)
+|...+.++...|+++.|..+... +..+|+. ...+..+|.+.|++++|+..++++
T Consensus 179 ----------~Wk~v~~aCv~~~ef~lA~~~~l~------------L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 179 ----------TWKEVCFACVDGKEFRLAQMCGLH------------IVVHADE---LEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp ----------HHHHHHHHHHHTTCHHHHHHTTTT------------TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------hHHHHHHHHHHcCcHHHHHHHHHH------------HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 113333445556677777544433 2245544 335888899999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhChhhHHHhhhcCc-----chHHHHHHHHHHHHhCCCHHHHH
Q psy17306 612 VRLKPDFIDGYINLAAALVAA--GDMEQAVQAYVTALQYNPSCYLKAIETRP-----DFAVAWSNLGCVFNAQGEIWLAI 684 (904)
Q Consensus 612 l~~~p~~~~a~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~l~~~p-----~~~~a~~~lg~~~~~~g~~~~A~ 684 (904)
+.+++.+..++..+|.+|.+- ++..+.++ .|...+.+.| +++..|..+..+|...++++.|+
T Consensus 234 L~le~ah~~~ftel~il~~ky~p~k~~ehl~-----------~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 234 LGLERAHMGMFTELAILYSKFKPQKMREHLE-----------LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp TTSTTCCHHHHHHHHHHHHTTCHHHHHHHHH-----------HHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH-----------HHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 999999999999999988765 35566666 5555556666 67788999999999999999999
Q ss_pred HHHHHHHhc------------CcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHH
Q psy17306 685 HHFEKAVSL------------DPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDID 735 (904)
Q Consensus 685 ~~~~~al~~------------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 735 (904)
...-..... .+.+.++++.....|. +....++..+..++....++..+-
T Consensus 303 ~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~~r~v 363 (449)
T 1b89_A 303 ITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDHTRAV 363 (449)
T ss_dssp HHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCHHHHH
T ss_pred HHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCcHHHH
Confidence 987776555 6778999999888887 777777888888886666655443
No 73
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.81 E-value=5.6e-20 Score=168.43 Aligned_cols=147 Identities=12% Similarity=0.031 Sum_probs=131.4
Q ss_pred hCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy17306 545 VEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 624 (904)
Q Consensus 545 ~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 624 (904)
.+|.++...|++++|+..+++ ++..+|+++.+++.+|.+|...|++++|++.|+++++++|+++.+|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~-----------a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 70 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQG-----------STPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRF 70 (150)
T ss_dssp -----CCCHHHHHHHHHHHHH-----------HSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHH-----------hcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 468888899999999999999 888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHH-HHHHHhcCcCcHHHHHH
Q psy17306 625 LAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHH-FEKAVSLDPNFLDAYIN 703 (904)
Q Consensus 625 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~-~~~al~~~p~~~~a~~~ 703 (904)
+|.++..+|++++|+. .|.++++++|+++.+++++|.++...|++++|... +++|++++|+++.++..
T Consensus 71 lg~~~~~~~~~~~A~~-----------~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l 139 (150)
T 4ga2_A 71 LGLLYELEENTDKAVE-----------CYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKL 139 (150)
T ss_dssp HHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHcCchHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 9999999999999999 77777788899999999999999999999887765 59999999999999999
Q ss_pred HHHHHHHhcc
Q psy17306 704 LGNVLKEARI 713 (904)
Q Consensus 704 la~~~~~~g~ 713 (904)
++.++..+|+
T Consensus 140 ~~~ll~~~G~ 149 (150)
T 4ga2_A 140 KEQLLDCEGE 149 (150)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHHHhCc
Confidence 9999888775
No 74
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.80 E-value=1.7e-18 Score=176.22 Aligned_cols=213 Identities=13% Similarity=0.102 Sum_probs=164.1
Q ss_pred hhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC---
Q psy17306 36 RQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL---AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF--- 109 (904)
Q Consensus 36 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 109 (904)
...|.++..++.+|..++..|++++|+..|+++++.+|++ +.+++.+|.++...|++++|+..|++++...|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 4567788888888888888888888888888888888877 7888888888888888888888888888887744
Q ss_pred HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcC
Q psy17306 110 IDGYINLAAALVA--------AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALG 181 (904)
Q Consensus 110 ~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g 181 (904)
+.+++.+|.++.. .|++++|+..|+++++.+|++..+...+..+....+... ..+..+|.++...|
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~------~~~~~la~~~~~~g 162 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLA------RKQYEAARLYERRE 162 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHcc
Confidence 5678888888888 888888888888888888887666544433332222221 22455667777777
Q ss_pred CHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCch---hHHHHHHHHHHHHHh----------C
Q psy17306 182 RLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL---LAEAYSNLGNVYKER----------G 248 (904)
Q Consensus 182 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~lg~~~~~~----------g 248 (904)
++++|+..++ +++...|+ .+.+++.+|.++... |
T Consensus 163 ~~~~A~~~~~---------------------------------~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~ 209 (261)
T 3qky_A 163 LYEAAAVTYE---------------------------------AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPE 209 (261)
T ss_dssp CHHHHHHHHH---------------------------------HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHH
T ss_pred CHHHHHHHHH---------------------------------HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccc
Confidence 7777777775 77777776 678999999999977 9
Q ss_pred CHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHH
Q psy17306 249 QLQEALENYRHAVRLKPDFI---DGYINLAAALVAAGDMEQA 287 (904)
Q Consensus 249 ~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A 287 (904)
++++|+..|+++++..|+++ .+...++.++...++++++
T Consensus 210 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 210 RYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999985 4566677777776666544
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=1e-18 Score=183.38 Aligned_cols=182 Identities=22% Similarity=0.278 Sum_probs=147.7
Q ss_pred CcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q psy17306 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL--------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY---- 139 (904)
Q Consensus 72 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 139 (904)
+|....++..+|.++...|++++|+..|++++.+ .|....++..+|.++...|++++|+..+++++..
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 5667778888888888888888888888888874 5556778888888888888888888888888876
Q ss_pred ----CCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcc
Q psy17306 140 ----NPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPT 215 (904)
Q Consensus 140 ----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (904)
.|....++..+|.++...|++++|+..+ .+++.....
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----------------~~a~~~~~~----------------------- 143 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC----------------KRALEIREK----------------------- 143 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH----------------HHHHHHHHH-----------------------
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHH----------------HHHHHHHHH-----------------------
Confidence 3555678888999999999998888888 334433321
Q ss_pred hHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHH
Q psy17306 216 TLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL--------KPDFIDGYINLAAALVAAGDMEQA 287 (904)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A 287 (904)
......|....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|
T Consensus 144 ---------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 214 (311)
T 3nf1_A 144 ---------VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA 214 (311)
T ss_dssp ---------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred ---------hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 011335777889999999999999999999999999998 666778999999999999999999
Q ss_pred HHHHHHHHhhCCCc
Q psy17306 288 VQAYVTALQYNPLL 301 (904)
Q Consensus 288 ~~~~~~al~~~p~~ 301 (904)
+..++++++..|..
T Consensus 215 ~~~~~~al~~~~~~ 228 (311)
T 3nf1_A 215 ETLYKEILTRAHER 228 (311)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999876543
No 76
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.80 E-value=1.8e-18 Score=168.60 Aligned_cols=167 Identities=18% Similarity=0.116 Sum_probs=150.1
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHH----------------HHHHHHHcCCHHHHHH
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSN----------------LGNVYKERGQLQEALE 606 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~----------------lg~~~~~~g~~~~A~~ 606 (904)
+...|..+...|++++|+..|++ ++..+|+++.+++. +|.++...|++++|+.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~-----------al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQ-----------TIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-----------HHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 47788899999999999999999 99999999999999 9999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCC--HHHHH
Q psy17306 607 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE--IWLAI 684 (904)
Q Consensus 607 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~--~~~A~ 684 (904)
.|+++++++|+++.+++++|.++...|++++|+. .|.++++++|+++.+++++|.+|...|+ ...+.
T Consensus 76 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-----------~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 76 FYKELLQKAPNNVDCLEACAEMQVCRGQEKDALR-----------MYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999999999999 7777888899999999999999987764 55678
Q ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChh
Q psy17306 685 HHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDE 732 (904)
Q Consensus 685 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 732 (904)
..|++++..+|. ..+++++|.++...|++++|+.+|++++...|+.+
T Consensus 145 ~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 145 TDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 888888765543 45788999999999999999999999999999754
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.80 E-value=1.3e-17 Score=179.88 Aligned_cols=174 Identities=17% Similarity=0.171 Sum_probs=143.9
Q ss_pred HHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCC
Q psy17306 542 VYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR-----LKP 616 (904)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p 616 (904)
++..+|.++...|++++|+..|+++++.+. .....+..+.++.++|.++...|++++|+..|+++++ .+|
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAM-----DIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 458889999999999999999999333221 0011123467899999999999999999999999999 788
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhc
Q psy17306 617 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE---IWLAIHHFEKAVSL 693 (904)
Q Consensus 617 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~~ 693 (904)
..+.++.++|.++..+|++++|+..+++++++.+. ..+|.....+..++.++...|+ +.+|+.++++ ...
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~ 331 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA------RSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNL 331 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT------TCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCC
Confidence 88899999999999999999999988888875432 1245566678889999999999 8999999887 344
Q ss_pred CcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcc
Q psy17306 694 DPNFLDAYINLGNVLKEARIFDRANTLFYVSSYF 727 (904)
Q Consensus 694 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 727 (904)
.|....++..+|.+|...|++++|..+|+++++.
T Consensus 332 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 332 HAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5667788999999999999999999999999764
No 78
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=1.3e-19 Score=188.83 Aligned_cols=373 Identities=13% Similarity=0.104 Sum_probs=198.3
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHH
Q psy17306 18 EYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALE 97 (904)
Q Consensus 18 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 97 (904)
.-..|++++|.++++++ +++.+|..+|.++...|++++|++.|.++ .++..+...+.++...|++++|+.
T Consensus 13 l~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 34678899999999998 33569999999999999999999999764 456689999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHH
Q psy17306 98 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLL 177 (904)
Q Consensus 98 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~ 177 (904)
+++.+.+..++ +.+...++.+|.++|++.++.+.++. | +..++..+|..+...|+|++|..+|
T Consensus 83 yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y---------- 145 (449)
T 1b89_A 83 YLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLY---------- 145 (449)
T ss_dssp ---------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHH----------
T ss_pred HHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHH----------
Confidence 99999886444 77788999999999999999888752 4 3458999999999999999998888
Q ss_pred HHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHH
Q psy17306 178 KALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENY 257 (904)
Q Consensus 178 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 257 (904)
.+ ...+..+|.++.+.|++++|++.+
T Consensus 146 ----------------------------------------------~~--------a~n~~~LA~~L~~Lg~yq~AVea~ 171 (449)
T 1b89_A 146 ----------------------------------------------NN--------VSNFGRLASTLVHLGEYQAAVDGA 171 (449)
T ss_dssp ----------------------------------------------HH--------TTCHHHHHHHHHTTTCHHHHHHHH
T ss_pred ----------------------------------------------HH--------hhhHHHHHHHHHHhccHHHHHHHH
Confidence 12 246889999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccc
Q psy17306 258 RHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLG 337 (904)
Q Consensus 258 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 337 (904)
+++ .++.+|...+.++...|+++.|..+... +...|+.
T Consensus 172 ~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~------------------------------------ 209 (449)
T 1b89_A 172 RKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE------------------------------------ 209 (449)
T ss_dssp HHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH------------------------------------
T ss_pred HHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh------------------------------------
Confidence 998 4789999999999999999999544332 1111111
Q ss_pred hhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHH
Q psy17306 338 LASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEK 417 (904)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (904)
T Consensus 210 -------------------------------------------------------------------------------- 209 (449)
T 1b89_A 210 -------------------------------------------------------------------------------- 209 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHH
Q psy17306 418 IDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLD 497 (904)
Q Consensus 418 ~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (904)
T Consensus 210 -------------------------------------------------------------------------------- 209 (449)
T 1b89_A 210 -------------------------------------------------------------------------------- 209 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHH
Q psy17306 498 YLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLA 577 (904)
Q Consensus 498 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~a 577 (904)
. ..+...|.+.|.+++|+.++++ +
T Consensus 210 -----------------------------------l----------~~lv~~Yek~G~~eEai~lLe~-----------a 233 (449)
T 1b89_A 210 -----------------------------------L----------EELINYYQDRGYFEELITMLEA-----------A 233 (449)
T ss_dssp -----------------------------------H----------HHHHHHHHHTTCHHHHHHHHHH-----------H
T ss_pred -----------------------------------H----------HHHHHHHHHCCCHHHHHHHHHH-----------H
Confidence 0 2234557789999999999999 9
Q ss_pred HHhCCchHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Q psy17306 578 IKQNPLLAEAYSNLGNVYKE--RGQLQEALENYRHAVRLKP-----DFIDGYINLAAALVAAGDMEQAVQAYVTALQY-- 648 (904)
Q Consensus 578 l~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-- 648 (904)
+..++.....+..+|.+|.+ .++..++++.|...+.+.| .++..|..+..+|...++++.|+....+....
T Consensus 234 L~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~ 313 (449)
T 1b89_A 234 LGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAW 313 (449)
T ss_dssp TTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTC
T ss_pred hCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhh
Confidence 99999999999999999875 4577888888888888888 78889999999999999999999855443211
Q ss_pred ChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHH--hcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhc
Q psy17306 649 NPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV--SLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSY 726 (904)
Q Consensus 649 ~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al--~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 726 (904)
..+.|...+ ..+.+.+.++.....|. +....++..+..++ .+||+ ....++.+.|...-...+++.+.+
T Consensus 314 ~~~~f~~~~-~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~~------r~v~~~~~~~~l~l~~~yl~~v~~ 384 (449)
T 1b89_A 314 KEGQFKDII-TKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDHT------RAVNYFSKVKQLPLVKPYLRSVQN 384 (449)
T ss_dssp CHHHHHHHH-HHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCHH------HHHHHHHHTTCTTTTHHHHHHHHT
T ss_pred hhHHHHHHH-hchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCcH------HHHHHHHHcCCcHHHHHHHHHHHH
Confidence 122444433 35667888888888887 66678899999999 66763 344566788888889999988776
Q ss_pred ccCChhhHHHHHHH
Q psy17306 727 FMITDEDIDVILER 740 (904)
Q Consensus 727 ~~~~~~~~~~~l~~ 740 (904)
.+ ...|...+..
T Consensus 385 ~n--~~~vnealn~ 396 (449)
T 1b89_A 385 HN--NKSVNESLNN 396 (449)
T ss_dssp TC--CHHHHHHHHH
T ss_pred hh--HHHHHHHHHH
Confidence 54 3344444333
No 79
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.80 E-value=2.4e-18 Score=175.10 Aligned_cols=204 Identities=14% Similarity=0.097 Sum_probs=167.2
Q ss_pred ccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCch---HHHHHHHHHHHHHcCC
Q psy17306 524 RTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLL---AEAYSNLGNVYKERGQ 600 (904)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~ 600 (904)
...|.++... +.+|..+...|++++|+..|++ ++..+|.+ +.+++.+|.++...|+
T Consensus 9 ~~~~~~~~~~----------~~~a~~~~~~g~~~~A~~~~~~-----------~l~~~p~~~~~~~a~~~lg~~~~~~~~ 67 (261)
T 3qky_A 9 RLRHSSPQEA----------FERAMEFYNQGKYDRAIEYFKA-----------VFTYGRTHEWAADAQFYLARAYYQNKE 67 (261)
T ss_dssp --CCSSHHHH----------HHHHHHHHHTTCHHHHHHHHHH-----------HGGGCSCSTTHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHH----------HHHHHHHHHhCCHHHHHHHHHH-----------HHHhCCCCcchHHHHHHHHHHHHHhCc
Confidence 3456666655 9999999999999999999999 99999988 8999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhChhh------HHHhhhcCcch
Q psy17306 601 LQEALENYRHAVRLKPDF---IDGYINLAAALVA--------AGDMEQAVQAYVTALQYNPSC------YLKAIETRPDF 663 (904)
Q Consensus 601 ~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~--------~g~~~~A~~~~~~al~~~~~~------~~~~l~~~p~~ 663 (904)
+++|+..|+++++..|++ +.+++.+|.++.. +|++++|+..|+++++..|+. ........+..
T Consensus 68 ~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~ 147 (261)
T 3qky_A 68 YLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKL 147 (261)
T ss_dssp HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHH
Confidence 999999999999998854 6789999999999 999999999777776665531 11111222223
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC---cHHHHHHHHHHHHHh----------cchhHHHHHHHHhhcccCC
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN---FLDAYINLGNVLKEA----------RIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la~~~~~~----------g~~~~A~~~~~~a~~~~~~ 730 (904)
...++.+|.+|...|++++|+..|+++++.+|+ .+.+++.+|.+|..+ |++++|+.+|++++...|+
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 334499999999999999999999999999998 678999999999987 9999999999999999998
Q ss_pred hhhH---HHHHHHHHHHHHHH
Q psy17306 731 DEDI---DVILERCEAKTEEL 748 (904)
Q Consensus 731 ~~~~---~~~l~~~~~~~~~~ 748 (904)
+... ...++.+...++++
T Consensus 228 ~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 228 SPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp CTHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHh
Confidence 7543 34445555544444
No 80
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.79 E-value=1e-17 Score=170.16 Aligned_cols=236 Identities=11% Similarity=-0.009 Sum_probs=212.6
Q ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc--CHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 10 GLLELAHREYQAGDY-ESAERHCMQLWRQETNNTGVLLLLSSIHFQCR--KLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
..+.........|.+ ++|+..+.+++..+|++..+|+..+.++...| ++++++.+++.++..+|.+..+|..++.++
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL 113 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLII 113 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 345555566677777 58999999999999999999999999999999 999999999999999999999999999999
Q ss_pred ----HHh---CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCChhhHHHHHHHHHHHc
Q psy17306 87 ----KER---GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME--QAVQAYVTALQYNPDLYCVRSDLGNLLKAL 157 (904)
Q Consensus 87 ----~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 157 (904)
... +++++++.++.++++.+|.+..+|...+.+....|.++ ++++.++++++.+|.|..+|...+.++...
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 777 78999999999999999999999999999999999999 999999999999999999999999998887
Q ss_pred CC------hHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCc
Q psy17306 158 GR------LDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNP 231 (904)
Q Consensus 158 ~~------~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 231 (904)
+. ++++++.+ .+++..+|
T Consensus 194 ~~~~~~~~~~eEl~~~--------------------------------------------------------~~aI~~~p 217 (306)
T 3dra_A 194 KHLATDNTIDEELNYV--------------------------------------------------------KDKIVKCP 217 (306)
T ss_dssp GGGCCHHHHHHHHHHH--------------------------------------------------------HHHHHHCS
T ss_pred cccchhhhHHHHHHHH--------------------------------------------------------HHHHHhCC
Confidence 76 45555444 68999999
Q ss_pred hhHHHHHHHHHHHHHhCCHHH-HHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCc
Q psy17306 232 LLAEAYSNLGNVYKERGQLQE-ALENYRHAVRLK---PDFIDGYINLAAALVAAGDMEQAVQAYVTALQ-YNPLL 301 (904)
Q Consensus 232 ~~~~~~~~lg~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~ 301 (904)
.+..+|+.++.++...|+... ...++.+++..+ |.++.++..++.++.+.|+.++|+++|+.+.+ .+|..
T Consensus 218 ~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir 292 (306)
T 3dra_A 218 QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIR 292 (306)
T ss_dssp SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHH
Confidence 999999999999999998655 445777777766 88999999999999999999999999999997 78877
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.78 E-value=5.5e-17 Score=175.07 Aligned_cols=243 Identities=16% Similarity=0.109 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHH----hhcCHHHHH---------HHHHHHHhcC
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQET---NNTGVLLLLSSIHF----QCRKLDKSA---------HFSTLAIKQN 72 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~----~~g~~~~A~---------~~~~~al~~~ 72 (904)
..++..-..+...+++++|..+++++....+ .+..+++..+...+ ..+.+..+. ..++.+-...
T Consensus 13 ~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~ 92 (378)
T 3q15_A 13 GVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQ 92 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccC
Confidence 3455556667899999999999998755322 34444433322222 223333333 5555543221
Q ss_pred cc-----cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy17306 73 PL-----LAEAYSNLGNVYKERGQLQEALENYRHAVRLKP------DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 141 (904)
Q Consensus 73 p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 141 (904)
.. ....++.+|..+...|++++|+..|++++.+.+ ..+.++..+|.++...|++++|+..+++++++.+
T Consensus 93 ~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 172 (378)
T 3q15_A 93 KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQ 172 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 11 123677899999999999999999999998732 2456899999999999999999999999998744
Q ss_pred C-------hhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCc
Q psy17306 142 D-------LYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKP 214 (904)
Q Consensus 142 ~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (904)
. ...++..+|.++...|++++|+..+ .+|+.+.++
T Consensus 173 ~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~----------------~~al~~~~~---------------------- 214 (378)
T 3q15_A 173 NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHL----------------EAALELAMD---------------------- 214 (378)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH----------------HHHHHHHHH----------------------
T ss_pred hCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHH----------------HHHHHHHHH----------------------
Confidence 3 2456778888888888888888877 444444321
Q ss_pred chHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17306 215 TTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR-----LKPDFIDGYINLAAALVAAGDMEQAVQ 289 (904)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (904)
....+..+.++.++|.++...|++++|+.+|++++. .+|..+.++..+|.++...|++++|+.
T Consensus 215 ------------~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 282 (378)
T 3q15_A 215 ------------IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ 282 (378)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHH
Confidence 112234467899999999999999999999999999 678888999999999999999999999
Q ss_pred HHHHHHhhCCCc
Q psy17306 290 AYVTALQYNPLL 301 (904)
Q Consensus 290 ~~~~al~~~p~~ 301 (904)
+++++++..+..
T Consensus 283 ~~~~al~~~~~~ 294 (378)
T 3q15_A 283 FIEEGLDHITAR 294 (378)
T ss_dssp HHHHHHHHCCTT
T ss_pred HHHHHHHHHHHc
Confidence 999999987764
No 82
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.78 E-value=2.6e-15 Score=169.88 Aligned_cols=453 Identities=10% Similarity=0.016 Sum_probs=300.2
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCc---HHHHHHHH
Q psy17306 23 DYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ---LQEALENY 99 (904)
Q Consensus 23 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~ 99 (904)
...+-+..|++.+..+|.+...|..++......+.++.+...|++++...|.....|...+..-...|+ ++.+...|
T Consensus 47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 355667789999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHhcCC--CCHHHHHHHHHHHHHcCCH----HH----HHHHHHHHHhc----CCChhhHHHHHHHHHHHc--------
Q psy17306 100 RHAVRLKP--DFIDGYINLAAALVAAGDM----EQ----AVQAYVTALQY----NPDLYCVRSDLGNLLKAL-------- 157 (904)
Q Consensus 100 ~~al~~~p--~~~~~~~~la~~~~~~g~~----~~----A~~~~~~al~~----~p~~~~~~~~la~~~~~~-------- 157 (904)
++++...| .++..|..........++. ++ ....|++|+.. +|.+..+|..........
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 99999984 5677888777666665543 33 44778888763 666667777776665432
Q ss_pred -CChHHHHHHHHHHHhh-----HHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHH------
Q psy17306 158 -GRLDEAKDLYCVRSDL-----GNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTL------ 225 (904)
Q Consensus 158 -~~~~~A~~~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~------ 225 (904)
++.+.+..+|.....+ ..++..-..++.. +....... .... .......+...+..
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~-------~~~~~a~~---~~~e---~~~~y~~Ar~~~~e~~~~~~ 273 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQD-------VNQLTARR---HIGE---LSAQYMNARSLYQDWLNITK 273 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHH-------HCTTTHHH---HHHH---HHHHHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHh-------cCcchHHH---HHHH---hhHHHHHHHHHHHHHHHHHH
Confidence 2334444444221110 0111000000000 00000000 0000 00000000000000
Q ss_pred Hhhc-C------------c-------hhHHHHHHHHHHHHHhC-------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy17306 226 AIKQ-N------------P-------LLAEAYSNLGNVYKERG-------QLQEALENYRHAVRLKPDFIDGYINLAAAL 278 (904)
Q Consensus 226 ~~~~-~------------~-------~~~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 278 (904)
.+.. . | .....|......-...+ ........|++++...|.++..|+..+..+
T Consensus 274 ~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~ 353 (679)
T 4e6h_A 274 GLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQ 353 (679)
T ss_dssp TCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 0000 0 1 11223333322221111 123455678888888888888888888888
Q ss_pred HHcCCHHHHH-HHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHH
Q psy17306 279 VAAGDMEQAV-QAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIK 357 (904)
Q Consensus 279 ~~~g~~~~A~-~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (904)
...|+.++|. ..|++++...|.+.
T Consensus 354 ~~~~~~~~a~r~il~rAi~~~P~s~------------------------------------------------------- 378 (679)
T 4e6h_A 354 GEKNTDSTVITKYLKLGQQCIPNSA------------------------------------------------------- 378 (679)
T ss_dssp HHHSCCTTHHHHHHHHHHHHCTTCH-------------------------------------------------------
T ss_pred HhcCcHHHHHHHHHHHHHHhCCCCH-------------------------------------------------------
Confidence 8888777776 88888887777550
Q ss_pred hhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchh
Q psy17306 358 IECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKA 437 (904)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~ 437 (904)
T Consensus 379 -------------------------------------------------------------------------------- 378 (679)
T 4e6h_A 379 -------------------------------------------------------------------------------- 378 (679)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHH
Q psy17306 438 DKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLL 517 (904)
Q Consensus 438 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 517 (904)
T Consensus 379 -------------------------------------------------------------------------------- 378 (679)
T 4e6h_A 379 -------------------------------------------------------------------------------- 378 (679)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCC-----------chHH
Q psy17306 518 DSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNP-----------LLAE 586 (904)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p-----------~~~~ 586 (904)
.+|...+.+....|+++.|..+|++.++.....+.......| ....
T Consensus 379 -----------------------~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 379 -----------------------VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp -----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 012344445556677777777777733321111110111123 2456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhChhhHHHhhhcCcchH
Q psy17306 587 AYSNLGNVYKERGQLQEALENYRHAVRL-KPDFIDGYINLAAALVAAG-DMEQAVQAYVTALQYNPSCYLKAIETRPDFA 664 (904)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~ 664 (904)
+|...+....+.|+.+.|...|.+|++. .+.....|...|.+-...+ +++.|.. .|.++++..|+++
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~-----------ife~~Lk~~p~~~ 504 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACK-----------VLELGLKYFATDG 504 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHH-----------HHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHH-----------HHHHHHHHCCCch
Confidence 8999999999999999999999999998 4455677888888777765 4899999 5555556677888
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCc---CcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHH
Q psy17306 665 VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP---NFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVI 737 (904)
Q Consensus 665 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 737 (904)
..|...+......|+.+.|...|++|+...| ....+|......-...|+.+.+..+++++....|+++.+...
T Consensus 505 ~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f 580 (679)
T 4e6h_A 505 EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEF 580 (679)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 8898999999999999999999999999988 467888888888999999999999999999999987655544
No 83
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.78 E-value=2.6e-19 Score=163.96 Aligned_cols=146 Identities=17% Similarity=0.152 Sum_probs=136.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHH
Q psy17306 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 93 (904)
Q Consensus 14 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 93 (904)
+|..+...|++++|+..+++++..+|.++..++.+|.+|+..|++++|+.+|+++++++|+++.+|+.+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 57778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCChhhHHHHHHHHHHHcCC
Q psy17306 94 EALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA-YVTALQYNPDLYCVRSDLGNLLKALGR 159 (904)
Q Consensus 94 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~~~ 159 (904)
+|+.+|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999887776 599999999999999999999988775
No 84
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.78 E-value=7.8e-18 Score=164.15 Aligned_cols=194 Identities=16% Similarity=0.130 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYK 87 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 87 (904)
...++..|..++..|++++|+..|+++++.+|+++.+++..+.. . .....+.....+|.++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~-----~-------------~~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVD-----K-------------NSEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSC-----T-------------TSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhc-----c-------------hhhhhHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555554442210 0 00011223344999999
Q ss_pred HhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHH--HHH
Q psy17306 88 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDE--AKD 165 (904)
Q Consensus 88 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~--A~~ 165 (904)
..|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.+|...|.... +..
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998876654322 222
Q ss_pred HHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHH
Q psy17306 166 LYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYK 245 (904)
Q Consensus 166 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~ 245 (904)
.+ .+++...|. ..+++.+|.++.
T Consensus 146 ~~--------------------------------------------------------~~~~~~~~~-~~a~~~~g~~~~ 168 (208)
T 3urz_A 146 DY--------------------------------------------------------KKLSSPTKM-QYARYRDGLSKL 168 (208)
T ss_dssp HH--------------------------------------------------------C---CCCHH-HHHHHHHHHHHH
T ss_pred HH--------------------------------------------------------HHHhCCCch-hHHHHHHHHHHH
Confidence 22 233333332 346778899999
Q ss_pred HhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy17306 246 ERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277 (904)
Q Consensus 246 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 277 (904)
..|++++|+.+|+++++++|+. .+...+..+
T Consensus 169 ~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 169 FTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp HHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 9999999999999999999973 344444443
No 85
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.77 E-value=2e-18 Score=200.08 Aligned_cols=191 Identities=13% Similarity=0.057 Sum_probs=176.0
Q ss_pred hhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHH--------hcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCC
Q psy17306 36 RQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAI--------KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 107 (904)
Q Consensus 36 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 107 (904)
..+|.++.+++..| ...|++++|+..+++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 45788888888777 88999999999999999 89999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHH
Q psy17306 108 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAK 187 (904)
Q Consensus 108 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~ 187 (904)
++..+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++ +..|
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~-------------------- 523 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFY-------------------- 523 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHH--------------------
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHH--------------------
Confidence 9999999999999999999999999999999999999999999999999999998 8888
Q ss_pred HHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q psy17306 188 NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 267 (904)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 267 (904)
++++..+|+++.+++++|.++...|++++|+..|+++++++|++
T Consensus 524 ------------------------------------~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 567 (681)
T 2pzi_A 524 ------------------------------------QTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF 567 (681)
T ss_dssp ------------------------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH
T ss_pred ------------------------------------HHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc
Confidence 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHH
Q psy17306 268 IDGYINLAAALVAAGDMEQ 286 (904)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~ 286 (904)
..++.++|.++...++.++
T Consensus 568 ~~a~~~~~~~~~~~~~~~~ 586 (681)
T 2pzi_A 568 TTARLTSAVTLLSGRSTSE 586 (681)
T ss_dssp HHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHccCCCCC
Confidence 9999999999988766333
No 86
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.77 E-value=3.7e-18 Score=150.58 Aligned_cols=121 Identities=26% Similarity=0.307 Sum_probs=113.4
Q ss_pred HHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHh
Q psy17306 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKA 656 (904)
Q Consensus 577 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 656 (904)
+..++|+.+.++.++|.++...|++++|+..|+++++++|.++.++.++|.++..+|++++|+. .+.++
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~-----------~~~~a 73 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALD-----------DCDTC 73 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHH-----------HHHHH
Confidence 4568999999999999999999999999999999999999999999999999999999999999 77777
Q ss_pred hhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy17306 657 IETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708 (904)
Q Consensus 657 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 708 (904)
++++|+++.+|+++|.++..+|++++|+..|+++++++|+++.++.+++.++
T Consensus 74 l~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 74 IRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 7889999999999999999999999999999999999999999999998874
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.77 E-value=4.9e-18 Score=175.53 Aligned_cols=209 Identities=16% Similarity=0.179 Sum_probs=167.7
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHhCcHHHHH
Q psy17306 23 DYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP------LLAEAYSNLGNVYKERGQLQEAL 96 (904)
Q Consensus 23 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~ 96 (904)
++++|+..|+++ |.++...|++++|+..|.+++.+.+ ..+.++..+|.+|..+|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 478888888776 6788899999999999999998743 23679999999999999999999
Q ss_pred HHHHHHHhcCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCh------hhHHHHHHHHHHHcCChHHH
Q psy17306 97 ENYRHAVRLKPDF------IDGYINLAAALVAA-GDMEQAVQAYVTALQYNPDL------YCVRSDLGNLLKALGRLDEA 163 (904)
Q Consensus 97 ~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A 163 (904)
.+|++++.+.|.. ..++..+|.+|... |++++|+.+|++++++.|.+ ..++..+|.++...|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 9999999987643 45889999999996 99999999999999987754 35677778888888888777
Q ss_pred HHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhH-------HH
Q psy17306 164 KDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLA-------EA 236 (904)
Q Consensus 164 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~ 236 (904)
+..| ++++...|.+. .+
T Consensus 178 ~~~~--------------------------------------------------------~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 178 SDIY--------------------------------------------------------SKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHH--------------------------------------------------------HHHHHTTSSCTTTGGGHHHH
T ss_pred HHHH--------------------------------------------------------HHHHHHHhcCCcccHHHHHH
Confidence 7777 45555555432 36
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHH-----HHHHHHHHH--HcCCHHHHHHHHHHHHhhCCCc
Q psy17306 237 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG-----YINLAAALV--AAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 237 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~ 301 (904)
+..+|.++...|++++|+.+|++++.++|..... +..++..+. ..+++++|+..|++++.++|..
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 8899999999999999999999999999987653 445666654 4678999999999998888866
No 88
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.77 E-value=1.2e-16 Score=162.35 Aligned_cols=157 Identities=8% Similarity=0.030 Sum_probs=142.6
Q ss_pred CChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy17306 554 GSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ--EALENYRHAVRLKPDFIDGYINLAAALVA 631 (904)
Q Consensus 554 ~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 631 (904)
+++++++.++.+ ++..+|.+..+|+.++.+....|.++ ++++.+.++++.+|.+..+|...+.+...
T Consensus 124 ~~~~~EL~~~~~-----------~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 124 FDPYREFDILEA-----------MLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS 192 (306)
T ss_dssp CCTHHHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHH-----------HHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 678899999999 99999999999999999999999998 99999999999999999999999999999
Q ss_pred cCC------HHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhcC---cCcHHHH
Q psy17306 632 AGD------MEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL-AIHHFEKAVSLD---PNFLDAY 701 (904)
Q Consensus 632 ~g~------~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~-A~~~~~~al~~~---p~~~~a~ 701 (904)
.|+ ++++++ .+.+++..+|++..+|+.++.++...|+... ...++.+++.++ |.++.++
T Consensus 193 l~~~~~~~~~~eEl~-----------~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 261 (306)
T 3dra_A 193 KKHLATDNTIDEELN-----------YVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFAL 261 (306)
T ss_dssp SGGGCCHHHHHHHHH-----------HHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHH
T ss_pred ccccchhhhHHHHHH-----------HHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHH
Confidence 987 888888 7788888999999999999999999998555 556888888876 8899999
Q ss_pred HHHHHHHHHhcchhHHHHHHHHhhc-ccCChh
Q psy17306 702 INLGNVLKEARIFDRANTLFYVSSY-FMITDE 732 (904)
Q Consensus 702 ~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~ 732 (904)
..+|.++.+.|+.++|+++|+.+.+ ..|-..
T Consensus 262 ~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~ 293 (306)
T 3dra_A 262 ETLAKIYTQQKKYNESRTVYDLLKSKYNPIRS 293 (306)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHhccChHHH
Confidence 9999999999999999999999876 455433
No 89
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.76 E-value=9.7e-18 Score=160.60 Aligned_cols=169 Identities=17% Similarity=0.143 Sum_probs=159.4
Q ss_pred HHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q psy17306 541 YVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 620 (904)
Q Consensus 541 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (904)
..+..+|..+...|++++|+..+++ ++..+|.++.++..+|.++...|++++|+..++++++..|+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 77 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQ-----------VYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK 77 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTT-----------TCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Confidence 4568899999999999999999999 88899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHH
Q psy17306 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700 (904)
Q Consensus 621 a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 700 (904)
++..+|.++...|++++|+. .+.+++..+|+++.++..+|.++...|++++|+..|+++++.+|.++.+
T Consensus 78 ~~~~~a~~~~~~~~~~~A~~-----------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 146 (186)
T 3as5_A 78 VATVLGLTYVQVQKYDLAVP-----------LLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKV 146 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhcCHHHHHH-----------HHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHH
Confidence 99999999999999999999 6666666788889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcchhHHHHHHHHhhcccCCh
Q psy17306 701 YINLGNVLKEARIFDRANTLFYVSSYFMITD 731 (904)
Q Consensus 701 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 731 (904)
+..+|.++...|++++|..+|++++...|++
T Consensus 147 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 147 HRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999998877654
No 90
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.76 E-value=9.9e-18 Score=194.23 Aligned_cols=180 Identities=11% Similarity=-0.034 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHH
Q psy17306 10 GLLELAHREYQAGDYESAERHCMQLW--------RQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSN 81 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 81 (904)
+++..| ...|++++|+..+++++ ..+|+++.+++.+|.++...|++++|+..|+++++.+|++..+++.
T Consensus 396 a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 472 (681)
T 2pzi_A 396 ASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWY 472 (681)
T ss_dssp HHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred hHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHH
Confidence 344444 78999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChH
Q psy17306 82 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLD 161 (904)
Q Consensus 82 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 161 (904)
+|.++...|++++|+..|+++++++|+++.++..+|.++..+|++++ +..|+++++++|++..+++.+|.++...|+++
T Consensus 473 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~ 551 (681)
T 2pzi_A 473 RAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRV 551 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHH
Q psy17306 162 EAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLG 241 (904)
Q Consensus 162 ~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg 241 (904)
+|+..| ++++..+|++..++..+|
T Consensus 552 ~A~~~~--------------------------------------------------------~~al~l~P~~~~a~~~~~ 575 (681)
T 2pzi_A 552 GAVRTL--------------------------------------------------------DEVPPTSRHFTTARLTSA 575 (681)
T ss_dssp HHHHHH--------------------------------------------------------HTSCTTSTTHHHHHHHHH
T ss_pred HHHHHH--------------------------------------------------------HhhcccCcccHHHHHHHH
Confidence 999988 789999999999999999
Q ss_pred HHHHHhCC
Q psy17306 242 NVYKERGQ 249 (904)
Q Consensus 242 ~~~~~~g~ 249 (904)
.++...++
T Consensus 576 ~~~~~~~~ 583 (681)
T 2pzi_A 576 VTLLSGRS 583 (681)
T ss_dssp HHTC----
T ss_pred HHHHccCC
Confidence 99987665
No 91
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.76 E-value=3.4e-17 Score=156.77 Aligned_cols=166 Identities=17% Similarity=0.192 Sum_probs=159.3
Q ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHH
Q psy17306 2 NDIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSN 81 (904)
Q Consensus 2 ~~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 81 (904)
++....+..++.+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+++++++.+|.+..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 81 (186)
T 3as5_A 2 GNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATV 81 (186)
T ss_dssp --CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 44556788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChH
Q psy17306 82 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLD 161 (904)
Q Consensus 82 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 161 (904)
+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|+++
T Consensus 82 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 82 LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy17306 162 EAKDLY 167 (904)
Q Consensus 162 ~A~~~~ 167 (904)
+|...+
T Consensus 162 ~A~~~~ 167 (186)
T 3as5_A 162 EALPHF 167 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999888
No 92
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.76 E-value=2.1e-16 Score=170.40 Aligned_cols=268 Identities=16% Similarity=0.034 Sum_probs=215.1
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc----
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNT-----GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL---- 75 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---- 75 (904)
...+..++.+|..++..|++++|+..+++++...|... .++..+|.++...|++++|...+++++...|..
T Consensus 11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 90 (373)
T 1hz4_A 11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 90 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH
Confidence 34577888999999999999999999999999877643 267889999999999999999999999875542
Q ss_pred --HHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh--
Q psy17306 76 --AEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL-- 143 (904)
Q Consensus 76 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 143 (904)
..++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|...+++++...+..
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 3457899999999999999999999999874 3345678889999999999999999999999987642
Q ss_pred ---hhHHHHHHHHHHHcCChHHHHHHHHHHH------------------hhHHHHHHcCCHHHHHHHHhhcCCCcchhhH
Q psy17306 144 ---YCVRSDLGNLLKALGRLDEAKDLYCVRS------------------DLGNLLKALGRLDEAKNLHTENIKPVTMKVQ 202 (904)
Q Consensus 144 ---~~~~~~la~~~~~~~~~~~A~~~~~~~~------------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 202 (904)
..++..+|.++...|++++|...++... ..+.++...|++++|...+.+.+.....
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~--- 247 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA--- 247 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT---
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCC---
Confidence 3567889999999999999998883211 1223356777777777777654432110
Q ss_pred HHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------CHHHHHHHHH
Q psy17306 203 NAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD------FIDGYINLAA 276 (904)
Q Consensus 203 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~ 276 (904)
..+.....+..+|.++...|++++|...+++++...+. ...++..+|.
T Consensus 248 --------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~ 301 (373)
T 1hz4_A 248 --------------------------NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQ 301 (373)
T ss_dssp --------------------------TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------------------cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 00111335678999999999999999999999876432 2347888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 277 ALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
++...|++++|...+++++...+..
T Consensus 302 ~~~~~g~~~~A~~~l~~al~~~~~~ 326 (373)
T 1hz4_A 302 LYWQAGRKSDAQRVLLDALKLANRT 326 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999876643
No 93
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.76 E-value=8.3e-16 Score=165.72 Aligned_cols=176 Identities=18% Similarity=0.111 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChh------
Q psy17306 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI-----DGYINLAAALVAAGDMEQAVQAYVTALQYNPDLY------ 144 (904)
Q Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------ 144 (904)
..++..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++.+.|...
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 34566777777788888888888888877765442 2567778888888888888888888887654332
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHH
Q psy17306 145 CVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFST 224 (904)
Q Consensus 145 ~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 224 (904)
.++..+|.++...|++++|+..+ ++++.......
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~----------------~~al~~~~~~~------------------------------ 127 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQ----------------EKAFQLINEQH------------------------------ 127 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH----------------HHHHHHHHHTT------------------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH----------------HHHHHHHHHhc------------------------------
Confidence 23556677777777777776666 33333222100
Q ss_pred HHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17306 225 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF-----IDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299 (904)
Q Consensus 225 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 299 (904)
....|....++..+|.++...|++++|..++++++...+.. ..++..+|.++...|++++|...+++++...+
T Consensus 128 --~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 205 (373)
T 1hz4_A 128 --LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG 205 (373)
T ss_dssp --CTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred --cccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 00124456677888888888999999999999888876542 35677788888888888888888887776533
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.76 E-value=5.7e-17 Score=160.38 Aligned_cols=205 Identities=15% Similarity=0.078 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccH---HHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNN---TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLA---EAYSN 81 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~ 81 (904)
+.+++.+|..++..|++++|+..|++++...|.+ ..+++.+|.+++..|++++|+..|+++++.+|++. .+++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 5678889999999999999999999999888876 46888999999999999999999999999888865 37888
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChH
Q psy17306 82 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLD 161 (904)
Q Consensus 82 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 161 (904)
+|.++...|.. ....+..++..+...|++++|+..|+++++.+|++..+...+..+...
T Consensus 84 ~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~----- 142 (225)
T 2yhc_A 84 RGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFL----- 142 (225)
T ss_dssp HHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH-----
T ss_pred HHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH-----
Confidence 88888776632 122345567777778999999999999999999987654332211110
Q ss_pred HHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHH
Q psy17306 162 EAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLG 241 (904)
Q Consensus 162 ~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg 241 (904)
..........+|
T Consensus 143 --------------------------------------------------------------------~~~~~~~~~~~a 154 (225)
T 2yhc_A 143 --------------------------------------------------------------------KDRLAKYEYSVA 154 (225)
T ss_dssp --------------------------------------------------------------------HHHHHHHHHHHH
T ss_pred --------------------------------------------------------------------HHHHHHHHHHHH
Confidence 011123446789
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 242 NVYKERGQLQEALENYRHAVRLKPDFI---DGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
.++...|++++|+..|+++++..|+++ .++..+|.++..+|++++|+..++.+....|++
T Consensus 155 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 155 EYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 999999999999999999999999986 689999999999999999999999999998887
No 95
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.75 E-value=2e-17 Score=170.89 Aligned_cols=219 Identities=12% Similarity=0.024 Sum_probs=175.3
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc--
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETN------NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL-- 75 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 75 (904)
+......+...|..+...|++++|+..|.+++...+. .+.++..+|.+|...|++++|+.+|++++.+.|..
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~ 112 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ 112 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 4445556667788889999999999999999987432 26789999999999999999999999999987653
Q ss_pred ----HHHHHHHHHHHHHh-CcHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChh
Q psy17306 76 ----AEAYSNLGNVYKER-GQLQEALENYRHAVRLKPDF------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 76 ----~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 144 (904)
+.++..+|.+|... |++++|+.+|++++.+.|.. ..++..+|.++..+|++++|+..|++++++.|++.
T Consensus 113 ~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 192 (292)
T 1qqe_A 113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR 192 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence 56899999999996 99999999999999997754 46789999999999999999999999999998765
Q ss_pred h-------HHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchH
Q psy17306 145 C-------VRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTL 217 (904)
Q Consensus 145 ~-------~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (904)
. ++..+|.++...|++++|+..+
T Consensus 193 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~-------------------------------------------------- 222 (292)
T 1qqe_A 193 LSQWSLKDYFLKKGLCQLAATDAVAAARTL-------------------------------------------------- 222 (292)
T ss_dssp TTGGGHHHHHHHHHHHHHHTTCHHHHHHHH--------------------------------------------------
T ss_pred cccHHHHHHHHHHHHHHHHcCCHHHHHHHH--------------------------------------------------
Confidence 3 4677788888888887777777
Q ss_pred HHhhHHHHHhhcCchhHH-----HHHHHHHHHH--HhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy17306 218 ESAHFSTLAIKQNPLLAE-----AYSNLGNVYK--ERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 278 (904)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~-----~~~~lg~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 278 (904)
++++..+|.... .+..++..+. ..+++++|+..|++++.++|.....+..+-...
T Consensus 223 ------~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 223 ------QEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp ------HGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred ------HHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 466666665443 3445566554 467899999999999999888766666655544
No 96
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.75 E-value=5.4e-16 Score=157.94 Aligned_cols=247 Identities=12% Similarity=0.031 Sum_probs=202.6
Q ss_pred HHHHHHHHcCCHH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC----------HHHHHHHHHHHHhcCcccHHHHHH
Q psy17306 13 ELAHREYQAGDYE-SAERHCMQLWRQETNNTGVLLLLSSIHFQCRK----------LDKSAHFSTLAIKQNPLLAEAYSN 81 (904)
Q Consensus 13 ~~a~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~ 81 (904)
.........|+++ +|+..+..++..+|.+..+|+..+.+....+. +++++.+++.++..+|.+..+|..
T Consensus 34 ~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~h 113 (331)
T 3dss_A 34 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHH 113 (331)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3344445678886 79999999999999999999999999988776 789999999999999999999999
Q ss_pred HHHHHHHhCc--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcC
Q psy17306 82 LGNVYKERGQ--LQEALENYRHAVRLKPDFIDGYINLAAALVAAGD-MEQAVQAYVTALQYNPDLYCVRSDLGNLLKALG 158 (904)
Q Consensus 82 la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 158 (904)
++.++...|+ +++++.++.++++.+|.+..+|...+.+....|. ++++++++.++++.+|.|..+|..++.++...+
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHS
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhh
Confidence 9999999994 9999999999999999999999999999999999 699999999999999999999999999988774
Q ss_pred ChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHH
Q psy17306 159 RLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYS 238 (904)
Q Consensus 159 ~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (904)
....+-... -...+.+++++. ++.+++..+|++..+|+
T Consensus 194 ~~~~~~~~~---------~~~~~~~~eEle---------------------------------~~~~ai~~~P~d~SaW~ 231 (331)
T 3dss_A 194 PQPDSGPQG---------RLPENVLLKELE---------------------------------LVQNAFFTDPNDQSAWF 231 (331)
T ss_dssp CCC---------------CCCHHHHHHHHH---------------------------------HHHHHHHHSTTCHHHHH
T ss_pred hcccccccc---------ccchHHHHHHHH---------------------------------HHHHHHHhCCCCHHHHH
Confidence 321110000 000011223333 33689999999999998
Q ss_pred HHHHHHHHh-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCc
Q psy17306 239 NLGNVYKER-----------GQLQEALENYRHAVRLKPDFIDGYINLAAALV---AAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 239 ~lg~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~ 301 (904)
.+..++... +.+++++..++++++..|++...+..++.+.. ..|..++...++.++++++|..
T Consensus 232 Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 232 YHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp HHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence 776666655 56899999999999999999666555554432 3578889999999999999987
No 97
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.74 E-value=1.8e-14 Score=162.97 Aligned_cols=448 Identities=8% Similarity=0.022 Sum_probs=309.7
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC---HHHHHHHHHHHHhcCc--ccHHH
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRK---LDKSAHFSTLAIKQNP--LLAEA 78 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p--~~~~~ 78 (904)
.|..-..|...+......+.+..+...|++++...|.....|...+..-...|. ++.+..+|++++...| .+...
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 355567788888888889999999999999999999999999999999999999 9999999999999883 56778
Q ss_pred HHHHHHHHHHhCcH--------HHHHHHHHHHHhc----CCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHH
Q psy17306 79 YSNLGNVYKERGQL--------QEALENYRHAVRL----KPDFIDGYINLAAALV---------AAGDMEQAVQAYVTAL 137 (904)
Q Consensus 79 ~~~la~~~~~~g~~--------~~A~~~~~~al~~----~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al 137 (904)
|..........++. +.....|++|+.. +|....+|........ ..++.+.+...|++++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88877666655543 3445888888864 6666777766665433 3456788999999999
Q ss_pred hcCCCh--hhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhh------cCCCc------------
Q psy17306 138 QYNPDL--YCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTE------NIKPV------------ 197 (904)
Q Consensus 138 ~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------~~~~~------------ 197 (904)
.+ |.. ...|......-...+... +...+ -.....|..|...+.+ .+...
T Consensus 222 ~i-P~~~~~~~w~~Y~~fe~~~~~~~-a~~~~---------~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~ 290 (679)
T 4e6h_A 222 CQ-PMDCLESMWQRYTQWEQDVNQLT-ARRHI---------GELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESN 290 (679)
T ss_dssp TS-CCSSHHHHHHHHHHHHHHHCTTT-HHHHH---------HHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTT
T ss_pred hC-ccHHHHHHHHHHHHHHHhcCcch-HHHHH---------HHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhcc
Confidence 75 432 233333333222222211 21111 0011122333333321 11110
Q ss_pred -c-------h--hhHHHHH-HhhcCCCc-----chHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHH-HHHHHH
Q psy17306 198 -T-------M--KVQNAIV-CNYGGRKP-----TTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAL-ENYRHA 260 (904)
Q Consensus 198 -~-------~--~~~~~~~-~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~-~~~~~a 260 (904)
+ . ......+ ........ ........|++++...|..+..|+..+..+...|+.++|. ..|+++
T Consensus 291 ~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rA 370 (679)
T 4e6h_A 291 LPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLG 370 (679)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 0 0 0001111 11111100 1123456789999999999999999999999999999997 999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhh
Q psy17306 261 VRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLAS 340 (904)
Q Consensus 261 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 340 (904)
+...|.+...|+.++......|++++|...|++++...+....
T Consensus 371 i~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~------------------------------------- 413 (679)
T 4e6h_A 371 QQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLA------------------------------------- 413 (679)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-------------------------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh-------------------------------------
Confidence 9999999999999999999999999999999999875332100
Q ss_pred hhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhh
Q psy17306 341 AIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDF 420 (904)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (904)
T Consensus 414 -------------------------------------------------------------------------------- 413 (679)
T 4e6h_A 414 -------------------------------------------------------------------------------- 413 (679)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHH
Q psy17306 421 DTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLN 500 (904)
Q Consensus 421 A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 500 (904)
..... .|.....
T Consensus 414 ---~~~~~--~p~~~~~--------------------------------------------------------------- 425 (679)
T 4e6h_A 414 ---ALMED--DPTNESA--------------------------------------------------------------- 425 (679)
T ss_dssp ---HHHHH--STTCHHH---------------------------------------------------------------
T ss_pred ---hhhhc--cCcchhh---------------------------------------------------------------
Confidence 00000 0000000
Q ss_pred HHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHh
Q psy17306 501 ELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQ 580 (904)
Q Consensus 501 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~ 580 (904)
....-.....+|...+.+..+.|..+.|..+|.+ +++.
T Consensus 426 -------------------------------~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~-----------A~~~ 463 (679)
T 4e6h_A 426 -------------------------------INQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK-----------CRRL 463 (679)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-----------HHHT
T ss_pred -------------------------------hhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH-----------HHHh
Confidence 0000000112345555566667888999999999 8776
Q ss_pred -CCchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhh
Q psy17306 581 -NPLLAEAYSNLGNVYKERG-QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIE 658 (904)
Q Consensus 581 -~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~ 658 (904)
.+....+|...|.+....+ +.+.|...|+++++..|+++..|...+......|+.+.|...|++++ .
T Consensus 464 ~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal-----------~ 532 (679)
T 4e6h_A 464 KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSI-----------D 532 (679)
T ss_dssp GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHT-----------T
T ss_pred cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH-----------H
Confidence 4444667777777776665 48999999999999999999999999999999999999999555555 4
Q ss_pred cCc---chHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHH
Q psy17306 659 TRP---DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700 (904)
Q Consensus 659 ~~p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 700 (904)
..| .....|......-...|+.+.+...++++++..|+++.+
T Consensus 533 ~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 533 KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 444 456788888888889999999999999999999987543
No 98
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.74 E-value=1.5e-17 Score=171.53 Aligned_cols=232 Identities=21% Similarity=0.209 Sum_probs=171.9
Q ss_pred HHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc--------CcccHHHHHHH
Q psy17306 19 YQAGDYESAERHCMQLWRQ--------ETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ--------NPLLAEAYSNL 82 (904)
Q Consensus 19 ~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 82 (904)
...|++++|+..|+++++. .|..+.++..+|.++...|++++|+.++++++.. +|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4578888899988888873 3567889999999999999999999999999987 47788899999
Q ss_pred HHHHHHhCcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCChhhH
Q psy17306 83 GNVYKERGQLQEALENYRHAVRL--------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY--------NPDLYCV 146 (904)
Q Consensus 83 a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~ 146 (904)
|.++...|++++|+.+|++++.. +|....++..+|.++...|++++|+..+++++++ .|....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999988 4666789999999999999999999999999998 7777889
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHH
Q psy17306 147 RSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLA 226 (904)
Q Consensus 147 ~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 226 (904)
+..+|.++...|++++|+..+ ++++...... ..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~----------------~~~l~~~~~~-------------------------------~~ 204 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLY----------------KEILTRAHEK-------------------------------EF 204 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH----------------HHHHHHHHHH-------------------------------HS
T ss_pred HHHHHHHHHHcCCHHHHHHHH----------------HHHHHHHHHh-------------------------------cC
Confidence 999999999999999999988 4444443220 00
Q ss_pred hhcCchhHHHHHHHHHHHHHhCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 227 IKQNPLLAEAYSNLGNVYKERGQ------LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 297 (904)
Q Consensus 227 ~~~~~~~~~~~~~lg~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 297 (904)
....+.....+..++......+. +.++...++......|..+.++..+|.++...|++++|+.+|+++++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 01123333444444444443332 333333333333334445566777777777777777777777777654
No 99
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.73 E-value=2.8e-17 Score=144.92 Aligned_cols=121 Identities=28% Similarity=0.302 Sum_probs=96.8
Q ss_pred HHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHH
Q psy17306 34 LWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 113 (904)
Q Consensus 34 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 113 (904)
+..++|+.++++..+|..++..|+|++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|+++.++
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 34567777788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy17306 114 INLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLL 154 (904)
Q Consensus 114 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 154 (904)
+.+|.++..+|++++|+..|+++++++|++..++..++.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 88888888888888888888888888888888777777653
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.72 E-value=2e-17 Score=156.55 Aligned_cols=161 Identities=9% Similarity=-0.053 Sum_probs=144.6
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
...|..+...|++++|+..|++ ++..+|+++.+++.+|.++...|++++|+..|++++..+| ++..+.
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~-----------al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~ 77 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQT-----------LSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKS 77 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-----------SCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH-----------HHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHH
Confidence 7788999999999999999999 9999999999999999999999999999999999999999 887776
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc--HHH
Q psy17306 624 NLAAALV-AAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF--LDA 700 (904)
Q Consensus 624 ~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~a 700 (904)
.++.+.. ..++..+|+. .+.++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. +.+
T Consensus 78 ~~~~~~~~~~~~~~~a~~-----------~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a 146 (176)
T 2r5s_A 78 LIAKLELHQQAAESPELK-----------RLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEV 146 (176)
T ss_dssp HHHHHHHHHHHTSCHHHH-----------HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHH
T ss_pred HHHHHHHHhhcccchHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHH
Confidence 6665533 3233445677 7778888999999999999999999999999999999999999976 669
Q ss_pred HHHHHHHHHHhcchhHHHHHHHHhhcc
Q psy17306 701 YINLGNVLKEARIFDRANTLFYVSSYF 727 (904)
Q Consensus 701 ~~~la~~~~~~g~~~~A~~~~~~a~~~ 727 (904)
+.++|.++..+|+.++|+..|++++.+
T Consensus 147 ~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 147 KKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 999999999999999999999998764
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.72 E-value=9.2e-17 Score=158.87 Aligned_cols=179 Identities=12% Similarity=0.077 Sum_probs=150.9
Q ss_pred HHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 542 VYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLL---AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 618 (904)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (904)
.++.+|..+...|++++|+..|++ ++...|.+ ..+++.+|.++...|++++|+..|+++++.+|++
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~-----------~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~ 74 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEA-----------LDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 74 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHH-----------HHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH-----------HHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence 458889999999999999999999 99888865 4799999999999999999999999999999998
Q ss_pred HH---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHhhChhh------HHHhhhcCcchHHHHHHHH
Q psy17306 619 ID---GYINLAAALVA------------------AGDMEQAVQAYVTALQYNPSC------YLKAIETRPDFAVAWSNLG 671 (904)
Q Consensus 619 ~~---a~~~lg~~~~~------------------~g~~~~A~~~~~~al~~~~~~------~~~~l~~~p~~~~a~~~lg 671 (904)
+. +++.+|.++.. .|++++|+..|+++++..|+. ..+...+..........+|
T Consensus 75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a 154 (225)
T 2yhc_A 75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVA 154 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 89999999886 578999999777777666541 1111112222233447889
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCcCcH---HHHHHHHHHHHHhcchhHHHHHHHHhhcccCCh
Q psy17306 672 CVFNAQGEIWLAIHHFEKAVSLDPNFL---DAYINLGNVLKEARIFDRANTLFYVSSYFMITD 731 (904)
Q Consensus 672 ~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 731 (904)
.+|...|++++|+..|+++++..|+++ .+++.+|.++.++|++++|++.|+++....|+.
T Consensus 155 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 155 EYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 999999999999999999999999875 789999999999999999999999988877754
No 102
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.72 E-value=1.6e-17 Score=150.59 Aligned_cols=116 Identities=12% Similarity=0.078 Sum_probs=79.6
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHH
Q psy17306 606 ENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685 (904)
Q Consensus 606 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 685 (904)
..++++++++|+++.+++.+|.++...|++++|+. .|.+++..+|+++.+|+++|.++..+|++++|+.
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~-----------~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~ 91 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEV-----------FFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAAD 91 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHH
Confidence 44556666677777777777777777777777777 5555556666667777777777777777777777
Q ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChh
Q psy17306 686 HFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDE 732 (904)
Q Consensus 686 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 732 (904)
+|+++++++|+++.+++++|.+|..+|++++|+.+|++++...++++
T Consensus 92 ~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 92 LYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 77777777777777777777777777777777777777776666543
No 103
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.70 E-value=3e-16 Score=161.74 Aligned_cols=212 Identities=18% Similarity=0.200 Sum_probs=174.3
Q ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc---
Q psy17306 3 DIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQ--------ETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ--- 71 (904)
Q Consensus 3 ~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 71 (904)
+.|..+.++..+|..+...|++++|+..+++++.. .|..+.++..+|.++...|++++|+.++++++..
T Consensus 38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 117 (283)
T 3edt_B 38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 44778899999999999999999999999999977 3566789999999999999999999999999987
Q ss_pred -----CcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 72 -----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL--------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 138 (904)
Q Consensus 72 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 138 (904)
+|....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+..++++++
T Consensus 118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5888999999999999999999999999999998 677788999999999999999999999999998
Q ss_pred c---------CCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhh
Q psy17306 139 Y---------NPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNY 209 (904)
Q Consensus 139 ~---------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 209 (904)
+ .+.....+..++..+...+....+... ..+...+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~------------------- 241 (283)
T 3edt_B 198 RAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-----------------GEYGSWY------------------- 241 (283)
T ss_dssp HHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-----------------------------------------------
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-----------------HHHHHHH-------------------
Confidence 7 444455666666666555444333221 1222222
Q ss_pred cCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q psy17306 210 GGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 264 (904)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 264 (904)
.......|..+.++..+|.++...|++++|+.+|+++++..
T Consensus 242 --------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 242 --------------KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp ---------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred --------------HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 23334567888999999999999999999999999998753
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.70 E-value=4.7e-17 Score=147.51 Aligned_cols=111 Identities=14% Similarity=0.038 Sum_probs=107.2
Q ss_pred HHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHh
Q psy17306 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKA 656 (904)
Q Consensus 577 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 656 (904)
++..+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|+++|.++..+|++++|+. .|.++
T Consensus 28 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~-----------~~~~a 96 (151)
T 3gyz_A 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAAD-----------LYAVA 96 (151)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHH-----------HHHHH
Confidence 7888999999999999999999999999999999999999999999999999999999999999 77788
Q ss_pred hhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcH
Q psy17306 657 IETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL 698 (904)
Q Consensus 657 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 698 (904)
++++|+++.+|+++|.+|..+|++++|+..|++++++.|+.+
T Consensus 97 l~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 97 FALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888999999999999999999999999999999999999875
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.69 E-value=2.9e-16 Score=161.47 Aligned_cols=162 Identities=10% Similarity=-0.018 Sum_probs=153.8
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
..+|..+...|++++|+..|++ ++..+|+++.+++.+|.++...|++++|+..|++++..+|+......
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~-----------al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~ 189 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXD-----------AWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGL 189 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHH-----------HHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHH
Confidence 8899999999999999999999 99999999999999999999999999999999999999998887888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc--HHHH
Q psy17306 624 NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF--LDAY 701 (904)
Q Consensus 624 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~ 701 (904)
..+..+...++.++|+. .+.+++..+|+++.+++++|.++...|++++|+..|+++++.+|++ +.++
T Consensus 190 ~~~~~l~~~~~~~~a~~-----------~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQ-----------QLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp HHHHHHHHHHTSCHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred HHHHHHHhhcccCccHH-----------HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 88888999999999999 7778888999999999999999999999999999999999999998 8999
Q ss_pred HHHHHHHHHhcchhHHHHHHHHhhcc
Q psy17306 702 INLGNVLKEARIFDRANTLFYVSSYF 727 (904)
Q Consensus 702 ~~la~~~~~~g~~~~A~~~~~~a~~~ 727 (904)
.++|.++...|+.++|...|++++.+
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 99999999999999999999998764
No 106
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.69 E-value=1e-16 Score=168.61 Aligned_cols=184 Identities=18% Similarity=0.108 Sum_probs=161.0
Q ss_pred hhHHHHHHHhccc----ccccCCCCcchHHHHHHHHHHHhhCchhHh------------hcCChhHHHHHHHHHhhhhhh
Q psy17306 509 PNKFKAYLLDSGK----SWRTNPEHPNYVAAARATKYVYNVEPDLTR------------EGGSIPITLTFECRKLDKSAH 572 (904)
Q Consensus 509 ~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~l~~a~~ 572 (904)
...+..++..+.. .+.+.|+.. |...|.... ..+++++|+..+++
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~a------------yg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~------- 138 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSYA------------FGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEM------- 138 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTTT------------TTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGC-------
T ss_pred chHHHHHHhcCCCCCeEEEEECCccc------------cCcCCCCccCCCCCCeEEEEEEEeecccccchhcC-------
Confidence 4567777888877 888888752 244554432 56777888888877
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---------------HHHHHHHHHHHHHcCCHHH
Q psy17306 573 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF---------------IDGYINLAAALVAAGDMEQ 637 (904)
Q Consensus 573 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~ 637 (904)
++..+|..+.++..+|.++...|++++|+..|+++++++|++ ..++.++|.++..+|++++
T Consensus 139 ----a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~ 214 (336)
T 1p5q_A 139 ----NSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA 214 (336)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 888899999999999999999999999999999999999998 6899999999999999999
Q ss_pred HHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHH
Q psy17306 638 AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717 (904)
Q Consensus 638 A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 717 (904)
|+. .+.++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++.++.++|.++..+|++++|
T Consensus 215 A~~-----------~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 215 AIE-----------SCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----------HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999 777777888999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHhhc
Q psy17306 718 -NTLFYVSSY 726 (904)
Q Consensus 718 -~~~~~~a~~ 726 (904)
...|++++.
T Consensus 284 ~~~~~~~~~~ 293 (336)
T 1p5q_A 284 EKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 456665544
No 107
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.68 E-value=1.4e-16 Score=145.19 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=91.9
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHH
Q psy17306 606 ENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685 (904)
Q Consensus 606 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 685 (904)
..|++++.++|++..+++.+|.++...|++++|+. .|.+++..+|+++.+|+++|.++...|++++|+.
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~-----------~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 76 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHX-----------VFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIH 76 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHH-----------HHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHH
Confidence 45667777777777777777777777777777777 5555556667777777777777777777777777
Q ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHH
Q psy17306 686 HFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEEL 748 (904)
Q Consensus 686 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 748 (904)
.|++++.++|+++.+++++|.++..+|++++|+.+|++++...|++........++...+..+
T Consensus 77 ~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 139 (148)
T 2vgx_A 77 SYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAI 139 (148)
T ss_dssp HHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777666555555555555444433
No 108
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.67 E-value=6.6e-15 Score=150.41 Aligned_cols=237 Identities=10% Similarity=-0.043 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCR-KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYK 87 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 87 (904)
.++-.........+..++|+..+.+++..+|.+..+|+..+.++...| .+++++.+++.++..+|.+..+|..++.++.
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 333333444445556679999999999999999999999999999999 5999999999999999999999999999999
Q ss_pred Hh-C-cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCChhhHHHHHHHHHHHc
Q psy17306 88 ER-G-QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME--------QAVQAYVTALQYNPDLYCVRSDLGNLLKAL 157 (904)
Q Consensus 88 ~~-g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 157 (904)
.. + ++++++.++.++++.+|.+..+|...+.+....|.++ ++++.++++++.+|.|..+|...+.++...
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 98 8 9999999999999999999999999999999998888 999999999999999999999999999888
Q ss_pred CC-------hHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcC
Q psy17306 158 GR-------LDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQN 230 (904)
Q Consensus 158 ~~-------~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 230 (904)
+. ++++++.+ .+++..+
T Consensus 215 ~~~~~~~~~~~eELe~~--------------------------------------------------------~~aI~~~ 238 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYI--------------------------------------------------------LKSIHLI 238 (349)
T ss_dssp TTCCCCHHHHHHHHHHH--------------------------------------------------------HHHHHHC
T ss_pred cccccchHHHHHHHHHH--------------------------------------------------------HHHHHhC
Confidence 76 33333333 6899999
Q ss_pred chhHHHHHHHHHHHHHhCCH--------------------HHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCH
Q psy17306 231 PLLAEAYSNLGNVYKERGQL--------------------QEALENYRHAVRLK------PDFIDGYINLAAALVAAGDM 284 (904)
Q Consensus 231 ~~~~~~~~~lg~~~~~~g~~--------------------~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~ 284 (904)
|++..+|+.+..++...|+. ..-.......+... +..+.++..++.+|...|+.
T Consensus 239 P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~ 318 (349)
T 3q7a_A 239 PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRV 318 (349)
T ss_dssp TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCH
Confidence 99999999999998887764 22222222222222 46788999999999999999
Q ss_pred HHHHHHHHHHH-hhCCCc
Q psy17306 285 EQAVQAYVTAL-QYNPLL 301 (904)
Q Consensus 285 ~~A~~~~~~al-~~~p~~ 301 (904)
++|.+.++.+. +.+|-.
T Consensus 319 ~~a~~~~~~l~~~~dpir 336 (349)
T 3q7a_A 319 DDAAKVFEKLSSEYDQMR 336 (349)
T ss_dssp HHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHhhhChHH
Confidence 99999999987 556654
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.66 E-value=3.5e-16 Score=147.95 Aligned_cols=159 Identities=16% Similarity=0.132 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYK 87 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 87 (904)
...++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+| ++..+..++.+..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999999999999999999999 7777766665543
Q ss_pred -HhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh--hhHHHHHHHHHHHcCChHHHH
Q psy17306 88 -ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL--YCVRSDLGNLLKALGRLDEAK 164 (904)
Q Consensus 88 -~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~ 164 (904)
..+...+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..++..++.++...|+.++|+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 33344568999999999999999999999999999999999999999999999976 569999999999999999999
Q ss_pred HHH
Q psy17306 165 DLY 167 (904)
Q Consensus 165 ~~~ 167 (904)
..|
T Consensus 165 ~~y 167 (176)
T 2r5s_A 165 SKY 167 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 888
No 110
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.66 E-value=6.7e-14 Score=142.56 Aligned_cols=232 Identities=12% Similarity=0.077 Sum_probs=189.7
Q ss_pred HHhhHHHHHhhcCchhHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HH
Q psy17306 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ----------LQEALENYRHAVRLKPDFIDGYINLAAALVAAGD--ME 285 (904)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~ 285 (904)
+++.....++..+|++..+|+..+.++...+. +++++.++..++..+|.+..+|...+.++...|+ ++
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~ 127 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA 127 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHH
Confidence 34444469999999999999999999988776 7899999999999999999999999999999994 89
Q ss_pred HHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccc
Q psy17306 286 QAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDL 365 (904)
Q Consensus 286 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (904)
+++..+.++++.+|.++
T Consensus 128 ~EL~~~~k~l~~dprNy--------------------------------------------------------------- 144 (331)
T 3dss_A 128 RELELCARFLEADERNF--------------------------------------------------------------- 144 (331)
T ss_dssp HHHHHHHHHHHHCTTCH---------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCCH---------------------------------------------------------------
Confidence 99999999999999881
Q ss_pred cccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhh
Q psy17306 366 HSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMS 445 (904)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~ 445 (904)
T Consensus 145 -------------------------------------------------------------------------------- 144 (331)
T 3dss_A 145 -------------------------------------------------------------------------------- 144 (331)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhccccccc
Q psy17306 446 RWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRT 525 (904)
Q Consensus 446 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 525 (904)
T Consensus 145 -------------------------------------------------------------------------------- 144 (331)
T 3dss_A 145 -------------------------------------------------------------------------------- 144 (331)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcchHHHHHHHHHHHhhCchhHhhcCC-hhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHc------
Q psy17306 526 NPEHPNYVAAARATKYVYNVEPDLTREGGS-IPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKER------ 598 (904)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~------ 598 (904)
.+|...+.+....|. +++++.++.+ ++..+|.+..+|..++.++...
T Consensus 145 ---------------~AW~~R~~vl~~l~~~~~eel~~~~~-----------~I~~~p~N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 145 ---------------HCWDYRRFVAAQAAVAPAEELAFTDS-----------LITRNFSNYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp ---------------HHHHHHHHHHHHTTCCHHHHHHHHHH-----------HHHHCSCCHHHHHHHHHHHHHHSCCC--
T ss_pred ---------------HHHHHHHHHHHHhCcCHHHHHHHHHH-----------HHHHCCCCHHHHHHHHHHHHHhhhcccc
Confidence 012333444444555 5888999988 9999999999999999999887
Q ss_pred --------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc-C----------CHHHHHHHHHHHHhhChhhHHHhhhc
Q psy17306 599 --------GQLQEALENYRHAVRLKPDFIDGYINLAAALVAA-G----------DMEQAVQAYVTALQYNPSCYLKAIET 659 (904)
Q Consensus 599 --------g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g----------~~~~A~~~~~~al~~~~~~~~~~l~~ 659 (904)
+.++++++++.+++..+|++..+|+.+..++... | .++++++ .+.+.++.
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~-----------~~~elle~ 267 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE-----------SCKELQEL 267 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH-----------HHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH-----------HHHHHHhh
Confidence 5689999999999999999999998777766655 3 3555555 77777788
Q ss_pred CcchHHHHHHHHHHHH---hCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy17306 660 RPDFAVAWSNLGCVFN---AQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLK 709 (904)
Q Consensus 660 ~p~~~~a~~~lg~~~~---~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 709 (904)
.|++...+..++.+.. ..|..++...++.+.+++||....-|..++.-+.
T Consensus 268 ~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~ 320 (331)
T 3dss_A 268 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 320 (331)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 8888666555554433 3678899999999999999998888877766554
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.65 E-value=1.1e-15 Score=174.56 Aligned_cols=161 Identities=15% Similarity=0.065 Sum_probs=134.9
Q ss_pred cCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q psy17306 553 GGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 632 (904)
Q Consensus 553 ~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 632 (904)
.|++++|+..|++ +++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++..+
T Consensus 2 ~g~~~~A~~~~~~-----------al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 70 (568)
T 2vsy_A 2 TADGPRELLQLRA-----------AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQ 70 (568)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHH-----------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 4788899999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHh-
Q psy17306 633 GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEA- 711 (904)
Q Consensus 633 g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~- 711 (904)
|++++|+. .+.++++.+|+++.+++++|.++...|++++|+..|+++++++|+++.++.++|.++..+
T Consensus 71 g~~~~A~~-----------~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 71 QRHAEAAV-----------LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139 (568)
T ss_dssp TCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHH-----------HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence 99999999 666777788999999999999999999999999999999999999999999999999999
Q ss_pred --cchhHHHHHHHHhhcccCChhhHH
Q psy17306 712 --RIFDRANTLFYVSSYFMITDEDID 735 (904)
Q Consensus 712 --g~~~~A~~~~~~a~~~~~~~~~~~ 735 (904)
|++++|.+.|++++...++.....
T Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~~~ 165 (568)
T 2vsy_A 140 DWRALDVLSAQVRAAVAQGVGAVEPF 165 (568)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCCSCHH
T ss_pred ccccHHHHHHHHHHHHhcCCcccChH
Confidence 999999999999999888754433
No 112
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.65 E-value=4.3e-16 Score=141.84 Aligned_cols=123 Identities=15% Similarity=0.000 Sum_probs=112.4
Q ss_pred HHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHH
Q psy17306 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYL 654 (904)
Q Consensus 575 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 654 (904)
.+++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.+|+++|.++...|++++|+. .|.
T Consensus 11 ~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-----------~~~ 79 (148)
T 2vgx_A 11 AMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIH-----------SYS 79 (148)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHH
T ss_pred HHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHH-----------HHH
Confidence 338999999999999999999999999999999999999999999999999999999999999999 777
Q ss_pred HhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy17306 655 KAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708 (904)
Q Consensus 655 ~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 708 (904)
+++..+|+++.+++++|.++..+|++++|+..|+++++++|+++........+.
T Consensus 80 ~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 133 (148)
T 2vgx_A 80 YGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVS 133 (148)
T ss_dssp HHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHH
Confidence 777889999999999999999999999999999999999988776544444333
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.65 E-value=3.9e-15 Score=152.94 Aligned_cols=170 Identities=18% Similarity=0.053 Sum_probs=153.0
Q ss_pred cCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHH
Q psy17306 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDL 150 (904)
Q Consensus 71 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 150 (904)
..|.+...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+........
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 34888889999999999999999999999999999999999999999999999999999999999999999777677777
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcC
Q psy17306 151 GNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQN 230 (904)
Q Consensus 151 a~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 230 (904)
+..+...++.++|+..+ ++++..+
T Consensus 192 ~~~l~~~~~~~~a~~~l--------------------------------------------------------~~al~~~ 215 (287)
T 3qou_A 192 QIELLXQAADTPEIQQL--------------------------------------------------------QQQVAEN 215 (287)
T ss_dssp HHHHHHHHTSCHHHHHH--------------------------------------------------------HHHHHHC
T ss_pred HHHHHhhcccCccHHHH--------------------------------------------------------HHHHhcC
Confidence 77777778877777777 6888999
Q ss_pred chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 231 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF--IDGYINLAAALVAAGDMEQAVQAYVTALQ 296 (904)
Q Consensus 231 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 296 (904)
|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++...|+.++|+..|++++.
T Consensus 216 P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 216 PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999988 88999999999999999999999999875
No 114
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.64 E-value=9.2e-16 Score=139.06 Aligned_cols=135 Identities=15% Similarity=0.108 Sum_probs=93.4
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHH
Q psy17306 606 ENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685 (904)
Q Consensus 606 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 685 (904)
..|++++.++|++..+++.+|.++...|++++|+. .|.+++..+|+++.+|+.+|.++...|++++|+.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~-----------~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 73 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQK-----------IFQALCMLDHYDARYFLGLGACRQSLGLYEQALQ 73 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHH-----------HHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHH
Confidence 45666677777777777777777777777777777 5555556667777777777777777777777777
Q ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHH
Q psy17306 686 HFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKK 751 (904)
Q Consensus 686 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~ 751 (904)
.|++++.++|+++.+++++|.++..+|++++|+.+|++++...|++.........+...++.+++.
T Consensus 74 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~~ 139 (142)
T 2xcb_A 74 SYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTAR 139 (142)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhc
Confidence 777777777777777777777777777777777777777777766666666666666655555443
No 115
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.64 E-value=2.3e-15 Score=148.52 Aligned_cols=208 Identities=11% Similarity=-0.007 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH-------HHHHHhhcCHHHHHHHHHHHHhcCcccH----
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLL-------SSIHFQCRKLDKSAHFSTLAIKQNPLLA---- 76 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~---- 76 (904)
...+|..|.-+ ..+++..|...|.+++..+|..+++|..+ +.++...++..+++..+++.+.+.|...
T Consensus 7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~ 85 (282)
T 4f3v_A 7 LASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARI 85 (282)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEE
T ss_pred HHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhh
Confidence 44566666665 57777777777777777777777777777 6777777777777777777777666532
Q ss_pred -----------------HHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy17306 77 -----------------EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 139 (904)
Q Consensus 77 -----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 139 (904)
.+...++.++...|+|++|.+.|..++...|.+. +.+.+|.++...++|++|+..|+.+...
T Consensus 86 ~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~ 164 (282)
T 4f3v_A 86 AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW 164 (282)
T ss_dssp ECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC
T ss_pred ccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc
Confidence 2334466667777777777777777766667666 6777777777777777777777666553
Q ss_pred CCCh--hhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchH
Q psy17306 140 NPDL--YCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTL 217 (904)
Q Consensus 140 ~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (904)
.+.. ..+++.+|.++..+|++++|+..|
T Consensus 165 ~d~~~~~~a~~~LG~al~~LG~~~eAl~~l-------------------------------------------------- 194 (282)
T 4f3v_A 165 PDKFLAGAAGVAHGVAAANLALFTEAERRL-------------------------------------------------- 194 (282)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHH--------------------------------------------------
T ss_pred CCcccHHHHHHHHHHHHHHCCCHHHHHHHH--------------------------------------------------
Confidence 2111 235666666666666666666655
Q ss_pred HHhhHHHHHhhcC--ch-hHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy17306 218 ESAHFSTLAIKQN--PL-LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 274 (904)
Q Consensus 218 ~a~~~~~~~~~~~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 274 (904)
++++... |. .+.+++.+|.++..+|+.++|...|++++..+|+ ..+...|
T Consensus 195 ------~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 195 ------TEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp ------HHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred ------HHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 2333222 33 4556666666666666666666666666666666 5544433
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.62 E-value=6.5e-15 Score=168.12 Aligned_cols=146 Identities=21% Similarity=0.155 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHH
Q psy17306 22 GDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRH 101 (904)
Q Consensus 22 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 101 (904)
|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+.+|++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHc---CChHHHHHHH
Q psy17306 102 AVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL---GRLDEAKDLY 167 (904)
Q Consensus 102 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~ 167 (904)
+++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..++.++... |++++|...+
T Consensus 83 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 66666666666666666666666666666666666666665555555555555555 4444444444
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.62 E-value=3.9e-14 Score=144.72 Aligned_cols=160 Identities=14% Similarity=0.021 Sum_probs=130.2
Q ss_pred hhCchhHhhc-C-ChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHh
Q psy17306 544 NVEPDLTREG-G-SIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ--------EALENYRHAVR 613 (904)
Q Consensus 544 ~~l~~~~~~~-~-~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--------~A~~~~~~al~ 613 (904)
+..+.+.... + ++++++.++.+ +++.+|.+..+|..++.+....|.++ ++++.++++++
T Consensus 127 ~hR~wlL~~l~~~~~~~EL~~~~k-----------~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~ 195 (349)
T 3q7a_A 127 HHRLLLLDRISPQDPVSEIEYIHG-----------SLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR 195 (349)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHH-----------HTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH-----------HHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH
Confidence 3334444443 4 67889999999 99999999999999999999998888 99999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCH------
Q psy17306 614 LKPDFIDGYINLAAALVAAGD-------MEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEI------ 680 (904)
Q Consensus 614 ~~p~~~~a~~~lg~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~------ 680 (904)
.+|.+..+|..++.++...++ ++++++ .+.+++..+|++..+|+.+..++...|+.
T Consensus 196 ~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe-----------~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~ 264 (349)
T 3q7a_A 196 VDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELI-----------YILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILP 264 (349)
T ss_dssp HCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHH
T ss_pred hCCCCHHHHHHHHHHHHhccccccchHHHHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccc
Confidence 999999999999999999987 567777 78888899999999999999999988764
Q ss_pred --------------HHHHHHHHHHHhcC------cCcHHHHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 681 --------------WLAIHHFEKAVSLD------PNFLDAYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 681 --------------~~A~~~~~~al~~~------p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
..-.+.....+... +.++.++.-|+.+|...|+.++|.++|....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 265 AILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 22233333332222 5789999999999999999999999998875
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.62 E-value=3.6e-15 Score=155.19 Aligned_cols=206 Identities=16% Similarity=0.138 Sum_probs=160.8
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHH
Q psy17306 20 QAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQ-CRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALEN 98 (904)
Q Consensus 20 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 98 (904)
..|++.+|..+++++.+..+.. ++. .+++++|..+|.++ |.+|...|++++|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 4688999999999998876642 122 58899999998876 5688899999999999
Q ss_pred HHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh------hhHHHHHHHHHHHcCChHHHHHH
Q psy17306 99 YRHAVRLKPDF------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL------YCVRSDLGNLLKALGRLDEAKDL 166 (904)
Q Consensus 99 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~ 166 (904)
|.+++.+.+.. ..++..+|.+|..+|++++|+.+|++++++.+.. ..++..+|.+|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 99999885432 4578999999999999999999999999874321 3456667777766 777777666
Q ss_pred HHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHH
Q psy17306 167 YCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE 246 (904)
Q Consensus 167 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~ 246 (904)
| .+|+.++.. ....+....++..+|.++..
T Consensus 138 ~----------------~~Al~~~~~----------------------------------~~~~~~~~~~~~~lg~~~~~ 167 (307)
T 2ifu_A 138 Y----------------QQAAAVFEN----------------------------------EERLRQAAELIGKASRLLVR 167 (307)
T ss_dssp H----------------HHHHHHHHH----------------------------------TTCHHHHHHHHHHHHHHHHH
T ss_pred H----------------HHHHHHHHh----------------------------------CCChhHHHHHHHHHHHHHHH
Confidence 6 333333321 00111236788999999999
Q ss_pred hCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 247 RGQLQEALENYRHAVRLKPDF------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 247 ~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
.|++++|+.+|++++.+.|.+ ..++..+|.++..+|++++|+..|++++ ..|..
T Consensus 168 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 168 QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 999999999999999986543 3478889999999999999999999999 99876
No 119
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.62 E-value=3.8e-15 Score=146.94 Aligned_cols=199 Identities=15% Similarity=0.005 Sum_probs=172.3
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHH-------HHHHHHhCcHHHHHHHHHHHHhcCCCCHH-----
Q psy17306 44 VLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNL-------GNVYKERGQLQEALENYRHAVRLKPDFID----- 111 (904)
Q Consensus 44 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~----- 111 (904)
.++..|.-+ ..+++..|...|.+++..+|..+.+|..+ +.++...++..+++..+++.+.+.|....
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 344455555 58999999999999999999999999999 89999999999999999999998775433
Q ss_pred ----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHH
Q psy17306 112 ----------------GYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGN 175 (904)
Q Consensus 112 ----------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~ 175 (904)
+...++.++...|++++|.+.|..++...|++. ..+.+|.++...++|++|+..|
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l-------- 158 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQV-------- 158 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHH--------
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHH--------
Confidence 445588999999999999999999999999888 9999999999999999998888
Q ss_pred HHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhc-Cch-hHHHHHHHHHHHHHhCCHHHH
Q psy17306 176 LLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ-NPL-LAEAYSNLGNVYKERGQLQEA 253 (904)
Q Consensus 176 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~lg~~~~~~g~~~~A 253 (904)
..+... +|. ...+++.+|.++..+|++++|
T Consensus 159 ------------------------------------------------~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eA 190 (282)
T 4f3v_A 159 ------------------------------------------------KSAGKWPDKFLAGAAGVAHGVAAANLALFTEA 190 (282)
T ss_dssp ------------------------------------------------TTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ------------------------------------------------HHhhccCCcccHHHHHHHHHHHHHHCCCHHHH
Confidence 233332 222 245899999999999999999
Q ss_pred HHHHHHHHhhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17306 254 LENYRHAVRLK--PD-FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPL 300 (904)
Q Consensus 254 ~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 300 (904)
+.+|++++... |. .+++++.+|.++..+|+.++|...|++++..+|+
T Consensus 191 l~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 191 ERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 99999998654 55 5679999999999999999999999999999998
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.61 E-value=2.6e-15 Score=153.65 Aligned_cols=200 Identities=17% Similarity=0.093 Sum_probs=158.7
Q ss_pred CCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy17306 39 TNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 118 (904)
Q Consensus 39 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 118 (904)
|.++..+..+|..++..|++++|+..|++++..+|+++.++..+|.++..+|++++|+..|+++++++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcc
Q psy17306 119 ALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVT 198 (904)
Q Consensus 119 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 198 (904)
++..+|++++|+..|+++++++|++...+........... ++....
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~---~~~~~~------------------------------- 126 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA---KKKRWN------------------------------- 126 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH---HHHHHH-------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH---HHHHHH-------------------------------
Confidence 9999999999999999999998876433322222221111 111110
Q ss_pred hhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy17306 199 MKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 278 (904)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 278 (904)
.......+.+..+...++.+. .|++++|+..++++++.+|++......++.++
T Consensus 127 -------------------------~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 179 (281)
T 2c2l_A 127 -------------------------SIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIE 179 (281)
T ss_dssp -------------------------HHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHH
T ss_pred -------------------------HHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHH
Confidence 112233455556666666654 79999999999999999999988888888887
Q ss_pred HHc-CCHHHHHHHHHHHHhhCC
Q psy17306 279 VAA-GDMEQAVQAYVTALQYNP 299 (904)
Q Consensus 279 ~~~-g~~~~A~~~~~~al~~~p 299 (904)
... +.+++|...|.++.+..+
T Consensus 180 ~~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 180 AKHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp HHHHHHHHHHHHHHHHSSCTTS
T ss_pred HHHHHHHHHHHHHHHhhhcccc
Confidence 776 778999999999876543
No 121
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.61 E-value=3.1e-15 Score=135.58 Aligned_cols=126 Identities=15% Similarity=-0.029 Sum_probs=115.2
Q ss_pred HHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHh
Q psy17306 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKA 656 (904)
Q Consensus 577 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 656 (904)
++..+|++..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+. .+.++
T Consensus 10 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-----------~~~~a 78 (142)
T 2xcb_A 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQ-----------SYSYG 78 (142)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHH-----------HHHHH
Confidence 7888999999999999999999999999999999999999999999999999999999999999 77777
Q ss_pred hhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcc
Q psy17306 657 IETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARI 713 (904)
Q Consensus 657 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 713 (904)
+..+|+++.+++++|.++..+|++++|+..|+++++++|+++........+....+.
T Consensus 79 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~ 135 (142)
T 2xcb_A 79 ALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135 (142)
T ss_dssp HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999887766655555544443
No 122
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.6e-14 Score=127.85 Aligned_cols=118 Identities=23% Similarity=0.231 Sum_probs=102.3
Q ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCc
Q psy17306 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP 661 (904)
Q Consensus 582 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p 661 (904)
|..+..+..+|..+...|++++|+..|+++++++|+++.++.++|.++..+|++++|+. .+.++++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~-----------~~~~al~~~p 69 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA-----------DCNKAIEKDP 69 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCT
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHH-----------HHHHHHHhCC
Confidence 45677888999999999999999999999999999999999999999999999999999 6666777788
Q ss_pred chHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC------cCcHHHHHHHHHHHHH
Q psy17306 662 DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD------PNFLDAYINLGNVLKE 710 (904)
Q Consensus 662 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~la~~~~~ 710 (904)
+++.+++.+|.++..+|++++|+..|+++++++ |.+..++..++.+...
T Consensus 70 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 70 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 888899999999999999999999999999998 8888888888877654
No 123
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.60 E-value=5.3e-15 Score=131.23 Aligned_cols=121 Identities=18% Similarity=0.124 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------cHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhhChh
Q psy17306 584 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD-------FID-----GYINLAAALVAAGDMEQAVQAYVTALQYNPS 651 (904)
Q Consensus 584 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 651 (904)
.+..+.++|..+...|++++|+..|+++++++|+ +.. +|.++|.++..+|++++|+..|+++|+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~---- 85 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH---- 85 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----
Confidence 3678899999999999999999999999999999 444 999999999999999999998888887
Q ss_pred hHHHhhhcCcchHHHH----HHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy17306 652 CYLKAIETRPDFAVAW----SNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708 (904)
Q Consensus 652 ~~~~~l~~~p~~~~a~----~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 708 (904)
.|.+.++++|+++.+| +++|.++..+|++++|+.+|+++++++|++..+.-.+..+-
T Consensus 86 l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 86 YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 5777777799998888 99999999999999999999999999888766655554443
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.59 E-value=1.2e-14 Score=148.75 Aligned_cols=177 Identities=17% Similarity=0.060 Sum_probs=137.6
Q ss_pred HHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q psy17306 542 VYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621 (904)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 621 (904)
.+..+|..+...|++++|+..|++ ++..+|+++.+++++|.++...|++++|+..|+++++++|+++.+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~-----------al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 74 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGR-----------AITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA 74 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH-----------HHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH
Confidence 458899999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHH
Q psy17306 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAY 701 (904)
Q Consensus 622 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 701 (904)
++++|.++..+|++++|+..|+++++.+|+ ++..+........ +..++...........|.++.+.
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-----------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~ 140 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSLAKE-----------QRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELH 140 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------TTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999977777665553 2111111111111 12233344444445677777777
Q ss_pred HHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHH
Q psy17306 702 INLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKT 745 (904)
Q Consensus 702 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 745 (904)
..++.++ .|++++|++.|+++++..|++..+...+.......
T Consensus 141 ~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 182 (281)
T 2c2l_A 141 SYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKH 182 (281)
T ss_dssp HHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHH
Confidence 7777765 68888899999888888887766655555544443
No 125
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.59 E-value=4.8e-14 Score=146.67 Aligned_cols=216 Identities=17% Similarity=0.150 Sum_probs=164.1
Q ss_pred hHHHHHHHHHHHHH------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc------
Q psy17306 7 LGIGLLELAHREYQ------AGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL------ 74 (904)
Q Consensus 7 ~~~~l~~~a~~~~~------~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------ 74 (904)
.+..++..|..... .|++++|+..|.++ |.+|...|++++|+..|.+++.+.+.
T Consensus 9 eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 74 (307)
T 2ifu_A 9 EAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFH 74 (307)
T ss_dssp HHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHccccccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45566777766443 57888888888876 67888999999999999999998653
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-----
Q psy17306 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD------FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL----- 143 (904)
Q Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----- 143 (904)
...++..+|.+|..+|++++|+.+|++++.+.+. ...++..+|.+|.. |++++|+.+|++++.+.|..
T Consensus 75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~ 153 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQ 153 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhH
Confidence 3668999999999999999999999999988432 24678999999999 99999999999999986643
Q ss_pred -hhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhH
Q psy17306 144 -YCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHF 222 (904)
Q Consensus 144 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 222 (904)
..++..+|.++...|++++|+..| ++|+.+....
T Consensus 154 ~~~~~~~lg~~~~~~g~~~~A~~~~----------------~~al~~~~~~----------------------------- 188 (307)
T 2ifu_A 154 AAELIGKASRLLVRQQKFDEAAASL----------------QKEKSMYKEM----------------------------- 188 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHH----------------HHHHHHHHHT-----------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHH----------------HHHHHHHHHc-----------------------------
Confidence 456777788888888887777777 3333333210
Q ss_pred HHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHcCCHHHHHH
Q psy17306 223 STLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID-----GYINLAAALVAAGDMEQAVQ 289 (904)
Q Consensus 223 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~ 289 (904)
...+....++..+|.++...|++++|+.+|++++ ++|.... .+..++..+ ..|+.+.+..
T Consensus 189 -----~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 189 -----ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred -----CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 0112234578889999999999999999999999 9886543 344555544 5666554433
No 126
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.58 E-value=4.2e-15 Score=143.70 Aligned_cols=160 Identities=17% Similarity=0.079 Sum_probs=125.9
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH----
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI---- 619 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---- 619 (904)
...+......|+++.|.+.+.. .....+..+..+..+|.++...|++++|+..|++++++.|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 76 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDY-----------TDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD 76 (198)
T ss_dssp --------------CCCSGGGC-----------CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC
T ss_pred cchhhhhhhhhhccccCchhhC-----------CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccch
Confidence 4455566667888888877776 5556667788999999999999999999999999999999887
Q ss_pred ------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHH
Q psy17306 620 ------------DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687 (904)
Q Consensus 620 ------------~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 687 (904)
.++.++|.++..+|++++|+. .+.+++..+|+++.+++.+|.++..+|++++|+..|
T Consensus 77 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~-----------~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 145 (198)
T 2fbn_A 77 QILLDKKKNIEISCNLNLATCYNKNKDYPKAID-----------HASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENL 145 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH-----------HHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 899999999999999999999 666667778889999999999999999999999999
Q ss_pred HHHHhcCcCcHHHHHHHHHHHHHhcchhHHH-HHHHHhh
Q psy17306 688 EKAVSLDPNFLDAYINLGNVLKEARIFDRAN-TLFYVSS 725 (904)
Q Consensus 688 ~~al~~~p~~~~a~~~la~~~~~~g~~~~A~-~~~~~a~ 725 (904)
+++++++|+++.++..++.++...|+..++. ..|.+..
T Consensus 146 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 146 YKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998887 4444443
No 127
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.58 E-value=5.5e-14 Score=126.07 Aligned_cols=134 Identities=27% Similarity=0.473 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE 88 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 88 (904)
.+++.+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy17306 89 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD 142 (904)
Q Consensus 89 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 142 (904)
.|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+|+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999999999999999998886
No 128
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.58 E-value=4.3e-14 Score=126.78 Aligned_cols=134 Identities=36% Similarity=0.564 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHH
Q psy17306 586 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAV 665 (904)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~ 665 (904)
.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+. .+.+++...|.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~-----------~~~~~~~~~~~~~~ 70 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE-----------YYQKALELDPRSAE 70 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-----------HHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHH-----------HHHHHHHHCCCchH
Confidence 4688999999999999999999999999999999999999999999999999999 55566667788889
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCC
Q psy17306 666 AWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 666 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 730 (904)
+++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|..+|++++...|+
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999887654
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.58 E-value=8e-16 Score=161.82 Aligned_cols=199 Identities=13% Similarity=0.088 Sum_probs=128.3
Q ss_pred CCHHHHHHHHHH----HHhhCCCCHHHHHHHHHHHH------------hhcCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q psy17306 22 GDYESAERHCMQ----LWRQETNNTGVLLLLSSIHF------------QCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNV 85 (904)
Q Consensus 22 g~~~~A~~~~~~----~l~~~p~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 85 (904)
+.+++|+..+.. ++...|.. ++...|.... ..+++++|+..+++++..+|..+.++..+|.+
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~ 156 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTV 156 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHH
Confidence 467778887777 77778875 4444444332 56778888888888888889899999999999
Q ss_pred HHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHH
Q psy17306 86 YKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKD 165 (904)
Q Consensus 86 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 165 (904)
+...|++++|+..|++++.++|.+... .. +......|....++.++|.++...|++++|+.
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~------------~~-------~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 217 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWLEYESSF------------SN-------EEAQKAQALRLASHLNLAMCHLKLQAFSAAIE 217 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCCCC------------CS-------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhhccccC------------Ch-------HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999887310 00 01111112223344444444444444444444
Q ss_pred HHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHH
Q psy17306 166 LYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYK 245 (904)
Q Consensus 166 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~ 245 (904)
.+ .+++..+|+++.+++.+|.++.
T Consensus 218 ~~--------------------------------------------------------~~al~~~p~~~~a~~~lg~~~~ 241 (336)
T 1p5q_A 218 SC--------------------------------------------------------NKALELDSNNEKGLSRRGEAHL 241 (336)
T ss_dssp HH--------------------------------------------------------HHHHHHCTTCHHHHHHHHHHHH
T ss_pred HH--------------------------------------------------------HHHHHhCCCcHHHHHHHHHHHH
Confidence 44 3444444444555566666666
Q ss_pred HhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhh
Q psy17306 246 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA-VQAYVTALQY 297 (904)
Q Consensus 246 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 297 (904)
..|++++|+..|+++++++|++..++..++.++...|++++| ...|++++..
T Consensus 242 ~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 242 AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666777777666666666 3455555543
No 130
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.58 E-value=1.1e-13 Score=134.87 Aligned_cols=184 Identities=16% Similarity=0.087 Sum_probs=145.2
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC----cHHHHHHHHHH
Q psy17306 26 SAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG----QLQEALENYRH 101 (904)
Q Consensus 26 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~ 101 (904)
+|+..|+++.+. .++.+++.+|.++...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 577788888764 67889999999999999999999999998875 568888999999888 6 89999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHH----cCChHHHHHHHHHHH
Q psy17306 102 AVRLKPDFIDGYINLAAALVA----AGDMEQAVQAYVTALQYNP--DLYCVRSDLGNLLKA----LGRLDEAKDLYCVRS 171 (904)
Q Consensus 102 al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~ 171 (904)
+.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..| +++.+++.||.+|.. .+++++|+.+|
T Consensus 79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~---- 152 (212)
T 3rjv_A 79 AVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF---- 152 (212)
T ss_dssp HHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH----
T ss_pred HHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH----
Confidence 864 5678889999999887 8889999999999998887 357888888888887 66777777766
Q ss_pred hhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHh-C--
Q psy17306 172 DLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKER-G-- 248 (904)
Q Consensus 172 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g-- 248 (904)
+++... +.++.+++.+|.+|... |
T Consensus 153 ----------------------------------------------------~~A~~~-~~~~~a~~~Lg~~y~~g~gg~ 179 (212)
T 3rjv_A 153 ----------------------------------------------------KGSSSL-SRTGYAEYWAGMMFQQGEKGF 179 (212)
T ss_dssp ----------------------------------------------------HHHHHT-SCTTHHHHHHHHHHHHCBTTT
T ss_pred ----------------------------------------------------HHHHHc-CCCHHHHHHHHHHHHcCCCCC
Confidence 455555 45566788888888754 2
Q ss_pred ---CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy17306 249 ---QLQEALENYRHAVRLKPDFIDGYINLA 275 (904)
Q Consensus 249 ---~~~~A~~~~~~al~~~p~~~~~~~~la 275 (904)
++++|+.+|+++.+.. +..+...++
T Consensus 180 ~~~d~~~A~~~~~~A~~~g--~~~A~~~l~ 207 (212)
T 3rjv_A 180 IEPNKQKALHWLNVSCLEG--FDTGCEEFD 207 (212)
T ss_dssp BCCCHHHHHHHHHHHHHHT--CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC--CHHHHHHHH
Confidence 7888888888888774 344444444
No 131
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.56 E-value=1.4e-13 Score=134.13 Aligned_cols=179 Identities=15% Similarity=0.011 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q psy17306 59 DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG----DMEQAVQAYV 134 (904)
Q Consensus 59 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~ 134 (904)
.+|+..|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 4688899999875 67999999999999999999999999999875 578999999999998 7 9999999999
Q ss_pred HHHhcCCChhhHHHHHHHHHHH----cCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhc
Q psy17306 135 TALQYNPDLYCVRSDLGNLLKA----LGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYG 210 (904)
Q Consensus 135 ~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 210 (904)
++.+ +.++.+++.+|.+|.. .+++++|+.+|
T Consensus 78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~------------------------------------------- 112 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLL------------------------------------------- 112 (212)
T ss_dssp HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHH-------------------------------------------
T ss_pred HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHH-------------------------------------------
Confidence 9965 5788999999999987 77787777777
Q ss_pred CCCcchHHHhhHHHHHhhcCc--hhHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-C-
Q psy17306 211 GRKPTTLESAHFSTLAIKQNP--LLAEAYSNLGNVYKE----RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA-G- 282 (904)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g- 282 (904)
+++....+ ..+.+++.+|.+|.. .+++++|+.+|+++++. |.++.+++.+|.+|... |
T Consensus 113 -------------~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg 178 (212)
T 3rjv_A 113 -------------QDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKG 178 (212)
T ss_dssp -------------HHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTT
T ss_pred -------------HHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCC
Confidence 57777777 568999999999999 88999999999999998 67788999999999865 3
Q ss_pred ----CHHHHHHHHHHHHhhCCCc
Q psy17306 283 ----DMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 283 ----~~~~A~~~~~~al~~~p~~ 301 (904)
++++|+.+|+++.+.....
T Consensus 179 ~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 179 FIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp TBCCCHHHHHHHHHHHHHHTCHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCHH
Confidence 8999999999999886544
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.56 E-value=8.6e-14 Score=130.09 Aligned_cols=132 Identities=20% Similarity=0.204 Sum_probs=121.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcch
Q psy17306 584 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDF 663 (904)
Q Consensus 584 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~ 663 (904)
.+..++.+|.++...|++++|+..|+++++.+|.++.++.++|.++...|++++|+. .+.+++..+|++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~-----------~~~~a~~~~~~~ 80 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG-----------DATRAIELDKKY 80 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCccc
Confidence 467899999999999999999999999999999999999999999999999999999 666667778889
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHH--HHHhcchhHHHHHHHHhhc
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNV--LKEARIFDRANTLFYVSSY 726 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--~~~~g~~~~A~~~~~~a~~ 726 (904)
+.+++.+|.++...|++++|+.+|+++++++|.++.++..++.+ +...|++++|+..+.++..
T Consensus 81 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 81 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999999999999999999988555554 8899999999999877644
No 133
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.55 E-value=5e-14 Score=124.31 Aligned_cols=117 Identities=24% Similarity=0.252 Sum_probs=99.0
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcc
Q psy17306 583 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD 662 (904)
Q Consensus 583 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~ 662 (904)
+.+.++.++|.++...|++++|+..|+++++++|+++.++.++|.+|..+|++++|+..|++++++.|+.. ...+.
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~ 81 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR----ADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----CCHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc----hhhHH
Confidence 45778999999999999999999999999999999999999999999999999999998877777655311 11223
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHH
Q psy17306 663 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704 (904)
Q Consensus 663 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 704 (904)
.+.++.++|.++..+|++++|+++|+++++.+|+ ++....+
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l 122 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKV 122 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence 3578999999999999999999999999999875 5544443
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=6.7e-14 Score=123.81 Aligned_cols=113 Identities=19% Similarity=0.185 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 121 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 121 (904)
+..+..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|+++.+++.+|.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHhcC------CChhhHHHHHHHHH
Q psy17306 122 AAGDMEQAVQAYVTALQYN------PDLYCVRSDLGNLL 154 (904)
Q Consensus 122 ~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~ 154 (904)
.+|++++|+..|+++++++ |++..++..++.+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 5555555555555555555 55555555544443
No 135
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.55 E-value=8.4e-15 Score=161.01 Aligned_cols=152 Identities=18% Similarity=0.157 Sum_probs=133.8
Q ss_pred hcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-------------
Q psy17306 552 EGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF------------- 618 (904)
Q Consensus 552 ~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------------- 618 (904)
..+++++|+..|+. ++..+|..+.++..+|.++...|++++|+..|+++++++|.+
T Consensus 246 ~l~~~~~A~~~~~~-----------~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~ 314 (457)
T 1kt0_A 246 TLKSFEKAKESWEM-----------DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASES 314 (457)
T ss_dssp EEEEEECCCCGGGS-----------CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHH
T ss_pred hhhhcccCcchhhc-----------CHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHH
Confidence 56677788888877 788889999999999999999999999999999999999998
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC
Q psy17306 619 --IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696 (904)
Q Consensus 619 --~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 696 (904)
..+++++|.++..+|++++|+. .+.++++++|+++.+|+++|.+|..+|++++|+..|+++++++|+
T Consensus 315 ~~~~~~~nla~~~~~~g~~~~A~~-----------~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 315 FLLAAFLNLAMCYLKLREYTKAVE-----------CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHH-----------HHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 6899999999999999999999 777777888999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcchhHHHH-HHHHhh
Q psy17306 697 FLDAYINLGNVLKEARIFDRANT-LFYVSS 725 (904)
Q Consensus 697 ~~~a~~~la~~~~~~g~~~~A~~-~~~~a~ 725 (904)
+..++.+++.++..+|++++|.. .|+++.
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998864 344443
No 136
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.55 E-value=5.1e-14 Score=131.27 Aligned_cols=116 Identities=23% Similarity=0.220 Sum_probs=80.1
Q ss_pred CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcC
Q psy17306 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETR 660 (904)
Q Consensus 581 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~ 660 (904)
++..+..++.+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+. .+.+++.++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-----------~~~~al~~~ 75 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAE-----------DAELATVVD 75 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHH-----------HHHHHHHhC
Confidence 445566777777777777777777777777777777777777777777777777777777 555555566
Q ss_pred cchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy17306 661 PDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNV 707 (904)
Q Consensus 661 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 707 (904)
|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++...+..
T Consensus 76 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 76 PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 66677777777777777777777777777777777766655554443
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.55 E-value=7.9e-14 Score=124.71 Aligned_cols=123 Identities=22% Similarity=0.283 Sum_probs=115.5
Q ss_pred hCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhc
Q psy17306 580 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIET 659 (904)
Q Consensus 580 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~ 659 (904)
..|..+.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+. .+.+++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~-----------~~~~a~~~ 79 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALK-----------DCEECIQL 79 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHH-----------HHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHH-----------HHHHHHHh
Confidence 3577889999999999999999999999999999999999999999999999999999999 66666677
Q ss_pred CcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcc
Q psy17306 660 RPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARI 713 (904)
Q Consensus 660 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 713 (904)
+|+++.+++.+|.++...|++++|+.+|+++++++|.+..++..++.++..+|+
T Consensus 80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888999999999999999999999999999999999999999999999998874
No 138
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.55 E-value=2.4e-13 Score=133.12 Aligned_cols=136 Identities=13% Similarity=0.129 Sum_probs=127.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
.+..++.+|..++..|++++|+..|++++ +| ++.+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 45678999999999999999999999996 34 7899999999999999999999999999999999999999999999
Q ss_pred HHhCcHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhh
Q psy17306 87 KERGQLQEALENYRHAVRLKPDFI----------------DGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYC 145 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 145 (904)
...|++++|+..|++++...|.+. .++..+|.++...|++++|+..|+++++++|++..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 999999999999999999888766 89999999999999999999999999999998743
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.55 E-value=8.3e-14 Score=124.08 Aligned_cols=126 Identities=25% Similarity=0.262 Sum_probs=117.6
Q ss_pred HhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhh
Q psy17306 579 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIE 658 (904)
Q Consensus 579 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~ 658 (904)
..+|..+.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+. .+.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~-----------~~~~~~~ 74 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ-----------DCERAIC 74 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHH-----------HHHHHHh
Confidence 45677889999999999999999999999999999999999999999999999999999999 6666667
Q ss_pred cCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchh
Q psy17306 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFD 715 (904)
Q Consensus 659 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 715 (904)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 75 IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred cCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 788889999999999999999999999999999999999999999999999998763
No 140
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.55 E-value=2.3e-14 Score=127.13 Aligned_cols=134 Identities=13% Similarity=-0.000 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHH-HhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----
Q psy17306 619 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYL-KAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL---- 693 (904)
Q Consensus 619 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---- 693 (904)
...+.++|..++..|+|++|+..|+++++++|+... .++...|.++.+|.++|.++..+|++++|+.+|++||++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 567899999999999999999977777776665110 111223345669999999999999999999999999999
Q ss_pred ---CcCcHHHH----HHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHH
Q psy17306 694 ---DPNFLDAY----INLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKF 752 (904)
Q Consensus 694 ---~p~~~~a~----~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 752 (904)
+|+++.+| +++|.++..+|++++|+..|++++++.|++..+..-+..+..+..+-.+++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~k~ 156 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQL 156 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999 999999999999999999999999999988777777777766665555544
No 141
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.54 E-value=1e-13 Score=135.75 Aligned_cols=142 Identities=13% Similarity=0.090 Sum_probs=122.7
Q ss_pred HHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q psy17306 542 VYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621 (904)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 621 (904)
.++.+|..+...|++++|+..|++ ++ +| ++.+++++|.++...|++++|+..|+++++++|+++.+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~-----------a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 73 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSA-----------VQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA 73 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHT-----------SS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHH-----------Hc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence 457889999999999999999999 64 33 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhChh-----hHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC
Q psy17306 622 YINLAAALVAAGDMEQAVQAYVTALQYNPS-----CYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696 (904)
Q Consensus 622 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 696 (904)
++++|.++...|++++|+..|+++++..|+ .....+...|..+.+++++|.++...|++++|+..|+++++++|+
T Consensus 74 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 74 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 999999999999999999988877776553 112222355667788999999999999999999999999999887
Q ss_pred c
Q psy17306 697 F 697 (904)
Q Consensus 697 ~ 697 (904)
+
T Consensus 154 ~ 154 (213)
T 1hh8_A 154 P 154 (213)
T ss_dssp G
T ss_pred c
Confidence 6
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.54 E-value=5.4e-14 Score=133.10 Aligned_cols=136 Identities=15% Similarity=0.182 Sum_probs=112.4
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHH-H
Q psy17306 596 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCV-F 674 (904)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~-~ 674 (904)
...|++++|+..|+++++.+|+++.++..+|.++...|++++|+. .+.+++..+|+++.++..+|.+ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~-----------~~~~al~~~p~~~~~~~~la~~l~ 89 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLL-----------AYRQALQLRGENAELYAALATVLY 89 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHcCCCCHHHHHHHHHHHH
Confidence 456788889999999999999999999999999999999999999 6666667778888899999999 7
Q ss_pred HhCCCH--HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHH
Q psy17306 675 NAQGEI--WLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCE 742 (904)
Q Consensus 675 ~~~g~~--~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 742 (904)
...|++ ++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++...|++......+..+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~ 159 (177)
T 2e2e_A 90 YQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESIN 159 (177)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 788998 99999999999999999999999999999999999999999999998887766555544443
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.53 E-value=5.2e-14 Score=133.21 Aligned_cols=134 Identities=20% Similarity=0.177 Sum_probs=119.3
Q ss_pred CchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy17306 546 EPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625 (904)
Q Consensus 546 l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 625 (904)
.+..+...|++++|+..+++ ++..+|.++.+|+.+|.++...|++++|+..|+++++++|+++.++..+
T Consensus 16 ~~~~~~~~~~~~~A~~~~~~-----------al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 84 (177)
T 2e2e_A 16 PLHQFASQQNPEAQLQALQD-----------KIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAAL 84 (177)
T ss_dssp TTCCCC-----CCCCHHHHH-----------HHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHH
T ss_pred hhhhhhhccCHHHHHHHHHH-----------HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34446678999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHH-HHHcCCH--HHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHH
Q psy17306 626 AAA-LVAAGDM--EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAY 701 (904)
Q Consensus 626 g~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 701 (904)
|.+ +...|++ ++|+. .+.+++..+|+++.+++.+|.++...|++++|+..|+++++++|+++...
T Consensus 85 a~~l~~~~~~~~~~~A~~-----------~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRA-----------MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHTTTCCCHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHhcCCcchHHHHH-----------HHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 999 8899999 99999 66677778899999999999999999999999999999999999886544
No 144
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.53 E-value=1.5e-13 Score=142.04 Aligned_cols=170 Identities=8% Similarity=0.021 Sum_probs=140.6
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAE------AYSNLGNVYKERGQLQEALENYRHAVRLKPD 617 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 617 (904)
...+..+...|++++|+..+++ ++...+..+. .+..+|.++...|++++|+..|++++++.+.
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~-----------~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~ 147 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWN-----------ELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhhHHHHHHHHHH-----------HhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc
Confidence 4456678889999999999999 7766554433 3446899999999999999999999996443
Q ss_pred c------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy17306 618 F------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691 (904)
Q Consensus 618 ~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 691 (904)
. ..++.++|.+|..+|++++|+.+|+++++ .+.+.-...+..+.+++++|.+|..+|++++|+.++++++
T Consensus 148 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~----~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK----QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 34799999999999999999999999886 3332213445667799999999999999999999999999
Q ss_pred hcCcCc------HHHHHHHHHHHHHhcc-hhHHHHHHHHhhccc
Q psy17306 692 SLDPNF------LDAYINLGNVLKEARI-FDRANTLFYVSSYFM 728 (904)
Q Consensus 692 ~~~p~~------~~a~~~la~~~~~~g~-~~~A~~~~~~a~~~~ 728 (904)
++.+.. +.+++++|.++..+|+ +++|+++|++++...
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 985443 8899999999999995 699999999998743
No 145
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.51 E-value=4.1e-13 Score=138.70 Aligned_cols=170 Identities=7% Similarity=0.052 Sum_probs=140.0
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLL------AEAYSNLGNVYKERGQLQEALENYRHAVRLKP 616 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 616 (904)
+...+..+...|++++|+..+.+ ++...+.. ...++.+|.++...|++++|+..|+++++..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~-----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 146 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWN-----------ELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH-----------HhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 35677788899999999999999 66665543 24567899999999999999999999998754
Q ss_pred Cc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcc-hHHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy17306 617 DF------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD-FAVAWSNLGCVFNAQGEIWLAIHHFEK 689 (904)
Q Consensus 617 ~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~ 689 (904)
.. ..+++++|.+|..+|++++|+.+|++++++ +.. ...++. .+.+++++|.+|..+|++++|+.+|++
T Consensus 147 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~----~~~-~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~k 221 (293)
T 2qfc_A 147 TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ----LEA-LHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp CSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHH-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHh-cCccccchHHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 43 568999999999999999999988888852 211 111111 237899999999999999999999999
Q ss_pred HHhcCcC------cHHHHHHHHHHHHHhcchhHH-HHHHHHhhccc
Q psy17306 690 AVSLDPN------FLDAYINLGNVLKEARIFDRA-NTLFYVSSYFM 728 (904)
Q Consensus 690 al~~~p~------~~~a~~~la~~~~~~g~~~~A-~~~~~~a~~~~ 728 (904)
++++.+. .+.+++++|.+|..+|++++| ..+|++++...
T Consensus 222 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 222 AIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 9998543 378999999999999999999 88899998654
No 146
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.51 E-value=4.1e-13 Score=125.42 Aligned_cols=135 Identities=19% Similarity=0.154 Sum_probs=114.6
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGN 84 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 84 (904)
...+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.+++.+|.
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 35677888889999999999999999999998888888888899999999999999999999999888888888889999
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhc
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAA--ALVAAGDMEQAVQAYVTALQY 139 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~ 139 (904)
++...|++++|+.+|++++..+|.+..++..++. .+...|++++|+..+.++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999999999888888877744444 477888888888888877654
No 147
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=2.6e-14 Score=160.01 Aligned_cols=188 Identities=12% Similarity=0.070 Sum_probs=168.6
Q ss_pred hHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCC----------hhHHHHHHHHHhhhhhhHHHHHHH
Q psy17306 510 NKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGS----------IPITLTFECRKLDKSAHFSTLAIK 579 (904)
Q Consensus 510 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~l~~a~~~~~~al~ 579 (904)
+-..++++.+.+++..+|++..+| +..+.+....|+ +++++..+.+ ++.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW----------~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~-----------~l~ 101 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLW----------NCRREVLQHLETEKSPEESAALVKAELGFLES-----------CLR 101 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHH----------HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH-----------HHH
T ss_pred CCCHHHHHHHHHHHHHCchhHHHH----------HHHHHHHHhcccccchhhhhhhHHHHHHHHHH-----------HHH
Confidence 334577888899999999999888 888888888777 7888888888 999
Q ss_pred hCCchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhChhhHHHh
Q psy17306 580 QNPLLAEAYSNLGNVYKERG--QLQEALENYRHAVRLKPDFIDGYINLAAALVAAG-DMEQAVQAYVTALQYNPSCYLKA 656 (904)
Q Consensus 580 ~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~ 656 (904)
.+|.+..+|+.++.++...+ ++++|++.++++++.+|.+..+|...+.+....| .++++++ .+.++
T Consensus 102 ~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~-----------~~~~~ 170 (567)
T 1dce_A 102 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA-----------FTDSL 170 (567)
T ss_dssp HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH-----------HHHTT
T ss_pred hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHH-----------HHHHH
Confidence 99999999999999999999 7799999999999999999999999999999999 8999999 88888
Q ss_pred hhcCcchHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhH------
Q psy17306 657 IETRPDFAVAWSNLGCVFNAQ--------------GEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDR------ 716 (904)
Q Consensus 657 l~~~p~~~~a~~~lg~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~------ 716 (904)
++.+|.+..+|+.+|.++..+ +.+++|++++.+|+.++|++..+|+.++.++...|++++
T Consensus 171 I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~ 250 (567)
T 1dce_A 171 ITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHV 250 (567)
T ss_dssp TTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEE
T ss_pred HHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeee
Confidence 899999999999999999885 568999999999999999999999999999999998777
Q ss_pred ------HHHHHHHhhcccC
Q psy17306 717 ------ANTLFYVSSYFMI 729 (904)
Q Consensus 717 ------A~~~~~~a~~~~~ 729 (904)
|+.+|.+++...+
T Consensus 251 ~~~~~~~~~~f~~~i~~~~ 269 (567)
T 1dce_A 251 SREEACLSVCFSRPLTVGS 269 (567)
T ss_dssp ETTTTEEEEEEEEEECTTB
T ss_pred ccCCceEEEEeccceeccc
Confidence 5556666665543
No 148
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.51 E-value=2.4e-13 Score=122.37 Aligned_cols=124 Identities=22% Similarity=0.064 Sum_probs=91.8
Q ss_pred hCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhc
Q psy17306 580 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIET 659 (904)
Q Consensus 580 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~ 659 (904)
.+|.++..++.+|.++...|++++|+..|++++..+|+++.++.++|.++..+|++++|+. .+.+++..
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~-----------~~~~al~~ 72 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALA-----------DCRRALEL 72 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHH-----------HHHHHHHh
Confidence 3566677788888888888888888888888888888888888888888888888888887 55556666
Q ss_pred CcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC-----cHHHHHHHHHHHHHhcch
Q psy17306 660 RPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN-----FLDAYINLGNVLKEARIF 714 (904)
Q Consensus 660 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~~g~~ 714 (904)
+|+++.+++.+|.++...|++++|+..|+++++++|+ +..+...+..+.......
T Consensus 73 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 132 (137)
T 3q49_B 73 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 132 (137)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888888888888888888888888887776 566666666665544433
No 149
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.50 E-value=1.8e-13 Score=127.22 Aligned_cols=124 Identities=16% Similarity=0.090 Sum_probs=94.7
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17306 583 LLAEAYSNLGNVYKERGQLQEALENYRHAVRL------------------KPDFIDGYINLAAALVAAGDMEQAVQAYVT 644 (904)
Q Consensus 583 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 644 (904)
..+..+..+|..+...|++++|+..|++++.+ +|.+..++.++|.++..+|++++|+.
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~---- 84 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEE---- 84 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHH----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH----
Confidence 34678999999999999999999999999998 55566777777777777777777777
Q ss_pred HHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcH-HHHHHHHHHHHHhcchhHH
Q psy17306 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL-DAYINLGNVLKEARIFDRA 717 (904)
Q Consensus 645 al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~~A 717 (904)
.+.+++.++|+++.+|+.+|.++..+|++++|+..|+++++++|+++ .+...++.+....++..++
T Consensus 85 -------~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 85 -------TSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKAD 151 (162)
T ss_dssp -------HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred -------HHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666777777777777777777777777777777777777776 5566677666666555443
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.50 E-value=2.8e-13 Score=126.23 Aligned_cols=124 Identities=21% Similarity=0.198 Sum_probs=110.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q psy17306 615 KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD 694 (904)
Q Consensus 615 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 694 (904)
++.++..++.+|.++...|++++|+. .|.+++..+|+++.+|+++|.+|...|++++|+.+|+++++++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~-----------~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 75 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAID-----------LYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD 75 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 45678899999999999999999999 6777777889999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhh--HHHHHHHHHHHHHHHH
Q psy17306 695 PNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDED--IDVILERCEAKTEELN 749 (904)
Q Consensus 695 p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~l~~~~~~~~~~~ 749 (904)
|+++.+++++|.++..+|++++|+.+|++++...|++.. +...+..+..++++..
T Consensus 76 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~ 132 (164)
T 3sz7_A 76 PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEAN 132 (164)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998877 5555555565555443
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.49 E-value=6e-13 Score=117.31 Aligned_cols=106 Identities=19% Similarity=0.295 Sum_probs=75.4
Q ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc-------
Q psy17306 3 DIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL------- 75 (904)
Q Consensus 3 ~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------- 75 (904)
..++.+.++..+|..++..|+|++|+..|+++++.+|+++.++..+|.+|...|++++|+..++++++++|++
T Consensus 3 ~~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 82 (127)
T 4gcn_A 3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence 3456677777777777777777777777777777777777777777777777777777777777777776654
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCC
Q psy17306 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 108 (904)
Q Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 108 (904)
+.++..+|.++..+|++++|+.+|++++...|+
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 245666666666666666666666666666554
No 152
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.49 E-value=8.1e-13 Score=116.40 Aligned_cols=121 Identities=40% Similarity=0.642 Sum_probs=110.2
Q ss_pred CCch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhc
Q psy17306 581 NPLL-AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIET 659 (904)
Q Consensus 581 ~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~ 659 (904)
+|.. +.+++.+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+. .+.+++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~-----------~~~~~~~~ 72 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE-----------YYQKALEL 72 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHH-----------HHHHHHHh
Confidence 4544 78999999999999999999999999999999999999999999999999999999 56666667
Q ss_pred CcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhc
Q psy17306 660 RPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEAR 712 (904)
Q Consensus 660 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 712 (904)
+|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|
T Consensus 73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 78888999999999999999999999999999999999999999999988765
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.49 E-value=4.3e-13 Score=119.87 Aligned_cols=120 Identities=28% Similarity=0.308 Sum_probs=76.4
Q ss_pred CCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy17306 39 TNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 118 (904)
Q Consensus 39 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 118 (904)
|.++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.+|++++..+|.++.++..+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 34455666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcC
Q psy17306 119 ALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALG 158 (904)
Q Consensus 119 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 158 (904)
++...|++++|+..++++++.+|.+..++..++.++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666665544
No 154
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.49 E-value=1.1e-12 Score=146.87 Aligned_cols=167 Identities=9% Similarity=0.052 Sum_probs=156.4
Q ss_pred ChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCcHHHHHH
Q psy17306 555 SIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ----------LQEALENYRHAVRLKPDFIDGYIN 624 (904)
Q Consensus 555 ~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~ 624 (904)
..++|+..+.+ ++..+|++..+|+.++.++...|+ +++|++.++++++.+|.+..+|+.
T Consensus 44 ~~eeal~~~~~-----------~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~h 112 (567)
T 1dce_A 44 LDESVLELTSQ-----------ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHH 112 (567)
T ss_dssp CSHHHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCHHHHHHHHH-----------HHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34678999999 999999999999999999999998 999999999999999999999999
Q ss_pred HHHHHHHcC--CHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhcCcCcHHHH
Q psy17306 625 LAAALVAAG--DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG-EIWLAIHHFEKAVSLDPNFLDAY 701 (904)
Q Consensus 625 lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~ 701 (904)
.++++...| ++++|++ .+.++++.+|.+..+|...|++....| .++++++++.++++.+|.+..+|
T Consensus 113 R~w~l~~l~~~~~~~el~-----------~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW 181 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELE-----------LCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW 181 (567)
T ss_dssp HHHHHHTCSSCCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHH
T ss_pred HHHHHHHcccccHHHHHH-----------HHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHH
Confidence 999999999 7799999 777888889999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHh--------------cchhHHHHHHHHhhcccCChhhHHHHHHHHHH
Q psy17306 702 INLGNVLKEA--------------RIFDRANTLFYVSSYFMITDEDIDVILERCEA 743 (904)
Q Consensus 702 ~~la~~~~~~--------------g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 743 (904)
.+++.++... +.+++|++++.+++...|++..+-..++....
T Consensus 182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~ 237 (567)
T 1dce_A 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237 (567)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHh
Confidence 9999999886 77899999999999999999988888776664
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.48 E-value=5.6e-14 Score=135.71 Aligned_cols=157 Identities=18% Similarity=0.128 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchH
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFA 664 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~ 664 (904)
+......+......|.+++|.+.+.......+..+..+..+|.++...|++++|+..|+++++.. |.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----------~~~~ 72 (198)
T 2fbn_A 4 SHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-----------IHTE 72 (198)
T ss_dssp ------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----------TTCT
T ss_pred cccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------hccc
Confidence 44455666777788899999999988877778888999999999999999999999666665544 3333
Q ss_pred ----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhccc
Q psy17306 665 ----------------VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFM 728 (904)
Q Consensus 665 ----------------~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~ 728 (904)
.++.++|.++..+|++++|+.+|+++++++|.++.+++++|.++..+|++++|+.+|++++...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 73 EWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHH
Q psy17306 729 ITDEDIDVILERCEAKTEELNKKF 752 (904)
Q Consensus 729 ~~~~~~~~~l~~~~~~~~~~~~~~ 752 (904)
|++..+...++.+...+++..++.
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887766553
No 156
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.47 E-value=9.6e-13 Score=117.06 Aligned_cols=119 Identities=23% Similarity=0.315 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy17306 41 NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 120 (904)
Q Consensus 41 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 120 (904)
++..+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++..+|.++.++..+|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCC
Q psy17306 121 VAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGR 159 (904)
Q Consensus 121 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 159 (904)
...|++++|+..++++++.+|++..++..++.++...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555554444
No 157
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.47 E-value=2.4e-13 Score=118.67 Aligned_cols=101 Identities=12% Similarity=0.079 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHH
Q psy17306 587 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVA 666 (904)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a 666 (904)
.++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+. .+.++++++|+++.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~-----------~~~~al~l~P~~~~~ 87 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAII-----------ALNHARMLDPKDIAV 87 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCCCCHHH
Confidence 456677777777777777777777777777777777777777777777777777 555556666667777
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcH
Q psy17306 667 WSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL 698 (904)
Q Consensus 667 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 698 (904)
++.+|.++...|++++|+..|+++++++|+++
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 77777777777777777777777777776654
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.47 E-value=6.3e-13 Score=119.53 Aligned_cols=124 Identities=20% Similarity=0.210 Sum_probs=110.7
Q ss_pred hhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy17306 613 RLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692 (904)
Q Consensus 613 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 692 (904)
..+|.++..+..+|.++...|++++|+. .+.+++..+|+++.+++++|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~-----------~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 71 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAA-----------CYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 71 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHH-----------HHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3567889999999999999999999999 66677778889999999999999999999999999999999
Q ss_pred cCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCC-----hhhHHHHHHHHHHHHHH
Q psy17306 693 LDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMIT-----DEDIDVILERCEAKTEE 747 (904)
Q Consensus 693 ~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~~~~~ 747 (904)
++|+++.+++++|.++...|++++|+.+|++++...|+ +..+...+..+..+...
T Consensus 72 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 72 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887 67777777777665543
No 159
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.47 E-value=7.1e-12 Score=125.32 Aligned_cols=223 Identities=9% Similarity=-0.010 Sum_probs=157.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhhcCHH---------H------------HHHHHHHHHhcC
Q psy17306 15 AHREYQAGDYESAERHCMQLWRQETNN-TGVLLLLSSIHFQCRKLD---------K------------SAHFSTLAIKQN 72 (904)
Q Consensus 15 a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~---------~------------A~~~~~~al~~~ 72 (904)
.+..|-.|+|..++.... +..|.+ ......+.++|..+|++. . |+..+++.+...
T Consensus 20 ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~~~~~~~~a~~~la~~~~~~a~~~l~~l~~~~ 96 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVLDLYVQFLDTKNIEELENLLKDK 96 (310)
T ss_dssp HHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCCSSSTTHHHHHHHHHHHTTTCCHHHHHTTTTS
T ss_pred HHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 455677888888877433 233332 234444555666666553 1 333444444444
Q ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----hhhH
Q psy17306 73 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP--DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD----LYCV 146 (904)
Q Consensus 73 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~ 146 (904)
+....++..+|.++...|++++|+..+.+++..+| .+.+++..++.++..+|+.+.|.+.++++.+.+|+ +..+
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~ 176 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEM 176 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHH
Confidence 44556667888888888888888888888888776 67778888888888888888888888888887773 2233
Q ss_pred HHHH--HHHHHHcC--ChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhH
Q psy17306 147 RSDL--GNLLKALG--RLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHF 222 (904)
Q Consensus 147 ~~~l--a~~~~~~~--~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 222 (904)
...+ +.+....| ++.+|..+|
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f------------------------------------------------------- 201 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYY------------------------------------------------------- 201 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHH-------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHH-------------------------------------------------------
Confidence 3333 33354445 666666665
Q ss_pred HHHHhhcCch--hHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17306 223 STLAIKQNPL--LAEAYSNLGNVYKERGQLQEALENYRHAVRL----------KPDFIDGYINLAAALVAAGDMEQAVQA 290 (904)
Q Consensus 223 ~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (904)
+++....|+ .+..+++ ++..+|++++|...++.+++. +|+++.++.+++.+...+|+ +|.++
T Consensus 202 -~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l 275 (310)
T 3mv2_B 202 -EELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDL 275 (310)
T ss_dssp -HHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHH
T ss_pred -HHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHH
Confidence 566666775 3334444 899999999999999988876 48899999999999999998 89999
Q ss_pred HHHHHhhCCCc
Q psy17306 291 YVTALQYNPLL 301 (904)
Q Consensus 291 ~~~al~~~p~~ 301 (904)
++++.+..|++
T Consensus 276 ~~qL~~~~P~h 286 (310)
T 3mv2_B 276 TNQLVKLDHEH 286 (310)
T ss_dssp HHHHHHTTCCC
T ss_pred HHHHHHhCCCC
Confidence 99999999999
No 160
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.47 E-value=3.9e-12 Score=131.33 Aligned_cols=163 Identities=12% Similarity=0.088 Sum_probs=139.8
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc---
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNT------GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL--- 75 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 75 (904)
+.....+...+..++..|++++|+..+.+++...|... ..++.+|.++...|++++|+..+++++...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 34556778899999999999999999999999887654 346678899999999999999999999864432
Q ss_pred ---HHHHHHHHHHHHHhCcHHHHHHHHHHHH---hcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---
Q psy17306 76 ---AEAYSNLGNVYKERGQLQEALENYRHAV---RLKPDFI----DGYINLAAALVAAGDMEQAVQAYVTALQYNPD--- 142 (904)
Q Consensus 76 ---~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--- 142 (904)
..++..+|.+|...|++++|+.+|++++ +..|++. .++.++|.+|..+|++++|+.++++++++.++
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 6689999999999999999999999999 4456543 68999999999999999999999999987532
Q ss_pred ---hhhHHHHHHHHHHHcCChHHH-HHHH
Q psy17306 143 ---LYCVRSDLGNLLKALGRLDEA-KDLY 167 (904)
Q Consensus 143 ---~~~~~~~la~~~~~~~~~~~A-~~~~ 167 (904)
...++..+|.++...|++++| ...+
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~ 260 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 267889999999999999999 6666
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.46 E-value=2e-12 Score=112.47 Aligned_cols=114 Identities=22% Similarity=0.286 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcch
Q psy17306 584 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDF 663 (904)
Q Consensus 584 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~ 663 (904)
.+..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+. .+.+++..+|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~-----------~~~~~~~~~~~~ 71 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYE-----------DGCKTVDLKPDW 71 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-----------HHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHH-----------HHHHHHHhCccc
Confidence 467889999999999999999999999999999999999999999999999999999 666666778888
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 708 (904)
+.++..+|.++...|++++|+..|+++++.+|+++.++..++.+.
T Consensus 72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999888775
No 162
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.45 E-value=1.5e-10 Score=127.69 Aligned_cols=127 Identities=9% Similarity=-0.105 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhChhhHHHhhhcCcch
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG-DMEQAVQAYVTALQYNPSCYLKAIETRPDF 663 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~l~~~p~~ 663 (904)
..+|...+....+.++.+.|...|.++ ...+.....|...|.+-...+ +.+.|...|+ .+++..|+.
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife-----------~al~~~~~~ 353 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFS-----------SGLLKHPDS 353 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHH-----------HHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHH-----------HHHHHCCCC
Confidence 467777888887888899999999999 443335567777777766666 6999999554 444555667
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcc
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYF 727 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 727 (904)
+..|...+......|+.+.|...|+++ +.....|......-...|+.+.+..+++++...
T Consensus 354 ~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 354 TLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 777777888888899999999999998 346788888888888889999999999888753
No 163
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.45 E-value=6.2e-13 Score=115.98 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH
Q psy17306 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699 (904)
Q Consensus 620 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 699 (904)
..++.+|.++...|++++|+. .+.++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~-----------~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 86 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAAL-----------AFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA 86 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhHHHHHHHHHHcCCHHHHHH-----------HHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 357899999999999999999 777788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhcccCChh
Q psy17306 700 AYINLGNVLKEARIFDRANTLFYVSSYFMITDE 732 (904)
Q Consensus 700 a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 732 (904)
+++++|.++...|++++|+..|++++...|++.
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 999999999999999999999999999887643
No 164
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.44 E-value=7.2e-13 Score=123.09 Aligned_cols=131 Identities=13% Similarity=0.082 Sum_probs=111.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHH-------HhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy17306 618 FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYL-------KAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKA 690 (904)
Q Consensus 618 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 690 (904)
.+..+..+|..++..|++++|+..|.+++...+.... .....+|..+.+|+++|.+|..+|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4678899999999999999999988888875221100 011226778899999999999999999999999999
Q ss_pred HhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChh-hHHHHHHHHHHHHHHH
Q psy17306 691 VSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDE-DIDVILERCEAKTEEL 748 (904)
Q Consensus 691 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~~~~~~ 748 (904)
++++|+++.+++.+|.++..+|++++|+..|++++...|++. .+...+..+..++.+.
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887 7788888877766544
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.44 E-value=8.1e-14 Score=153.15 Aligned_cols=147 Identities=15% Similarity=0.135 Sum_probs=130.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc---------------HHHHHHHHHH
Q psy17306 21 AGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL---------------AEAYSNLGNV 85 (904)
Q Consensus 21 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~ 85 (904)
.+++++|+..++.++...|..+..+..+|.+++..|+|++|+..|+++++.+|.+ ..+++++|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777887888888888899999999999999999999999999988887 6899999999
Q ss_pred HHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHH
Q psy17306 86 YKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKD 165 (904)
Q Consensus 86 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 165 (904)
+..+|++++|+.+|++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++++++..
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred HH
Q psy17306 166 LY 167 (904)
Q Consensus 166 ~~ 167 (904)
..
T Consensus 407 ~~ 408 (457)
T 1kt0_A 407 RI 408 (457)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 166
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.42 E-value=4.3e-12 Score=111.68 Aligned_cols=116 Identities=28% Similarity=0.489 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 121 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 121 (904)
+.+++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..|++++..+|.++.++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666666677777777777666666666666666677777
Q ss_pred HcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHc
Q psy17306 122 AAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL 157 (904)
Q Consensus 122 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 157 (904)
..|++++|+..+++++..+|++..++..++.++...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 777777777777777666666666666666666544
No 167
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.42 E-value=3.8e-12 Score=131.42 Aligned_cols=161 Identities=12% Similarity=0.092 Sum_probs=136.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc------
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTG------VLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL------ 74 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------ 74 (904)
....+...+..++..|++++|+..+++++...+..+. .+..+|.++...|++++|+.++++++...+.
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 153 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH
Confidence 3445667788999999999999999999998777655 3335889999999999999999999986433
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh----
Q psy17306 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRL-------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL---- 143 (904)
Q Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---- 143 (904)
...++..+|.+|...|++++|+.+|+++++. .+....++.++|.+|..+|++++|+.++++++++.+..
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 1447999999999999999999999999953 22335689999999999999999999999999875433
Q ss_pred --hhHHHHHHHHHHHcCC-hHHHHHHH
Q psy17306 144 --YCVRSDLGNLLKALGR-LDEAKDLY 167 (904)
Q Consensus 144 --~~~~~~la~~~~~~~~-~~~A~~~~ 167 (904)
..++..+|.++...|+ +++|+..+
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~ 260 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 6789999999999995 69999998
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.42 E-value=1.1e-13 Score=152.51 Aligned_cols=129 Identities=21% Similarity=0.213 Sum_probs=117.4
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcc
Q psy17306 583 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD 662 (904)
Q Consensus 583 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~ 662 (904)
..+.++..+|.++...|++++|++.|+++++++|+++.++.++|.++..+|++++|+. .+.++++.+|+
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-----------~~~~al~l~p~ 72 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG-----------DATRAIELDKK 72 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHSCTT
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHH-----------HHHHHHHhCCC
Confidence 4466788899999999999999999999999999999999999999999999999999 77777788899
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHH--HHHhcchhHHHHHHH
Q psy17306 663 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNV--LKEARIFDRANTLFY 722 (904)
Q Consensus 663 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--~~~~g~~~~A~~~~~ 722 (904)
++.+++++|.+|..+|++++|+..|+++++++|+++.++.+++.+ +..+|++++|++.++
T Consensus 73 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 73 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999 899999999999999
No 169
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.41 E-value=2.4e-12 Score=124.80 Aligned_cols=163 Identities=13% Similarity=0.137 Sum_probs=131.6
Q ss_pred hhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCcHHHHHH
Q psy17306 551 REGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYIN 624 (904)
Q Consensus 551 ~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~ 624 (904)
...|++++|...++. .....+..+.++..+|.++...|++++|+..|++++++ .|....++.+
T Consensus 3 ~~~g~~~~A~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 71 (203)
T 3gw4_A 3 FEAHDYALAERQAQA-----------LLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQ 71 (203)
T ss_dssp ----CHHHHHHHHHH-----------HHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cccccHHHHHHHHHH-----------hcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 457899999986655 33333377899999999999999999999999999994 4556779999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCc-chHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC------c
Q psy17306 625 LAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP-DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN------F 697 (904)
Q Consensus 625 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~ 697 (904)
+|.++...|++++|+..++++++. +. ....+| ..+.++.++|.++...|++++|+.++++++.+.+. .
T Consensus 72 l~~~~~~~g~~~~A~~~~~~al~~----~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 146 (203)
T 3gw4_A 72 VGMVERMAGNWDAARRCFLEEREL----LA-SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----HH-HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH----HH-HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 999999999999999988888863 22 112123 45778999999999999999999999999987321 2
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHhhcccC
Q psy17306 698 LDAYINLGNVLKEARIFDRANTLFYVSSYFMI 729 (904)
Q Consensus 698 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 729 (904)
..++.++|.++...|++++|..+|++++....
T Consensus 147 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999988654
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.41 E-value=3.3e-12 Score=113.61 Aligned_cols=128 Identities=20% Similarity=0.198 Sum_probs=108.1
Q ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCc
Q psy17306 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP 661 (904)
Q Consensus 582 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p 661 (904)
|..+..++.+|.++...|++++|+..|+++++.+|.++.++.++|.++...|++++|+..++++++..|+. ....+
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~ 76 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN----REDYR 76 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS----TTCHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc----chhHH
Confidence 34578899999999999999999999999999999999999999999999999999999666665533220 00001
Q ss_pred chHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcch
Q psy17306 662 DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIF 714 (904)
Q Consensus 662 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 714 (904)
..+.+++.+|.++...|++++|+.+|+++++.+| ++.+...++.+....++.
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 1178999999999999999999999999999999 688999999888776654
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.7e-12 Score=117.15 Aligned_cols=120 Identities=23% Similarity=0.138 Sum_probs=108.7
Q ss_pred HhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHH
Q psy17306 579 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLK 655 (904)
Q Consensus 579 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 655 (904)
..+|..+..++.+|.++...|++++|+..|+++++.+|++ ..++.++|.++...|++++|+. .+.+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~-----------~~~~ 90 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAET-----------EASK 90 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH-----------HHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHH-----------HHHH
Confidence 3567788999999999999999999999999999999997 8899999999999999999999 6666
Q ss_pred hhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy17306 656 AIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLK 709 (904)
Q Consensus 656 ~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 709 (904)
++..+|+++.+++.+|.++...|++++|+.+|+++++++|++..++..++.+..
T Consensus 91 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 91 AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 667788889999999999999999999999999999999999999988887754
No 172
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.40 E-value=7e-12 Score=109.01 Aligned_cols=111 Identities=28% Similarity=0.347 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy17306 43 GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 122 (904)
Q Consensus 43 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 122 (904)
..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444444444455555555555555544444444555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy17306 123 AGDMEQAVQAYVTALQYNPDLYCVRSDLGNL 153 (904)
Q Consensus 123 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 153 (904)
.|++++|+..++++++.+|+++.++..++.+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 5555555555555555555544444444433
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.40 E-value=2.9e-13 Score=142.30 Aligned_cols=142 Identities=17% Similarity=0.125 Sum_probs=91.7
Q ss_pred hCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHH
Q psy17306 580 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI-----------------DGYINLAAALVAAGDMEQAVQAY 642 (904)
Q Consensus 580 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~a~~~lg~~~~~~g~~~~A~~~~ 642 (904)
..+..+..+..+|.++...|++++|+..|++++.+.|++. .+++++|.++..+|++++|+.
T Consensus 174 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~-- 251 (338)
T 2if4_A 174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG-- 251 (338)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH--
Confidence 3455678899999999999999999999999999999877 388999999999999999999
Q ss_pred HHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHH-HHHhcchhHHHHHH
Q psy17306 643 VTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNV-LKEARIFDRANTLF 721 (904)
Q Consensus 643 ~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~-~~~~g~~~~A~~~~ 721 (904)
.+.++++.+|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.++..++.+ ....+..+++...|
T Consensus 252 ---------~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 252 ---------HCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp ---------HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred ---------HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777888899999999999999999999999999999999999999999988 45566788888899
Q ss_pred HHhhcccCChh
Q psy17306 722 YVSSYFMITDE 732 (904)
Q Consensus 722 ~~a~~~~~~~~ 732 (904)
++++...|++.
T Consensus 323 ~~~l~~~p~~~ 333 (338)
T 2if4_A 323 KGIFKGKDEGG 333 (338)
T ss_dssp -----------
T ss_pred HHhhCCCCCCC
Confidence 98888776543
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.38 E-value=5.5e-12 Score=111.90 Aligned_cols=116 Identities=14% Similarity=0.112 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcc
Q psy17306 586 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI---DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD 662 (904)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~ 662 (904)
.+++.+|.++...|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+. .+.+++..+|+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~-----------~~~~~~~~~p~ 71 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEA-----------QFRDLVSRYPT 71 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHH-----------HHHHHHHHCCC
Confidence 3567888888899999999999999999888887 788889999999999999998 55555556666
Q ss_pred h---HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhc
Q psy17306 663 F---AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEAR 712 (904)
Q Consensus 663 ~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 712 (904)
+ +.+++.+|.++..+|++++|+..|++++..+|+++.+...+..+-...+
T Consensus 72 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 72 HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 6 7888899999999999999999999999988888877666655544333
No 175
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.38 E-value=3.2e-11 Score=120.60 Aligned_cols=186 Identities=15% Similarity=0.017 Sum_probs=153.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Q psy17306 27 AERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP--LLAEAYSNLGNVYKERGQLQEALENYRHAVR 104 (904)
Q Consensus 27 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 104 (904)
|+..+++.+...+.+..++..+|.++...|++++|++++.+.+..+| .+..++..++.++..+|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 67777777777666777788999999999999999999999999987 8899999999999999999999999999999
Q ss_pred cCCC------CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHH
Q psy17306 105 LKPD------FIDGYINLAAALVAAG--DMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNL 176 (904)
Q Consensus 105 ~~p~------~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~ 176 (904)
.+|+ .......-|++....| ++.+|...|+++....|+.......+. ++..+|++++|...+
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L--------- 234 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIV--------- 234 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHH---------
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHH---------
Confidence 9983 2333333355566667 999999999999998887322222333 888899999998887
Q ss_pred HHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhc----------CchhHHHHHHHHHHHHH
Q psy17306 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ----------NPLLAEAYSNLGNVYKE 246 (904)
Q Consensus 177 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~~~~lg~~~~~ 246 (904)
+.+.+. +|+++.++.+++.+...
T Consensus 235 -----------------------------------------------~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~ 267 (310)
T 3mv2_B 235 -----------------------------------------------ELLLSDYYSVEQKENAVLYKPTFLANQITLALM 267 (310)
T ss_dssp -----------------------------------------------HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------HHHHHhcccccccccCCCCCHHHHHHHHHHHHH
Confidence 233333 48899999999999999
Q ss_pred hCCHHHHHHHHHHHHhhCCCCHHHH
Q psy17306 247 RGQLQEALENYRHAVRLKPDFIDGY 271 (904)
Q Consensus 247 ~g~~~~A~~~~~~al~~~p~~~~~~ 271 (904)
.|+ +|.++++++.+.+|+++.+.
T Consensus 268 lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 268 QGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp TTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred hCh--HHHHHHHHHHHhCCCChHHH
Confidence 998 89999999999999998764
No 176
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.37 E-value=9.5e-13 Score=116.48 Aligned_cols=99 Identities=16% Similarity=0.178 Sum_probs=84.3
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHH
Q psy17306 596 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME---QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGC 672 (904)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~ 672 (904)
.+.+.+++|+..|+++++++|+++.+|+++|.++...++++ +|++.+++|+. .|+++++++|+++.+|+++|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~----~le~AL~ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAIT----KFEEALLIDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH----HHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHH----HHHHHHHhCcCcHHHHHHHHH
Confidence 35567999999999999999999999999999999988764 34444445554 889999999999999999999
Q ss_pred HHHhCC-----------CHHHHHHHHHHHHhcCcCcH
Q psy17306 673 VFNAQG-----------EIWLAIHHFEKAVSLDPNFL 698 (904)
Q Consensus 673 ~~~~~g-----------~~~~A~~~~~~al~~~p~~~ 698 (904)
+|..+| ++++|+.+|++|++++|++.
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 999885 78888888888888888875
No 177
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=9e-12 Score=113.57 Aligned_cols=119 Identities=15% Similarity=0.106 Sum_probs=104.5
Q ss_pred hCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHH
Q psy17306 37 QETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL---AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 113 (904)
Q Consensus 37 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 113 (904)
..|.+...++.+|.+++..|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++..+|.++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 456678888899999999999999999999999988887 78889999999999999999999999999999989999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy17306 114 INLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLK 155 (904)
Q Consensus 114 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 155 (904)
..+|.++...|++++|+..|+++++++|++..++..++.+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 999999999999999999999999999988888877776653
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.37 E-value=5.2e-12 Score=133.93 Aligned_cols=126 Identities=21% Similarity=0.274 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 584 LAEAYSNLGNVYKERGQLQEALENYRHAVR----------------LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 647 (904)
Q Consensus 584 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 647 (904)
.+..+..+|.++...|++++|+..|+++++ .+|.+..++.++|.++..+|++++|+.
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~------- 294 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD------- 294 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH-------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH-------
Confidence 356799999999999999999999999999 566666777777777777777777777
Q ss_pred hChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHH
Q psy17306 648 YNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTL 720 (904)
Q Consensus 648 ~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 720 (904)
.+.++++.+|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+++++++...
T Consensus 295 ----~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 295 ----SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp ----HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666777777777777777777777777777777777777777777777777777777766543
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.36 E-value=9.5e-12 Score=110.34 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc---HHHHHHHH
Q psy17306 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNT---GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL---AEAYSNLG 83 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la 83 (904)
+++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 355666666666666666666666666666655 566666666666666666666666666666655 55566666
Q ss_pred HHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy17306 84 NVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 119 (904)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 119 (904)
.++...|++++|+..|++++...|+++.+......+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 666666666666666666666666655544444333
No 180
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.36 E-value=8.9e-12 Score=120.77 Aligned_cols=150 Identities=21% Similarity=0.286 Sum_probs=123.1
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHh------cCcccHHHHHHHHHHHHHhCc
Q psy17306 18 EYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK------QNPLLAEAYSNLGNVYKERGQ 91 (904)
Q Consensus 18 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~g~ 91 (904)
++..|++++|...++.+....+..+.++..+|.++...|++++|+..+++++. ..|....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 46789999999966655543336788999999999999999999999999998 456678899999999999999
Q ss_pred HHHHHHHHHHHHhc---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--h----hhHHHHHHHHHHHcC
Q psy17306 92 LQEALENYRHAVRL---KPD----FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD--L----YCVRSDLGNLLKALG 158 (904)
Q Consensus 92 ~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~ 158 (904)
+++|+..+++++.+ .++ ...++..+|.++...|++++|+..+++++.+.+. + ..++..+|.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999999998 442 3567899999999999999999999999976322 1 234678888888888
Q ss_pred ChHHHHHHH
Q psy17306 159 RLDEAKDLY 167 (904)
Q Consensus 159 ~~~~A~~~~ 167 (904)
++++|...+
T Consensus 162 ~~~~A~~~~ 170 (203)
T 3gw4_A 162 NLLEAQQHW 170 (203)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 888888887
No 181
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.35 E-value=2.6e-12 Score=110.61 Aligned_cols=106 Identities=20% Similarity=0.209 Sum_probs=64.4
Q ss_pred CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcC
Q psy17306 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETR 660 (904)
Q Consensus 581 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~ 660 (904)
+|+++.+++.+|.++...|++++|+..|+++++.+|.+..++.++|.++...|++++|+. .+.++++.+
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~-----------~~~~a~~~~ 70 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD-----------CYNYVINVI 70 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHTS
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHH-----------HHHHHHHhC
Confidence 355555666666666666666666666666666666666666666666666666666666 444444445
Q ss_pred cc--hHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhcCcCc
Q psy17306 661 PD--FAVAWSNLGCVFNAQ-GEIWLAIHHFEKAVSLDPNF 697 (904)
Q Consensus 661 p~--~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~ 697 (904)
|+ ++.++..+|.++... |++++|++++++++..+|.+
T Consensus 71 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 55 556666666666666 66666666666666665543
No 182
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.34 E-value=1.8e-12 Score=114.68 Aligned_cols=88 Identities=20% Similarity=0.211 Sum_probs=75.4
Q ss_pred hhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCcHH
Q psy17306 551 REGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL----------QEALENYRHAVRLKPDFID 620 (904)
Q Consensus 551 ~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~ 620 (904)
.+.+.+++|+..+++ +++.+|+++.+|+++|.++...+++ ++|+..|+++++++|++..
T Consensus 13 ~r~~~feeA~~~~~~-----------Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~ 81 (158)
T 1zu2_A 13 DRILLFEQIRQDAEN-----------TYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE 81 (158)
T ss_dssp HHHHHHHHHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhHHHHHHHHHHH-----------HHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH
Confidence 355678888888888 9999999999999999999998875 5999999999999999999
Q ss_pred HHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhC
Q psy17306 621 GYINLAAALVAAG-----------DMEQAVQAYVTALQYN 649 (904)
Q Consensus 621 a~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~ 649 (904)
+|+++|.+|..+| ++++|+++|+++++++
T Consensus 82 A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 82 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 9999999999885 6777777444444433
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.34 E-value=9e-13 Score=145.27 Aligned_cols=136 Identities=21% Similarity=0.216 Sum_probs=121.2
Q ss_pred HHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q psy17306 541 YVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 620 (904)
Q Consensus 541 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (904)
..+..+|..+...|++++|+..|++ +++.+|+++.+++++|.++..+|++++|+..|+++++++|+++.
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~-----------Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 75 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQ-----------AIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK 75 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH-----------HHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Confidence 3458999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHH--HHhCCCHHHHHHHHH----------
Q psy17306 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCV--FNAQGEIWLAIHHFE---------- 688 (904)
Q Consensus 621 a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~--~~~~g~~~~A~~~~~---------- 688 (904)
+++++|.+|..+|++++|++ .+.++++.+|+++.++..++.+ +...|++++|++.++
T Consensus 76 ~~~~lg~~~~~~g~~~eA~~-----------~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 144 (477)
T 1wao_1 76 GYYRRAASNMALGKFRAALR-----------DYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLD 144 (477)
T ss_dssp HHHHHHHHHHHHTCHHHHHH-----------HHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCT
T ss_pred HHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhh
Confidence 99999999999999999999 6666667788888899999998 889999999999999
Q ss_pred -HHHhcCcCcH
Q psy17306 689 -KAVSLDPNFL 698 (904)
Q Consensus 689 -~al~~~p~~~ 698 (904)
+++.++|+..
T Consensus 145 ~~al~~~~~~~ 155 (477)
T 1wao_1 145 IESMTIEDEYS 155 (477)
T ss_dssp TSSCCCCTTCC
T ss_pred hhhcccccccc
Confidence 8888877653
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.33 E-value=3e-12 Score=134.46 Aligned_cols=138 Identities=10% Similarity=-0.033 Sum_probs=91.0
Q ss_pred HHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchH-----------------HHHHHHHHHHHHcCCHH
Q psy17306 540 KYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLA-----------------EAYSNLGNVYKERGQLQ 602 (904)
Q Consensus 540 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~ 602 (904)
+..+..+|..++..|++++|+..|++ ++...|.+. .+++++|.++..+|+++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~-----------Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~ 247 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEM-----------AIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYD 247 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHH-----------HHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH-----------HHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 45678999999999999999999999 888888876 48999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHH-HhCCCHH
Q psy17306 603 EALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVF-NAQGEIW 681 (904)
Q Consensus 603 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~-~~~g~~~ 681 (904)
+|+..|+++++++|+++.+++++|.+|..+|++++|+. .|.++++++|+++.++..++.+. ...+..+
T Consensus 248 ~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~-----------~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 248 EAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARD-----------DFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH-----------HHHHTTC------------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 77788888999999999999984 4567788
Q ss_pred HHHHHHHHHHhcCcCcHH
Q psy17306 682 LAIHHFEKAVSLDPNFLD 699 (904)
Q Consensus 682 ~A~~~~~~al~~~p~~~~ 699 (904)
++...|.+++...|+++.
T Consensus 317 ~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHhhCCCCCCCC
Confidence 999999999999998754
No 185
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.33 E-value=6.1e-12 Score=108.23 Aligned_cols=107 Identities=18% Similarity=0.139 Sum_probs=96.9
Q ss_pred CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCC--CHHHHHH
Q psy17306 38 ETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD--FIDGYIN 115 (904)
Q Consensus 38 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 115 (904)
+|+++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+.+|+++++.+|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57888888999999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhcCCChh
Q psy17306 116 LAAALVAA-GDMEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 116 la~~~~~~-g~~~~A~~~~~~al~~~p~~~ 144 (904)
+|.++... |++++|++++++++...|.++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999 999999999999999888753
No 186
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.31 E-value=2.1e-11 Score=108.32 Aligned_cols=116 Identities=18% Similarity=0.239 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc-------HHH
Q psy17306 6 QLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL-------AEA 78 (904)
Q Consensus 6 ~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 78 (904)
..+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++...|.+ ..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3456667777777777777777777777777777777777777777777777777777777777766655 666
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy17306 79 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 122 (904)
Q Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 122 (904)
++.+|.++...|++++|+.+|++++...| ++..+..++.+...
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 67777777777777777777777777666 45555555555443
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.31 E-value=2.3e-12 Score=111.95 Aligned_cols=95 Identities=14% Similarity=0.172 Sum_probs=74.2
Q ss_pred HcCCHHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHH
Q psy17306 597 ERGQLQEALENYRHAVRL---KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCV 673 (904)
Q Consensus 597 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~ 673 (904)
..|++++|+..|++++++ +|+++.+++++|.++..+|++++|+. .+.++++.+|+++.+++++|.+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~-----------~~~~al~~~p~~~~~~~~l~~~ 70 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEA-----------VLANGVKQFPNHQALRVFYAMV 70 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCCCchHHHHHHHHH
Confidence 357788888888888888 57778888888888888888888888 6666667778888888888888
Q ss_pred HHhCCCHHHHHHHHHHHHhcCcCcHHHHH
Q psy17306 674 FNAQGEIWLAIHHFEKAVSLDPNFLDAYI 702 (904)
Q Consensus 674 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 702 (904)
+...|++++|+..|++++..+|+++.+..
T Consensus 71 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 71 LYNLGRYEQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 88888888888888888888888876543
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.30 E-value=2e-11 Score=113.19 Aligned_cols=141 Identities=21% Similarity=0.210 Sum_probs=119.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhh
Q psy17306 584 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAI 657 (904)
Q Consensus 584 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l 657 (904)
.+.++..+|.++...|++++|+..|++++++.+.. ..++.++|.++...|++++|+..++++++..+. .
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-----~ 82 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ-----L 82 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----T
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----h
Confidence 46789999999999999999999999999985543 258999999999999999999999888864322 1
Q ss_pred hcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCc------CcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccC
Q psy17306 658 ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP------NFLDAYINLGNVLKEARIFDRANTLFYVSSYFMI 729 (904)
Q Consensus 658 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 729 (904)
...+..+.++.++|.++...|++++|+.++++++++.+ ..+.++..+|.++...|++++|..++++++....
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 22233467899999999999999999999999998832 3367899999999999999999999999987543
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.29 E-value=7e-12 Score=108.84 Aligned_cols=94 Identities=21% Similarity=0.245 Sum_probs=67.9
Q ss_pred hcCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17306 55 CRKLDKSAHFSTLAIKQ---NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 131 (904)
Q Consensus 55 ~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 131 (904)
.|++++|+..|+++++. +|+++.+++.+|.++..+|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56777777777777777 577777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCChhhHHH
Q psy17306 132 AYVTALQYNPDLYCVRS 148 (904)
Q Consensus 132 ~~~~al~~~p~~~~~~~ 148 (904)
.+++++...|+++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 77777777777665543
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.28 E-value=2.7e-11 Score=128.44 Aligned_cols=142 Identities=13% Similarity=0.195 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
.+..+..+|..++..|++++|+..|+++++..|..+ +..........+|.+..++.++|.++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555554322210 00112222236777888888888888
Q ss_pred HHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHH
Q psy17306 87 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDL 166 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 166 (904)
..+|++++|+.+++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++.+++...
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888777654
No 191
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.26 E-value=1.9e-08 Score=110.79 Aligned_cols=124 Identities=8% Similarity=-0.003 Sum_probs=95.0
Q ss_pred HHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCcHH
Q psy17306 542 VYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG-QLQEALENYRHAVRLKPDFID 620 (904)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~ 620 (904)
+|...+......+..+.|...|.+ + ...+.....|...|.+....+ +.+.|...|+.+++..|+.+.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~-----------A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~ 355 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIE-----------L-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTL 355 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHH-----------H-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH-----------h-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHH
Confidence 345555555566778999999998 7 333334567776677666655 699999999999999999998
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy17306 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692 (904)
Q Consensus 621 a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 692 (904)
.+...+......|+.+.|...|+ ++ +.....|......-...|+.+.+...+++++.
T Consensus 356 ~~~~yid~e~~~~~~~~aR~l~e-----------r~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 356 LKEEFFLFLLRIGDEENARALFK-----------RL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-----------HS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH-----------HH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888899999999999544 43 22456777777777778999999998998875
No 192
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.26 E-value=1.7e-10 Score=126.97 Aligned_cols=205 Identities=15% Similarity=0.098 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNT-----------------GVLLLLSSIHFQCRKLDKSAHFSTLAIKQ 71 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~ 71 (904)
.+.+..|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|.+++.+++..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999888642 36889999999999999999999999886
Q ss_pred Ccc------cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy17306 72 NPL------LAEAYSNLGNVYKERGQLQEALENYRHAVRLK------PDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 139 (904)
Q Consensus 72 ~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 139 (904)
.+. ...+...+|.++...|++++|+..+++++... +....++..+|.++...|++++|+..+++++..
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 443 23456678888889999999999999998763 334678899999999999999999999999865
Q ss_pred ------CCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCC
Q psy17306 140 ------NPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRK 213 (904)
Q Consensus 140 ------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (904)
.+....++..++.+|...|++++|...+ .+|+....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~----------------~~al~~~~---------------------- 206 (434)
T 4b4t_Q 165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASL----------------TAARTAAN---------------------- 206 (434)
T ss_dssp HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHH----------------HHHHHHHH----------------------
T ss_pred HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHH----------------HHHHHHhh----------------------
Confidence 2334567888888888888888888777 33332221
Q ss_pred cchHHHhhHHHHHhhcCc-hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy17306 214 PTTLESAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEALENYRHAVRL 263 (904)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 263 (904)
.+...+ .....+..+|.++...|+|.+|..+|.+++..
T Consensus 207 ------------~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 207 ------------SIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp ------------HSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred ------------cCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 111111 12567778899999999999999999988864
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.25 E-value=4.5e-11 Score=110.80 Aligned_cols=148 Identities=20% Similarity=0.223 Sum_probs=117.8
Q ss_pred HHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 539 TKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 618 (904)
Q Consensus 539 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (904)
.+.++..+|.++...|++++|+..+++.++.... ....+....++..+|.++...|++++|+..|++++++.+..
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-----FGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-----hCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 3567799999999999999999999993332210 00011223689999999999999999999999999875442
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy17306 619 ------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692 (904)
Q Consensus 619 ------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 692 (904)
..++.++|.++...|++++|+..++++++..+ .....+..+.++..+|.++...|++++|+.+++++++
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ-----ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----HccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56899999999999999999999998886422 1223345578899999999999999999999999998
Q ss_pred cCcC
Q psy17306 693 LDPN 696 (904)
Q Consensus 693 ~~p~ 696 (904)
+...
T Consensus 158 ~~~~ 161 (164)
T 3ro3_A 158 ISRE 161 (164)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 7543
No 194
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.20 E-value=3.3e-10 Score=124.50 Aligned_cols=209 Identities=10% Similarity=0.059 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc-----------------HHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL-----------------AEAYSNLGNVYKERGQLQEALENYRHAVR 104 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 104 (904)
|.+....|..+...|+|++|++.|.++++..|.. ..++..+|.+|...|++++|+..+.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4567778889999999999999999999987653 24688999999999999999999999998
Q ss_pred cCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CChhhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17306 105 LKPDFI------DGYINLAAALVAAGDMEQAVQAYVTALQYN------PDLYCVRSDLGNLLKALGRLDEAKDLYCVRSD 172 (904)
Q Consensus 105 ~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (904)
..+... .+...+|.++...|++++|+..+++++... +....++..+|.++...|++++|...+
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l----- 158 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALI----- 158 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHH-----
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHH-----
Confidence 755432 345667888888999999999999998763 233567788888888888888888877
Q ss_pred hHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHH
Q psy17306 173 LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 252 (904)
Q Consensus 173 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 252 (904)
.++..... .....+....++..+|.+|...|++++
T Consensus 159 -----------~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (434)
T 4b4t_Q 159 -----------NDLLREFK----------------------------------KLDDKPSLVDVHLLESKVYHKLRNLAK 193 (434)
T ss_dssp -----------HHHHHHHT----------------------------------TSSCSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----------HHHHHHHH----------------------------------hcccchhHHHHHHHHHHHHHHhCcHHH
Confidence 22222221 112345668899999999999999999
Q ss_pred HHHHHHHHHhhC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17306 253 ALENYRHAVRLK---PDF----IDGYINLAAALVAAGDMEQAVQAYVTALQYNPL 300 (904)
Q Consensus 253 A~~~~~~al~~~---p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 300 (904)
|...+++++... +.. ...+..+|.++...|++.+|..+|.+++...+.
T Consensus 194 A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~ 248 (434)
T 4b4t_Q 194 SKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHN 248 (434)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence 999999998763 222 346778899999999999999999999876543
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.16 E-value=2.7e-10 Score=123.96 Aligned_cols=137 Identities=14% Similarity=0.056 Sum_probs=117.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhh-h
Q psy17306 588 YSNLGNVYKERGQLQEALENYRHAVRL--------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAI-E 658 (904)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l-~ 658 (904)
....+..+..+|+|++|+..|++++++ +|+...++.+||.+|..+|+|++|+.+++++|+ .+.+.+ .
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~----i~~~~lG~ 387 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD----GYMKLYHH 387 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHHSCT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----HHHHHcCC
Confidence 334555677899999999999999987 344456899999999999999999999999998 444443 3
Q ss_pred cCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--------CcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhccc
Q psy17306 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL--------DPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFM 728 (904)
Q Consensus 659 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~ 728 (904)
.+|+.+..+++||.+|..+|++++|+..|++|+++ +|.......+++.++.++|.+++|...|+++++..
T Consensus 388 ~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 388 NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999998 45556677899999999999999999999987644
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.15 E-value=7.4e-11 Score=101.20 Aligned_cols=96 Identities=17% Similarity=0.137 Sum_probs=88.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc
Q psy17306 618 FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697 (904)
Q Consensus 618 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 697 (904)
++.++..+|.++...|++++|+. .+.+++..+|+++.+++++|.++..+|++++|+..|+++++++|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~-----------~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVH-----------CYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 46789999999999999999999 6667777888899999999999999999999999999999999998
Q ss_pred ------HHHHHHHHHHHHHhcchhHHHHHHHHh
Q psy17306 698 ------LDAYINLGNVLKEARIFDRANTLFYVS 724 (904)
Q Consensus 698 ------~~a~~~la~~~~~~g~~~~A~~~~~~a 724 (904)
..+++.+|.++...|++++|+..|++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 72 EHVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 999999999999999999998887654
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.11 E-value=6e-10 Score=96.14 Aligned_cols=83 Identities=18% Similarity=0.249 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHH
Q psy17306 603 EALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL 682 (904)
Q Consensus 603 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~ 682 (904)
+|+..|+++++.+|+++.+++++|.++...|++++|+. .+.+++..+|+++.+|+.+|.++...|++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-----------~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 71 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALP-----------HLRAALDFDPTYSVAWKWLGKTLQGQGDRAG 71 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHH-----------HHHHHHHHCCCcHHHHHHHHHHHHHcCCHHH
Confidence 35566666666666666666666666666666666666 4444445555556666666666666666666
Q ss_pred HHHHHHHHHhcCcC
Q psy17306 683 AIHHFEKAVSLDPN 696 (904)
Q Consensus 683 A~~~~~~al~~~p~ 696 (904)
|+..|+++++++|.
T Consensus 72 A~~~~~~al~~~~~ 85 (115)
T 2kat_A 72 ARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc
Confidence 66666666666553
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.06 E-value=1e-09 Score=89.89 Aligned_cols=85 Identities=38% Similarity=0.579 Sum_probs=75.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC
Q psy17306 617 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696 (904)
Q Consensus 617 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 696 (904)
.++.+++.+|.++...|++++|+. .+.+++..+|+++.+++.+|.++...|++++|+.+|+++++++|+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~-----------~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIE-----------YYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccHHHHHHHHHHHHHccCHHHHHH-----------HHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 457789999999999999999999 666666778888899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhc
Q psy17306 697 FLDAYINLGNVLKEAR 712 (904)
Q Consensus 697 ~~~a~~~la~~~~~~g 712 (904)
++.++.++|.++..+|
T Consensus 76 ~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 76 NAEAKQNLGNAKQKQG 91 (91)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999988765
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.05 E-value=1.4e-10 Score=99.48 Aligned_cols=95 Identities=22% Similarity=0.288 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcch
Q psy17306 584 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDF 663 (904)
Q Consensus 584 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~ 663 (904)
++.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++..+|++++|+. .+.+++..+|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-----------~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQ-----------MCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH-----------HHHHHHHhCCCc
Confidence 467899999999999999999999999999999999999999999999999999999 666666777777
Q ss_pred ------HHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy17306 664 ------AVAWSNLGCVFNAQGEIWLAIHHFEK 689 (904)
Q Consensus 664 ------~~a~~~lg~~~~~~g~~~~A~~~~~~ 689 (904)
+.+++.+|.++...|+++.|+..+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 72 EHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 88999999999999988888776654
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.02 E-value=1.1e-09 Score=94.51 Aligned_cols=83 Identities=23% Similarity=0.246 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy17306 60 KSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 139 (904)
Q Consensus 60 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 139 (904)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555555555555555555666666666666666666666666666655555666666666666666666666666555
Q ss_pred CCC
Q psy17306 140 NPD 142 (904)
Q Consensus 140 ~p~ 142 (904)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 543
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.01 E-value=2.4e-09 Score=87.70 Aligned_cols=86 Identities=40% Similarity=0.599 Sum_probs=79.6
Q ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCc
Q psy17306 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP 661 (904)
Q Consensus 582 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p 661 (904)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+. .+.+++..+|
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-----------~~~~a~~~~p 74 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE-----------YYQKALELDP 74 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCT
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHH-----------HHHHHHhcCC
Confidence 45688999999999999999999999999999999999999999999999999999999 6667777889
Q ss_pred chHHHHHHHHHHHHhCC
Q psy17306 662 DFAVAWSNLGCVFNAQG 678 (904)
Q Consensus 662 ~~~~a~~~lg~~~~~~g 678 (904)
+++.++.++|.++...|
T Consensus 75 ~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 75 NNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 99999999999998765
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.94 E-value=7.9e-09 Score=112.50 Aligned_cols=144 Identities=13% Similarity=-0.041 Sum_probs=118.5
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-------- 614 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 614 (904)
....+..+..+|+|++|+.++++.+++....+ -..+|....++.+||.+|..+|+|++|+.++++++++
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~l---g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 388 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVF---ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN 388 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTB---CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 34455567789999999999999555433221 1235667789999999999999999999999999987
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhh-hcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 615 KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAI-ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 615 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l-~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
+|+....+++||.+|..+|++++|+..|+++++ .+.+.+ ..+|........++.++..+|.+++|...|.++.+.
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~----i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYA----ILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566899999999999999999999999998 444443 356888888999999999999999999999998764
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.93 E-value=1.7e-09 Score=90.27 Aligned_cols=77 Identities=17% Similarity=0.206 Sum_probs=69.2
Q ss_pred cCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHH
Q psy17306 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDID 735 (904)
Q Consensus 659 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 735 (904)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++++|.+|...|++++|+..|++++...+...+..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 78 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK 78 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchh
Confidence 47899999999999999999999999999999999999999999999999999999999999999998876544433
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.93 E-value=4.5e-09 Score=87.69 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=75.7
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 614 LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 614 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
.+|+++.+++.+|.++...|++++|+. .+.++++.+|+++.+|+.+|.+|...|++++|+..|++++++
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~-----------~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALA-----------LFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 479999999999999999999999999 777777888999999999999999999999999999999999
Q ss_pred CcC--cHHHHHHHHHHHHHhcch
Q psy17306 694 DPN--FLDAYINLGNVLKEARIF 714 (904)
Q Consensus 694 ~p~--~~~a~~~la~~~~~~g~~ 714 (904)
.|. +..+...+..++...+..
T Consensus 71 ~~~~~~~~~~~~l~~~l~~~~~~ 93 (100)
T 3ma5_A 71 AREEGTQKDLSELQDAKLKAEGL 93 (100)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTT
T ss_pred hhcCCchhHHHHHHHHHHHcccc
Confidence 765 455666666666655543
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.87 E-value=3e-08 Score=88.26 Aligned_cols=119 Identities=22% Similarity=0.155 Sum_probs=69.4
Q ss_pred ChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH---
Q psy17306 555 SIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA--- 631 (904)
Q Consensus 555 ~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~--- 631 (904)
++++|+.+|++ +.+.....+ . +|.+|...+..++|+.+|+++.+. .++.+++++|.+|..
T Consensus 10 d~~~A~~~~~~-----------aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 72 (138)
T 1klx_A 10 DLKKAIQYYVK-----------ACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKY 72 (138)
T ss_dssp HHHHHHHHHHH-----------HHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHH-----------HHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCC
Confidence 45556666666 555543222 2 666666666666666666666665 456666666666666
Q ss_pred -cCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCcCcHHHHHHHH
Q psy17306 632 -AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNA----QGEIWLAIHHFEKAVSLDPNFLDAYINLG 705 (904)
Q Consensus 632 -~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la 705 (904)
.+++++|+.+|+++ .+. .++.++++||.+|.. .+++++|+.+|++|.+.. ++.+..+|+
T Consensus 73 ~~~d~~~A~~~~~~A-----------a~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 73 VKKDLRKAAQYYSKA-----------CGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp SCCCHHHHHHHHHHH-----------HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred CCccHHHHHHHHHHH-----------HcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 56666666633333 222 345666666666666 666666666666666652 344444443
No 206
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.87 E-value=4e-09 Score=87.97 Aligned_cols=91 Identities=18% Similarity=0.304 Sum_probs=77.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHH
Q psy17306 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAV-AWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700 (904)
Q Consensus 622 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 700 (904)
.+.+|.++...|++++|+. .+.++++.+|+++. +++.+|.++..+|++++|+..|+++++++|+++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~-----------~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQ-----------ALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp THHHHHHHHHHTCHHHHHH-----------HHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHHHHHHcCCHHHHHH-----------HHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 3578889999999999999 66677777888888 99999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhcchhHHHHHHHHhhcccCCh
Q psy17306 701 YINLGNVLKEARIFDRANTLFYVSSYFMITD 731 (904)
Q Consensus 701 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 731 (904)
+.+ +.+.+|+..|+++....|++
T Consensus 72 ~~~--------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 72 QAR--------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred HHH--------HHHHHHHHHHHHHhccCccc
Confidence 754 77888888888887766543
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.85 E-value=3.6e-09 Score=88.27 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=81.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHH
Q psy17306 588 YSNLGNVYKERGQLQEALENYRHAVRLKPDFID-GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVA 666 (904)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a 666 (904)
.+.+|.++...|++++|+..|+++++.+|+++. +++++|.++..+|++++|+. .+.++++.+|+++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~-----------~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALN-----------NYQSAIELNPDSPAL 71 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHH-----------HHHHHHHHCTTSTHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHhcCCCcHHH
Confidence 367899999999999999999999999999999 99999999999999999999 666667778888777
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcH
Q psy17306 667 WSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL 698 (904)
Q Consensus 667 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 698 (904)
+.+ +.+.+|+..|++++..+|+++
T Consensus 72 ~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 72 QAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHH--------HHHHHHHHHHHHHhccCcccc
Confidence 754 667899999999998887653
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.83 E-value=5.1e-08 Score=86.71 Aligned_cols=120 Identities=19% Similarity=0.142 Sum_probs=103.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----hCcHHHHHH
Q psy17306 22 GDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE----RGQLQEALE 97 (904)
Q Consensus 22 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 97 (904)
+++++|+.+|+++.+..+. .+. +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 5789999999999987644 344 999999999999999999999986 678999999999998 899999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChhhHHHHHH
Q psy17306 98 NYRHAVRLKPDFIDGYINLAAALVA----AGDMEQAVQAYVTALQYNPDLYCVRSDLG 151 (904)
Q Consensus 98 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 151 (904)
+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+.. ++.+...++
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 99999987 678999999999999 899999999999999874 344444443
No 209
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.82 E-value=1.6e-07 Score=91.07 Aligned_cols=111 Identities=14% Similarity=0.037 Sum_probs=89.7
Q ss_pred CCCcHHHHHHHHHHHHH---c--CCHHHHHHHHHHHHhhChhhHHHhhhcCcc--hHHHHHHHHHHHHhC-----CCHHH
Q psy17306 615 KPDFIDGYINLAAALVA---A--GDMEQAVQAYVTALQYNPSCYLKAIETRPD--FAVAWSNLGCVFNAQ-----GEIWL 682 (904)
Q Consensus 615 ~p~~~~a~~~lg~~~~~---~--g~~~~A~~~~~~al~~~~~~~~~~l~~~p~--~~~a~~~lg~~~~~~-----g~~~~ 682 (904)
+|+++.+++..|.+... . |. -.|+.....+.. .++++++++|+ +..+|..+|.+|... |+.++
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg-~~Al~~l~~A~a----~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ek 222 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLG-SALPDTVHAAVM----MLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEK 222 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTT-SCCHHHHHHHHH----HHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHH
T ss_pred CccccHHHHHHHHHHHHHHhcCCCC-hHHHHhHHHHHH----HHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHH
Confidence 46667788877776644 2 22 123333333333 78888889998 677999999999995 99999
Q ss_pred HHHHHHHHHhcCcCc-HHHHHHHHHHHHHh-cchhHHHHHHHHhhcccCC
Q psy17306 683 AIHHFEKAVSLDPNF-LDAYINLGNVLKEA-RIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 683 A~~~~~~al~~~p~~-~~a~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~ 730 (904)
|.++|++|++++|+. ..+++.+|..++.. |++++|..++++++...+.
T Consensus 223 A~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 223 AHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 999999999999975 99999999999884 9999999999999998886
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.81 E-value=9.7e-08 Score=97.06 Aligned_cols=150 Identities=14% Similarity=0.134 Sum_probs=116.0
Q ss_pred HHhCCchHH--HHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhh
Q psy17306 578 IKQNPLLAE--AYSNLGNVYKERGQ---LQEALENYRHAVRLKPDFIDGYINLAAALVAAGD----MEQAVQAYVTALQY 648 (904)
Q Consensus 578 l~~~p~~~~--~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~----~~~A~~~~~~al~~ 648 (904)
....|.++. -++..|..+...+. ..+|+.+|+++++++|+++.++..++.+|..... .......+..++.
T Consensus 187 ~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~- 265 (372)
T 3ly7_A 187 QKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID- 265 (372)
T ss_dssp HHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-
T ss_pred hccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH-
Confidence 344555544 44566777766554 5899999999999999999999988888863211 1122222222221
Q ss_pred ChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhccc
Q psy17306 649 NPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFM 728 (904)
Q Consensus 649 ~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~ 728 (904)
-..++..+|.++.++..+|.++...|++++|+..+++|+.++|+ ..++..+|.++...|++++|++.|.+|+...
T Consensus 266 ----a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 266 ----NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp ----HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ----HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 11345678999999999999999999999999999999999975 6788999999999999999999999999999
Q ss_pred CChhh
Q psy17306 729 ITDED 733 (904)
Q Consensus 729 ~~~~~ 733 (904)
|.+..
T Consensus 341 P~~~t 345 (372)
T 3ly7_A 341 PGANT 345 (372)
T ss_dssp CSHHH
T ss_pred CCcCh
Confidence 97753
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.77 E-value=1.5e-07 Score=95.78 Aligned_cols=136 Identities=15% Similarity=0.084 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCH-------HHHHH-HHHH--HHhcCcc
Q psy17306 8 GIGLLELAHREYQAGD---YESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKL-------DKSAH-FSTL--AIKQNPL 74 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-------~~A~~-~~~~--al~~~p~ 74 (904)
+-.++.+|..++..++ +.+|+.+|+++++.+|+.+.++..++.++.....+ ..++. .+.. ++..+|.
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~ 275 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN 275 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence 4456778888877665 48899999999999999999999888887532111 11111 2221 2245788
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChh
Q psy17306 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 144 (904)
++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++|+.++|...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 8999999999999999999999999999999975 67888999999999999999999999999999875
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.73 E-value=1.2e-07 Score=91.99 Aligned_cols=170 Identities=13% Similarity=0.007 Sum_probs=123.3
Q ss_pred HHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhc--------------CChhHHHHHHHHHhhhhhhHHH----
Q psy17306 514 AYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREG--------------GSIPITLTFECRKLDKSAHFST---- 575 (904)
Q Consensus 514 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~~l~~a~~~~~---- 575 (904)
.++..++.++..+|+|.........+- ...+..+.+. .++..|..+|.+..+-+...++
T Consensus 50 ~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly---~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~ 126 (301)
T 3u64_A 50 LVLKVYEALHLQNPAHRGLSLAVGRLY---IMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYP 126 (301)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH---HHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHH---HHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 345566677788999988874443333 3333322221 2355677777765543322211
Q ss_pred ----------------HHHHhCCchHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHhhCCC--cHHHHHHHH
Q psy17306 576 ----------------LAIKQNPLLAEAYSNLGNVYKE---R--G------QLQEALENYRHAVRLKPD--FIDGYINLA 626 (904)
Q Consensus 576 ----------------~al~~~p~~~~~~~~lg~~~~~---~--g------~~~~A~~~~~~al~~~p~--~~~a~~~lg 626 (904)
..-..+|+++.+++..|.+... . | ....|...++++++++|+ +..+|..+|
T Consensus 127 ~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG 206 (301)
T 3u64_A 127 GFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLT 206 (301)
T ss_dssp THHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred cHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHH
Confidence 1223467788888888877643 1 3 257899999999999999 566999999
Q ss_pred HHHHHc-----CCHHHHHHHHHHHHhhChhhHHHhhhcCcch-HHHHHHHHHHHHh-CCCHHHHHHHHHHHHhcCcCc
Q psy17306 627 AALVAA-----GDMEQAVQAYVTALQYNPSCYLKAIETRPDF-AVAWSNLGCVFNA-QGEIWLAIHHFEKAVSLDPNF 697 (904)
Q Consensus 627 ~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~-~~a~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~ 697 (904)
.+|... |+.++|.+ .|+++++++|+. ..+++..|..++. .|++++|..++++|+..+|..
T Consensus 207 ~lY~~vPp~~gGd~ekA~~-----------~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 207 KFYAAAPESFGGGMEKAHT-----------AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHSCTTTTCCHHHHHH-----------HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHhCCCccCCCHHHHHH-----------HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999995 99999999 677777788865 8999999999988 499999999999999998874
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.69 E-value=1.3e-07 Score=101.43 Aligned_cols=116 Identities=15% Similarity=0.077 Sum_probs=95.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhh-hcCcch
Q psy17306 593 NVYKERGQLQEALENYRHAVRL-----KPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAI-ETRPDF 663 (904)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l-~~~p~~ 663 (904)
.-+..+|++++|+..|++++++ .|++ ..++.++|.+|..+|+|++|+.+++++++ .+.+.+ ..+|+.
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~----i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME----PYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHHHHSCSSCHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH----hHHHHcCCCChHH
Confidence 3455789999999999999986 3444 56899999999999999999999999998 455544 467889
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CcC---cHHHHHHHHHHHHHhc
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSL-----DPN---FLDAYINLGNVLKEAR 712 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~a~~~la~~~~~~g 712 (904)
+..+++||.+|..+|++++|+.+|++|+++ .|+ ...+..+|+.+...++
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 344 4555667777765543
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.65 E-value=2.1e-07 Score=75.35 Aligned_cols=81 Identities=15% Similarity=-0.038 Sum_probs=72.0
Q ss_pred CcchHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHH
Q psy17306 660 RPDFAVAWSNLGCVFNAQGE---IWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDV 736 (904)
Q Consensus 660 ~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 736 (904)
+|+++.++..+|.+++..++ .++|...++++++++|+++.+++.+|.++...|++++|+.+|+++++..|.+.+...
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~ 81 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVT 81 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence 68899999999999987666 799999999999999999999999999999999999999999999999987555444
Q ss_pred HHHH
Q psy17306 737 ILER 740 (904)
Q Consensus 737 ~l~~ 740 (904)
+...
T Consensus 82 i~~~ 85 (93)
T 3bee_A 82 IIES 85 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.64 E-value=1.5e-07 Score=100.59 Aligned_cols=102 Identities=15% Similarity=0.096 Sum_probs=87.2
Q ss_pred HHcCCHHHHHHHHHHHHhh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhh-hcCcchHHH
Q psy17306 596 KERGQLQEALENYRHAVRL-----KPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAI-ETRPDFAVA 666 (904)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l-~~~p~~~~a 666 (904)
...|+|++|+..|++++++ .|++ ..++.++|.+|..+|+|++|+.+++++|+ .+.+.+ ..+|+.+..
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~----i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK----PYSKHYPVYSLNVASM 384 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHHSCSSCHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH----HHHHHcCCCChHHHHH
Confidence 3568999999999999986 3444 56889999999999999999999999998 445444 357889999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc-----CcCcHHHH
Q psy17306 667 WSNLGCVFNAQGEIWLAIHHFEKAVSL-----DPNFLDAY 701 (904)
Q Consensus 667 ~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~ 701 (904)
+++||.+|..+|++++|+..|++|+++ .|++|.+.
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999999999998 56666544
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.61 E-value=4.5e-07 Score=79.15 Aligned_cols=91 Identities=10% Similarity=-0.052 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhChhhHHHhhhcC-c-chHHHHHHHHHHHHh
Q psy17306 602 QEALENYRHAVRLKPDFIDGYINLAAALVAAG---DMEQAVQAYVTALQYNPSCYLKAIETR-P-DFAVAWSNLGCVFNA 676 (904)
Q Consensus 602 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~l~~~-p-~~~~a~~~lg~~~~~ 676 (904)
..+.+.|.+.++.+|.+.++.+++|+++.+.+ +.++++.. +...++.+ | +..+++++||..+.+
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~l-----------Le~ll~~~~p~~~rd~lY~LAv~~~k 83 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVL-----------LEELLPKGSKEEQRDYVFYLAVGNYR 83 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHH-----------HHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHH-----------HHHHHhcCCccchHHHHHHHHHHHHH
Confidence 34555555555555666666666666666655 44456663 33333333 4 345566666666666
Q ss_pred CCCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy17306 677 QGEIWLAIHHFEKAVSLDPNFLDAYIN 703 (904)
Q Consensus 677 ~g~~~~A~~~~~~al~~~p~~~~a~~~ 703 (904)
+|+|++|+.+++++|+++|++..+..-
T Consensus 84 l~~Y~~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 84 LKEYEKALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp TSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 666666666666666666666555443
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.54 E-value=5.3e-07 Score=72.91 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=37.7
Q ss_pred CcccHHHHHHHHHHHHHhCc---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy17306 72 NPLLAEAYSNLGNVYKERGQ---LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD 142 (904)
Q Consensus 72 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 142 (904)
+|+++..+..+|.+++..++ .++|...+++++..+|+++.+++.+|..++..|+|++|+..|+++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34455555555555544333 455555555555555555555555555555555555555555555555554
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.53 E-value=1.1e-06 Score=76.68 Aligned_cols=93 Identities=8% Similarity=-0.054 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc---CHHHHHHHHHHHHhcC-c-ccHHHHHHHHHHHHHhCcHHHHHHH
Q psy17306 24 YESAERHCMQLWRQETNNTGVLLLLSSIHFQCR---KLDKSAHFSTLAIKQN-P-LLAEAYSNLGNVYKERGQLQEALEN 98 (904)
Q Consensus 24 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 98 (904)
...+.+.|.+.+..+|.+.++.+.+|+++.+.+ +.++++.+++.+++.+ | ++.++++.+|..+++.|+|++|+.+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 445566666666666777777777777777766 5567777777777776 6 4567777777777777777777777
Q ss_pred HHHHHhcCCCCHHHHHHH
Q psy17306 99 YRHAVRLKPDFIDGYINL 116 (904)
Q Consensus 99 ~~~al~~~p~~~~~~~~l 116 (904)
++++++.+|++..+....
T Consensus 94 ~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHH
Confidence 777777777776654443
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.48 E-value=1.3e-06 Score=72.86 Aligned_cols=86 Identities=19% Similarity=0.105 Sum_probs=71.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc
Q psy17306 618 FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697 (904)
Q Consensus 618 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 697 (904)
++.-.+.+|..++..|+|..|+..|+++++..+ .--...+..+.++..+|.++.++|++++|+..++++++++|++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~----~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLD----EGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----TTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhh----ccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 456678999999999999999998888876321 1111245678999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy17306 698 LDAYINLGNV 707 (904)
Q Consensus 698 ~~a~~~la~~ 707 (904)
+.+..+++.+
T Consensus 80 ~~~~~n~~~~ 89 (104)
T 2v5f_A 80 QRANGNLKYF 89 (104)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhhHHHH
Confidence 9999998843
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.46 E-value=3.3e-07 Score=97.97 Aligned_cols=94 Identities=7% Similarity=-0.063 Sum_probs=81.6
Q ss_pred HcCCHHHHHHHHHHHHhhChhhHHHhh-hcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--------CcCcHHHH
Q psy17306 631 AAGDMEQAVQAYVTALQYNPSCYLKAI-ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL--------DPNFLDAY 701 (904)
Q Consensus 631 ~~g~~~~A~~~~~~al~~~~~~~~~~l-~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~ 701 (904)
..|+|++|+..++++|++. .+.+ ..+|+.+.++.+||.+|..+|+|++|+.++++++++ +|+-+..+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~----~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKM----SSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHH----TTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHh----hCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 4689999999999999843 3332 356778889999999999999999999999999998 56667789
Q ss_pred HHHHHHHHHhcchhHHHHHHHHhhccc
Q psy17306 702 INLGNVLKEARIFDRANTLFYVSSYFM 728 (904)
Q Consensus 702 ~~la~~~~~~g~~~~A~~~~~~a~~~~ 728 (904)
.+||.+|..+|++++|+.+|++|+++.
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 999999999999999999999998753
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.36 E-value=1.6e-06 Score=93.08 Aligned_cols=122 Identities=11% Similarity=-0.064 Sum_probs=94.1
Q ss_pred hhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCcH
Q psy17306 548 DLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL--------KPDFI 619 (904)
Q Consensus 548 ~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~ 619 (904)
.-+..+|++++|+..+++.+++....+ -..+|....++.++|.+|..+|+|++|+.++++++.+ +|+..
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~l---g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERL---PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCC---CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcC---CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 335578899999999999433222110 1124556789999999999999999999999999986 34455
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhh-cCcchHHHHHHHHHHHHh
Q psy17306 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIE-TRPDFAVAWSNLGCVFNA 676 (904)
Q Consensus 620 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~-~~p~~~~a~~~lg~~~~~ 676 (904)
..+++||.+|..+|++++|+.+|+++++ .+...+. .+|....++.+|+.+...
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~----i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD----IMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----HHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999998 4554433 467777777888877654
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.23 E-value=8.3e-06 Score=67.97 Aligned_cols=80 Identities=15% Similarity=0.007 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-------cCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHH
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD-------PNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDV 736 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 736 (904)
+.-.+.+|..++..|+|..|+.+|++|++.. +..+.++.+||.++.++|++++|+.++++++...|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4557899999999999999999999999973 356899999999999999999999999999999999888877
Q ss_pred HHHHHHH
Q psy17306 737 ILERCEA 743 (904)
Q Consensus 737 ~l~~~~~ 743 (904)
++.....
T Consensus 85 n~~~~~~ 91 (104)
T 2v5f_A 85 NLKYFEY 91 (104)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 7664443
No 223
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.09 E-value=0.0002 Score=78.55 Aligned_cols=165 Identities=15% Similarity=0.062 Sum_probs=132.0
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHh--CCchHHHHHHHHHHHHHcCC---------HHHHHHHHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQ---------LQEALENYRHAV 612 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~---------~~~A~~~~~~al 612 (904)
...-+.+.+.|+.++|+.+|++ .... .| +..+|..+-.++...+. .++|.+.|+++.
T Consensus 30 ~~~id~c~k~G~~~~A~~lf~~-----------M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~ 97 (501)
T 4g26_A 30 KQKLDMCSKKGDVLEALRLYDE-----------ARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI 97 (501)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHH-----------HHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHH-----------HHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH
Confidence 4555778899999999999998 5443 34 45667777666655443 688999999988
Q ss_pred hhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy17306 613 RLK-PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691 (904)
Q Consensus 613 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 691 (904)
... +-+..+|..+...|.+.|++++|.+.|+++.+. ...|+ ...|..+-..|.+.|+.++|.+.|++..
T Consensus 98 ~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~---------g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 98 VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF---------GIQPR-LRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---------TCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------CCCCc-cceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 763 224789999999999999999999977765432 23454 5788999999999999999999999998
Q ss_pred hc--CcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCCh
Q psy17306 692 SL--DPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITD 731 (904)
Q Consensus 692 ~~--~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 731 (904)
+. .| +...+..+-.++.+.|+.++|.++|++..+....+
T Consensus 168 ~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p 208 (501)
T 4g26_A 168 ESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV 208 (501)
T ss_dssp HTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB
T ss_pred hcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc
Confidence 86 34 56788999999999999999999999998866544
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.04 E-value=8.1e-05 Score=62.31 Aligned_cols=98 Identities=9% Similarity=-0.096 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhChhhHHHhhhcC-c-chHHHHHHHHHHH
Q psy17306 600 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ---AVQAYVTALQYNPSCYLKAIETR-P-DFAVAWSNLGCVF 674 (904)
Q Consensus 600 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~l~~~-p-~~~~a~~~lg~~~ 674 (904)
....+...|.+.+..++.+..+.+++|+++....+... ++. .+...+..+ | ...+.++.||..+
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~-----------lLe~l~~~~~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIV-----------LLEELLPKGSKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHH-----------HHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHH-----------HHHHHHhcCCcchHHHHHHHHHHHH
Confidence 34566777787877788889999999999999887766 777 444444444 4 5678899999999
Q ss_pred HhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy17306 675 NAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708 (904)
Q Consensus 675 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 708 (904)
+++|+|++|..+++..|+++|++..+..-...+-
T Consensus 85 yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 118 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999988776554443
No 225
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.95 E-value=0.00064 Score=74.61 Aligned_cols=152 Identities=11% Similarity=0.019 Sum_probs=102.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhhc---------CHHHHHHHHHHHHhcC-cccHHHHHHHH
Q psy17306 15 AHREYQAGDYESAERHCMQLWRQE-TNNTGVLLLLSSIHFQCR---------KLDKSAHFSTLAIKQN-PLLAEAYSNLG 83 (904)
Q Consensus 15 a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~-p~~~~~~~~la 83 (904)
-..+.+.|++++|+.+|+++.+.. +.+...+..+-.++...+ ..++|..+|+++.... +.+..+|..+.
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 355667788888888888776542 224555555555554433 3567777777776542 12466777777
Q ss_pred HHHHHhCcHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHHcCCh
Q psy17306 84 NVYKERGQLQEALENYRHAVRLK-PDFIDGYINLAAALVAAGDMEQAVQAYVTALQY--NPDLYCVRSDLGNLLKALGRL 160 (904)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~ 160 (904)
..|.+.|++++|...|++..... .-+..+|..+-..|.+.|+.++|.+.|+++.+. .| +...+..+...+.+.|+.
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~ 191 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP-EEPELAALLKVSMDTKNA 191 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCCH
Confidence 78888888888888888776653 224666777777777888888888888877654 23 345667777777777777
Q ss_pred HHHHHHH
Q psy17306 161 DEAKDLY 167 (904)
Q Consensus 161 ~~A~~~~ 167 (904)
++|..++
T Consensus 192 d~A~~ll 198 (501)
T 4g26_A 192 DKVYKTL 198 (501)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777766
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.94 E-value=0.00015 Score=60.66 Aligned_cols=93 Identities=10% Similarity=-0.044 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHH---HHHHHHHHHhcC-c-ccHHHHHHHHHHHHHhCcHHHHHH
Q psy17306 23 DYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDK---SAHFSTLAIKQN-P-LLAEAYSNLGNVYKERGQLQEALE 97 (904)
Q Consensus 23 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 97 (904)
....+...|.+.+..++.+.++.+.+|+++....+... ++.+++..+..+ | ..-..++.+|..+++.|+|++|+.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34455556666666666677777777777776665554 777777777665 4 455677777777777777777777
Q ss_pred HHHHHHhcCCCCHHHHHH
Q psy17306 98 NYRHAVRLKPDFIDGYIN 115 (904)
Q Consensus 98 ~~~~al~~~p~~~~~~~~ 115 (904)
+++.+++..|++..+...
T Consensus 96 ~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHH
Confidence 777777777777665443
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.57 E-value=0.00063 Score=57.99 Aligned_cols=118 Identities=14% Similarity=0.048 Sum_probs=86.5
Q ss_pred hCCCcHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHH
Q psy17306 614 LKPDFIDGYINLAAALVAAGDM------EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687 (904)
Q Consensus 614 ~~p~~~~a~~~lg~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 687 (904)
+.|++++.|..........|+. ++-++.|++++..-|-. + -.........|...+.. ...++.++|.+.|
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~--k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy 83 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPD--K-YGQNESFARIQVRFAEL-KAIQEPDDARDYF 83 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGG--G-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcc--c-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHH
Confidence 4566777777777776666766 55566555555544321 1 12233345566666754 5669999999999
Q ss_pred HHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHH
Q psy17306 688 EKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDID 735 (904)
Q Consensus 688 ~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 735 (904)
+.+++++...+.+|...|..-.++|+...|.+++.+++...+.+..+.
T Consensus 84 ~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 84 QMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 999999888999999999999999999999999999999988765443
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.52 E-value=0.00047 Score=60.41 Aligned_cols=132 Identities=16% Similarity=0.129 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCc---ccHH
Q psy17306 10 GLLELAHREYQAGDYESAERHCMQLWRQETNN---------TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP---LLAE 77 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~ 77 (904)
+++.....++..|.|+.|+-....++....++ ..++..+|..++..|+|.+|...|++++.... .+..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788888899999999998888876543222 34788889999999999999999999876422 2221
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy17306 78 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLL 154 (904)
Q Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 154 (904)
....++. ...+.. .... +.+.+..+.++.||..++++++|+..++.+-. ....+.+...||.+|
T Consensus 102 ~~~~~~~----~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGN----SASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp --------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred ccccccc----cCCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 1111110 000000 1111 34567889999999999999999998765422 123466677777765
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.49 E-value=0.0023 Score=54.53 Aligned_cols=109 Identities=17% Similarity=0.063 Sum_probs=89.9
Q ss_pred hCCCCHHHHHHHHHHHHhhcCH------HHHHHHHHHHHhcCcc--------cHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q psy17306 37 QETNNTGVLLLLSSIHFQCRKL------DKSAHFSTLAIKQNPL--------LAEAYSNLGNVYKERGQLQEALENYRHA 102 (904)
Q Consensus 37 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a 102 (904)
..|++++.|.......-..|+. ++-++.|++++..-|. ....|...|.. ...++.++|...|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 5789999999999888888998 8888999999986554 24456666644 5668999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhH
Q psy17306 103 VRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCV 146 (904)
Q Consensus 103 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 146 (904)
+.++...+.+|+..|..-.++|+...|.+.+.+++...|.....
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 98888888899999999999999999999999999998876543
No 230
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.47 E-value=0.00055 Score=59.97 Aligned_cols=121 Identities=15% Similarity=0.096 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHH
Q psy17306 584 LAEAYSNLGNVYKERGQLQEALENYRHAVRLK---PDF------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYL 654 (904)
Q Consensus 584 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 654 (904)
...+++.-...+...|.|+.|+-....++.+. |+. ..++..+|.+++..|+|..|...|+++|+ ..
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq-----~~ 93 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ-----QK 93 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----HH
Confidence 34566777777888999999999999988764 331 24889999999999999999999999985 33
Q ss_pred HhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHh
Q psy17306 655 KAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVS 724 (904)
Q Consensus 655 ~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 724 (904)
+.+...+.. ...++. ...+. ....+ +...+..+.++.||.++|++++|+.+++..
T Consensus 94 k~l~k~~s~---~~~~~~----~ss~p-------~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 94 KALSKTSKV---RPSTGN----SASTP-------QSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HCC----------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHhcCCCc---cccccc----cCCCc-------ccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 333222211 101110 00000 01111 335566666777777777777777666554
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.12 E-value=0.02 Score=48.68 Aligned_cols=81 Identities=15% Similarity=0.024 Sum_probs=56.8
Q ss_pred CCcHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhChhhHHHhhhcCc-chHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy17306 616 PDFIDGYINLAAALVAAGDME---QAVQAYVTALQYNPSCYLKAIETRP-DFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691 (904)
Q Consensus 616 p~~~~a~~~lg~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~l~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 691 (904)
+.++.+.+++|+++....+.+ +++. .+...+..+| ...+.++.||..++++|+|++|..+.+..|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~-----------LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVK-----------ILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHH-----------HHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHH-----------HHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345778888888888877554 4555 3334444445 456778888888888888888888888888
Q ss_pred hcCcCcHHHHHHHHHH
Q psy17306 692 SLDPNFLDAYINLGNV 707 (904)
Q Consensus 692 ~~~p~~~~a~~~la~~ 707 (904)
+++|+|..+..-...+
T Consensus 105 ~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 105 EHERNNKQVGALKSMV 120 (144)
T ss_dssp HTCCCCHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHH
Confidence 8888887765544333
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.11 E-value=0.0095 Score=49.89 Aligned_cols=79 Identities=15% Similarity=0.025 Sum_probs=50.9
Q ss_pred cHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhChhhHHHhhhcCc-chHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 618 FIDGYINLAAALVAAGDME---QAVQAYVTALQYNPSCYLKAIETRP-DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 618 ~~~a~~~lg~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~l~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
++.+.+++|+++.+..+.+ +++. .+...+..+| ...+.++.||..+.++|+|++|..+.+..|++
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~-----------LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVK-----------ILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHH-----------HHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHH-----------HHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4567777777777766543 3555 3333334445 34567777777777777777777777777777
Q ss_pred CcCcHHHHHHHHHH
Q psy17306 694 DPNFLDAYINLGNV 707 (904)
Q Consensus 694 ~p~~~~a~~~la~~ 707 (904)
.|+|..+..-...+
T Consensus 108 eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 108 ERNNKQVGALKSMV 121 (134)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 77776665544433
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.08 E-value=0.0065 Score=50.89 Aligned_cols=85 Identities=7% Similarity=-0.030 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHhCCCH---HHHHHHHHHHHhcCcC-cHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHH
Q psy17306 663 FAVAWSNLGCVFNAQGEI---WLAIHHFEKAVSLDPN-FLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVIL 738 (904)
Q Consensus 663 ~~~a~~~lg~~~~~~g~~---~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 738 (904)
.+.+.+++|+++.+..+. .+++..++..+..+|. .-+.++.||..+.++|+|++|..+.+..+...|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 468899999999998764 5799999999999994 589999999999999999999999999999999999888888
Q ss_pred HHHHHHHHH
Q psy17306 739 ERCEAKTEE 747 (904)
Q Consensus 739 ~~~~~~~~~ 747 (904)
..+..++.+
T Consensus 119 ~~Ie~ki~k 127 (134)
T 3o48_A 119 SMVEDKIQK 127 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888776653
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.89 E-value=0.021 Score=48.54 Aligned_cols=71 Identities=8% Similarity=-0.121 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHhhcC---HHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHH
Q psy17306 41 NTGVLLLLSSIHFQCRK---LDKSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111 (904)
Q Consensus 41 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 111 (904)
++++.+.+|+++....+ ..+++.+++..+..+| ..-+.++.+|..++++|+|.+|..+.+.+++..|++..
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 34444444444444332 2234444444444444 23344444444444444444444444444444444443
No 235
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.20 E-value=0.55 Score=40.71 Aligned_cols=165 Identities=12% Similarity=0.002 Sum_probs=104.7
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--h-------
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR--L------- 614 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~------- 614 (904)
..++..++-.|.|..++-.+.+ -+...+.+.-+.||....++..|+.+++..++ .
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~----------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d 100 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHK----------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVD 100 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT----------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCC
T ss_pred hhhhhhhhhcchHhHHHHHHHh----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc
Confidence 6677788889999888865544 34577788889999999999999999999993 2
Q ss_pred --------CCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhChh--hHH-Hhhhc-Ccc-----hH----------HH
Q psy17306 615 --------KPDFID-GYINLAAALVAAGDMEQAVQAYVTALQYNPS--CYL-KAIET-RPD-----FA----------VA 666 (904)
Q Consensus 615 --------~p~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~-~~l~~-~p~-----~~----------~a 666 (904)
+|.+.+ .+..+|.++.+.|+-++|+.+|.....+.+- ..+ -..+. -|. +. ..
T Consensus 101 ~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y 180 (242)
T 3kae_A 101 ARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEY 180 (242)
T ss_dssp HHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHH
T ss_pred cccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhh
Confidence 244434 5667899999999999999999888777651 000 00000 010 00 11
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH-HHHHHHHHHHHhcchhHHHHHHHHhhcccC
Q psy17306 667 WSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD-AYINLGNVLKEARIFDRANTLFYVSSYFMI 729 (904)
Q Consensus 667 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 729 (904)
+......+..... ...++-...-|.... .-.+.+.-|..+|..++...+|...+...|
T Consensus 181 ~~d~~~lHe~~s~-----~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP 239 (242)
T 3kae_A 181 VSDSIEFHESLSP-----SLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDP 239 (242)
T ss_dssp HHHHHHHHHHCCH-----HHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHHhccH-----HHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCC
Confidence 1111122222221 333444455566533 234566677778888888888877766554
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.036 Score=62.69 Aligned_cols=57 Identities=16% Similarity=0.001 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHH
Q psy17306 112 GYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC 168 (904)
Q Consensus 112 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (904)
.+..-+..+...|+++-|+++.++++...|.....|..|+.+|..+|+|+.|+-.++
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence 444555666666666666666666666666666666666666666666666665553
No 237
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.11 E-value=0.27 Score=58.05 Aligned_cols=128 Identities=13% Similarity=0.044 Sum_probs=78.5
Q ss_pred HHHHcCCHHHHHH-HHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHH
Q psy17306 17 REYQAGDYESAER-HCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 95 (904)
Q Consensus 17 ~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 95 (904)
.....+++++|.. ++. .-|+ ...+..+...+...|.+++|+...+ +| ... -......|++++|
T Consensus 608 ~~~~~~~~~~a~~~~l~----~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~-----~~---~~~---f~~~l~~~~~~~A 671 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLP----NVEG-KDSLTKIARFLEGQEYYEEALNISP-----DQ---DQK---FELALKVGQLTLA 671 (814)
T ss_dssp HHHHTTCHHHHHHHTGG----GCCC-HHHHHHHHHHHHHTTCHHHHHHHCC-----CH---HHH---HHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHh----cCCc-hHHHHHHHHHHHhCCChHHheecCC-----Cc---chh---eehhhhcCCHHHH
Confidence 4456888888876 431 1110 2223556666777888888876553 22 111 2345678999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCChhhHHHHHHHHHHHcCChHHHHH
Q psy17306 96 LENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY--------NPDLYCVRSDLGNLLKALGRLDEAKD 165 (904)
Q Consensus 96 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~ 165 (904)
.+..+. .++...|..+|..+...|+++.|+.+|.++-.. ...+.+.+..++......|++..|..
T Consensus 672 ~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~ 744 (814)
T 3mkq_A 672 RDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFN 744 (814)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHH
Confidence 887543 356788999999999999999999999886221 12233333444444455555544443
No 238
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.07 E-value=0.63 Score=40.32 Aligned_cols=121 Identities=13% Similarity=0.082 Sum_probs=91.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHH
Q psy17306 17 REYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAL 96 (904)
Q Consensus 17 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 96 (904)
..++-.+|+.++-+-.-+ .|..++....++.+++-.|.|..++-.+. +-+.+.+.+..+.||...++|..|+
T Consensus 11 Ks~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~ 82 (242)
T 3kae_A 11 KSIRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAI 82 (242)
T ss_dssp HHHHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888776543322 45556778888999999999999988765 3456778888999999999999999
Q ss_pred HHHHHHHhc-----------------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhh
Q psy17306 97 ENYRHAVRL-----------------KPDFID-GYINLAAALVAAGDMEQAVQAYVTALQYNPDLYC 145 (904)
Q Consensus 97 ~~~~~al~~-----------------~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 145 (904)
.+++..++- +|.+.+ .+..+|.++.+.|+.++|+.++......+|-.+.
T Consensus 83 ~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 83 KSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 999999942 233333 4667889999999999999999999888876543
No 239
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.04 E-value=0.53 Score=48.83 Aligned_cols=199 Identities=13% Similarity=0.008 Sum_probs=127.4
Q ss_pred hhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhh
Q psy17306 493 KYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAH 572 (904)
Q Consensus 493 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~ 572 (904)
...+..|+.++...++.+.....+......+..-|... .....+.+...+... .+..+.-++....
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak-~~k~v~~l~~~~~~~------~~~~~~~~~~~~~------- 84 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAK-AAKLVRSLVDMFLDM------DAGTGIEVQLCKD------- 84 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHH-HHHHHHHHHHHHTTS------CCCHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHhcC------CCcHHHHHHHHHH-------
Confidence 35677899999999999999999987777666655432 111122222222221 2333334444444
Q ss_pred HHHHHHHhCCch----HH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--C----cHHHHHHHHHHHHHcCCHHHHHH
Q psy17306 573 FSTLAIKQNPLL----AE--AYSNLGNVYKERGQLQEALENYRHAVRLKP--D----FIDGYINLAAALVAAGDMEQAVQ 640 (904)
Q Consensus 573 ~~~~al~~~p~~----~~--~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~----~~~a~~~lg~~~~~~g~~~~A~~ 640 (904)
+++...+. -. .-..+|..|...|+|.+|.+.+.+.++.-. + -.+.+..-..+|...+++.++..
T Consensus 85 ----~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~ 160 (394)
T 3txn_A 85 ----CIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARA 160 (394)
T ss_dssp ----HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHH
Confidence 33322111 11 234899999999999999999999887521 1 24567778889999999999999
Q ss_pred HHHHHHhhChhhHHHhhhcCcc-hHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcC-----cCcHHHHHHHHHHHHHhcc
Q psy17306 641 AYVTALQYNPSCYLKAIETRPD-FAVAWSNLGCVFN-AQGEIWLAIHHFEKAVSLD-----PNFLDAYINLGNVLKEARI 713 (904)
Q Consensus 641 ~~~~al~~~~~~~~~~l~~~p~-~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~-----p~~~~a~~~la~~~~~~g~ 713 (904)
.+.++... ..++-.+|. .+.....-|..+. ..++|..|..+|-.+++-. |....+...++.+-...++
T Consensus 161 ~l~~a~~~-----~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 161 ALTSARTT-----ANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHH-----HHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhh-----hccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 88888753 222323443 3445566788888 8999999999999997542 2223444445555555555
Q ss_pred h
Q psy17306 714 F 714 (904)
Q Consensus 714 ~ 714 (904)
.
T Consensus 236 r 236 (394)
T 3txn_A 236 S 236 (394)
T ss_dssp G
T ss_pred H
Confidence 3
No 240
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.74 E-value=0.29 Score=50.76 Aligned_cols=176 Identities=11% Similarity=0.033 Sum_probs=114.4
Q ss_pred HHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCch--HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhC
Q psy17306 539 TKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLL--AEAYSNLGNVYKE-RGQLQEALENYRHAVRLK 615 (904)
Q Consensus 539 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~--~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~ 615 (904)
...+...+|..|...|+.++-..++..... .+..-|.. +.....+-..+.. -+..+.-++.+..+++-.
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a 89 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRP--------FLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA 89 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTT--------GGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 345568999999999999999988877221 01111111 1112222222221 233444455555555432
Q ss_pred ----CCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy17306 616 ----PDFID--GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEK 689 (904)
Q Consensus 616 ----p~~~~--a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 689 (904)
-.... .-..+|.+|+..|+|.+|.+.+.+.++ .+.+ +.......+++..-..+|..+|++.++...+.+
T Consensus 90 ~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~----~~~~-~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 90 KQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLR----ELKK-LDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHTT-SSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----HHhc-cccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 11222 234899999999999999998887775 2222 122234456778888999999999999999999
Q ss_pred HHhcC------cC-cHHHHHHHHHHHH-HhcchhHHHHHHHHhhcc
Q psy17306 690 AVSLD------PN-FLDAYINLGNVLK-EARIFDRANTLFYVSSYF 727 (904)
Q Consensus 690 al~~~------p~-~~~a~~~la~~~~-~~g~~~~A~~~~~~a~~~ 727 (904)
|.... |. .+.....-|.+++ ..++|.+|...|-.+...
T Consensus 165 a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 165 ARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 97762 22 2445666788888 899999999999888643
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.11 Score=58.76 Aligned_cols=128 Identities=9% Similarity=0.019 Sum_probs=89.8
Q ss_pred HcCC-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHhhChhhHH-------HhhhcCcchHH
Q psy17306 597 ERGQ-LQEALENYRHAVRLKPDFIDGYINLAAALV--AA-GDMEQAVQAYVTALQYNPSCYL-------KAIETRPDFAV 665 (904)
Q Consensus 597 ~~g~-~~~A~~~~~~al~~~p~~~~a~~~lg~~~~--~~-g~~~~A~~~~~~al~~~~~~~~-------~~l~~~p~~~~ 665 (904)
..++ ++.|+..+++..+.+|.... ++..+.+.. .. .+--+|++.+.+.++....... ......|....
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 3445 68899999999999997643 333333322 22 2445677777666642110000 00011122344
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 666 AWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 666 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
.+..-+..+...|+++-|+++.++|+...|.....|+.|+.+|..+|+|+.|+-.++.+=
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 566668888889999999999999999999999999999999999999999998887763
No 242
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.40 E-value=0.23 Score=47.57 Aligned_cols=122 Identities=9% Similarity=0.030 Sum_probs=87.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHH
Q psy17306 15 AHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 94 (904)
Q Consensus 15 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 94 (904)
...+++.|++++|+......++.+|.++.....+..+++-.|++++|..-++.+.+++|.....-..+..+ -.
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~ 76 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VK 76 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HH
Confidence 34567899999999999999999999999999999999999999999999999999999854432211111 11
Q ss_pred HHHHHHHHHhc--C---CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q psy17306 95 ALENYRHAVRL--K---PDFID---GYINLAAALVAAGDMEQAVQAYVTALQYNPDL 143 (904)
Q Consensus 95 A~~~~~~al~~--~---p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 143 (904)
|...=.+++.- . +..+. ....-+......|+.++|...-.++++.-|..
T Consensus 77 aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 77 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 11111222221 1 22222 33444566667899999999999999887654
No 243
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.71 Score=41.29 Aligned_cols=97 Identities=11% Similarity=0.019 Sum_probs=52.5
Q ss_pred HhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17306 53 FQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA 132 (904)
Q Consensus 53 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 132 (904)
...|+++.|.+..+.. ++...|..+|......|+++-|..+|.++- + +-.+..+|...|+.+.-.+.
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D---~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH-----S---FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-----C---HHHHHHHHHHHTCHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-----C---HHHHHHHHHHhCCHHHHHHH
Confidence 5667777777666543 445667777777777777777777776642 1 22333445556665544444
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 133 YVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 133 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
-+.+....-. .....++...|++++++++|
T Consensus 83 a~iA~~~g~~-----n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 83 QNIAQTREDF-----GSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHTTCH-----HHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHCccH-----HHHHHHHHHcCCHHHHHHHH
Confidence 3333322211 12223444556666665554
No 244
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.97 E-value=0.29 Score=46.86 Aligned_cols=57 Identities=26% Similarity=0.328 Sum_probs=49.0
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChh
Q psy17306 595 YKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS 651 (904)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 651 (904)
+.+.|..++|++.....++.+|.++.....+..+++-.|+|+.|.+.++.+.+++|+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 456789999999999999999999999999999999999999999966655554443
No 245
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.87 E-value=0.96 Score=53.21 Aligned_cols=141 Identities=18% Similarity=0.083 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCc
Q psy17306 12 LELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 91 (904)
Q Consensus 12 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 91 (904)
-..+..+...|.+++|+...+ ++... .......|++++|.++.+. .++...|..+|..+.+.|+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCC
Confidence 344455566777777776542 22222 3346788999999998652 3567899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy17306 92 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRS 171 (904)
Q Consensus 92 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (904)
++.|..+|.++- + +-.+..++...|+.+......+.+... ... .....++...|++++|++++
T Consensus 697 ~~~A~~~y~~~~-----d---~~~l~~l~~~~~~~~~~~~~~~~a~~~-~~~----~~A~~~~~~~g~~~~a~~~~---- 759 (814)
T 3mkq_A 697 FKLAIEAFTNAH-----D---LESLFLLHSSFNNKEGLVTLAKDAETT-GKF----NLAFNAYWIAGDIQGAKDLL---- 759 (814)
T ss_dssp HHHHHHHHHHHT-----C---HHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH----HHHHHHHHHHTCHHHHHHHH----
T ss_pred HHHHHHHHHHcc-----C---hhhhHHHHHHcCCHHHHHHHHHHHHHc-Cch----HHHHHHHHHcCCHHHHHHHH----
Confidence 999999999862 2 223445555677777665555555442 222 12234566789999998876
Q ss_pred hhHHHHHHcCCHHHHHHHHh
Q psy17306 172 DLGNLLKALGRLDEAKNLHT 191 (904)
Q Consensus 172 ~l~~~~~~~g~~~~A~~~~~ 191 (904)
...+++++|+.+.+
T Consensus 760 ------~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 760 ------IKSQRFSEAAFLGS 773 (814)
T ss_dssp ------HHTTCHHHHHHHHH
T ss_pred ------HHcCChHHHHHHHH
Confidence 77888888888765
No 246
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.83 E-value=3.6 Score=45.74 Aligned_cols=78 Identities=13% Similarity=-0.034 Sum_probs=56.0
Q ss_pred HHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296 (904)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 296 (904)
++...+.+......++.. ...++...++.|++..|..+|.++-..........+.+|.++...|+.++|...|+++..
T Consensus 270 ~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 270 EQAKWRDDAIMRSQSTSL-IERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHTCCCHHH-HHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhccccCCChHH-HHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 334444444443333333 344445566789999999999876554445678899999999999999999999999985
No 247
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.04 E-value=1.3 Score=39.61 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcch
Q psy17306 584 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDF 663 (904)
Q Consensus 584 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~ 663 (904)
++...+.++ ...|+++.|.+..+.. ++...|..||......|+++-|..+|+++-+
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------------- 62 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------------- 62 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------------
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------------
Confidence 345555554 5679999999987765 5688999999999999999999994443321
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
+..+..+|...|+.+.-...-+.+...... .....++..+|+.++++++|.++-
T Consensus 63 ---~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~-----n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 63 ---FDKLSFLYLVTGDVNKLSKMQNIAQTREDF-----GSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp ---HHHHHHHHHHHTCHHHHHHHHHHHHHTTCH-----HHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhCCHHHHHHHHHHHHHCccH-----HHHHHHHHHcCCHHHHHHHHHHCC
Confidence 345556666777776655555555443321 222345678888999988886653
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.98 E-value=0.5 Score=49.53 Aligned_cols=118 Identities=14% Similarity=0.018 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHH-HHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKS-AHFSTLAIKQNPLLAEAYSNLGNVYK 87 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~la~~~~ 87 (904)
..+...|......|+.+.|...+.+++......+-.- . ....+-.+ ...++. ....+...++..+.
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~--~-----~~~~w~~~~r~~l~~------~~~~a~~~~~~~~l 182 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD--L-----RDFQFVEPFATALVE------DKVLAHTAKAEAEI 182 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--G-----TTSTTHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC--C-----CchhHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 3455666667778999999999999988754321100 0 00111111 111111 11335567788899
Q ss_pred HhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy17306 88 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 139 (904)
Q Consensus 88 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 139 (904)
..|++.+|+..+.+++..+|-+..++..+..++...|+..+|+..|+++.+.
T Consensus 183 ~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 183 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988653
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.83 E-value=0.46 Score=49.86 Aligned_cols=115 Identities=15% Similarity=0.014 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhChhhHHHhhhcCcchHHH
Q psy17306 588 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV-QAYVTALQYNPSCYLKAIETRPDFAVA 666 (904)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~l~~~p~~~~a 666 (904)
+...|......|+.+.|...+.+++.+....+-. ... ...|-.+. ..++ .....+
T Consensus 118 l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~-----------------~~~~~a 173 (388)
T 2ff4_A 118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALV-----------------EDKVLA 173 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHH-----------------HHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHH-----------------HHHHHH
Confidence 3344444455688888888888888875332110 000 01111111 1111 011245
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhc
Q psy17306 667 WSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSY 726 (904)
Q Consensus 667 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 726 (904)
...++..+...|++.+|+..+.+++..+|-+..++..+-.++...|+..+|+..|++...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567788889999999999999999999999999999999999999999999999988754
No 250
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.55 E-value=0.63 Score=50.04 Aligned_cols=81 Identities=19% Similarity=0.254 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH
Q psy17306 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699 (904)
Q Consensus 620 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 699 (904)
..+..||.+......+..|.. .|.+|....|++...++.||.+....|+.-+|+-+|.+++......+.
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~-----------~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~ 221 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAES-----------YYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA 221 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHH
T ss_pred HHHHHcccHHHHHHHHHHHHH-----------HHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChh
Confidence 367788999988899999999 777777889999999999999999999999999999999999888999
Q ss_pred HHHHHHHHHHHh
Q psy17306 700 AYINLGNVLKEA 711 (904)
Q Consensus 700 a~~~la~~~~~~ 711 (904)
+..|+..++.+.
T Consensus 222 a~~nL~~~f~~~ 233 (497)
T 1ya0_A 222 ASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998753
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.46 E-value=4.5 Score=43.09 Aligned_cols=204 Identities=14% Similarity=0.038 Sum_probs=112.2
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQ------ETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 78 (904)
....+..+..+..+ ..|++.+|++.+..+.+. .+....+...+..++...|+++...+.+....+.......+
T Consensus 14 s~~~~~~~~~~~~l-~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a 92 (445)
T 4b4t_P 14 SQILKEEFPKIDSL-AQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS 92 (445)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH
T ss_pred HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH
Confidence 33445556666665 358899999887655443 23356778888899999999999888777655544332222
Q ss_pred HHHHHH---HHH-HhCcHHHHHHHHHHHHhcC----CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q psy17306 79 YSNLGN---VYK-ERGQLQEALENYRHAVRLK----PD-------FIDGYINLAAALVAAGDMEQAVQAYVTALQY---- 139 (904)
Q Consensus 79 ~~~la~---~~~-~~g~~~~A~~~~~~al~~~----p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 139 (904)
...+.. -+. .....+. ......+..- .. .......|+.++...|++.+|...+.....-
T Consensus 93 i~~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~ 170 (445)
T 4b4t_P 93 IQYMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS 170 (445)
T ss_dssp HHHHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 222221 111 1222111 1112222211 11 2345678899999999999999998887532
Q ss_pred CCCh--hhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchH
Q psy17306 140 NPDL--YCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTL 217 (904)
Q Consensus 140 ~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (904)
.+.. .+.+....+++...+++..|...+ .++.
T Consensus 171 ~~~~~kve~~l~q~rl~l~~~d~~~a~~~~-----------------------~ki~----------------------- 204 (445)
T 4b4t_P 171 MEMSEKIQFILEQMELSILKGDYSQATVLS-----------------------RKIL----------------------- 204 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCHHHHHHHH-----------------------HHHH-----------------------
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHH-----------------------HHHH-----------------------
Confidence 1111 345555666666666666665544 2100
Q ss_pred HHhhHHHHHhhc--Cc-hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy17306 218 ESAHFSTLAIKQ--NP-LLAEAYSNLGNVYKERGQLQEALENYRHAVRL 263 (904)
Q Consensus 218 ~a~~~~~~~~~~--~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 263 (904)
.+.... .| -....+...|.++...++|.+|..+|..++..
T Consensus 205 ------~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 205 ------KKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp ------HHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ------HhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 011111 11 12456677899999999999999998888754
No 252
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=93.12 E-value=0.81 Score=52.99 Aligned_cols=112 Identities=8% Similarity=-0.073 Sum_probs=89.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--Cc
Q psy17306 618 FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL--DP 695 (904)
Q Consensus 618 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p 695 (904)
....++.+-..|++.|+.++|...|.+..++. .+ ...|+ ...|+.|-..|++.|+.++|.+.|++..+. .|
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~----~k--G~~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P 198 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR----QK--RKLLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSH----HH--HTTCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh----hc--CCCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 34578999999999999999999776543210 11 23444 578999999999999999999999999876 45
Q ss_pred CcHHHHHHHHHHHHHhcch-hHHHHHHHHhhcccCChhhHHHH
Q psy17306 696 NFLDAYINLGNVLKEARIF-DRANTLFYVSSYFMITDEDIDVI 737 (904)
Q Consensus 696 ~~~~a~~~la~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~~~ 737 (904)
+...|..+-.++++.|+. ++|.++|+.+.+.+..++.+...
T Consensus 199 -DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~ 240 (1134)
T 3spa_A 199 -DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240 (1134)
T ss_dssp -CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred -cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcc
Confidence 677888888899999985 78999999999988877665544
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.82 E-value=5 Score=48.91 Aligned_cols=117 Identities=13% Similarity=0.047 Sum_probs=80.7
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC--------------------
Q psy17306 47 LLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-------------------- 106 (904)
Q Consensus 47 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------------- 106 (904)
.+...+...+.++-|.++ +...|.++...+.+|.++...|++++|..+|+++...-
T Consensus 817 ~l~~~l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 445556666777665543 33455666677888889999999999988888763210
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-h----hHHHHHHHHHHHcCChHHHHHHH
Q psy17306 107 ---PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL-Y----CVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 107 ---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~----~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
...+..|..+...+.+.+.++.+++....|++..+.+ . ..|..+-..+...|+|++|-..+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 1123456667778888888999999888888765432 2 25667777788888888887666
No 254
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.67 E-value=1.2 Score=51.73 Aligned_cols=96 Identities=11% Similarity=0.039 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Q psy17306 44 VLLLLSSIHFQCRKLDKSAHFSTLAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-PDFIDGYINLAA 118 (904)
Q Consensus 44 ~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 118 (904)
.+..+...+.+.|+.++|..+|..+.+. ...+..+|..+...|.+.|+.++|...|++..... .-+..+|..+..
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 4666777778888888888887665432 12246677777778888888888888888776653 223566777777
Q ss_pred HHHHcCC-HHHHHHHHHHHHhc
Q psy17306 119 ALVAAGD-MEQAVQAYVTALQY 139 (904)
Q Consensus 119 ~~~~~g~-~~~A~~~~~~al~~ 139 (904)
++.+.|+ .++|.+.++++...
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHc
Confidence 7777776 46777777777654
No 255
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.16 E-value=0.74 Score=49.51 Aligned_cols=63 Identities=27% Similarity=0.377 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 586 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 648 (904)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 648 (904)
..+..||.+......++.|..+|.+|+.+.|++...++.||.+....|+.-+|+=+|.+++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 467889999998899999999999999999999999999999999999999999877776654
No 256
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.50 E-value=20 Score=39.77 Aligned_cols=146 Identities=16% Similarity=0.063 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH-
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY- 86 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~- 86 (904)
.+..+..|...+..|++..+..+... +..+|-.+ +.....+....+.. .-.-+...+..+|+.+..-.......
T Consensus 6 ~~~~~~~a~~a~~~~~~~~~~~l~~~-l~~~pL~~--yl~y~~l~~~l~~~--~~~ev~~Fl~~~~~~p~~~~Lr~~~l~ 80 (618)
T 1qsa_A 6 QRSRYAQIKQAWDNRQMDVVEQMMPG-LKDYPLYP--YLEYRQITDDLMNQ--PAVTVTNFVRANPTLPPARTLQSRFVN 80 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHSGG-GTTSTTHH--HHHHHHHHHTGGGC--CHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHh-hcCCCcHH--HHHHHHHHhCcccC--CHHHHHHHHHHCCCChhHHHHHHHHHH
Confidence 45678889999999999887776443 33455422 22222222222211 12244555666777766555444433
Q ss_pred --HHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHH
Q psy17306 87 --KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDE 162 (904)
Q Consensus 87 --~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 162 (904)
.+.+++..-+..+.. .|.+....+..+......|+..+|.....++-......+.....+...+...|....
T Consensus 81 ~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 81 ELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCH
T ss_pred HHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCH
Confidence 345677766665543 378888888888899999998888888877766655556666666666666565544
No 257
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.33 E-value=21 Score=37.92 Aligned_cols=65 Identities=12% Similarity=0.084 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh---hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 234 AEAYSNLGNVYKERGQLQEALENYRHAVR---LKPDFI----DGYINLAAALVAAGDMEQAVQAYVTALQYN 298 (904)
Q Consensus 234 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 298 (904)
.+.+....+++...+++.+|...+.++.. ..+..+ ..+...|..+...++|.+|-.+|..++...
T Consensus 177 ve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 177 IQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 56778889999999999999999998743 233333 356778999999999999999999998643
No 258
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.95 E-value=0.23 Score=52.89 Aligned_cols=144 Identities=9% Similarity=-0.003 Sum_probs=58.7
Q ss_pred CchhHhhcCChhHHHHHHHHHh--hhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH----------HHHHHHh
Q psy17306 546 EPDLTREGGSIPITLTFECRKL--DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALE----------NYRHAVR 613 (904)
Q Consensus 546 l~~~~~~~~~~~~A~~~~~~~l--~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~----------~~~~al~ 613 (904)
.-..+...+++++|..+-.... +....+.. -..++-.+.+|+..+.++...|+...... .+-.++.
T Consensus 142 ~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nr--rtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~r 219 (523)
T 4b4t_S 142 VQLFLWDSKELEQLVEFNRKVVIPNLLCYYNL--RSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLK 219 (523)
T ss_dssp ---------------------------------------------------------------CHHHHHHHHTHHHHHHH
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHhH--HhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHH
Confidence 3334556788888887766522 11110110 12355567889999999888887665322 2222222
Q ss_pred h-----CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHH
Q psy17306 614 L-----KPD-FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687 (904)
Q Consensus 614 ~-----~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 687 (904)
. ++. ....++.+-..|...+.++.|..+..++. .|. .-..++..+..++.+|.++..+++|.+|.+++
T Consensus 220 ta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~----~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L 293 (523)
T 4b4t_S 220 IASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPH----TDVSSSLEARYFFYLSKINAIQLDYSTANEYI 293 (523)
T ss_dssp HCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCT----TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCc----ccCCHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 2 222 35678888999999999999999666552 111 00112233567888999999999999999999
Q ss_pred HHHHhcCcCc
Q psy17306 688 EKAVSLDPNF 697 (904)
Q Consensus 688 ~~al~~~p~~ 697 (904)
..|+...|.+
T Consensus 294 ~~A~rkap~~ 303 (523)
T 4b4t_S 294 IAAIRKAPHN 303 (523)
T ss_dssp HHHTSSCSCS
T ss_pred HHHHHhCCcc
Confidence 9999987654
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.03 E-value=1.4 Score=46.90 Aligned_cols=101 Identities=18% Similarity=0.091 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCc
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKP---DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP 661 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p 661 (904)
..++..+|..|...|++++|.+.|.++..... ...+.+.....++...+++..+...+.++. ..+...+
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~--------~~~~~~~ 202 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN--------SMIEKGG 202 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--------HHHTTCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--------HhhhcCC
Confidence 34677788888888888888888888776532 235677777777777788887777444331 1112222
Q ss_pred c--h-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 662 D--F-AVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 662 ~--~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
+ . .......|.++...++|..|...|-.++.-
T Consensus 203 d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 203 DWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1 1 123344566666677777777777666554
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.92 E-value=4.5 Score=49.31 Aligned_cols=143 Identities=10% Similarity=-0.065 Sum_probs=95.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-h--------hhHH---Hhh
Q psy17306 590 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN-P--------SCYL---KAI 657 (904)
Q Consensus 590 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-~--------~~~~---~~l 657 (904)
.+...+...+.++-|.+ .+...|.++...+.+|.++...|++++|..+|+++-... . .... ...
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34445566677765544 344566777777888999999999999988887653211 0 0011 111
Q ss_pred hcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCc-CcH----HHHHHHHHHHHHhcchhHHHHHHHHhhcccCChh
Q psy17306 658 ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP-NFL----DAYINLGNVLKEARIFDRANTLFYVSSYFMITDE 732 (904)
Q Consensus 658 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~----~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 732 (904)
......+..|..+..++.+.|.++.+++.-+.|++..+ ++. ..|.++-..+...|+|++|-..+...-+.....+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~ 972 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKS 972 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHH
Confidence 12233456788888999999999999999999998743 332 2577888889999999999888866544443334
Q ss_pred hHHH
Q psy17306 733 DIDV 736 (904)
Q Consensus 733 ~~~~ 736 (904)
.+..
T Consensus 973 cLr~ 976 (1139)
T 4fhn_B 973 CLLD 976 (1139)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.68 E-value=2 Score=45.58 Aligned_cols=100 Identities=8% Similarity=-0.052 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC--CCCH----H
Q psy17306 41 NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQN---PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--PDFI----D 111 (904)
Q Consensus 41 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~----~ 111 (904)
...++..+|..|+..|+++.|.+.|.++.... ......+.....++...+++..+...+.++.... ..++ .
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 45578889999999999999999999887642 2346778888888889999999999999886542 1122 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy17306 112 GYINLAAALVAAGDMEQAVQAYVTALQYN 140 (904)
Q Consensus 112 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 140 (904)
.....|.+++..++|..|-..|-.++...
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 34455677778899999999888876553
No 262
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.36 E-value=1.4 Score=46.84 Aligned_cols=125 Identities=10% Similarity=0.039 Sum_probs=59.7
Q ss_pred HHHHcCCHHHHHHHHHHHHh-----------hCCCCHHHHHHHHHHHHhhcCHHHHH----------HHHHHHHh-----
Q psy17306 17 REYQAGDYESAERHCMQLWR-----------QETNNTGVLLLLSSIHFQCRKLDKSA----------HFSTLAIK----- 70 (904)
Q Consensus 17 ~~~~~g~~~~A~~~~~~~l~-----------~~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~----- 70 (904)
.++..+++++|..+...++. .++-.+.+|+..+.++-..|+..... ..+-.++.
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 35678899999887765541 13335667777777777777665432 12222222
Q ss_pred cCc-ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy17306 71 QNP-LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF-------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPD 142 (904)
Q Consensus 71 ~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 142 (904)
.++ ..+..+..+-+.|...+.|++|.....++. .|.. ...++.+|.++...++|.+|.+++..|+...|.
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 222 246678888999999999999999999984 3432 345778899999999999999999999998776
Q ss_pred h
Q psy17306 143 L 143 (904)
Q Consensus 143 ~ 143 (904)
+
T Consensus 303 ~ 303 (523)
T 4b4t_S 303 N 303 (523)
T ss_dssp S
T ss_pred c
Confidence 5
No 263
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.01 E-value=22 Score=35.29 Aligned_cols=126 Identities=9% Similarity=-0.071 Sum_probs=69.9
Q ss_pred hcCChhHHHHHHHHHhhhhhhHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCcHHHHHH
Q psy17306 552 EGGSIPITLTFECRKLDKSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-----KPDFIDGYIN 624 (904)
Q Consensus 552 ~~~~~~~A~~~~~~~l~~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~ 624 (904)
..|+|=+|.+.++....+ .+... .+..+.++.-+..+.+.|++..|.+...-.++. .|-+.....+
T Consensus 25 ~~G~yYEAhQ~~Rtl~~R-------y~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~r 97 (312)
T 2wpv_A 25 KAGDYYEAHQTLRTIANR-------YVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVAR 97 (312)
T ss_dssp HHTCHHHHHHHHHHHHHH-------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHH
T ss_pred hccChHHHHHHHHHHHHH-------HHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 456666666666652111 11111 123345555666666677777666654444433 2334455556
Q ss_pred HHHHHHHcCCHH-HHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHH
Q psy17306 625 LAAALVAAGDME-QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFE 688 (904)
Q Consensus 625 lg~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 688 (904)
+..++.....-+ .=..+..++++ +-.+.-...-.++..+..+|..|...|++.+|..+|-
T Consensus 98 l~~l~~~~p~~~~~r~~fi~~ai~----WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 98 LVRLIAELDPSEPNLKDVITGMNN----WSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHTTCCTTCTTHHHHHHHHHH----HHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCCCCchHHHHHHHHHH----HHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 666655433211 11233334443 3322222234678999999999999999999999886
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.15 E-value=51 Score=32.94 Aligned_cols=122 Identities=10% Similarity=0.064 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCH---HHHHHHHHHHHhhC------CCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc-----CcccHH
Q psy17306 12 LELAHREYQAGDY---ESAERHCMQLWRQE------TNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ-----NPLLAE 77 (904)
Q Consensus 12 ~~~a~~~~~~g~~---~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~ 77 (904)
+.+-..-+..|+| =+|-+.++.+.... ....++++.-+..+++.|++.-|.++..-.++. -|-+..
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~ 95 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGA 95 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH
Confidence 3344445566666 55555555443211 112234444455555666665555444333321 111233
Q ss_pred HHHHHHHHHHHhCc--------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17306 78 AYSNLGNVYKERGQ--------LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 133 (904)
Q Consensus 78 ~~~~la~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 133 (904)
..-.+..++..... ..+|+.+-.+.-...-.++..+..+|..|+.-+++.+|..+|
T Consensus 96 ~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 96 SRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 33444444433322 122333322211112345778888888888888888888887
No 265
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=70.82 E-value=0.0001 Score=75.94 Aligned_cols=61 Identities=23% Similarity=0.337 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 232 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 297 (904)
Q Consensus 232 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 297 (904)
+.+.+|..+|.++...++..+|++.|-++ +++..+.....+-.+.|.+++-+.++.-+-+.
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~ 112 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 112 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 34677888888888888888888777553 33334445555556777777777776665544
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.96 E-value=47 Score=30.22 Aligned_cols=73 Identities=15% Similarity=0.201 Sum_probs=58.8
Q ss_pred hcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCCh
Q psy17306 658 ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL--DPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITD 731 (904)
Q Consensus 658 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 731 (904)
..+|.....|...+..+ ..++..++...|.-.... .-..+..|...|..+...|++.+|.++|+..+...-.+
T Consensus 74 kND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45777778888888765 344467888888877665 56678899999999999999999999999999877554
No 267
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=68.95 E-value=19 Score=27.51 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcC
Q psy17306 619 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETR 660 (904)
Q Consensus 619 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~ 660 (904)
+..+...+..+...|+|++||++.+++.. .+..+.++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~----yL~eAmklt 52 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT----YLSEAMKLT 52 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHHHTTC
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH----HHHHHHHhh
Confidence 34556778888888899999886666655 444554443
No 268
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=66.30 E-value=9.3 Score=28.10 Aligned_cols=35 Identities=11% Similarity=0.092 Sum_probs=17.3
Q ss_pred HHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHH
Q psy17306 704 LGNVLKEARIFDRANTLFYVSSYFMITDEDIDVIL 738 (904)
Q Consensus 704 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 738 (904)
+|..+...|++++|..+|-+|+...+++.++...+
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~ 57 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 57 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444555555555555555555555444444433
No 269
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.18 E-value=66 Score=38.01 Aligned_cols=99 Identities=9% Similarity=-0.083 Sum_probs=63.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-hh--------h---HHHhhh
Q psy17306 591 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN-PS--------C---YLKAIE 658 (904)
Q Consensus 591 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~--------~---~~~~l~ 658 (904)
+...+...|.++-|. ..+...|.++..-+-+|.++...|++++|..+|+++-.-- .. . +....+
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 455566677776543 3556777888778889999999999999999777653211 00 0 000111
Q ss_pred cCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 659 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
........|.....++...+-++-++...+.|++.
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 12223345667777777777777777777777764
No 270
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.84 E-value=57 Score=28.59 Aligned_cols=68 Identities=16% Similarity=0.278 Sum_probs=53.1
Q ss_pred hcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCCh
Q psy17306 658 ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL--DPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITD 731 (904)
Q Consensus 658 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 731 (904)
..+|.....|...+... ++ +...|.-.... .-..+..|...|..+...|++.+|.++|+.++.....+
T Consensus 60 knD~RyLklWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp TTCHHHHHHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 45677777888887763 33 55666666554 56678899999999999999999999999999987655
No 271
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=59.11 E-value=72 Score=37.71 Aligned_cols=88 Identities=13% Similarity=0.058 Sum_probs=62.7
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC---------------------
Q psy17306 48 LSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--------------------- 106 (904)
Q Consensus 48 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------- 106 (904)
+...+...|.++-|.+ .+...|.++..-+.+|.++...|++++|..+|+++-.--
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 4555566677665433 445566777777889999999999999999998764210
Q ss_pred CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy17306 107 PD--FIDGYINLAAALVAAGDMEQAVQAYVTALQY 139 (904)
Q Consensus 107 p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 139 (904)
+. ....|.....++...+-++-++...+.|++.
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 01 1225667788888889999999999999865
No 272
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=58.05 E-value=48 Score=28.92 Aligned_cols=60 Identities=13% Similarity=0.180 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--H----H--HH-HHHHHHHHhhcCHHHHHHHHHHHHh
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWRQETNN--T----G--VL-LLLSSIHFQCRKLDKSAHFSTLAIK 70 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~----~--~~-~~la~~~~~~g~~~~A~~~~~~al~ 70 (904)
-+..|..++..|+|=+|-+.++.+....+.. . . +. ...|..+.+.|+..-|..++.+++.
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4677888888899999999999888766543 1 1 12 2223344556777777777776655
No 273
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=56.24 E-value=47 Score=27.94 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=34.5
Q ss_pred HHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc
Q psy17306 51 IHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL 105 (904)
Q Consensus 51 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 105 (904)
....+|+-++-.+.+...+.-++-++..+..+|.+|.+.|+..+|.+.+.+|-+.
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3445666666666666655555555667777777777777777777777766654
No 274
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=51.16 E-value=18 Score=28.15 Aligned_cols=36 Identities=11% Similarity=0.096 Sum_probs=18.9
Q ss_pred HHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHH
Q psy17306 703 NLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVIL 738 (904)
Q Consensus 703 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 738 (904)
.+|..+...|+++.|+.+|-+|+...+++.++...+
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~ 60 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 60 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345555555555555555555555555555444443
No 275
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=49.39 E-value=40 Score=24.75 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWRQETNNT 42 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 42 (904)
-+.+|+.+...|++++|..+|-+|+...|.-.
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 35677777777777777777777777766533
No 276
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=49.10 E-value=36 Score=25.86 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=22.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCc
Q psy17306 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP 661 (904)
Q Consensus 626 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p 661 (904)
|.-.-..|++++|+.+|.++++ .|..++...|
T Consensus 26 Ave~D~~g~y~eAl~lY~~aie----~l~~alk~e~ 57 (83)
T 2w2u_A 26 AVKADKEGNAEEAITNYKKAIE----VLAQLVSLYR 57 (83)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH----HHHHHHHHST
T ss_pred HHHHHHhccHHHHHHHHHHHHH----HHHHHHHHCC
Confidence 3334567888888888888887 6666665544
No 277
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=48.47 E-value=27 Score=26.52 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWR 36 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~ 36 (904)
-+.|..++..|...-..|+|++|+.+|..+++
T Consensus 16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 16 EEMARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44566777788888888888888887777653
No 278
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=48.11 E-value=0.0042 Score=64.34 Aligned_cols=221 Identities=17% Similarity=0.118 Sum_probs=127.5
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy17306 41 NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 120 (904)
Q Consensus 41 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 120 (904)
.+++|..+|..++..++..+|++.|-++ .+|. .+.....+..+.|+|++=+.+++-+-+. -..+.+=..|..+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps---~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS---SYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCC---SSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChH---HHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHHH
Confidence 4567777777777777777777666543 2333 3444455555667777766666655443 22333444556666
Q ss_pred HHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHH---HHHhhHHHHHHcCCHHHHHHHHhhcCCCc
Q psy17306 121 VAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC---VRSDLGNLLKALGRLDEAKNLHTENIKPV 197 (904)
Q Consensus 121 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 197 (904)
.+.++..+-.+.+ ..|+.+ -....|.-++..|.|+.|.-+|. .+..|+.++..+|+|..|++..+++-.+.
T Consensus 127 Ak~~rL~elEefl-----~~~N~A-~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 127 AKTNRLAELEEFI-----NGPNNA-HIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp HTSCSSSTTTSTT-----SCCSSS-CTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred HhhCcHHHHHHHH-----cCCCcc-cHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 6666644322221 123332 23466777778888888777773 45567778888888888888777665543
Q ss_pred chhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy17306 198 TMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277 (904)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 277 (904)
.-...........+.. ...+-.+. +-..++ -+-.+...|...|-|++-+..++.++.+..-+...+..||.+
T Consensus 201 tWKeV~~ACvd~~Efr---LAqicGLn--iIvhad---eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaIL 272 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFR---LAQMCGLH--IVVHAD---ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 272 (624)
T ss_dssp SHHHHTHHHHHSCTTT---TTTHHHHH--HHCCSS---CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHH---HHHHhcch--hcccHH---HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3222211111111000 00000000 011111 112234456678999999999999999888889999999988
Q ss_pred HHHc
Q psy17306 278 LVAA 281 (904)
Q Consensus 278 ~~~~ 281 (904)
|.+-
T Consensus 273 YsKY 276 (624)
T 3lvg_A 273 YSKF 276 (624)
T ss_dssp HHSS
T ss_pred HHhc
Confidence 8754
No 279
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=46.52 E-value=41 Score=25.50 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=22.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcc
Q psy17306 627 AALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD 662 (904)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~ 662 (904)
.-.-..|++++|+.+|..+++ .|..++...|+
T Consensus 19 ve~D~~g~y~eAl~lY~~aie----~l~~~lk~e~d 50 (83)
T 2v6y_A 19 VKADKEGKVEDAITYYKKAIE----VLSQIIVLYPE 50 (83)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH----HHHHHHHHCTT
T ss_pred HHHHHhccHHHHHHHHHHHHH----HHHHHHHHCCC
Confidence 333567888888888888887 66666665443
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=46.49 E-value=1.2e+02 Score=26.09 Aligned_cols=68 Identities=12% Similarity=-0.005 Sum_probs=52.8
Q ss_pred hcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCCh
Q psy17306 658 ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL--DPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITD 731 (904)
Q Consensus 658 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 731 (904)
..+|.....|...+... .++...|.-.... .-..+..|...|..+...|++.+|.++|+..++..-.+
T Consensus 65 knD~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 65 HNDPRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp TTCHHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45666677777776643 3377777777665 45678889999999999999999999999999876554
No 281
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=45.59 E-value=2.6e+02 Score=31.14 Aligned_cols=221 Identities=9% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH------HHh
Q psy17306 16 HREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY------KER 89 (904)
Q Consensus 16 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~------~~~ 89 (904)
..++-.|+|+.|+.++-+. +..--..+|.++...|-... -+..+..+++ ....+++.+. +..
T Consensus 302 ~vLlLtgqFE~AI~~L~~~------~~vdAVH~AIaL~~~gLL~~----~~~lls~~~~--~~~lN~arLI~~Yt~~F~~ 369 (661)
T 2qx5_A 302 QTLLLSGLYGLAIDYTYTF------SEMDAVHLAIGLASLKLFKI----DSSTRLTKKP--KRDIRFANILANYTKSFRY 369 (661)
T ss_dssp HHHHHTTCHHHHHHHHHTT------CHHHHHHHHHHHHHTTC-----------------------CHHHHHHHHHTTTTT
T ss_pred HHHHHHhhHHHHHHHHHhc------CchhHHHHHHHHHHcCCccC----CCcccccCCC--cccccHHHHHHHHHHHhhc
Q ss_pred CcHHHHHHHHHHHHhcC-CCCHHHHHH-HHHHHHHcCCHH--------------HHHHHHHHHHhcCC---ChhhHHHHH
Q psy17306 90 GQLQEALENYRHAVRLK-PDFIDGYIN-LAAALVAAGDME--------------QAVQAYVTALQYNP---DLYCVRSDL 150 (904)
Q Consensus 90 g~~~~A~~~~~~al~~~-p~~~~~~~~-la~~~~~~g~~~--------------~A~~~~~~al~~~p---~~~~~~~~l 150 (904)
.+..+|+++|--+-..+ +........ +.......++++ ..++-+...+.++. -...+....
T Consensus 370 td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~a 449 (661)
T 2qx5_A 370 SDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQA 449 (661)
T ss_dssp TCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHHHH
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcC
Q psy17306 151 GNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQN 230 (904)
Q Consensus 151 a~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 230 (904)
|.-....|++++|+.+| .-.|+++.++.+..+.+. .++...
T Consensus 450 A~~ae~~G~~~dAi~LY----------~La~~~d~vl~lln~~Ls-----------------------------~~l~~~ 490 (661)
T 2qx5_A 450 ARRADEDGRIYDSILLY----------QLAEEYDIVITLVNSLLS-----------------------------DTLSAS 490 (661)
T ss_dssp HHHHHHTTCHHHHHHHH----------HHTTCHHHHHHHHHHHHH-----------------------------HHHHHS
T ss_pred HHHHHHCCCHHHHHHHH----------HHhcCHHHHHHHHHHHHH-----------------------------HHhccc
Q ss_pred c--------------hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHH
Q psy17306 231 P--------------LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL--VAAGDMEQAVQAYVT 293 (904)
Q Consensus 231 ~--------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~--~~~g~~~~A~~~~~~ 293 (904)
+ +-......+...|...+.+..-+..-.+. ....+..+..++ ...|+++.|++.+++
T Consensus 491 ~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~------t~~lLl~l~~f~~~~~~g~~~~AL~~i~~ 563 (661)
T 2qx5_A 491 DLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHVKNKE------ICMLLLNISSIRELYFNKQWQETLSQMEL 563 (661)
T ss_dssp CTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCHHHHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccccccccccHHHHHHHHHHHHhcCchhhhhccHHHHH------HHHHHHHHHHHHHHHHcCCHHHHHHHHHh
No 282
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=43.92 E-value=34 Score=26.19 Aligned_cols=29 Identities=28% Similarity=0.078 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 692 (904)
+..+...+..+...|+|++||++.++|..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 55667788888899999999888887764
No 283
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=43.32 E-value=79 Score=23.87 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLW 35 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l 35 (904)
++.++..|..+++.|+|.+|..+|+++.
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~ 80 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKAL 80 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 4555666666666666666666666654
No 284
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=40.45 E-value=66 Score=25.08 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q psy17306 12 LELAHREYQAGDYESAERHCMQLWRQETNNT------GVLLLLSSIHFQCRKLDKSAHFSTLAIK 70 (904)
Q Consensus 12 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~ 70 (904)
+..|..++..|+|=+|-+.++.+-...|... -+....|......|+. |...+.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 4567777778888888888887776664421 1122222333345555 6666666654
No 285
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=40.36 E-value=14 Score=25.10 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=18.5
Q ss_pred HHhhhhccCCCCHHHHHHHHHHhhc
Q psy17306 879 EQKKIDESEPLTEEELAEKEELLTQ 903 (904)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (904)
+..+...++.||++|.+|..+|=++
T Consensus 12 eLakK~K~~gLT~eEk~EQ~~LR~e 36 (54)
T 2jvd_A 12 ELAAKAKAGVITEEEKAEQQKLRQE 36 (54)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHH
Confidence 3444556899999999998887543
No 286
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=39.02 E-value=14 Score=25.68 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=18.6
Q ss_pred HHhhhhccCCCCHHHHHHHHHHhhc
Q psy17306 879 EQKKIDESEPLTEEELAEKEELLTQ 903 (904)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (904)
|..+...++.||+||.+|..+|=++
T Consensus 12 eLakK~K~~gLT~eEk~EQ~~LR~e 36 (60)
T 3bhp_A 12 ELAAKAKAGVITEEEKAEQQKLRQE 36 (60)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHH
Confidence 3444555899999999998887543
No 287
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=38.59 E-value=1.8e+02 Score=24.58 Aligned_cols=124 Identities=16% Similarity=0.171 Sum_probs=73.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH------------------HHHHH--HhhcCHHHHHHHHHHHHhc
Q psy17306 12 LELAHREYQAGDYESAERHCMQLWRQETNNTGVLLL------------------LSSIH--FQCRKLDKSAHFSTLAIKQ 71 (904)
Q Consensus 12 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~------------------la~~~--~~~g~~~~A~~~~~~al~~ 71 (904)
+..|....-.|..++..++..+.....|-....|+. +|.++ ...|+...-+.++-+.-.
T Consensus 11 LmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~- 89 (172)
T 1wy6_A 11 LMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNT- 89 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcc-
Confidence 456778888999999999999988776653333321 11110 123344444444433211
Q ss_pred CcccHHHHHHHH-HHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy17306 72 NPLLAEAYSNLG-NVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 140 (904)
Q Consensus 72 ~p~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 140 (904)
. .+ +..+| ..+..+|+-++--..+...+.-.+-++..+..+|.+|.+.|+..+|-+.+.+|-+..
T Consensus 90 --~-se-~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 90 --L-NE-HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp --C-CH-HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred --h-HH-HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 1 11 12222 234556666666666666555556667888888888888888888888888776643
No 288
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=38.08 E-value=1.3e+02 Score=22.88 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=25.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcch
Q psy17306 624 NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDF 663 (904)
Q Consensus 624 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~ 663 (904)
..|.-.-..|++++|+.+|..+++ .|..++...|+.
T Consensus 21 ~~Ave~D~~g~y~eAl~lY~~Aie----~ll~alk~e~d~ 56 (86)
T 4a5x_A 21 KRAVELDSESRYPQALVCYQEGID----LLLQVLKGTKDN 56 (86)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HHHHHHHTCCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHhhCCCH
Confidence 334444677889999998888887 677777766554
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=38.03 E-value=1.1e+02 Score=28.33 Aligned_cols=68 Identities=9% Similarity=0.098 Sum_probs=52.3
Q ss_pred hcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCCh
Q psy17306 658 ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL--DPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITD 731 (904)
Q Consensus 658 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 731 (904)
..+|.....|..++.. . +.+...|.-.... .-..+..|...|..+...|++.+|.++|+..+...-.+
T Consensus 114 knD~RyLklWl~Ya~~---~---~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 114 KDDVRYLRIWMQYVNY---I---DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp TTCHHHHHHHHHHHTT---C---SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred cCCHHHHHHHHHHHHc---c---CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4567777777777763 1 3555666666554 56678899999999999999999999999999876554
No 290
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=37.23 E-value=57 Score=24.74 Aligned_cols=32 Identities=16% Similarity=0.075 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWR 36 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~ 36 (904)
-+.+..++..|...-..|+|++|+.+|..+++
T Consensus 8 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 8 EDMARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34566677778777788888888877776643
No 291
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=36.72 E-value=32 Score=25.67 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWR 36 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~ 36 (904)
.+.+|+.+...|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 46788888888999998888888765
No 292
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=36.64 E-value=1.5e+02 Score=23.01 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=24.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcch
Q psy17306 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDF 663 (904)
Q Consensus 626 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~ 663 (904)
|.-.-..|+|++|+.+|..+++ .|..++...|+.
T Consensus 22 Ave~D~~g~y~eAl~~Y~~Aie----~l~~alk~e~~~ 55 (93)
T 1wfd_A 22 AVELDAESRYQQALVCYQEGID----MLLQVLKGTKES 55 (93)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH----HHHHHHHTCCCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH----HHHHHHHHCCCH
Confidence 3444567889999998888888 777777766554
No 293
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=36.11 E-value=64 Score=24.52 Aligned_cols=33 Identities=24% Similarity=0.147 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWR 36 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~ 36 (904)
+-+.+..++..|...-..|+|++|+.+|..++.
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445566777778777788888888887777653
No 294
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=35.24 E-value=3.4e+02 Score=26.76 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=21.0
Q ss_pred ChhhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 142 DLYCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 142 ~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
.++..+..+|..+...|++.+|..+|
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 46778888888888888888887766
No 295
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=35.18 E-value=74 Score=29.17 Aligned_cols=51 Identities=16% Similarity=0.018 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-----HHHHHHHHHHHcCCH
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID-----GYINLAAALVAAGDM 635 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-----a~~~lg~~~~~~g~~ 635 (904)
....+.+|.++...++|.+|.+.+..|+...|.... ++..+.-+-+-+|+.
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~i 69 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHM 69 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCC
Confidence 567899999999999999999999999999887543 233333333445654
No 296
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=35.15 E-value=63 Score=24.67 Aligned_cols=30 Identities=13% Similarity=-0.051 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWR 36 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~ 36 (904)
.+..++..|...-..|+|++|+.+|..+++
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355567777777777777777777776643
No 297
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=35.03 E-value=3.4e+02 Score=26.75 Aligned_cols=33 Identities=3% Similarity=-0.053 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQE 38 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~ 38 (904)
..+.. .+..|..++..|++++|+..|+.++..-
T Consensus 112 ~~L~~-~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i 144 (325)
T 3mv2_A 112 DVVNE-KMNEGYKNFKLNKPDIAIECFREAIYRI 144 (325)
T ss_dssp HHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 34443 6788999999999999999999997653
No 298
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=34.89 E-value=2.6e+02 Score=25.37 Aligned_cols=78 Identities=10% Similarity=0.033 Sum_probs=56.6
Q ss_pred HHHHHHHhc---------CcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17306 63 HFSTLAIKQ---------NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL--KPDFIDGYINLAAALVAAGDMEQAVQ 131 (904)
Q Consensus 63 ~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~ 131 (904)
.++++++.. ||.....|...+..+ ..++..++...|.-+... .-..+..|...|..+...|++.+|..
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 466666652 455566777766655 234466788888777654 45667788888999999999999999
Q ss_pred HHHHHHhcCC
Q psy17306 132 AYVTALQYNP 141 (904)
Q Consensus 132 ~~~~al~~~p 141 (904)
+|+.+++...
T Consensus 137 Vy~~GI~~~A 146 (202)
T 3esl_A 137 LLELGAENNC 146 (202)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHcCC
Confidence 9999998653
No 299
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=34.76 E-value=5.7 Score=21.06 Aligned_cols=11 Identities=36% Similarity=0.492 Sum_probs=5.7
Q ss_pred CCCCCCCcccc
Q psy17306 826 RPPKQPIVQDF 836 (904)
Q Consensus 826 ~~~~~~~~~~~ 836 (904)
||+|+|||+|.
T Consensus 2 kpskpfnvddv 12 (27)
T 2hzs_I 2 KPSKPFNVDDV 12 (27)
T ss_dssp ----CCCHHHH
T ss_pred CCCCCcChhhe
Confidence 57888998874
No 300
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=34.32 E-value=66 Score=25.00 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLW 35 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l 35 (904)
-+.+..++..|...-..|+|++|+.+|..++
T Consensus 12 l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 12 STAAVAVLKRAVELDAESRYQQALVCYQEGI 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4456667777777777888888777777664
No 301
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=34.24 E-value=1.9e+02 Score=24.89 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=46.5
Q ss_pred CcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy17306 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL--KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD 142 (904)
Q Consensus 72 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 142 (904)
||.....|...+... +++...|.-+... .-..+..|...|..+...|++.+|.++|+.+++....
T Consensus 67 D~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 67 DPRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp CHHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CHHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 344445555555442 3377777777654 4556778888999999999999999999999986543
No 302
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=33.09 E-value=1e+02 Score=32.50 Aligned_cols=87 Identities=14% Similarity=0.037 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHhhCCC--------C-----HH---HHHHHHHHHHhhcCHHHHHHHHHHHHhcCc----------ccH
Q psy17306 23 DYESAERHCMQLWRQETN--------N-----TG---VLLLLSSIHFQCRKLDKSAHFSTLAIKQNP----------LLA 76 (904)
Q Consensus 23 ~~~~A~~~~~~~l~~~p~--------~-----~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p----------~~~ 76 (904)
..++|...+.++...--+ + .. ....+-.+|++.|+..-+..+++..-...+ ...
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 456677777777654111 1 11 223345678899998888888865433221 134
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhc-CCCC
Q psy17306 77 EAYSNLGNVYKERGQLQEALENYRHAVRL-KPDF 109 (904)
Q Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 109 (904)
..++.+|.++...++|.+|..++..|+.. .|..
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 56778888888888888888888888877 5543
No 303
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=32.56 E-value=66 Score=36.04 Aligned_cols=50 Identities=10% Similarity=0.011 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCc
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 91 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 91 (904)
.+.....|...+..|+|.-|.++.+.++..+|++..+...++.+|.++|.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 45556666666777777777777777777777777777777777776664
No 304
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=32.26 E-value=1.2e+02 Score=24.74 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=15.8
Q ss_pred HHcCCHHHHHHHHHHHHhhChhhHHHhhhcC
Q psy17306 630 VAAGDMEQAVQAYVTALQYNPSCYLKAIETR 660 (904)
Q Consensus 630 ~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~ 660 (904)
-..|+|++|+.+|..+++ .|..++...
T Consensus 29 D~ag~y~eAl~lY~~Aie----~l~~alk~e 55 (117)
T 2cpt_A 29 DKAGNYEEALQLYQHAVQ----YFLHVVKYE 55 (117)
T ss_dssp HHHTCHHHHHHHHHHHHH----HHHHHHHTS
T ss_pred HHccCHHHHHHHHHHHHH----HHHHHHHhc
Confidence 455777777776665555 444444433
No 305
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=31.18 E-value=1.1e+02 Score=27.98 Aligned_cols=32 Identities=3% Similarity=0.040 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc
Q psy17306 43 GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL 74 (904)
Q Consensus 43 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 74 (904)
...+.+|.+++..++|.+|.+.+..|+...|.
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 34555666666666666666666666665543
No 306
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=30.92 E-value=6.9e+02 Score=29.08 Aligned_cols=155 Identities=10% Similarity=-0.078 Sum_probs=84.1
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH---
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID--- 620 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 620 (904)
..+|.++...|+-+....++.. +.+...+...-...+|..+...|+.+.+....+.... .++ +.
T Consensus 494 lALGli~vGTgn~~ai~~LL~~-----------~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~-~~d-p~vRy 560 (963)
T 4ady_A 494 LGMGLCMLGTGKPEAIHDMFTY-----------SQETQHGNITRGLAVGLALINYGRQELADDLITKMLA-SDE-SLLRY 560 (963)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHH-----------HHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHH-CSC-HHHHH
T ss_pred HHHhhhhcccCCHHHHHHHHHH-----------HhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHh-CCC-HHHHH
Confidence 6678888888876555555554 4544444443334455555566777666655555443 322 32
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchH--HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc
Q psy17306 621 -GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFA--VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697 (904)
Q Consensus 621 -a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 697 (904)
+-..+|..|...|+.......+..+.+. ..++. .+...+|. ...|+.+.+...+....+ -.+
T Consensus 561 gaa~alglAyaGTGn~~aIq~LL~~~~~d-----------~~d~VRraAViaLGl--I~~g~~e~v~rlv~~L~~--~~d 625 (963)
T 4ady_A 561 GGAFTIALAYAGTGNNSAVKRLLHVAVSD-----------SNDDVRRAAVIALGF--VLLRDYTTVPRIVQLLSK--SHN 625 (963)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHC-----------SCHHHHHHHHHHHHH--HTSSSCSSHHHHTTTGGG--CSC
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhccC-----------CcHHHHHHHHHHHHh--hccCCHHHHHHHHHHHHh--cCC
Confidence 3456777888899864444444333321 11122 24444444 445554444444432222 345
Q ss_pred HHHHHHHHHHHHHh--cc-hhHHHHHHHHhhc
Q psy17306 698 LDAYINLGNVLKEA--RI-FDRANTLFYVSSY 726 (904)
Q Consensus 698 ~~a~~~la~~~~~~--g~-~~~A~~~~~~a~~ 726 (904)
+.+.+..+.++-.. |+ ..+|+..+.+...
T Consensus 626 ~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 626 AHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 77777766666544 22 3678888877754
No 307
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=30.44 E-value=2.4e+02 Score=24.63 Aligned_cols=68 Identities=16% Similarity=0.244 Sum_probs=51.6
Q ss_pred hcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 228 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR--LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 228 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
..+|....+|..++... ++ +..+|..+.. +....+..|...|..+...|++.+|.++|+..++.....
T Consensus 60 knD~RyLklWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp TTCHHHHHHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 45666677777777653 33 5556666554 456778899999999999999999999999999876544
No 308
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=30.01 E-value=66 Score=25.07 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17306 10 GLLELAHREYQAGDYESAERHCMQLWRQETN 40 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 40 (904)
.-+.+|..+...|+++.|+.+|-+++...|.
T Consensus 22 ~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 22 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3456777888888888888877777766655
No 309
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=29.85 E-value=35 Score=20.93 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=12.3
Q ss_pred hhHhHHHHHHHHHHhhc
Q psy17306 842 RLFEILDQEIYYFRKTV 858 (904)
Q Consensus 842 ~~~~~~~~~~~~~~~~~ 858 (904)
-|..-+|+|++..+|+|
T Consensus 31 dliaylekeianlrkki 47 (49)
T 3he5_A 31 DLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45666788888888775
No 310
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=29.21 E-value=2e+02 Score=28.60 Aligned_cols=91 Identities=15% Similarity=0.206 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHhCCCHHH--HHHHHHHHHhc-----CcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCC---h
Q psy17306 662 DFAVAWSNLGCVFNAQGEIWL--AIHHFEKAVSL-----DPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMIT---D 731 (904)
Q Consensus 662 ~~~~a~~~lg~~~~~~g~~~~--A~~~~~~al~~-----~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---~ 731 (904)
..|-++-+||.+-...--... ++..|.+|+.. ...+...+..+|..+.+.+++.+|+..+-.+.+.... .
T Consensus 253 rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~ 332 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYS 332 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred hCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCC
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy17306 732 EDIDVILERCEAKTEELNKKF 752 (904)
Q Consensus 732 ~~~~~~l~~~~~~~~~~~~~~ 752 (904)
.+-..++.....--+++-..+
T Consensus 333 reDeEIYKEf~eIAneliP~~ 353 (472)
T 3re2_A 333 KDDEEMYKEFHEIANDLIPNI 353 (472)
T ss_dssp GGGHHHHHHHHHHHHTHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhHH
No 311
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=28.87 E-value=1.6e+02 Score=31.06 Aligned_cols=73 Identities=12% Similarity=0.011 Sum_probs=51.5
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCC--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCc
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNP--LLAEAYSNLGNVYKERGQLQEALENYRHAVRL-KPDF 618 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~ 618 (904)
.+.+-.+|++.++...+..+++. ++..... .-+...| ......|.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~-i~~~~~~--p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKN-FQPKSML--AHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHT-HHHHCCC--SCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH-hccCCCC--cChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 35556889999999999988875 1110000 0011122 23568899999999999999999999999998 7754
No 312
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=27.92 E-value=1.9e+02 Score=21.95 Aligned_cols=30 Identities=27% Similarity=0.175 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
+.....-|.-+++.|+|.+|...|+++..+
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 444555566666777777777777777644
No 313
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=27.63 E-value=96 Score=25.34 Aligned_cols=33 Identities=30% Similarity=0.273 Sum_probs=22.9
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWR 36 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~ 36 (904)
+-..+..++..|...-..|+|++|+.+|..+++
T Consensus 14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445566677777777777888777777776643
No 314
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.63 E-value=1.8e+02 Score=23.58 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17306 734 IDVILERCEAKTEELNKKFE 753 (904)
Q Consensus 734 ~~~~l~~~~~~~~~~~~~~~ 753 (904)
...++..+..++..+....+
T Consensus 80 M~~nL~~v~~RL~~Le~~~~ 99 (116)
T 2dl1_A 80 MKETLQNVRTRLEILEKGLA 99 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 33456666666666666554
No 315
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=26.06 E-value=4.1e+02 Score=24.82 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhChh--------------
Q psy17306 588 YSNLGNVYKERGQLQEALENYRHAVRLKPD-FIDGYINLAAALVAA-GDMEQAVQAYVTALQYNPS-------------- 651 (904)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~-------------- 651 (904)
+..++.+..+.++|++.+.+.+++++.++. +.+-.+.+..+|-.. |....+...+...-+....
T Consensus 8 ~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissieqk~~~k~~~~~~~~i~~yr 87 (234)
T 2br9_A 8 LVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYR 87 (234)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchHHHHHHHHHH
Q ss_pred --------------------hHHHhhhcCcchHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHhc--------
Q psy17306 652 --------------------CYLKAIETRPDFAVAWSNLGCVFNAQGEI----------WLAIHHFEKAVSL-------- 693 (904)
Q Consensus 652 --------------------~~~~~l~~~p~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~~-------- 693 (904)
.+.............+-..|..|.-...+ +.|...|++|+++
T Consensus 88 ~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pt 167 (234)
T 2br9_A 88 QMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPT 167 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHccCCCC
Q ss_pred CcCcHHHHHHHHHHHHH-hcchhHHHHHHHHhhc
Q psy17306 694 DPNFLDAYINLGNVLKE-ARIFDRANTLFYVSSY 726 (904)
Q Consensus 694 ~p~~~~a~~~la~~~~~-~g~~~~A~~~~~~a~~ 726 (904)
+|-.-....|.+..|.. +|+.++|..+-+++.+
T Consensus 168 hPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 168 HPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 316
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.36 E-value=5.6e+02 Score=26.17 Aligned_cols=97 Identities=10% Similarity=-0.063 Sum_probs=65.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-----------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHH
Q psy17306 592 GNVYKERGQLQEALENYRHAVRLK-----------------PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYL 654 (904)
Q Consensus 592 g~~~~~~g~~~~A~~~~~~al~~~-----------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 654 (904)
..+.....+.++|++.+++....- -....+...++..|...|+.++|...++++-. .+.
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~----~l~ 158 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEK----TLD 158 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH----HHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hhh
Confidence 345566778999999988764331 11234567788999999999999998877654 233
Q ss_pred HhhhcCcc-hHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy17306 655 KAIETRPD-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692 (904)
Q Consensus 655 ~~l~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 692 (904)
..-..+|. ....+...+..|...+++..+...+-..+.
T Consensus 159 ~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 159 KKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 22223333 344555667778888998887777666665
No 317
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=25.22 E-value=4.5e+02 Score=24.98 Aligned_cols=139 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhChh--------------
Q psy17306 588 YSNLGNVYKERGQLQEALENYRHAVRLKPD-FIDGYINLAAALVAA-GDMEQAVQAYVTALQYNPS-------------- 651 (904)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~-------------- 651 (904)
+..+|.+..+.++|++.+++.+++++.++. +.+-.+.|..+|-.. |....+...+....+....
T Consensus 34 lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~~~~~i~~yr 113 (261)
T 3ubw_A 34 LVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYR 113 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHHHHHHHHHHH
Q ss_pred ----------------hHHHhhhcCcchHHH----HHHHHHHHHhCCCH----------HHHHHHHHHHHhc--------
Q psy17306 652 ----------------CYLKAIETRPDFAVA----WSNLGCVFNAQGEI----------WLAIHHFEKAVSL-------- 693 (904)
Q Consensus 652 ----------------~~~~~l~~~p~~~~a----~~~lg~~~~~~g~~----------~~A~~~~~~al~~-------- 693 (904)
.+.+.+-....++.+ +-..|..|.-...+ +.|...|++|.++
T Consensus 114 ~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~pT 193 (261)
T 3ubw_A 114 QMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPT 193 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q ss_pred CcCcHHHHHHHHHHHHH-hcchhHHHHHHHHhhc
Q psy17306 694 DPNFLDAYINLGNVLKE-ARIFDRANTLFYVSSY 726 (904)
Q Consensus 694 ~p~~~~a~~~la~~~~~-~g~~~~A~~~~~~a~~ 726 (904)
+|-.-....|.+..|.. +++.++|..+-+++.+
T Consensus 194 hPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 194 HPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 318
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.59 E-value=3.5e+02 Score=23.52 Aligned_cols=63 Identities=14% Similarity=-0.008 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---HHHH------HHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 236 AYSNLGNVYKERGQLQEALENYRHAVRLKPDF---IDGY------INLAAALVAAGDMEQAVQAYVTALQYN 298 (904)
Q Consensus 236 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~------~~la~~~~~~g~~~~A~~~~~~al~~~ 298 (904)
--+.-|..++..|+|=+|-+.++.+....+.. ...+ ...|..+...|+..-|...+.+++..-
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L 105 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYF 105 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34566777888899999999999998876544 2222 333445678899999999999998743
No 319
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=24.57 E-value=51 Score=24.61 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=20.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 667 WSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 667 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
...+|+=|...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 346777778888888888888888765
No 320
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=24.55 E-value=2.3e+02 Score=21.36 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=22.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcc
Q psy17306 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD 662 (904)
Q Consensus 628 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~ 662 (904)
-.-..|++++|+..|..+++ .|..++...|+
T Consensus 22 ~~D~~g~y~eAl~~Y~~aie----~l~~a~k~e~~ 52 (85)
T 2v6x_A 22 DLDTATQYEEAYTAYYNGLD----YLMLALKYEKN 52 (85)
T ss_dssp HHHHTTCHHHHHHHHHHHHH----HHHHHHHHCCC
T ss_pred HHHHcCCHHHHHHHHHHHHH----HHHHHHHhCCC
Confidence 44567889999998888887 66666665554
No 321
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=24.54 E-value=4.4e+02 Score=26.89 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=33.6
Q ss_pred HHHHHHHHHhh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 604 ALENYRHAVRL-----KPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 646 (904)
Q Consensus 604 A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 646 (904)
++..|.+++.. ...+...|..+|..+++.+++.+|+..+..+-
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHH
Confidence 67777777765 34456788999999999999999999766554
No 322
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.96 E-value=2.5e+02 Score=22.74 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=20.8
Q ss_pred cCCHHHHHHHHHHHHhhChhhHHHhhhcCcc
Q psy17306 632 AGDMEQAVQAYVTALQYNPSCYLKAIETRPD 662 (904)
Q Consensus 632 ~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~ 662 (904)
.|+.+.|+++|.+.+. .+.+++.+..+
T Consensus 35 ~g~k~~Al~lYk~GI~----eLe~Gl~I~~~ 61 (116)
T 2dl1_A 35 LGQKEEAKNYYKQGIG----HLLRGISISSK 61 (116)
T ss_dssp HTCHHHHHHHHHHHHH----HHHHHHSSCCC
T ss_pred cCCHHHHHHHHHHHHH----HHHHhcccccc
Confidence 4888888888888887 77777776654
No 323
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=22.28 E-value=5.9e+02 Score=25.32 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=21.5
Q ss_pred ChhhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 142 DLYCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 142 ~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
.++..+..+|..|...+++.+|...|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 56788888898888888888887776
No 324
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=22.23 E-value=4.9e+02 Score=26.62 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 603 EALENYRHAVRL-----KPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 646 (904)
Q Consensus 603 ~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 646 (904)
.++..|++++.. ...+...|..+|-.+.+.+++.+|+..+..+-
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa 330 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 330 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhh
Confidence 466778887775 34456788999999999999999999665443
No 325
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=22.13 E-value=3.4e+02 Score=27.64 Aligned_cols=44 Identities=20% Similarity=0.334 Sum_probs=30.6
Q ss_pred HHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 95 ALENYRHAVRL-----KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 138 (904)
Q Consensus 95 A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 138 (904)
++..|.+++.. .....-.|..+|-++++.+++.+|+..|-.+-.
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 45555555543 234456777888888888888888888877754
No 326
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=21.50 E-value=5.9e+02 Score=25.05 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17306 6 QLGIGLLELAHREYQAGDYESAERHCMQLWRQET 39 (904)
Q Consensus 6 ~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p 39 (904)
.+.. .+..|..++..|++.+|+..|+.++..-|
T Consensus 101 ~l~~-~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~ 133 (320)
T 3mkr_B 101 DLIQ-RLQLCYQLTTVGKFEEAVEKFRSILLSVP 133 (320)
T ss_dssp HHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHGG
T ss_pred HHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 3443 67899999999999999999999987654
No 327
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=20.66 E-value=3.9e+02 Score=27.34 Aligned_cols=31 Identities=6% Similarity=0.126 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 663 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 663 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
...-|..+|-.+.+.+++.+|+..+-.+-..
T Consensus 302 hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~V 332 (489)
T 4gq4_A 302 HIYPYMYLAGYHCRNRNVREALQAWADTATV 332 (489)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccceeecchHHHHhhhHHHHHHHhhhhhhh
Confidence 3456677777777788888888777776544
No 328
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=20.50 E-value=1.5e+02 Score=23.68 Aligned_cols=31 Identities=19% Similarity=0.133 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLW 35 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l 35 (904)
...++.++..|....+.|+|++|...++++-
T Consensus 17 aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~ 47 (105)
T 2e2a_A 17 AGDARSKLLEALKAAENGDFAKADSLVVEAG 47 (105)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4457778888888888888888888887763
No 329
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=20.16 E-value=1.5e+02 Score=23.49 Aligned_cols=30 Identities=20% Similarity=0.177 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQL 34 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~ 34 (904)
...++.++..|....+.|+|++|...++++
T Consensus 15 aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA 44 (103)
T 1wcr_A 15 SGQARSLAYAALKQAKQGDFAAAKAMMDQS 44 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 456777888888888999999998888876
Done!