RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17306
(904 letters)
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1,
structural genomics, structu genomics consortium, SGC,
metallopeptidase M20 family; 2.26A {Homo sapiens}
Length = 485
Score = 276 bits (707), Expect = 2e-83
Identities = 93/212 (43%), Positives = 131/212 (61%)
Query: 352 CAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTE 411
++++C +D HSG FGG +HE M DL+ ++G LV+ +G IL+P IY +V PL + E
Sbjct: 225 SYFMVEVKCRDQDFHSGTFGGILHEPMADLVALLGSLVDSSGHILVPGIYDEVVPLTEEE 284
Query: 412 EQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIP 471
Y+ I D E++R + K K ++LM WRYPSLS+HGIEGAF PG KTVIP
Sbjct: 285 INTYKAIHLDLEEYRNSSRVEKFLFDTKEEILMHLWRYPSLSIHGIEGAFDEPGTKTVIP 344
Query: 472 GKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPN 531
G+V+GKFSIR+VP+ VEK V +L +++ RNS NK + W N +
Sbjct: 345 GRVIGKFSIRLVPHMNVSAVEKQVTRHLEDVFSKRNSSNKMVVSMTLGLHPWIANIDDTQ 404
Query: 532 YVAAARATKYVYNVEPDLTREGGSIPITLTFE 563
Y+AA RA + V+ EPD+ R+G +IPI F+
Sbjct: 405 YLAAKRAIRTVFGTEPDMIRDGSTIPIAKMFQ 436
>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase,
protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin,
L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus
musculus} PDB: 2zof_A*
Length = 479
Score = 275 bits (705), Expect = 3e-83
Identities = 123/212 (58%), Positives = 150/212 (70%)
Query: 352 CAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTE 411
C I++EC+ KDLHSG++GGSVHEAMTDLI +MG LV+ GKILIP I V P+ D E
Sbjct: 218 CYFFIEVECSDKDLHSGVYGGSVHEAMTDLISLMGCLVDKKGKILIPGINDAVAPVTDEE 277
Query: 412 EQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIP 471
Y+ IDFD E+F + L + K +LM RWRYPSLSLHGIEGAFSG G KTVIP
Sbjct: 278 HALYDHIDFDMEEFAKDVGAETLLHSCKKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIP 337
Query: 472 GKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPN 531
KVVGKFSIR+VP+ P+ V + V YL++ + SPNKFK Y+ GK W ++ HP+
Sbjct: 338 RKVVGKFSIRLVPDMIPEVVSEQVSSYLSKKFAELQSPNKFKVYMGHGGKPWVSDFNHPH 397
Query: 532 YVAAARATKYVYNVEPDLTREGGSIPITLTFE 563
Y A RA K V+ VEPDLTREGGSIP+TLTF+
Sbjct: 398 YQAGRRALKTVFGVEPDLTREGGSIPVTLTFQ 429
>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo
protein, MCSG, structural GENO PSI-2, protein structure
initiative; HET: BGC; 1.90A {Streptococcus pneumoniae}
Length = 481
Score = 249 bits (637), Expect = 1e-73
Identities = 49/215 (22%), Positives = 93/215 (43%), Gaps = 9/215 (4%)
Query: 352 CAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTE 411
+ K++ A D+HS +GG V A L+ + L +G+IL+ +Y++V+ + E
Sbjct: 228 VTFDAKVKSADVDIHSS-YGGVVESAPWYLLQALQSLRAADGRILVEGLYEEVQEPNERE 286
Query: 412 EQFYEKI-DFDTEDFRTAIDHPK-LTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTV 469
E + E+ L + ++ L + P+L++ GI+ + G G KT+
Sbjct: 287 MALLETYGQRNPEEVSRIYGLELPLLQEERMAFLKRFFFDPALNIEGIQSGYQGQGVKTI 346
Query: 470 IPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEH 529
+P + K +R+VP P V + + L+ +N +K + Y S+R++
Sbjct: 347 LPAEASAKLEVRLVPGLEPHDVLEKIRKQLD-----KNGFDKVELYYTLGEMSYRSDMSA 401
Query: 530 PNYVAAARATKYVYNVEPD-LTREGGSIPITLTFE 563
P + K Y L G+ P+ F+
Sbjct: 402 PAILNVIELAKKFYPQGVSVLPTTAGTGPMHTVFD 436
>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20
familiy, phosphorylase/hydrolase-L structural genomics;
HET: MSE; 1.50A {Legionella pneumophila subsp}
Length = 472
Score = 232 bits (594), Expect = 1e-67
Identities = 45/214 (21%), Positives = 84/214 (39%), Gaps = 3/214 (1%)
Query: 352 CAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPN-GKILIPHIYKDVEPLGDT 410
+ +E ++ +HSG G V ++ ++ ++ + N G+I +P +Y D+
Sbjct: 210 LVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEIKLPQLYCDIPDERIK 269
Query: 411 E-EQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTV 469
+ +Q E + ID K DK Q++++R P+L++ G +G + V
Sbjct: 270 QAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNV 329
Query: 470 IPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEH 529
+ K S+R+ P P+ + L + N+ FK S
Sbjct: 330 MRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPY-NAKVDFKIQNGGSKGWNAPLLSD 388
Query: 530 PNYVAAARATKYVYNVEPDLTREGGSIPITLTFE 563
AA+ A+ Y+ EGG+IP
Sbjct: 389 WLAKAASEASMTYYDKPAAYMGEGGTIPFMSMLG 422
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 220 bits (562), Expect = 4e-64
Identities = 175/290 (60%), Positives = 203/290 (70%), Gaps = 56/290 (19%)
Query: 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAI 69
G +ELAHREYQAGD+E+AERHCMQLWRQE +NTGVLLLLSSIHFQCR+LD+SAHFSTLAI
Sbjct: 1 GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
KQNPLLAEAYSNLGNVYKERGQLQEA+E+YRHA+RLKPDFIDGYINLAAALVAAGDME A
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNL 189
VQAYV+ALQYNPDLYCVRSDLGNLLKALGRL+EAK Y LKA+
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY---------LKAI--------- 162
Query: 190 HTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 249
+P N+ A A+SNLG V+ +G+
Sbjct: 163 ---ETQP-----------NF------------------------AVAWSNLGCVFNAQGE 184
Query: 250 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+ A+ ++ AV L P+F+D YINL L A ++AV AY+ AL +P
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Score = 190 bits (484), Expect = 2e-53
Identities = 79/292 (27%), Positives = 133/292 (45%), Gaps = 44/292 (15%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78
AGD E A + + + + V L ++ +L+++ AI+ P A A
Sbjct: 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171
Query: 79 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 138
+SNLG V+ +G++ A+ ++ AV L P+F+D YINL L A ++AV AY+ AL
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231
Query: 139 YNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNLLKALGRLDEAK 187
+P+ V +L + G +D A D Y +L N LK G + EA
Sbjct: 232 LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEA- 290
Query: 188 NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKER 247
C Y A++ P A++ +NL N+ +E+
Sbjct: 291 -----------------EDC-Y--NT------------ALRLCPTHADSLNNLANIKREQ 318
Query: 248 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
G ++EA+ YR A+ + P+F + NLA+ L G +++A+ Y A++ +P
Sbjct: 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370
Score = 171 bits (436), Expect = 7e-47
Identities = 70/281 (24%), Positives = 113/281 (40%), Gaps = 56/281 (19%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78
+ G + A H R + + + L++ ++ + A++ NP L
Sbjct: 78 KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137
Query: 79 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 138
S+LGN+ K G+L+EA Y A+ +P+F + NL A G++ A+ + A+
Sbjct: 138 RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197
Query: 139 YNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVT 198
+P+ +LGN+LK D A Y L+AL ++ P
Sbjct: 198 LDPNFLDAYINLGNVLKEARIFDRAVAAY---------LRAL------------SLSP-- 234
Query: 199 MKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYR 258
N+ A + NL VY E+G + A++ YR
Sbjct: 235 ---------NH------------------------AVVHGNLACVYYEQGLIDLAIDTYR 261
Query: 259 HAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
A+ L+P F D Y NLA AL G + +A Y TAL+ P
Sbjct: 262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
Score = 150 bits (382), Expect = 9e-40
Identities = 80/141 (56%), Positives = 96/141 (68%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++ P + Y NL G ++ A++ Y A++ PD +L L A G +E
Sbjct: 93 ALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLE 152
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+A +CYLKAIET+P+FAVAWSNLGCVFNAQGEIWLAIHHFEKAV+LDPN
Sbjct: 153 EAK-----------ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201
Query: 697 FLDAYINLGNVLKEARIFDRA 717
FLDAYINLGNVLKEARIFDRA
Sbjct: 202 FLDAYINLGNVLKEARIFDRA 222
Score = 149 bits (380), Expect = 2e-39
Identities = 93/156 (59%), Positives = 108/156 (69%), Gaps = 11/156 (7%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
F+CR+LD+SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA+E+YRHA+RLKPDFIDG
Sbjct: 44 FQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG 103
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
YINLAAALVAAGDME AVQ Y+ A++ PD S+LG + A G +
Sbjct: 104 YINLAAALVAAGDMEGAVQ-----------AYVSALQYNPDLYCVRSDLGNLLKALGRLE 152
Query: 682 LAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A + KA+ PNF A+ NLG V A
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 188
Score = 147 bits (374), Expect = 1e-38
Identities = 61/216 (28%), Positives = 94/216 (43%), Gaps = 56/216 (25%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A+ +P A + NL VY E+G + A++ YR A+ L+P F D Y NLA AL G +
Sbjct: 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAK 187
+A Y TAL+ P D ++L N+ + G ++EA
Sbjct: 289 EAEDCYNTALRLCPTHA--------------------DSL---NNLANIKREQGNIEEAV 325
Query: 188 NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKER 247
L+ + A++ P A A+SNL +V +++
Sbjct: 326 RLYRK---------------------------------ALEVFPEFAAAHSNLASVLQQQ 352
Query: 248 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
G+LQEAL +Y+ A+R+ P F D Y N+ L D
Sbjct: 353 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
Score = 146 bits (370), Expect = 4e-38
Identities = 56/141 (39%), Positives = 77/141 (54%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
AI+ P A A+SNLG V+ +G++ A+ ++ AV L P+F+D YINL L A +
Sbjct: 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD 220
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+AV YL+A+ P+ AV NL CV+ QG I LAI + +A+ L P+
Sbjct: 221 RAVA-----------AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269
Query: 697 FLDAYINLGNVLKEARIFDRA 717
F DAY NL N LKE A
Sbjct: 270 FPDAYCNLANALKEKGSVAEA 290
Score = 143 bits (363), Expect = 3e-37
Identities = 55/145 (37%), Positives = 78/145 (53%), Gaps = 11/145 (7%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625
+D + AI+ P +AY NL N KE+G + EA + Y A+RL P D NL
Sbjct: 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
A G++E+AV+ Y KA+E P+FA A SNL V QG++ A+
Sbjct: 312 ANIKREQGNIEEAVR-----------LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360
Query: 686 HFEKAVSLDPNFLDAYINLGNVLKE 710
H+++A+ + P F DAY N+GN LKE
Sbjct: 361 HYKEAIRISPTFADAYSNMGNTLKE 385
Score = 140 bits (355), Expect = 4e-36
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 11/152 (7%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625
++ + A++ NP L S+LGN+ K G+L+EA Y A+ +P+F + NL
Sbjct: 116 DMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNL 175
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
A G++ A+ + KA+ P+F A+ NLG V A+
Sbjct: 176 GCVFNAQGEIWLAI-----------HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 224
Query: 686 HFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+ +A+SL PN + NL V E + D A
Sbjct: 225 AYLRALSLSPNHAVVHGNLACVYYEQGLIDLA 256
Score = 137 bits (348), Expect = 3e-35
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A+ +P A + NL VY E+G + A++ YR A+ L+P F D Y NLA AL G +
Sbjct: 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+A CY A+ P A + +NL + QG I A+ + KA+ + P
Sbjct: 289 EAED-----------CYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337
Query: 697 FLDAYINLGNVLKEARIFDRA 717
F A+ NL +VL++ A
Sbjct: 338 FAAAHSNLASVLQQQGKLQEA 358
Score = 133 bits (336), Expect = 1e-33
Identities = 29/152 (19%), Positives = 59/152 (38%), Gaps = 11/152 (7%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625
+ + +Q P L +++ + +L + A++ P + Y NL
Sbjct: 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
G +++A++ Y A+ +PDF + NL A G++ A+
Sbjct: 74 GNVYKERGQLQEAIE-----------HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 686 HFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+ A+ +P+ +LGN+LK + A
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154
Score = 118 bits (298), Expect = 1e-28
Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 18/186 (9%)
Query: 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFST 66
LG L E ++ A ++ N+ V L+ ++++ +D +
Sbjct: 209 LGNVLKEA-------RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261
Query: 67 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 126
AI+ P +AY NL N KE+G + EA + Y A+RL P D NLA G++
Sbjct: 262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321
Query: 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY-----------CVRSDLGN 175
E+AV+ Y AL+ P+ S+L ++L+ G+L EA Y S++GN
Sbjct: 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381
Query: 176 LLKALG 181
LK +
Sbjct: 382 TLKEMQ 387
Score = 116 bits (293), Expect = 4e-28
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 11/130 (8%)
Query: 588 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 647
L + + G + A + R +PD + L++ ++++
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAH------- 54
Query: 648 YNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNV 707
AI+ P A A+SNLG V+ +G++ AI H+ A+ L P+F+D YINL
Sbjct: 55 ----FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAA 110
Query: 708 LKEARIFDRA 717
L A + A
Sbjct: 111 LVAAGDMEGA 120
Score = 102 bits (257), Expect = 2e-23
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 11/103 (10%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++ P A++ +NL N+ +E+G ++EA+ YR A+ + P+F + NLA+ L G ++
Sbjct: 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 356
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE 679
+A+ Y +AI P FA A+SN+G +
Sbjct: 357 EALM-----------HYKEAIRISPTFADAYSNMGNTLKEMQD 388
Score = 80.7 bits (200), Expect = 3e-16
Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 11/97 (11%)
Query: 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEI 680
G + LA AGD E A + ++ PD L + +
Sbjct: 1 GPMELAHREYQAGDFEAAER-----------HCMQLWRQEPDNTGVLLLLSSIHFQCRRL 49
Query: 681 WLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+ H A+ +P +AY NLGNV KE A
Sbjct: 50 DRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86
Score = 75.3 bits (186), Expect = 2e-14
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFST 66
L L E G AE R + L L++I + ++++
Sbjct: 277 LANALKEK-------GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329
Query: 67 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 125
A++ P A A+SNL +V +++G+LQEAL +Y+ A+R+ P F D Y N+ L D
Sbjct: 330 KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
Score = 44.1 bits (105), Expect = 1e-04
Identities = 9/55 (16%), Positives = 18/55 (32%)
Query: 667 WSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLF 721
L G+ A H + +P+ + L ++ + R DR+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFS 56
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 185 bits (471), Expect = 2e-52
Identities = 50/301 (16%), Positives = 99/301 (32%), Gaps = 36/301 (11%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
++ LA R Y D++ + + ++ + L + + K ++ + S +
Sbjct: 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD 84
Query: 71 QNPLLAEAYSNLGNVYKERGQLQE-ALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
P ++ +G Y G E A A L+ + +I + + +QA
Sbjct: 85 LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQA 144
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNLLK 178
+ AY TA Q + +G A+ + V ++G +
Sbjct: 145 MAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAF 204
Query: 179 ALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYS 238
G A+ + ++ + V + +
Sbjct: 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKW------------------------EPLLN 240
Query: 239 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 298
NLG+V ++ + EAL+ +R A+ L P Y + G+ E AV + TAL
Sbjct: 241 NLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300
Query: 299 P 299
Sbjct: 301 R 301
Score = 141 bits (357), Expect = 6e-37
Identities = 39/300 (13%), Positives = 75/300 (25%), Gaps = 55/300 (18%)
Query: 22 GDY-ESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYS 80
G Y + +E + N V++ L+ H+ +++ ++++P A
Sbjct: 1 GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60
Query: 81 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG-DMEQAVQAYVTALQY 139
E + E V L P + + + G E A + A
Sbjct: 61 VHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL 120
Query: 140 NPDLYCVRSDLGNLLKALGRLDEAKDLY--CVRSD---------LGNLLKALGRLDEAKN 188
G+ D+A Y + +G A+
Sbjct: 121 EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE- 179
Query: 189 LHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERG 248
FS A+ P +G V + G
Sbjct: 180 -------------------------------RFFSQ-ALSIAPEDPFVMHEVGVVAFQNG 207
Query: 249 QLQEALENYRHAVRL---------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+ + A + + A+ + NL +A+ + AL P
Sbjct: 208 EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP 267
Score = 135 bits (341), Expect = 8e-35
Identities = 29/224 (12%), Positives = 66/224 (29%), Gaps = 47/224 (20%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A + +G Y + A + A+ + P+ + G+ +
Sbjct: 151 AAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWK 210
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAK 187
A + ++ AL+ + + + ++LG++ + L + EA
Sbjct: 211 TAEKWFLDALEKIKAIGNEVTV--------------DKWEPLLNNLGHVCRKLKKYAEAL 256
Query: 188 NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKER 247
+ H + A+ P A YS +G ++
Sbjct: 257 DYHRQ---------------------------------ALVLIPQNASTYSAIGYIHSLM 283
Query: 248 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291
G + A++ + A+ L+ D L + +A
Sbjct: 284 GNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327
Score = 132 bits (334), Expect = 5e-34
Identities = 25/249 (10%), Positives = 58/249 (23%), Gaps = 45/249 (18%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
++ + +L + + + + P LV
Sbjct: 14 SVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKAN 73
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRS------------DLGN 175
+ + P +G +G +E Y ++ G+
Sbjct: 74 ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGH 133
Query: 176 LLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAE 235
D+A A + T A +
Sbjct: 134 SFAVESEHDQAM--------------------------------AAYFT-AAQLMKGCHL 160
Query: 236 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
+G Y + A + A+ + P+ + G+ + A + ++ AL
Sbjct: 161 PMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220
Query: 296 QYNPLLKKE 304
+ + E
Sbjct: 221 EKIKAIGNE 229
Score = 132 bits (333), Expect = 9e-34
Identities = 31/192 (16%), Positives = 61/192 (31%), Gaps = 13/192 (6%)
Query: 531 NYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSN 590
++ + T V +P + I E K ++ + S + P ++
Sbjct: 37 DFKMCYKLTSVVMEKDPFHA-SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFA 95
Query: 591 LGNVYKERGQLQE-ALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 649
+G Y G E A A L+ + +I + + +QA+
Sbjct: 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAM---------- 145
Query: 650 PSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLK 709
+ Y A + + +G + LA F +A+S+ P +G V
Sbjct: 146 -AAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAF 204
Query: 710 EARIFDRANTLF 721
+ + A F
Sbjct: 205 QNGEWKTAEKWF 216
Score = 121 bits (306), Expect = 3e-30
Identities = 23/141 (16%), Positives = 49/141 (34%), Gaps = 2/141 (1%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A + +G Y + A + A+ + P+ + G+ +
Sbjct: 151 AAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWK 210
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
A + ++ AL+ + + T + +NLG V + A+ + +A+ L P
Sbjct: 211 TAEKWFLDALEKIKA--IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268
Query: 697 FLDAYINLGNVLKEARIFDRA 717
Y +G + F+ A
Sbjct: 269 NASTYSAIGYIHSLMGNFENA 289
Score = 120 bits (302), Expect = 8e-30
Identities = 23/162 (14%), Positives = 51/162 (31%), Gaps = 20/162 (12%)
Query: 565 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 624
K + + + + A A+ G+ + + +A+ Y A +L +
Sbjct: 105 HKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY 164
Query: 625 LAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAI 684
+ + + A + + +A+ P+ +G V GE A
Sbjct: 165 IGLEYGLTNNSKLAER-----------FFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAE 213
Query: 685 HHFEKAVSL---------DPNFLDAYINLGNVLKEARIFDRA 717
F A+ + NLG+V ++ + + A
Sbjct: 214 KWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255
Score = 119 bits (301), Expect = 1e-29
Identities = 20/142 (14%), Positives = 41/142 (28%), Gaps = 12/142 (8%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
++ + +L + + + + P LV
Sbjct: 14 SVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKAN 73
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW-LAIHHFEKAVSLDP 695
+ K ++ P V+W +GC + G A + KA +L+
Sbjct: 74 ELFY-----------LSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122
Query: 696 NFLDAYINLGNVLKEARIFDRA 717
+ A+I G+ D+A
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQA 144
Score = 118 bits (299), Expect = 2e-29
Identities = 23/154 (14%), Positives = 51/154 (33%), Gaps = 20/154 (12%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL---------KP 616
+ F + A+ P +G V + G+ + A + + A+
Sbjct: 174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233
Query: 617 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNA 676
+ NL +A+ + +A+ P A +S +G + +
Sbjct: 234 KWEPLLNNLGHVCRKLKKYAEALD-----------YHRQALVLIPQNASTYSAIGYIHSL 282
Query: 677 QGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKE 710
G A+ +F A+ L + + LG+ ++
Sbjct: 283 MGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEM 316
Score = 108 bits (273), Expect = 6e-26
Identities = 22/157 (14%), Positives = 41/157 (26%), Gaps = 12/157 (7%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
+ +++ ++++P A E + E V L P
Sbjct: 33 YYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVS 92
Query: 622 YINLAAALVAAG-DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEI 680
+ + + G E A + KA + AW G F + E
Sbjct: 93 WFAVGCYYLMVGHKNEHARR-----------YLSKATTLEKTYGPAWIAYGHSFAVESEH 141
Query: 681 WLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A+ + A L + +G A
Sbjct: 142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178
Score = 94.7 bits (236), Expect = 4e-21
Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 16/176 (9%)
Query: 5 AQLGIGLLELAHREYQA-GDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAH 63
L IGL EY + + AER Q + V+ + + FQ + +
Sbjct: 161 PMLYIGL------EYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK 214
Query: 64 FSTLAIKQNPLL---------AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 114
+ A+++ + +NLG+V ++ + EAL+ +R A+ L P Y
Sbjct: 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYS 274
Query: 115 NLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR 170
+ G+ E AV + TAL D + LG+ ++ EA ++
Sbjct: 275 AIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGADIK 330
Score = 84.3 bits (209), Expect = 1e-17
Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 20/127 (15%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLL---------AEAYSNLGNVYKERGQLQEALENYRHAV 612
F+ + + + A+++ + +NLG+V ++ + EAL+ +R A+
Sbjct: 204 FQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263
Query: 613 RLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGC 672
L P Y + G+ E AV + A+ R D + + LG
Sbjct: 264 VLIPQNASTYSAIGYIHSLMGNFENAVD-----------YFHTALGLRRDDTFSVTMLGH 312
Query: 673 VFNAQGE 679
Sbjct: 313 CIEMYIG 319
Score = 71.2 bits (175), Expect = 2e-13
Identities = 14/77 (18%), Positives = 29/77 (37%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625
K ++ + A+ P A YS +G ++ G + A++ + A+ L+ D L
Sbjct: 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML 310
Query: 626 AAALVAAGDMEQAVQAY 642
+ +A
Sbjct: 311 GHCIEMYIGDSEAYIGA 327
Score = 47.7 bits (114), Expect = 9e-06
Identities = 6/69 (8%), Positives = 16/69 (23%)
Query: 653 YLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEAR 712
++++ + +L + + + DP L E
Sbjct: 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELN 70
Query: 713 IFDRANTLF 721
+ L
Sbjct: 71 KANELFYLS 79
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 189 bits (481), Expect = 3e-51
Identities = 48/300 (16%), Positives = 99/300 (33%), Gaps = 37/300 (12%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
LL A + + ++ + N V L + + + +K S +
Sbjct: 308 LLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
++P A + +G Y ++ EA + + + P F +I A + G+ +QA+
Sbjct: 368 RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAI 427
Query: 131 QAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNLLKA 179
AY TA + + LG LG + A + + ++LG +
Sbjct: 428 SAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN 487
Query: 180 LGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSN 239
+ A N QNA++ A ++N
Sbjct: 488 KSDMQTAINHF-----------QNALLLV---------------KKTQSNEKPWAATWAN 521
Query: 240 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
LG+ Y++ A++ + L + + + +A + A+ +L +P
Sbjct: 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581
Score = 141 bits (356), Expect = 5e-35
Identities = 35/284 (12%), Positives = 78/284 (27%), Gaps = 44/284 (15%)
Query: 33 QLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 92
+++ L +L + A +I ++ + R +
Sbjct: 262 TYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRF 321
Query: 93 QEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGN 152
+ L + + P +D Y A+L +G+ + + +P+ +G
Sbjct: 322 IDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI 381
Query: 153 LLKALGRLDEAKDLY--CVRSD---------LGNLLKALGRLDEAKNLHTENIKPVTMKV 201
+ ++ EA+ + D + G D+A
Sbjct: 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAI-------------- 427
Query: 202 QNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAV 261
+ ++T A + Y LG + + G + A E + +
Sbjct: 428 ------------------SAYTT-AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468
Query: 262 RLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKED 305
L L DM+ A+ + AL + +
Sbjct: 469 ALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512
Score = 133 bits (335), Expect = 2e-32
Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 11/156 (7%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
E + +K S + ++P A + +G Y ++ EA + + + P F
Sbjct: 350 HESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA 409
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
+I A + G+ +QA+ AY TA + +L + LG G I
Sbjct: 410 WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL-----------PYLFLGMQHMQLGNIL 458
Query: 682 LAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
LA + + + +L LG V A
Sbjct: 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTA 494
Score = 124 bits (312), Expect = 1e-29
Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
+I ++ + R + + L + + P +D Y A+L +G+
Sbjct: 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN 356
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ ++ P+ AV W +G + +I A +F K+ ++DP
Sbjct: 357 KLYL-----------ISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405
Query: 697 FLDAYINLGNVLKEARIFDRA 717
F A+I + D+A
Sbjct: 406 FGPAWIGFAHSFAIEGEHDQA 426
Score = 119 bits (301), Expect = 3e-28
Identities = 23/152 (15%), Positives = 55/152 (36%), Gaps = 18/152 (11%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-------KPDF 618
+ + + + + LG V + +Q A+ ++++A+ L + +
Sbjct: 456 NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515
Query: 619 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG 678
+ NL A + A+ + + + A + + V+ +
Sbjct: 516 AATWANLGHAYRKLKMYDAAID-----------ALNQGLLLSTNDANVHTAIALVYLHKK 564
Query: 679 EIWLAIHHFEKAVSLDPNFLDAYINLGNVLKE 710
LAI H +++++ PN + A L L+E
Sbjct: 565 IPGLAITHLHESLAISPNEIMASDLLKRALEE 596
Score = 118 bits (297), Expect = 9e-28
Identities = 27/141 (19%), Positives = 45/141 (31%), Gaps = 4/141 (2%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A + Y LG + + G + A E + + L L DM+
Sbjct: 433 AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQ 492
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
A+ + AL K +A W+NLG + AI + + L N
Sbjct: 493 TAINHFQNALLLVK----KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ + + V +I A
Sbjct: 549 DANVHTAIALVYLHKKIPGLA 569
Score = 114 bits (287), Expect = 1e-26
Identities = 25/156 (16%), Positives = 47/156 (30%), Gaps = 11/156 (7%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
F + +T ++ +P + Y E G+ + V P+
Sbjct: 316 FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT 375
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
++ + + + +A + + K+ P F AW F +GE
Sbjct: 376 WLAVGIYYLCVNKISEARR-----------YFSKSSTMDPQFGPAWIGFAHSFAIEGEHD 424
Query: 682 LAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
AI + A L Y+ LG + A
Sbjct: 425 QAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLA 460
Score = 105 bits (264), Expect = 1e-23
Identities = 39/307 (12%), Positives = 77/307 (25%), Gaps = 41/307 (13%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
L H Y+ A ++ T N L+ ++ ++ T
Sbjct: 87 LRLWRHDALMQQQYKCAAFVGEKV-LDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL 145
Query: 71 QNPLLA----------------EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 114
N A A + LG R + A + +K +
Sbjct: 146 YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEA-SMCY 204
Query: 115 NLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLG 174
+ ++A + Y AL + Y L +
Sbjct: 205 LRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVS---------------------N 243
Query: 175 NLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYG--GRKPTTLESAHFSTLAIKQNPL 232
+LL A D L+ ++ L A +I
Sbjct: 244 HLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEK 303
Query: 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYV 292
++ + R + + L + + P +D Y A+L +G+ +
Sbjct: 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISN 363
Query: 293 TALQYNP 299
+ +P
Sbjct: 364 DLVDRHP 370
Score = 105 bits (263), Expect = 1e-23
Identities = 28/183 (15%), Positives = 52/183 (28%), Gaps = 26/183 (14%)
Query: 565 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 624
RK +K+A+ + L A G VY A E Y+ A+ + + +
Sbjct: 180 RKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239
Query: 625 LAAALVAAGDMEQAVQAYVTALQYNP--------------------------SCYLKAIE 658
L + + D E + + Y+ YL +I
Sbjct: 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN 299
Query: 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRAN 718
+ + + K + +DP LD Y L E+ ++
Sbjct: 300 GLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLY 359
Query: 719 TLF 721
+
Sbjct: 360 LIS 362
Score = 98.8 bits (246), Expect = 2e-21
Identities = 28/198 (14%), Positives = 49/198 (24%), Gaps = 53/198 (26%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A + Y LG + + G + A E + + L L DM+
Sbjct: 433 AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQ 492
Query: 128 QAVQAYVTALQY-------NPDLYCVRSDLGNLLKALGRLDEAKDLY-----------CV 169
A+ + AL ++LG+ + L D A D V
Sbjct: 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552
Query: 170 RSDLGNLLKALGRLDEA-KNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIK 228
+ + + A +LH ++
Sbjct: 553 HTAIALVYLHKKIPGLAITHLHE----------------------------------SLA 578
Query: 229 QNPLLAEAYSNLGNVYKE 246
+P A L +E
Sbjct: 579 ISPNEIMASDLLKRALEE 596
Score = 82.2 bits (203), Expect = 3e-16
Identities = 20/144 (13%), Positives = 48/144 (33%), Gaps = 7/144 (4%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK-------Q 71
Q G+ A + + + +L L + F + + + A+
Sbjct: 452 MQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511
Query: 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 131
A ++NLG+ Y++ A++ + L + + + +A + A+
Sbjct: 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAIT 571
Query: 132 AYVTALQYNPDLYCVRSDLGNLLK 155
+L +P+ L L+
Sbjct: 572 HLHESLAISPNEIMASDLLKRALE 595
Score = 67.9 bits (166), Expect = 7e-12
Identities = 40/302 (13%), Positives = 83/302 (27%), Gaps = 36/302 (11%)
Query: 20 QAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHF----STLAIKQNPLL 75
G++ + H + + + S+ + + ST
Sbjct: 15 TPGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANNTSTDGSFLKERN 74
Query: 76 AEAYSNLGNVYKERGQLQEALENYRH---------AVRLKPDFIDGYINLAAALVAAGDM 126
A+ +L R +AL ++ + + + D + LA GD
Sbjct: 75 AQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFW-LAQVYCCTGDY 133
Query: 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEA 186
+A YN C R L L A +L G A
Sbjct: 134 ARAKCLLTKEDLYNRSSAC-RYLAAFCLVKLYDWQGALNLL------GETNPFRKDEKNA 186
Query: 187 KNLHTENIKPVTMKVQNAIVCNYG------GRKPTTLESAHFSTLAIKQNPLLAEAYSNL 240
L ++ +K++ ++ G + A+ + EA+ L
Sbjct: 187 NKLLMQDGG---IKLEASMCYLRGQVYTNLSNFD---RAKECYKEALMVDAKCYEAFDQL 240
Query: 241 GNVYKERGQLQEALE---NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 297
+ + + L NY + F+ L + D + + Y++++
Sbjct: 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300
Query: 298 NP 299
Sbjct: 301 LE 302
Score = 64.1 bits (156), Expect = 1e-10
Identities = 21/193 (10%), Positives = 47/193 (24%), Gaps = 30/193 (15%)
Query: 558 ITLTFECRKLDKSAHFSTLAIK---QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL 614
L + ++S+ LA + A + LG R + A + +
Sbjct: 137 KCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGI 196
Query: 615 KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSC---------------------- 652
K + + ++A + Y AL + C
Sbjct: 197 KLEA-SMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLV 255
Query: 653 ----YLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708
Y + F + L + + + +++ D + + L
Sbjct: 256 LKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL 315
Query: 709 KEARIFDRANTLF 721
F +
Sbjct: 316 FVRSRFIDVLAIT 328
Score = 59.1 bits (143), Expect = 4e-09
Identities = 26/203 (12%), Positives = 50/203 (24%), Gaps = 42/203 (20%)
Query: 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQ 602
N P+T D S A + L + + + Q +
Sbjct: 42 NNSNSQLSTLTISPMTYLANNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYK 101
Query: 603 EALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS----------- 651
A + + + D + LA GD +A YN S
Sbjct: 102 CAAFVGEKVLDITGNPNDAFW-LAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL 160
Query: 652 ----------------------------CYLKAIETRPDFAVAWSNLGCVFNAQGEIWLA 683
++ + + A G V+ A
Sbjct: 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLE-ASMCYLRGQVYTNLSNFDRA 219
Query: 684 IHHFEKAVSLDPNFLDAYINLGN 706
+++A+ +D +A+ L +
Sbjct: 220 KECYKEALMVDAKCYEAFDQLVS 242
Score = 35.6 bits (82), Expect = 0.089
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 677 QGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFY 722
Q + A EK + + N DA+ L V + RA L
Sbjct: 97 QQQYKCAAFVGEKVLDITGNPNDAFW-LAQVYCCTGDYARAKCLLT 141
Score = 34.0 bits (78), Expect = 0.22
Identities = 12/75 (16%), Positives = 26/75 (34%)
Query: 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP 73
L H + Y++A Q TN+ V ++ ++ + + ++ +P
Sbjct: 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581
Query: 74 LLAEAYSNLGNVYKE 88
A L +E
Sbjct: 582 NEIMASDLLKRALEE 596
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 175 bits (445), Expect = 7e-49
Identities = 52/292 (17%), Positives = 96/292 (32%), Gaps = 27/292 (9%)
Query: 51 IHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 110
+ L ++A + P EA+ +LG E + A+ HA L P I
Sbjct: 30 SMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI 89
Query: 111 DGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR 170
+ LA + + A+ + L P + S + L+
Sbjct: 90 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQ------- 142
Query: 171 SDLGNLLKALGRLDEAKNLHTE--NIKPVTMKVQN--AIVCNYGGRKPTTLESA--HFST 224
A E + L + P ++ ++ N +SA +
Sbjct: 143 -SEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNN----YDSAAANLRR 197
Query: 225 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 284
A++ P A+ ++ LG + QEAL+ Y A+ + P ++ N+A +
Sbjct: 198 -AVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256
Query: 285 EQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALW--RRGALVMMKRP 334
+ A + V A+ E +++W R L +M RP
Sbjct: 257 DLAAKQLVRAIYMQV--GGTTPTGE----ASREATRSMWDFFRMLLNVMNRP 302
Score = 162 bits (413), Expect = 2e-44
Identities = 42/259 (16%), Positives = 67/259 (25%), Gaps = 59/259 (22%)
Query: 67 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 126
+ E G + L EA + + P+ + + +L
Sbjct: 12 FEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKD 71
Query: 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY------------------- 167
A+ A A +P V + L + A
Sbjct: 72 GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQ 131
Query: 168 -------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESA 220
A E + L
Sbjct: 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA---------------------------- 163
Query: 221 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 280
A++ NP A+ +++LG +Y A N R AV L+PD + L A L
Sbjct: 164 -----ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN 218
Query: 281 AGDMEQAVQAYVTALQYNP 299
++A+ AY AL NP
Sbjct: 219 GNRPQEALDAYNRALDINP 237
Score = 127 bits (320), Expect = 4e-32
Identities = 30/192 (15%), Positives = 58/192 (30%), Gaps = 14/192 (7%)
Query: 529 HPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAY 588
P Y + D+ + + A++ NP A+ +
Sbjct: 119 QPQYEQLGSVN---LQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLH 175
Query: 589 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 648
++LG +Y A N R AV L+PD + L A L ++A+
Sbjct: 176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALD-------- 227
Query: 649 NPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708
Y +A++ P + N+ ++ + LA +A+ +
Sbjct: 228 ---AYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREA 284
Query: 709 KEARIFDRANTL 720
+ L
Sbjct: 285 TRSMWDFFRMLL 296
Score = 126 bits (318), Expect = 7e-32
Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 4/156 (2%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625
L ++A + P EA+ +LG E + A+ HA L P I + L
Sbjct: 36 NLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 95
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPS----CYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
A + + A+ + L P + + + F A E
Sbjct: 96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155
Query: 682 LAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A+ ++PN + +LG + + +D A
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSA 191
Score = 122 bits (308), Expect = 1e-30
Identities = 22/156 (14%), Positives = 49/156 (31%), Gaps = 26/156 (16%)
Query: 577 AIKQNPLLAEAYS---------------NLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
+ P + S + + + +E A+ + P+
Sbjct: 115 WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
+ +L + + + A +A+E RPD A W+ LG
Sbjct: 175 HASLGVLYNLSNNYDSAAA-----------NLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 682 LAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A+ + +A+ ++P ++ N+ +D A
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259
Score = 118 bits (299), Expect = 2e-29
Identities = 14/143 (9%), Positives = 31/143 (21%), Gaps = 11/143 (7%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
+ E G + L EA + + P+ + + +L
Sbjct: 12 FEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKD 71
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP 695
A+ A A P + L + A+ + P
Sbjct: 72 GLAIIA-----------LNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120
Query: 696 NFLDAYINLGNVLKEARIFDRAN 718
+ + + +
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQS 143
Score = 109 bits (274), Expect = 5e-26
Identities = 35/262 (13%), Positives = 69/262 (26%), Gaps = 48/262 (18%)
Query: 10 GLLELAHREYQ---AGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFST 66
A + + + + L + + + +
Sbjct: 103 HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH 162
Query: 67 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 126
A++ NP A+ +++LG +Y A N R AV L+PD + L A L
Sbjct: 163 AALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRP 222
Query: 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEA 186
++A+ AY AL NP V ++ + + D A L++A+
Sbjct: 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA---------AKQLVRAI------ 267
Query: 187 KNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE 246
++ + + +
Sbjct: 268 ------YMQV-----------------------GGTTPTGEASREATRSMWDFFRMLLNV 298
Query: 247 RGQLQEALENYRHAV-RLKPDF 267
+ Y V +F
Sbjct: 299 MNRPDLVELTYAQNVEPFAKEF 320
Score = 104 bits (262), Expect = 1e-24
Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 9/147 (6%)
Query: 565 RKLDKS-AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623
D + A+ A++ P A+ ++ LG + QEAL+ Y A+ + P ++
Sbjct: 186 NNYDSAAANLRR-AVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMY 244
Query: 624 NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD--FAVAWSNLGCVFNAQGEIW 681
N+A + + A + V A+ W + N
Sbjct: 245 NMAVSYSNMSQYDLAAKQLVRAIYMQVG-GTTPTGEASREATRSMWDFFRMLLNVMNRPD 303
Query: 682 LAIHHFEKAVSLDPNFLDAYINLGNVL 708
L + + V L ++L
Sbjct: 304 LVELTYAQNVEP----FAKEFGLQSML 326
Score = 94.7 bits (236), Expect = 3e-21
Identities = 16/112 (14%), Positives = 35/112 (31%), Gaps = 11/112 (9%)
Query: 599 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIE 658
G + + +Y + + + +++ ++ +A + +
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAAL-----------AFEAVCQ 49
Query: 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKE 710
P+ AW +LG + LAI A LDP + + L
Sbjct: 50 AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101
Score = 75.0 bits (185), Expect = 1e-14
Identities = 12/69 (17%), Positives = 18/69 (26%)
Query: 649 NPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708
N + Y + G + A FE P +A+ +LG
Sbjct: 6 NNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQ 65
Query: 709 KEARIFDRA 717
E A
Sbjct: 66 AENEKDGLA 74
Score = 45.7 bits (109), Expect = 3e-05
Identities = 6/52 (11%), Positives = 19/52 (36%)
Query: 248 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
G + + +Y + + + +++ ++ +A A+ Q P
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAP 52
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 170 bits (433), Expect = 2e-48
Identities = 61/279 (21%), Positives = 95/279 (34%), Gaps = 74/279 (26%)
Query: 32 MQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 91
MQ Q GV L + + D + A+K+NP EA L + G
Sbjct: 1 MQTAEQNPLRLGVQL------YALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGL 54
Query: 92 LQEALENYRHAVRLKPDFIDGYINLAAALVAA-----------GDMEQAVQAYVTALQYN 140
+ ALEN + V P ++ GY+ L+ A VA G +EQA+ A + N
Sbjct: 55 VNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN 114
Query: 141 PDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMK 200
P + G + LG D+A+
Sbjct: 115 PRYAPLHLQRGLVYALLGERDKAEASL--------------------------------- 141
Query: 201 VQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHA 260
+ A+ A++ E S L +Y G+L EAL Y A
Sbjct: 142 -KQAL--------------------ALEDT---PEIRSALAELYLSMGRLDEALAQYAKA 177
Query: 261 VRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+ P +D + A+AL+ G E+A +A ++
Sbjct: 178 LEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216
Score = 140 bits (356), Expect = 4e-38
Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 1/141 (0%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A+K+NP EA L + G + ALEN + V P ++ GY+ L+ A VA
Sbjct: 31 ALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQA 90
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + L+ S A P +A G V+ GE A ++A++L+
Sbjct: 91 EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT 150
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ L + D A
Sbjct: 151 P-EIRSALAELYLSMGRLDEA 170
Score = 128 bits (325), Expect = 6e-34
Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 23/152 (15%)
Query: 577 AIKQNPLLAEAYSNLGNVYKE-----------RGQLQEALENYRHAVRLKPDFIDGYINL 625
+ + P Y L Y +G L++AL + A R+ P + ++
Sbjct: 65 LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
G+ ++A + AL S L ++ + G + A+
Sbjct: 125 GLVYALLGERDKAEASLKQALALED------------TPEIRSALAELYLSMGRLDEALA 172
Query: 686 HFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+ KA+ P LD + + L + A
Sbjct: 173 QYAKALEQAPKDLDLRVRYASALLLKGKAEEA 204
Score = 125 bits (317), Expect = 8e-33
Identities = 22/144 (15%), Positives = 46/144 (31%), Gaps = 22/144 (15%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
+ LG G+ AL + A++ P + LA + G + A++
Sbjct: 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALE---- 60
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNA-----------QGEIWLAIHHFEKAVSL 693
+ P + + L + A +G + A+ + A +
Sbjct: 61 -------NGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV 113
Query: 694 DPNFLDAYINLGNVLKEARIFDRA 717
+P + ++ G V D+A
Sbjct: 114 NPRYAPLHLQRGLVYALLGERDKA 137
Score = 111 bits (279), Expect = 1e-27
Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 23/190 (12%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78
Y G Y++A + ++ + L L+ + ++ + + + P
Sbjct: 16 YALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGG 75
Query: 79 YSNLGNVYKE-----------RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
Y L Y +G L++AL + A R+ P + ++ G+ +
Sbjct: 76 YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERD 135
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNL 176
+A + AL +RS L L ++GRLDEA Y +R +
Sbjct: 136 KAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASA 194
Query: 177 LKALGRLDEA 186
L G+ +EA
Sbjct: 195 LLLKGKAEEA 204
Score = 110 bits (277), Expect = 1e-27
Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 12/120 (10%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A + NP A + G VY G+ +A + + A+ L+ + LA ++ G ++
Sbjct: 110 AERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTP-EIRSALAELYLSMGRLD 168
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+A+ Y KA+E P +G+ A +
Sbjct: 169 EALA-----------QYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217
Score = 57.9 bits (141), Expect = 1e-09
Identities = 12/57 (21%), Positives = 20/57 (35%)
Query: 661 PDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
LG A G A+ FE+A+ +P +A L + + + A
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPA 58
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 172 bits (438), Expect = 2e-47
Identities = 59/277 (21%), Positives = 91/277 (32%), Gaps = 61/277 (22%)
Query: 51 IHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 110
Q L + A++Q+P EA+ LG E Q A+ R + LKPD
Sbjct: 73 RRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ 132
Query: 111 DGYINLAAALVAAGDMEQAVQAYVTALQYNPD---------LYCVRSDLGNLLKALG--- 158
+ LA + QA + L+Y P + LG + LG
Sbjct: 133 TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192
Query: 159 ---RLDEAKDLY-------------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQ 202
E K+L+ V+ LG L G D+A
Sbjct: 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV--------------- 237
Query: 203 NAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR 262
F+ A+ P ++ LG Q +EA+ YR A+
Sbjct: 238 -----------------DCFTA-ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE 279
Query: 263 LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
L+P +I NL + + G +AV+ ++ AL
Sbjct: 280 LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316
Score = 148 bits (376), Expect = 4e-39
Identities = 56/290 (19%), Positives = 90/290 (31%), Gaps = 77/290 (26%)
Query: 12 LELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ 71
E R Q GD +A A++Q
Sbjct: 68 FEEGLRRLQEGDLPNAVLLFEA----------------------------------AVQQ 93
Query: 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 131
+P EA+ LG E Q A+ R + LKPD + LA + QA +
Sbjct: 94 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACE 153
Query: 132 AYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHT 191
L+Y P +L+ L + LG+LL E K L
Sbjct: 154 ILRDWLRYTPAYA-------HLVTPAEEGAGGAGLGPSKRILGSLLS-DSLFLEVKELFL 205
Query: 192 ENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNP--LLAEAYSNLGNVYKERGQ 249
A++ +P + + LG ++ G+
Sbjct: 206 A---------------------------------AVRLDPTSIDPDVQCGLGVLFNLSGE 232
Query: 250 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+A++ + A+ ++P+ + L A L E+AV AY AL+ P
Sbjct: 233 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282
Score = 135 bits (342), Expect = 1e-34
Identities = 41/185 (22%), Positives = 59/185 (31%), Gaps = 40/185 (21%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625
L + A++Q+P EA+ LG E Q A+ R + LKPD + L
Sbjct: 79 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMAL 138
Query: 626 AAALVAAGDMEQAVQAYVTALQYNP----------------------------------- 650
A + QA + L+Y P
Sbjct: 139 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFL 198
Query: 651 ---SCYLKAIETRPDF--AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLG 705
+L A+ P LG +FN GE A+ F A+S+ PN + LG
Sbjct: 199 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG 258
Query: 706 NVLKE 710
L
Sbjct: 259 ATLAN 263
Score = 130 bits (329), Expect = 5e-33
Identities = 40/232 (17%), Positives = 63/232 (27%), Gaps = 44/232 (18%)
Query: 71 QNPLL-AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
+NPL G + G L A+ + AV+ P ++ + L A
Sbjct: 58 ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNL 189
+ A L+ PD L +A ++ L
Sbjct: 118 ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEIL---------RDWL--------- 159
Query: 190 HTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 249
P Y L + LG++ +
Sbjct: 160 ---RYTP-----------AY--------AHLVTPAEEGAGGAGLGPSKRILGSLLSD-SL 196
Query: 250 LQEALENYRHAVRLKPDFID--GYINLAAALVAAGDMEQAVQAYVTALQYNP 299
E E + AVRL P ID L +G+ ++AV + AL P
Sbjct: 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 248
Score = 125 bits (315), Expect = 4e-31
Identities = 27/137 (19%), Positives = 57/137 (41%), Gaps = 13/137 (9%)
Query: 577 AIKQNP--LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
A++ +P + + LG ++ G+ +A++ + A+ ++P+ + L A L
Sbjct: 207 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ 266
Query: 635 MEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD 694
E+AV Y +A+E +P + + NLG G A+ HF +A+++
Sbjct: 267 SEEAVA-----------AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315
Query: 695 PNFLDAYINLGNVLKEA 711
G + +
Sbjct: 316 RKSRGPRGEGGAMSENI 332
Score = 113 bits (284), Expect = 4e-27
Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 28/158 (17%)
Query: 577 AIKQNPLLAEAYS---------NLGNVYKERGQL------QEALENYRHAVRLKPDFID- 620
++ P A + LG + G L E E + AVRL P ID
Sbjct: 158 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP 217
Query: 621 -GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE 679
L +G+ ++AV C+ A+ RP+ + W+ LG +
Sbjct: 218 DVQCGLGVLFNLSGEYDKAVD-----------CFTAALSVRPNDYLLWNKLGATLANGNQ 266
Query: 680 IWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A+ + +A+ L P ++ + NLG A
Sbjct: 267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 304
Score = 108 bits (271), Expect = 2e-25
Identities = 22/142 (15%), Positives = 38/142 (26%), Gaps = 12/142 (8%)
Query: 580 QNPLL-AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 638
+NPL G + G L A+ + AV+ P ++ + L A
Sbjct: 58 ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117
Query: 639 VQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL 698
+ + +E +PD A L F + A + P +
Sbjct: 118 IS-----------ALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA 166
Query: 699 DAYINLGNVLKEARIFDRANTL 720
A + L
Sbjct: 167 HLVTPAEEGAGGAGLGPSKRIL 188
Score = 107 bits (269), Expect = 3e-25
Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 2/136 (1%)
Query: 565 RKLDKS-AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623
+ DK+ F+ A+ P ++ LG Q +EA+ YR A+ L+P +I
Sbjct: 231 GEYDKAVDCFTA-ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 289
Query: 624 NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLA 683
NL + + G +AV+ ++ AL E WS L + G+
Sbjct: 290 NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349
Query: 684 IHHFEKAVSLDPNFLD 699
+ +S
Sbjct: 350 GAADARDLSTLLTMFG 365
Score = 94.7 bits (236), Expect = 7e-21
Identities = 22/157 (14%), Positives = 41/157 (26%), Gaps = 27/157 (17%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQL------------QEALENYRHAVRLKPD----FID 620
A + + L +E + Y + + +
Sbjct: 6 AKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHP 65
Query: 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEI 680
+ GD+ AV + A++ P AW LG +
Sbjct: 66 QPFEEGLRRLQEGDLPNAVL-----------LFEAAVQQDPKHMEAWQYLGTTQAENEQE 114
Query: 681 WLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
LAI + + L P+ A + L + +A
Sbjct: 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQA 151
Score = 45.4 bits (108), Expect = 6e-05
Identities = 13/99 (13%), Positives = 26/99 (26%), Gaps = 18/99 (18%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQL------------QEALENYRHAVRLKPD----FID 269
A + + L +E + Y + + +
Sbjct: 6 AKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHP 65
Query: 270 GYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWN 308
+ GD+ AV + A+Q +P K + W
Sbjct: 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDP--KHMEAWQ 102
Score = 31.5 bits (72), Expect = 1.3
Identities = 9/81 (11%), Positives = 17/81 (20%), Gaps = 16/81 (19%)
Query: 653 YLKAIETRPDFAVAWSNLGCVF------NAQGEIWL------AIHHFEKAVSLDPN---- 696
+ +A W L +A+ WL ++K +
Sbjct: 3 FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62
Query: 697 FLDAYINLGNVLKEARIFDRA 717
G + A
Sbjct: 63 DHPQPFEEGLRRLQEGDLPNA 83
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 166 bits (422), Expect = 2e-46
Identities = 45/239 (18%), Positives = 76/239 (31%), Gaps = 14/239 (5%)
Query: 67 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 126
+ A+ G +Y G A ++ A+ ++PD + + L L AG+
Sbjct: 34 SRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93
Query: 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGN 175
+ A +A+ + L+ +P + G L GR A+D L
Sbjct: 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL 153
Query: 176 LLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESA-HFSTLAIKQNPL 232
+ L + L K + IV Y G + T +E +T
Sbjct: 154 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 213
Query: 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291
L+E LG Y G L A ++ AV + L G + +
Sbjct: 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAES 272
Score = 130 bits (330), Expect = 6e-34
Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 11/135 (8%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
+ A+ G +Y G A ++ A+ ++PD + + L L AG+
Sbjct: 34 SRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP 695
+ A +A + +E P + A N G G LA DP
Sbjct: 94 DAAYEA-----------FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142
Query: 696 NFLDAYINLGNVLKE 710
N + L ++
Sbjct: 143 NDPFRSLWLYLAEQK 157
Score = 119 bits (301), Expect = 4e-30
Identities = 29/171 (16%), Positives = 53/171 (30%), Gaps = 27/171 (15%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A+ P + E ++ LG + G A E + + L P + ++N AL G +
Sbjct: 69 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDK 128
Query: 637 QAVQAYVTALQYNP--------------------------SCYLKAIETRPDFAVAWSNL 670
A + Q +P + K+ + + + + L
Sbjct: 129 LAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYL 188
Query: 671 GCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLF 721
G + + Q + SL + + LG D A LF
Sbjct: 189 GNI-SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 238
Score = 119 bits (300), Expect = 4e-30
Identities = 20/167 (11%), Positives = 45/167 (26%), Gaps = 27/167 (16%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
++ +P A+ N G G+ + A ++ + P+ + L A D +
Sbjct: 103 VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE-QKLDEK 161
Query: 637 QAVQAYVTALQYNPS--------------------------CYLKAIETRPDFAVAWSNL 670
QA + + + + L
Sbjct: 162 QAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYL 221
Query: 671 GCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
G + + G++ A F+ AV+ + + + L
Sbjct: 222 GKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDD 268
Score = 113 bits (284), Expect = 6e-28
Identities = 30/249 (12%), Positives = 60/249 (24%), Gaps = 51/249 (20%)
Query: 65 STLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 124
S + +++ +LA L ++ L + + + G
Sbjct: 1 SNTSWRKSEVLAVP---LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLG 57
Query: 125 DMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY-----------CVRSDL 173
A + AL PD+ V + LG L G D A + + +
Sbjct: 58 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 117
Query: 174 GNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLL 233
G L GR A++ + +P
Sbjct: 118 GIALYYGGRDKLAQDDLLA---------------------------------FYQDDPND 144
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLA---AALVAAGDMEQAVQA 290
L ++ + ++A E + G+ + + ME+
Sbjct: 145 PFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKAD 203
Query: 291 YVTALQYNP 299
Sbjct: 204 ATDNTSLAE 212
Score = 107 bits (270), Expect = 5e-26
Identities = 32/205 (15%), Positives = 54/205 (26%), Gaps = 48/205 (23%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD-- 125
++ +P A+ N G G+ + A ++ + P+ + L A +
Sbjct: 103 VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQ 162
Query: 126 -MEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDL 173
E Q + + + V LGN+ ++ K L
Sbjct: 163 AKEVLKQHFEKSDKEQWGWNIVEFYLGNI-SEQTLMERLKADATDNTSLAEHLSETNFYL 221
Query: 174 GNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLL 233
G +LG LD A A F LA+ N
Sbjct: 222 GKYYLSLGDLDSAT--------------------------------ALF-KLAVANNVHN 248
Query: 234 AEAYSNLGNVYKERGQLQEALENYR 258
+ GQ Q+ L
Sbjct: 249 FVEHRYALLELSLLGQDQDDLAESD 273
Score = 98.9 bits (247), Expect = 6e-23
Identities = 24/144 (16%), Positives = 44/144 (30%), Gaps = 14/144 (9%)
Query: 574 STLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 633
S + +++ +LA L ++ L + + + G
Sbjct: 1 SNTSWRKSEVLAVP---LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLG 57
Query: 634 DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693
A + +A+ RPD ++ LG G A F+ + L
Sbjct: 58 LRALARN-----------DFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 106
Query: 694 DPNFLDAYINLGNVLKEARIFDRA 717
DP + A++N G L A
Sbjct: 107 DPTYNYAHLNRGIALYYGGRDKLA 130
Score = 86.6 bits (215), Expect = 8e-19
Identities = 13/114 (11%), Positives = 33/114 (28%), Gaps = 12/114 (10%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
+ K+ LGN+ E+ ++ + L + L ++ GD+
Sbjct: 173 KSDKEQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL 231
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEK 689
+ A + + A+ V + G+ + ++
Sbjct: 232 DSAT-----------ALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
Score = 76.2 bits (188), Expect = 3e-15
Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 5/127 (3%)
Query: 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFST 66
L + +L ++ + + E+ + W V L +I Q +++ +T
Sbjct: 151 LYLAEQKLDEKQAKEVLKQHFEKSDKEQW----GWNIVEFYLGNISEQ-TLMERLKADAT 205
Query: 67 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 126
L+E LG Y G L A ++ AV + L G
Sbjct: 206 DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 265
Query: 127 EQAVQAY 133
+ +
Sbjct: 266 QDDLAES 272
Score = 75.4 bits (186), Expect = 4e-15
Identities = 13/77 (16%), Positives = 23/77 (29%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625
+++ +T L+E LG Y G L A ++ AV +
Sbjct: 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYA 255
Query: 626 AAALVAAGDMEQAVQAY 642
L G + +
Sbjct: 256 LLELSLLGQDQDDLAES 272
Score = 41.9 bits (99), Expect = 5e-04
Identities = 9/44 (20%), Positives = 13/44 (29%)
Query: 57 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYR 100
LD + LA+ N + GQ Q+ L
Sbjct: 230 DLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273
Score = 41.9 bits (99), Expect = 5e-04
Identities = 9/44 (20%), Positives = 13/44 (29%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYR 609
LD + LA+ N + GQ Q+ L
Sbjct: 230 DLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 166 bits (423), Expect = 2e-45
Identities = 45/232 (19%), Positives = 81/232 (34%), Gaps = 23/232 (9%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
E + LG GQL +AL + AV PD Y A +A G + A+
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC----VRSDLGNLLKALGRLDEAKNLHT 191
+ D R G+LL G+LDEA+D + +A +L +A +
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122
Query: 192 ENIKPVTM----KVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKER 247
+ + AI ++ AE + +
Sbjct: 123 LRSQALDAFDGADYTAAITF---------------LDKILEVCVWDAELRELRAECFIKE 167
Query: 248 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
G+ ++A+ + + A +LK D + + ++ GD E ++ L+ +
Sbjct: 168 GEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219
Score = 148 bits (377), Expect = 2e-39
Identities = 43/313 (13%), Positives = 99/313 (31%), Gaps = 70/313 (22%)
Query: 6 QLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIH------------- 52
Q G LL+ G + AE ++ + + S +
Sbjct: 76 QRGHLLLKQ-------GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQAL 128
Query: 53 --FQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 110
F + F ++ AE + + G+ ++A+ + + A +LK D
Sbjct: 129 DAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNT 188
Query: 111 DGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR 170
+ + ++ GD E ++ L+ + D + + K ++
Sbjct: 189 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES-------- 240
Query: 171 SDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQN 230
L GR +A + + +K
Sbjct: 241 ---AEELIRDGRYTDATSKYES---------------------------------VMKTE 264
Query: 231 PLLAE----AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 286
P +AE + + + + + + EA+ ++++PD ++ + A A + ++
Sbjct: 265 PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDE 324
Query: 287 AVQAYVTALQYNP 299
A+Q Y A ++N
Sbjct: 325 AIQDYEAAQEHNE 337
Score = 119 bits (300), Expect = 3e-29
Identities = 28/227 (12%), Positives = 70/227 (30%), Gaps = 42/227 (18%)
Query: 530 PNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYS 589
P+ A + + ++ F+ + F ++ AE
Sbjct: 102 PSEQEEKEAESQLVKADEMQRLRSQAL---DAFDGADYTAAITFLDKILEVCVWDAELRE 158
Query: 590 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 649
+ + G+ ++A+ + + A +LK D + + ++ GD E ++ L+ +
Sbjct: 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 218
Query: 650 P-----------------------------------SCYLKAIETRPDFAV----AWSNL 670
S Y ++T P A + +
Sbjct: 219 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERI 278
Query: 671 GCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
F+ + AI + + ++P+ ++A + ++D A
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEA 325
Score = 118 bits (299), Expect = 4e-29
Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 11/125 (8%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
E + LG GQL +AL + AV PD Y A +A G + A+
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALP---- 58
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
K I + DF A G + QG++ A F+K + +P+ +
Sbjct: 59 -------DLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE 111
Query: 705 GNVLK 709
++K
Sbjct: 112 SQLVK 116
Score = 113 bits (286), Expect = 2e-27
Identities = 24/145 (16%), Positives = 49/145 (33%), Gaps = 4/145 (2%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A+ +P AY V+ G+ + AL + + LK DF + L+ G ++
Sbjct: 29 AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLD 88
Query: 637 QAVQAYVTALQYNPSC----YLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
+A + L+ NPS ++ + D + + AI +K +
Sbjct: 89 EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 148
Query: 693 LDPNFLDAYINLGNVLKEARIFDRA 717
+ + + +A
Sbjct: 149 VCVWDAELRELRAECFIKEGEPRKA 173
Score = 107 bits (269), Expect = 3e-25
Identities = 21/160 (13%), Positives = 49/160 (30%), Gaps = 26/160 (16%)
Query: 577 AIKQNPLLAEAYSNLGNVYK---------------ERGQLQEALENYRHAVRLKPDFIDG 621
+K NP E + K + A+ + + +
Sbjct: 97 VLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL 156
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
A + G+ +A+ S A + + D A+ + ++ G+
Sbjct: 157 RELRAECFIKEGEPRKAI-----------SDLKAASKLKSDNTEAFYKISTLYYQLGDHE 205
Query: 682 LAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLF 721
L++ + + LD + + + V K ++ + A L
Sbjct: 206 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 245
Score = 97.7 bits (244), Expect = 5e-22
Identities = 15/150 (10%), Positives = 39/150 (26%), Gaps = 27/150 (18%)
Query: 577 AIKQNPLLAEAYSNL------------GNVYKERGQLQEALENYRHAVRLKPDFID---- 620
+K + +++ G+ +A Y ++ +P +
Sbjct: 214 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVR 273
Query: 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEI 680
+ +A++ + ++ PD A + + +
Sbjct: 274 SKERICHCFSKDEKPVEAIR-----------ICSEVLQMEPDNVNALKDRAEAYLIEEMY 322
Query: 681 WLAIHHFEKAVSLDPNFLDAYINLGNVLKE 710
AI +E A + N L +
Sbjct: 323 DEAIQDYEAAQEHNENDQQIREGLEKAQRL 352
Score = 87.3 bits (217), Expect = 1e-18
Identities = 24/160 (15%), Positives = 61/160 (38%), Gaps = 16/160 (10%)
Query: 19 YQAGDYESAERHCMQ------------LWRQETNNTGVLLLLSSIHFQCRKLDKSAHFST 66
YQ GD+E + + ++ L+ + + + +
Sbjct: 199 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 258
Query: 67 LAIKQNPLLAE----AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 122
+K P +AE + + + + + + EA+ ++++PD ++ + A A +
Sbjct: 259 SVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318
Query: 123 AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDE 162
++A+Q Y A ++N + +R L + L + +
Sbjct: 319 EEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQK 358
Score = 83.1 bits (206), Expect = 4e-17
Identities = 29/251 (11%), Positives = 63/251 (25%), Gaps = 74/251 (29%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKS-AHFSTLAIKQNPLLAE 77
+ G+ A + +++NT +S++++Q + S + +K +
Sbjct: 165 IKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRE-CLKLDQDHKR 223
Query: 78 AYSNL------------GNVYKERGQLQEALENYRHAVRLKPDFID----GYINLAAALV 121
+++ G+ +A Y ++ +P + +
Sbjct: 224 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS 283
Query: 122 AAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALG 181
+A++ LQ PD AL D
Sbjct: 284 KDEKPVEAIRICSEVLQMEPDNV----------NAL-------------KDRAEAYLIEE 320
Query: 182 RLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLG 241
DEA + +Y A + N + L
Sbjct: 321 MYDEA-------------------IQDY--------------EAAQEHNENDQQIREGLE 347
Query: 242 NVYKERGQLQE 252
+ Q Q+
Sbjct: 348 KAQRLLKQSQK 358
Score = 80.0 bits (198), Expect = 4e-16
Identities = 16/106 (15%), Positives = 37/106 (34%), Gaps = 15/106 (14%)
Query: 577 AIKQNPLLAE----AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 632
+K P +AE + + + + + + EA+ ++++PD ++ + A A +
Sbjct: 260 VMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIE 319
Query: 633 GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG 678
++A+Q Y A E + L
Sbjct: 320 EMYDEAIQ-----------DYEAAQEHNENDQQIREGLEKAQRLLK 354
Score = 29.9 bits (68), Expect = 4.2
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQE 603
A + N + L + Q Q+
Sbjct: 332 AQEHNENDQQIREGLEKAQRLLKQSQK 358
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 162 bits (412), Expect = 2e-45
Identities = 49/257 (19%), Positives = 82/257 (31%), Gaps = 48/257 (18%)
Query: 58 LDKSAHFSTLAIKQNPLLAEAYSNLGNVY----KERGQLQEALENYRHAVRLKPDFIDGY 113
+ S H + P + S G E G ++A E + A+ + Y
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 114 INLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY--CVRS 171
IN A L + ++E+A+ Y AL+ + GN+ EAKD++ +R+
Sbjct: 61 INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120
Query: 172 D---------LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHF 222
LG +L L + A ++
Sbjct: 121 GMENGDLFYMLGTVLVKLEQPKLALP-------------------YL--QR--------- 150
Query: 223 STLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 282
A++ N EA G G L EAL + P D + N
Sbjct: 151 ---AVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKE 207
Query: 283 DMEQAVQAYVTALQYNP 299
+ E+A++ A+ P
Sbjct: 208 NREKALEMLDKAIDIQP 224
Score = 144 bits (367), Expect = 3e-39
Identities = 47/270 (17%), Positives = 85/270 (31%), Gaps = 56/270 (20%)
Query: 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP 73
R + GDYE A + + + + +++ +L+++ F A++ +
Sbjct: 29 QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS 88
Query: 74 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 133
A AY GNVY + +EA + + A+R + D + L LV + A+
Sbjct: 89 SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYL 148
Query: 134 VTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTEN 193
A++ N + R G L G LDEA +
Sbjct: 149 QRAVELNENDTEARFQFGMCLANEGMLDEALSQF---------AAVT------------E 187
Query: 194 IKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 253
P + A+A+ N G Y + ++A
Sbjct: 188 QDP-----------GH------------------------ADAFYNAGVTYAYKENREKA 212
Query: 254 LENYRHAVRLKPDFIDGYINLAAALVAAGD 283
LE A+ ++PD +
Sbjct: 213 LEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
Score = 138 bits (349), Expect = 7e-37
Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++ + A AY GNVY + +EA + + A+R + D + L LV +
Sbjct: 83 ALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPK 142
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
A+ +A+E + A G +G + A+ F DP
Sbjct: 143 LALP-----------YLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191
Query: 697 FLDAYINLGNVLKEARIFDRA 717
DA+ N G ++A
Sbjct: 192 HADAFYNAGVTYAYKENREKA 212
Score = 136 bits (344), Expect = 4e-36
Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 11/156 (7%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
E +K+A T AI++N A Y N N+ +L+ AL Y A+ L
Sbjct: 34 SEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATA 93
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
Y V ++A + KA+ + + LG V +
Sbjct: 94 YYGAGNVYVVKEMYKEAKD-----------MFEKALRAGMENGDLFYMLGTVLVKLEQPK 142
Query: 682 LAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
LA+ + ++AV L+ N +A G L + D A
Sbjct: 143 LALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178
Score = 136 bits (344), Expect = 4e-36
Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 11/134 (8%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++ + + LG V + Q + AL + AV L + + L G ++
Sbjct: 117 ALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+A+ + E P A A+ N G + + A+ +KA+ + P+
Sbjct: 177 EALS-----------QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225
Query: 697 FLDAYINLGNVLKE 710
+ A +
Sbjct: 226 HMLALHAKKLLGHH 239
Score = 124 bits (314), Expect = 4e-32
Identities = 36/155 (23%), Positives = 56/155 (36%), Gaps = 15/155 (9%)
Query: 567 LDKSAHFSTLAIKQNPLLAEAYSNLGNVY----KERGQLQEALENYRHAVRLKPDFIDGY 622
+ S H + P + S G E G ++A E + A+ + Y
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL 682
IN A L + ++E+A+ Y KA+E A A+ G V+ +
Sbjct: 61 INFANLLSSVNELERALA-----------FYDKALELDSSAATAYYGAGNVYVVKEMYKE 109
Query: 683 AIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A FEKA+ D + LG VL + A
Sbjct: 110 AKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLA 144
Score = 101 bits (253), Expect = 5e-24
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 11/103 (10%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++ N EA G G L EAL + P D + N + E
Sbjct: 151 AVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENRE 210
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE 679
+A++ KAI+ +PD +A + +
Sbjct: 211 KALE-----------MLDKAIDIQPDHMLALHAKKLLGHHHHH 242
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 159 bits (405), Expect = 2e-44
Identities = 36/245 (14%), Positives = 71/245 (28%), Gaps = 46/245 (18%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
K +AY LG Y +RG ++A R A+ + P D + LA + +
Sbjct: 29 TDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPK 88
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY------CVRSD-------LG 174
A + Y AL + V ++ G L R +EA + + LG
Sbjct: 89 LADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLG 148
Query: 175 NLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLA 234
+ + + +AK +F +++ N
Sbjct: 149 LVSLQMKKPAQAK--------------------------------EYFEK-SLRLNRNQP 175
Query: 235 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 294
+ ++ + + A + Y + + D + A +
Sbjct: 176 SVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235
Query: 295 LQYNP 299
+ P
Sbjct: 236 KRLYP 240
Score = 132 bits (335), Expect = 6e-35
Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 9/141 (6%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++ +P A+A++ L V++ + + A E YR A+ N L E
Sbjct: 63 ALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYE 122
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+A Q + A P+ + + NLG V + A +FEK++ L+ N
Sbjct: 123 EAYQRLLEAS---------QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN 173
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ + ++L + R + A
Sbjct: 174 QPSVALEMADLLYKEREYVPA 194
Score = 126 bits (318), Expect = 1e-32
Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 13/143 (9%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
K +AY LG Y +RG ++A R A+ + P D + LA + +
Sbjct: 29 TDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPK 88
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV--SLD 694
A + Y KA+ + A +N G Q A +A +L
Sbjct: 89 LADE-----------EYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY 137
Query: 695 PNFLDAYINLGNVLKEARIFDRA 717
P + NLG V + + +A
Sbjct: 138 PERSRVFENLGLVSLQMKKPAQA 160
Score = 119 bits (300), Expect = 3e-30
Identities = 20/147 (13%), Positives = 46/147 (31%), Gaps = 13/147 (8%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR--LKPDFIDGYINLAAALVAAGD 634
A+ + A +N G E+ + +EA + A + L P+ + NL +
Sbjct: 97 ALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK 156
Query: 635 MEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD 694
QA + + K++ + + + + E A +++
Sbjct: 157 PAQAKEYF-----------EKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG 205
Query: 695 PNFLDAYINLGNVLKEARIFDRANTLF 721
+ + + K D A +
Sbjct: 206 GQNARSLLLGIRLAKVFEDRDTAASYG 232
Score = 113 bits (284), Expect = 4e-28
Identities = 34/267 (12%), Positives = 73/267 (27%), Gaps = 67/267 (25%)
Query: 6 QLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKS-AHF 64
QLG+G L+ G+ E A+ + + ++ L+ + + + +
Sbjct: 42 QLGLGYLQR-------GNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEY 94
Query: 65 STLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR--LKPDFIDGYINLAAALVA 122
A+ + A +N G E+ + +EA + A + L P+ + NL +
Sbjct: 95 RK-ALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ 153
Query: 123 AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGR 182
QA + + +L+ N + ++ +LL
Sbjct: 154 MKKPAQAKEYFEKSLRLNRNQP----------SVA-------------LEMADLLYKERE 190
Query: 183 LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242
A+ + + A +
Sbjct: 191 YVPARQYYDL---------------------------------FAQGGGQNARSLLLGIR 217
Query: 243 VYKERGQLQEALENYRHAVRLKPDFID 269
+ K A RL P ++
Sbjct: 218 LAKVFEDRDTAASYGLQLKRLYPGSLE 244
Score = 103 bits (260), Expect = 6e-25
Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 14/137 (10%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
+ + G V + +N + + + D YI L + G+ EQA
Sbjct: 6 HHHHHSSGLVPRGSHM---GDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKV---- 58
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
KA+E P A A + L VF + E LA + KA++ D N
Sbjct: 59 -------PLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY 111
Query: 705 GNVLKEARIFDRANTLF 721
G L E + ++ A
Sbjct: 112 GGFLYEQKRYEEAYQRL 128
Score = 96.6 bits (241), Expect = 2e-22
Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 11/125 (8%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
P + + NLG V + + +A E + ++RL + + +A L +
Sbjct: 132 SQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY 191
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP 695
A Q Y + A + + + A + + L P
Sbjct: 192 VPARQ-----------YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240
Query: 696 NFLDA 700
L+
Sbjct: 241 GSLEY 245
Score = 84.6 bits (210), Expect = 3e-18
Identities = 25/159 (15%), Positives = 49/159 (30%), Gaps = 34/159 (21%)
Query: 139 YNPDLYCVRSDLGNLLKALGRLDEAK-DLYCVRSDLGNLLKALGRLDEAKNLHTENIKPV 197
++ V + + D+ + + LG G ++AK ++
Sbjct: 8 HHHSSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAK----VPLR-- 61
Query: 198 TMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENY 257
A++ +P A+A++ L V++ + + A E Y
Sbjct: 62 ---------------------------KALEIDPSSADAHAALAVVFQTEMEPKLADEEY 94
Query: 258 RHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
R A+ N L E+A Q + A Q
Sbjct: 95 RKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133
Score = 45.7 bits (109), Expect = 3e-05
Identities = 8/59 (13%), Positives = 18/59 (30%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 620
++ R+ + + L + A + + K A RL P ++
Sbjct: 186 YKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 166 bits (422), Expect = 5e-44
Identities = 71/494 (14%), Positives = 155/494 (31%), Gaps = 68/494 (13%)
Query: 229 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 288
+ A A + GN + + +A++ Y A+ LK D + Y NL+A V+ GD+++ V
Sbjct: 1 EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVV 59
Query: 289 QAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVMMKRPVLGLASAIESISA 347
+ AL+ P D+ K L RR A + + A A+ +S
Sbjct: 60 EMSTKALELKP---------------DYS--KVLLRRASANEGLGK----FADAMFDLSV 98
Query: 348 NQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVE-PNGKILIPHIYKDVEP 406
+++ + + L +AM+ L G + +
Sbjct: 99 ------LSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK 152
Query: 407 LGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGG 466
+ F+ + ++++ + +L E
Sbjct: 153 DKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMN-GLSNLYKRSPESYDKADES 211
Query: 467 KTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTN 526
T K F ++ N + +++ + L + N D K+
Sbjct: 212 FT----KAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF 267
Query: 527 PEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAE 586
P +Y+ A + + ++ A+K + +
Sbjct: 268 PRVNSYIY--MALIM--------------------ADRNDSTEYYNYFDKALKLDSNNSS 305
Query: 587 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 646
Y + G + +A +++ A L P+ I YI LA +
Sbjct: 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCET------ 359
Query: 647 QYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGN 706
+ +A P+ + + + + A+ ++ A+ L+ Y+ +
Sbjct: 360 -----LFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAP 414
Query: 707 VLKEARIFDRANTL 720
++ +A + R T+
Sbjct: 415 LVGKATLLTRNPTV 428
Score = 144 bits (364), Expect = 1e-36
Identities = 38/298 (12%), Positives = 80/298 (26%), Gaps = 54/298 (18%)
Query: 22 GDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSN 81
+E + + + L F + AI+ P +Y
Sbjct: 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIY 275
Query: 82 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 141
+ + +R E + A++L + Y + + +QA + + A + +P
Sbjct: 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335
Query: 142 DLYCVRSDLGNLLKALGRLDEAKDLY-----------CVRSDLGNLLKALGRLDEAKNLH 190
+ L L + D+ + L+ V + +L D+A +
Sbjct: 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395
Query: 191 TENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKER--- 247
AI+ L Y + + +
Sbjct: 396 DL---------------------------------AIELENKLDGIYVGIAPLVGKATLL 422
Query: 248 ------GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
EA A +L P I LA + D+++A+ + +
Sbjct: 423 TRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480
Score = 142 bits (361), Expect = 4e-36
Identities = 37/273 (13%), Positives = 84/273 (30%), Gaps = 16/273 (5%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78
+ D A + + ++ I + ++ A+K + +
Sbjct: 248 FLKNDPLGAHEDIKKAIELFPRVN-SYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV 306
Query: 79 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 138
Y + G + +A +++ A L P+ I YI LA + + A +
Sbjct: 307 YYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR 366
Query: 139 YNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVT 198
P+ V + +L D+A Y A+ ++ ++ I P+
Sbjct: 367 KFPEAPEVPNFFAEILTDKNDFDKALKQY---------DLAIELENKLDGIYV-GIAPLV 416
Query: 199 MKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYR 258
K A K +P +A L + ++ + EA+ +
Sbjct: 417 GKATLLTRNPTVENFIEATNLL---EKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473
Query: 259 HAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291
+ L + + A ++Q +++
Sbjct: 474 ESADLARTMEEKLQAI--TFAEAAKVQQRIRSD 504
Score = 121 bits (305), Expect = 6e-29
Identities = 46/262 (17%), Positives = 88/262 (33%), Gaps = 21/262 (8%)
Query: 51 IHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 110
F+ +K D + + A++ YSNL Y G L++ +E A+ LKPD+
Sbjct: 15 QFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYS 73
Query: 111 DGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR 170
+ A+A G A+ + L N D + ++ L R + + ++
Sbjct: 74 KVLLRRASANEGLGKFADAMFDL-SVLSLNGDF-----NDASIEPMLERNLNKQAMSKLK 127
Query: 171 SDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNA-IVCNYGGRKPTTLESAHFSTLAIKQ 229
G++ A E + K + + + ++ G L A++ + +
Sbjct: 128 EKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDE-SNEA 186
Query: 230 NPLLAEAYSNLGNVY------------KERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277
+ L SNL K +E L+ +LK +
Sbjct: 187 DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246
Query: 278 LVAAGDMEQAVQAYVTALQYNP 299
D A + A++ P
Sbjct: 247 KFLKNDPLGAHEDIKKAIELFP 268
Score = 121 bits (304), Expect = 7e-29
Identities = 44/297 (14%), Positives = 97/297 (32%), Gaps = 12/297 (4%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
L + ++ ++ Y+ A ++ + + LS+ + L K ST A++
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF----IDGYINLAAALVAAGDM 126
P ++ + + G+ +A+ + + L DF I+ + A +
Sbjct: 68 LKPDYSKVLLRRASANEGLGKFADAMFDLS-VLSLNGDFNDASIEPMLERNLNKQAMSKL 126
Query: 127 EQAVQAYVTALQYNPDL----YCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGR 182
++ TA +L R D L ++ + ++ N ++
Sbjct: 127 KEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEA 186
Query: 183 LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242
E N + K A + + + K LA + + G
Sbjct: 187 DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE-DEKLKEKLAISLEHTGI 245
Query: 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+ A E+ + A+ L P + YI +A + D + + AL+ +
Sbjct: 246 FKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDSTEYYNYFDKALKLDS 301
Score = 114 bits (287), Expect = 1e-26
Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 12/157 (7%)
Query: 565 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 624
R ++ + K LA + + G + A E+ + A+ L P + YI
Sbjct: 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIY 275
Query: 625 LAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAI 684
+A + D + + KA++ + + + + G + A
Sbjct: 276 MALIMADRNDSTEYYN-----------YFDKALKLDSNNSSVYYHRGQMNFILQNYDQAG 324
Query: 685 HHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLF 721
F+KA LDP + YI L + FD TLF
Sbjct: 325 KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLF 361
Score = 113 bits (284), Expect = 3e-26
Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 8/143 (5%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A ++ P E + + ++ +AL+ Y A+ L+ Y+ +A + A +
Sbjct: 364 AKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT 423
Query: 637 Q--AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD 694
+ V+ ++ A KA + P A L + Q +I AI FE++ L
Sbjct: 424 RNPTVENFIEATN----LLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479
Query: 695 PNFLDAYINLGNVLKEARIFDRA 717
+ + EA +
Sbjct: 480 RTMEEKLQAIT--FAEAAKVQQR 500
Score = 112 bits (282), Expect = 4e-26
Identities = 30/154 (19%), Positives = 48/154 (31%), Gaps = 20/154 (12%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A + +P Y L + + + + A R P+ + A L D +
Sbjct: 330 AKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFD 389
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFN---------AQGEIWLAIHHF 687
+A++ Y AIE + + + A +
Sbjct: 390 KALK-----------QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438
Query: 688 EKAVSLDPNFLDAYINLGNVLKEARIFDRANTLF 721
EKA LDP A I L + + D A TLF
Sbjct: 439 EKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472
Score = 108 bits (271), Expect = 9e-25
Identities = 46/240 (19%), Positives = 86/240 (35%), Gaps = 12/240 (5%)
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
+ A A + GN + + +A++ Y A+ LK D + Y NL+A V+ GD+++ V
Sbjct: 1 EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVV 59
Query: 131 QAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLH 190
+ AL+ PD V + + LG+ +A V S G+ A +NL+
Sbjct: 60 EMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLN 119
Query: 191 TENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 250
+ + K++ T S + + L + +
Sbjct: 120 KQAMS----KLKEKFGDIDTATATPTELSTQPAKERKDKQENL--PSVTSMASFFGIFKP 173
Query: 251 QEALENYRHAVRLKPDFIDGYINLAAALV-----AAGDMEQAVQAYVTALQYNPLLKKED 305
+ NY + + ++G NL A +A + + L N +K
Sbjct: 174 ELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK 233
Score = 105 bits (264), Expect = 8e-24
Identities = 29/277 (10%), Positives = 62/277 (22%), Gaps = 57/277 (20%)
Query: 54 QCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 113
+++ + + + NY + + ++G
Sbjct: 135 TATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194
Query: 114 INLAAALV------------AAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLD 161
NL AA E+ + + L G
Sbjct: 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL 254
Query: 162 EAKDLY----------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG 211
A + + ++ E N +
Sbjct: 255 GAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDK------------------- 295
Query: 212 RKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 271
A+K + + Y + G + +A +++ A L P+ I Y
Sbjct: 296 --------------ALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPY 341
Query: 272 INLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWN 308
I LA + + A + P + + N
Sbjct: 342 IQLACLAYRENKFDDCETLFSEAKRKFP--EAPEVPN 376
Score = 93.7 bits (233), Expect = 4e-20
Identities = 35/227 (15%), Positives = 72/227 (31%), Gaps = 9/227 (3%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
F +K D + + A++ YSNL Y G L++ +E A+ LKPD+
Sbjct: 17 FRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKV 75
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
+ A+A G A+ + L N + A ++
Sbjct: 76 LLRRASANEGLGKFADAMFDL-SVLSLNG-------DFNDASIEPMLERNLNKQAMSKLK 127
Query: 682 LAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERC 741
+ A + +E + F+ +T + D E
Sbjct: 128 EKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEAD 187
Query: 742 EAKTEELNKKFEQLGESSLRDFTLDAPTQSVYKFEGEDYREKQKIVP 788
+ L+ +++ ES + +++ + + E +K+
Sbjct: 188 KELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE 234
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 155 bits (395), Expect = 1e-43
Identities = 33/231 (14%), Positives = 71/231 (30%), Gaps = 56/231 (24%)
Query: 69 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 128
+ + + Y + G + + G+ +A+ +D ++L A V G +++
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60
Query: 129 AVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKN 188
+ +L PD V + LG + + D A L +K
Sbjct: 61 GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLL---------IKVA-------- 103
Query: 189 LHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERG 248
P LG G
Sbjct: 104 ----EANP-----------IN------------------------FNVRFRLGVALDNLG 124
Query: 249 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+ EA+++++ A+ L+P+ + +A + G E+A+ + A + +
Sbjct: 125 RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175
Score = 141 bits (357), Expect = 1e-38
Identities = 25/141 (17%), Positives = 43/141 (30%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
+ + +LG Y + G + E ++ PD + L V +
Sbjct: 34 VYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYD 93
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
AV +K E P LG + G AI F+ A+ L PN
Sbjct: 94 LAVP-----------LLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ + ++ + A
Sbjct: 143 EGKVHRAIAFSYEQMGRHEEA 163
Score = 138 bits (351), Expect = 9e-38
Identities = 39/239 (16%), Positives = 71/239 (29%), Gaps = 65/239 (27%)
Query: 40 NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENY 99
+ G+ + + ++ + + +LG Y + G + E
Sbjct: 12 RDKGISH------AKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELL 65
Query: 100 RHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGR 159
++ PD + L V + AV + + NP + VR LG L LGR
Sbjct: 66 ERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR 125
Query: 160 LDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLES 219
DEA D + AL ++P N
Sbjct: 126 FDEAIDSF---------KIAL------------GLRP-----------NE---------- 143
Query: 220 AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 278
+ + + Y++ G+ +EAL +++ A L + LA
Sbjct: 144 --------------GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA---SVELALVP 185
Score = 133 bits (338), Expect = 5e-36
Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 11/140 (7%)
Query: 578 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 637
+ + + Y + G + + G+ +A+ +D ++L A V G +++
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60
Query: 638 AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697
+ +++ PD + LG + + LA+ K +P
Sbjct: 61 GTE-----------LLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109
Query: 698 LDAYINLGNVLKEARIFDRA 717
+ LG L FD A
Sbjct: 110 FNVRFRLGVALDNLGRFDEA 129
Score = 131 bits (331), Expect = 4e-35
Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 14/133 (10%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
++ P + + LG Y + + A+ P + L AL G +
Sbjct: 68 SLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFD 127
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+A+ + A+ RP+ + + G A+ HF+KA LD
Sbjct: 128 EAID-----------SFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176
Query: 697 FLDAYINLGNVLK 709
+ L V +
Sbjct: 177 A---SVELALVPR 186
Score = 90.6 bits (226), Expect = 5e-21
Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
+ NP+ LG G+ EA+++++ A+ L+P+ + +A + G E
Sbjct: 102 VAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHE 161
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLK 155
+A+ + A + + +L + +
Sbjct: 162 EALPHFKKANELDEGAS---VELALVPR 186
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 159 bits (403), Expect = 5e-42
Identities = 51/233 (21%), Positives = 88/233 (37%), Gaps = 11/233 (4%)
Query: 69 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 128
Q+ E + LG GQL +AL + AV PD Y A +A G +
Sbjct: 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKA 78
Query: 129 AVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKN 188
A+ +Q D R G+LL G+LDEA D +LK+ +E K
Sbjct: 79 ALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEA------EDDFKKVLKSNPSENEEKE 132
Query: 189 LHTENIKPVTMK--VQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE 246
++ IK M+ A+ G + ++ AE + +
Sbjct: 133 AQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL---DKILEVCVWDAELRELRAECFIK 189
Query: 247 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
G+ ++A+ + + A +LK D + + ++ GD E ++ L+ +
Sbjct: 190 EGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242
Score = 136 bits (345), Expect = 2e-34
Identities = 41/302 (13%), Positives = 97/302 (32%), Gaps = 33/302 (10%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78
G ++A ++ + + + T L + + KLD++ +K NP E
Sbjct: 71 LAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEE 130
Query: 79 YS---------------NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 123
+ G A+ + + + A +
Sbjct: 131 KEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKE 190
Query: 124 GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY--CVRSDLGNLLKALG 181
G+ +A+ A + D + L LG + + C++ D +
Sbjct: 191 GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH------ 244
Query: 182 RLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNP----LLAEAY 237
+ + +K + +++A GR +K P +
Sbjct: 245 --KRCFAHY-KQVKKLNKLIESAEELIRDGRYTDATSKY---ESVMKTEPSIAEYTVRSK 298
Query: 238 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 297
+ + + + + EA+ ++++PD ++ + A A + ++A+Q Y TA ++
Sbjct: 299 ERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358
Query: 298 NP 299
N
Sbjct: 359 NE 360
Score = 132 bits (335), Expect = 4e-33
Identities = 41/299 (13%), Positives = 94/299 (31%), Gaps = 9/299 (3%)
Query: 4 IAQLGIGLLELAHREYQAG---DYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDK 60
L G L+ A +++ + E Q +++ L + F
Sbjct: 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA 161
Query: 61 SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 120
+ F ++ AE + + G+ ++A+ + + A +LK D + + ++
Sbjct: 162 AIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLY 221
Query: 121 VAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKAL 180
GD E ++ L+ + D + + K ++ A++L G A
Sbjct: 222 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI----RDGRYTDAT 277
Query: 181 GRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNL 240
+ + + + C KP E+ + ++ P A +
Sbjct: 278 SKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPV--EAIRVCSEVLQMEPDNVNALKDR 335
Query: 241 GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
Y EA+++Y A + L A ++ + ++ N
Sbjct: 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394
Score = 111 bits (280), Expect = 4e-26
Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 11/141 (7%)
Query: 578 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 637
Q+ E + LG GQL +AL + AV PD Y A +A G +
Sbjct: 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKA 78
Query: 638 AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697
A+ K I+ + DF A G + QG++ A F+K + +P+
Sbjct: 79 ALP-----------DLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 127
Query: 698 LDAYINLGNVLKEARIFDRAN 718
+ ++K + +
Sbjct: 128 NEEKEAQSQLIKSDEMQRLRS 148
Score = 111 bits (280), Expect = 4e-26
Identities = 26/195 (13%), Positives = 62/195 (31%), Gaps = 39/195 (20%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
F + F ++ AE + + G+ ++A+ + + A +LK D +
Sbjct: 154 FGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA 213
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNP------------------------------- 650
+ ++ GD E ++ L+ +
Sbjct: 214 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 273
Query: 651 ----SCYLKAIETRPDFA----VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYI 702
S Y ++T P A + + F+ + AI + + ++P+ ++A
Sbjct: 274 TDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333
Query: 703 NLGNVLKEARIFDRA 717
+ ++D A
Sbjct: 334 DRAEAYLIEEMYDEA 348
Score = 111 bits (279), Expect = 5e-26
Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 4/147 (2%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
A+ +P AY V+ G+ + AL + ++LK DF + L+ G
Sbjct: 50 HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK 109
Query: 635 MEQAVQAYVTALQYNPSC----YLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKA 690
+++A + L+ NPS ++ + D + G+ AI +K
Sbjct: 110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169
Query: 691 VSLDPNFLDAYINLGNVLKEARIFDRA 717
+ + + + +A
Sbjct: 170 LEVCVWDAELRELRAECFIKEGEPRKA 196
Score = 102 bits (257), Expect = 4e-23
Identities = 17/154 (11%), Positives = 47/154 (30%), Gaps = 11/154 (7%)
Query: 568 DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 627
++ + + + G A+ + + + A
Sbjct: 126 SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE 185
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687
+ G+ +A+ S A + + D A+ + ++ G+ L++
Sbjct: 186 CFIKEGEPRKAI-----------SDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234
Query: 688 EKAVSLDPNFLDAYINLGNVLKEARIFDRANTLF 721
+ + LD + + + V K ++ + A L
Sbjct: 235 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 268
Score = 99.8 bits (249), Expect = 3e-22
Identities = 45/332 (13%), Positives = 85/332 (25%), Gaps = 78/332 (23%)
Query: 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHF 64
+ L A + +GDY +A ++ + + L + + + K+
Sbjct: 140 SDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 199
Query: 65 STLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF------------IDG 112
A K EA+ + +Y + G + +L R ++L D ++
Sbjct: 200 LKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259
Query: 113 YINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDL----GNLLKALGRLDEAKDLYC 168
I A L+ G A Y + ++ P + + + EA +
Sbjct: 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319
Query: 169 -----------VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTL 217
D DEA +
Sbjct: 320 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET------------------------- 354
Query: 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ-----------------LQEALENYRH- 259
A + N + L + Q QE ++ YR
Sbjct: 355 --------AQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406
Query: 260 AVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291
A++ PD A D+ A +
Sbjct: 407 ALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVL 438
Score = 88.6 bits (220), Expect = 1e-18
Identities = 20/183 (10%), Positives = 51/183 (27%), Gaps = 24/183 (13%)
Query: 530 PNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNP----LLA 585
++ K V + + + + +K P
Sbjct: 242 QDHKRCFAHYKQVKKLNKLIES------AEELIRDGRYTDATSKYESVMKTEPSIAEYTV 295
Query: 586 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 645
+ + + + + + EA+ ++++PD ++ + A A + ++A+Q
Sbjct: 296 RSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ----- 350
Query: 646 LQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD---AYI 702
Y A E + L + ++ V + + AY
Sbjct: 351 ------DYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYR 404
Query: 703 NLG 705
L
Sbjct: 405 KLA 407
Score = 86.7 bits (215), Expect = 5e-18
Identities = 17/158 (10%), Positives = 44/158 (27%), Gaps = 27/158 (17%)
Query: 577 AIKQNPLLAEAYSNLGNVYK------------ERGQLQEALENYRHAVRLKPDFID---- 620
+K + +++ V K G+ +A Y ++ +P +
Sbjct: 237 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVR 296
Query: 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEI 680
+ +A++ + ++ PD A + + +
Sbjct: 297 SKERICHCFSKDEKPVEAIR-----------VCSEVLQMEPDNVNALKDRAEAYLIEEMY 345
Query: 681 WLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRAN 718
AI +E A + N L + + + +
Sbjct: 346 DEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRD 383
Score = 66.6 bits (163), Expect = 1e-11
Identities = 17/122 (13%), Positives = 35/122 (28%), Gaps = 7/122 (5%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625
K ++ + ++ P A + Y EA+++Y A + L
Sbjct: 310 KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL 369
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPS------CYLK-AIETRPDFAVAWSNLGCVFNAQG 678
A ++ + ++ N Y K A++ PD
Sbjct: 370 EKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFI 429
Query: 679 EI 680
+I
Sbjct: 430 DI 431
Score = 47.4 bits (113), Expect = 1e-05
Identities = 16/100 (16%), Positives = 24/100 (24%), Gaps = 22/100 (22%)
Query: 618 FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQ 677
+ + L Q++ LG A
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMADVE----------------------KHLELGKKLLAA 39
Query: 678 GEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
G++ A+ F AV DP+ AY V A
Sbjct: 40 GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA 79
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase,
SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A
{Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13
a.187.1.1 PDB: 2nog_A
Length = 304
Score = 155 bits (392), Expect = 5e-42
Identities = 93/107 (86%), Positives = 100/107 (93%)
Query: 797 KRERKANYAVDAYFKEALRTSEPKAPKAPRPPKQPIVQDFQFFPPRLFEILDQEIYYFRK 856
ERKANYAVDAYF+EALR SEPKAPKAPRPPKQPIVQDFQFFPPRLFE+LDQEIYYFRK
Sbjct: 2 AMERKANYAVDAYFREALRVSEPKAPKAPRPPKQPIVQDFQFFPPRLFELLDQEIYYFRK 61
Query: 857 TVGYKVPKNPELGSDATKAQKEEQKKIDESEPLTEEELAEKEELLTQ 903
TVGYKVPKN ELGSDATK Q+EEQ+KIDE+EPLTEEE+ EKE LL+Q
Sbjct: 62 TVGYKVPKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKENLLSQ 108
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 155 bits (393), Expect = 2e-41
Identities = 47/251 (18%), Positives = 87/251 (34%), Gaps = 48/251 (19%)
Query: 51 IHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 110
+ L + F AI Q+P AEA+ LG E Q A+ + + L+P+ +
Sbjct: 74 KRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL 133
Query: 111 DGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR 170
+ LA + + A +A ++ NP + + R+ ++
Sbjct: 134 KALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS------- 186
Query: 171 SDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQN 230
L+ K L+ E A QN
Sbjct: 187 ------PVDSSVLEGVKELYLE---------------------------------AAHQN 207
Query: 231 P--LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 288
+ + + LG ++ G+ A++ + A+ ++P+ + L A L E+AV
Sbjct: 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV 267
Query: 289 QAYVTALQYNP 299
+AY AL+ P
Sbjct: 268 EAYTRALEIQP 278
Score = 121 bits (306), Expect = 6e-30
Identities = 15/142 (10%), Positives = 35/142 (24%), Gaps = 11/142 (7%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
+ G + G L + A+ P + + L +
Sbjct: 56 FHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENE 115
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP 695
+ A+ + +E +P+ A L + A + + +P
Sbjct: 116 QAAIV-----------ALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164
Query: 696 NFLDAYINLGNVLKEARIFDRA 717
+ N R ++
Sbjct: 165 KYKYLVKNKKGSPGLTRRMSKS 186
Score = 119 bits (301), Expect = 2e-29
Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 23/164 (14%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625
L + F AI Q+P AEA+ LG E Q A+ + + L+P+ + + L
Sbjct: 80 DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMAL 139
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
A + + A + I+ P + N + +
Sbjct: 140 AVSYTNTSHQQDACE-----------ALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV 188
Query: 686 H----------FEKAVSLDPNFLDA--YINLGNVLKEARIFDRA 717
+ +A + + +D LG + + F+RA
Sbjct: 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRA 232
Score = 116 bits (293), Expect = 3e-28
Identities = 29/153 (18%), Positives = 49/153 (32%), Gaps = 23/153 (15%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEAL----------ENYRHAVRLKPDFID--GYIN 624
IKQNP N ++ ++ E Y A D ID
Sbjct: 159 WIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218
Query: 625 LAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAI 684
L +G+ +A+ + A+ RP+ W+ LG A+
Sbjct: 219 LGVLFHLSGEFNRAID-----------AFNAALTVRPEDYSLWNRLGATLANGDRSEEAV 267
Query: 685 HHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+ +A+ + P F+ + NLG + A
Sbjct: 268 EAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300
Score = 115 bits (290), Expect = 6e-28
Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 11/135 (8%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
+ + + + LG ++ G+ A++ + A+ ++P+ + L A L
Sbjct: 204 AHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS 263
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP 695
E+AV+ Y +A+E +P F + NLG G A+ +F A+SL
Sbjct: 264 EEAVE-----------AYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312
Query: 696 NFLDAYINLGNVLKE 710
+ +
Sbjct: 313 KSRNQQQVPHPAISG 327
Score = 106 bits (267), Expect = 5e-25
Identities = 26/259 (10%), Positives = 54/259 (20%), Gaps = 74/259 (28%)
Query: 68 AIKQNPLLAEAYSNLGN--------VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 119
+ + + + + + + + + Y G
Sbjct: 15 DTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLK 74
Query: 120 LVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKA 179
+ GD+ + A+ +P LG A +
Sbjct: 75 RLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVAL---------QRC 125
Query: 180 LGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSN 239
L ++P N +A
Sbjct: 126 L------------ELQP-----------NN------------------------LKALMA 138
Query: 240 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM----------EQAVQ 289
L Y Q+A E ++ ++ P + N + M E +
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198
Query: 290 AYVTALQYNPLLKKEDGWN 308
Y+ A N + D
Sbjct: 199 LYLEAAHQNGDMIDPDLQT 217
Score = 98.6 bits (246), Expect = 3e-22
Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 10/140 (7%)
Query: 565 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 624
+ +++ A+ P ++ LG + +EA+E Y A+ ++P FI N
Sbjct: 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN 286
Query: 625 LAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFA--VAWSNLGCVFNAQGEIWL 682
L + + G +AV ++TAL + W+ L + + L
Sbjct: 287 LGISCINLGAYREAVSNFLTALSLQRK-SRNQQQVPHPAISGNIWAALRIALSLMDQPEL 345
Query: 683 A-------IHHFEKAVSLDP 695
+ +A +LDP
Sbjct: 346 FQAANLGDLDVLLRAFNLDP 365
Score = 95.9 bits (239), Expect = 3e-21
Identities = 20/142 (14%), Positives = 36/142 (25%), Gaps = 19/142 (13%)
Query: 577 AIKQNPLLAEAYSNLGN--------VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 628
+ + + + + + + + + Y G
Sbjct: 15 DTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLK 74
Query: 629 LVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFE 688
+ GD+ + AI P A AW LG AI +
Sbjct: 75 RLKEGDLPVTIL-----------FMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQ 123
Query: 689 KAVSLDPNFLDAYINLGNVLKE 710
+ + L PN L A + L
Sbjct: 124 RCLELQPNNLKALMALAVSYTN 145
Score = 85.5 bits (212), Expect = 7e-18
Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 5/120 (4%)
Query: 599 GQLQEALENYRHAVRLKPDFIDGYINLAA-ALVAAGDMEQAVQAYVTALQYNPSCYLKAI 657
+ + A + +A ++ Q + + Y
Sbjct: 3 MEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEK----GYYFHT 58
Query: 658 ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
E G +G++ + I E A+ DP +A+ LG E A
Sbjct: 59 ENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAA 118
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 154 bits (390), Expect = 5e-40
Identities = 30/243 (12%), Positives = 61/243 (25%), Gaps = 44/243 (18%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A P A ++ + +Q L A L P+ + + A ++
Sbjct: 98 AHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQ 157
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNL 176
+ A P+ + G +AL + + C + G
Sbjct: 158 ALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 217
Query: 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEA 236
+AL + + + A P A
Sbjct: 218 KQALETVQRLLPVLCQ---------------------------------AHGLTPQQVVA 244
Query: 237 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
++ G + +Q L A L P + + + A +++ + A
Sbjct: 245 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHG 304
Query: 297 YNP 299
P
Sbjct: 305 LTP 307
Score = 147 bits (374), Expect = 7e-38
Identities = 28/243 (11%), Positives = 59/243 (24%), Gaps = 44/243 (18%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
+ P A ++ + +Q L A L P + + A ++
Sbjct: 64 PLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQ 123
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNL 176
+ + A P+ + +AL + + C + G
Sbjct: 124 RLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGG 183
Query: 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEA 236
+AL + + + A P A
Sbjct: 184 KQALETVQRLLPVLCQ---------------------------------AHGLTPQQVVA 210
Query: 237 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
++ G + +Q L A L P + + A +++ + A
Sbjct: 211 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 270
Query: 297 YNP 299
P
Sbjct: 271 LTP 273
Score = 147 bits (373), Expect = 9e-38
Identities = 31/292 (10%), Positives = 66/292 (22%), Gaps = 44/292 (15%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78
+ Q + + + A P A
Sbjct: 185 QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 244
Query: 79 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 138
++ G + +Q L A L P + + + A +++ + A
Sbjct: 245 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHG 304
Query: 139 YNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNLLKALGRLDEAK 187
P + G +AL + + C + +AL +
Sbjct: 305 LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLL 364
Query: 188 NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKER 247
+ + A P A ++ G +
Sbjct: 365 PVLCQ---------------------------------AHGLTPEQVVAIASNGGGKQAL 391
Query: 248 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+Q L A L P+ + + A +++ + A P
Sbjct: 392 ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 443
Score = 146 bits (371), Expect = 1e-37
Identities = 30/292 (10%), Positives = 63/292 (21%), Gaps = 44/292 (15%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78
++ Q + + + A P A
Sbjct: 151 QALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 210
Query: 79 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 138
++ G + +Q L A L P + + A +++ + A
Sbjct: 211 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 270
Query: 139 YNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNLLKALGRLDEAK 187
P + +AL + + C + G +AL +
Sbjct: 271 LTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL- 329
Query: 188 NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKER 247
A P A ++ +
Sbjct: 330 -------------------------------LPVLCQ-AHGLTPQQVVAIASHDGGKQAL 357
Query: 248 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+Q L A L P+ + + A +++ + A P
Sbjct: 358 ETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 409
Score = 146 bits (370), Expect = 3e-37
Identities = 28/243 (11%), Positives = 55/243 (22%), Gaps = 44/243 (18%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A P A ++ + +Q L A L P + + A ++
Sbjct: 268 AHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 327
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNL 176
+ + A P + +AL + + C + G
Sbjct: 328 RLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGG 387
Query: 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEA 236
+AL + + + A P A
Sbjct: 388 KQALETVQRLLPVLCQ---------------------------------AHGLTPEQVVA 414
Query: 237 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
++ + +Q L A L P + + A + + AL
Sbjct: 415 IASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALA 474
Query: 297 YNP 299
Sbjct: 475 ALT 477
Score = 131 bits (332), Expect = 1e-32
Identities = 23/164 (14%), Positives = 42/164 (25%), Gaps = 23/164 (14%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ + +Q L A L P+ + + A ++
Sbjct: 98 AHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQ 157
Query: 637 QAVQAYVTALQYNP-----------------------SCYLKAIETRPDFAVAWSNLGCV 673
+ A P +A P VA ++ G
Sbjct: 158 ALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 217
Query: 674 FNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A + + +A L P + A + G + R
Sbjct: 218 KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL 261
Score = 123 bits (310), Expect = 1e-29
Identities = 30/235 (12%), Positives = 55/235 (23%), Gaps = 51/235 (21%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A P A ++ G + +Q L A L P + + A ++
Sbjct: 302 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQ 361
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNL 176
+ + A P+ + G +AL + + C +
Sbjct: 362 RLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 421
Query: 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEA 236
+AL + L A P A
Sbjct: 422 KQALETVQRL------------------------------LPV---LCQAHGLTPQQVVA 448
Query: 237 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291
++ G + L A+ + + AL G A+ A
Sbjct: 449 IASNGGGRPALESIVAQLSRPDPALAALTN------DHLVALACLGG-RPALDAV 496
Score = 123 bits (310), Expect = 1e-29
Identities = 27/248 (10%), Positives = 61/248 (24%), Gaps = 54/248 (21%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHA-----VRLKPDFIDGYINLAAALVA 122
++ + + G EA+ +R+A + L P+ + + A
Sbjct: 30 PLQLDTGQLLKIAKRGG-----VTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQA 84
Query: 123 AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRS 171
+++ + A P + +AL + + C +
Sbjct: 85 LETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIA 144
Query: 172 DLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNP 231
+AL + + + A P
Sbjct: 145 SHDGGKQALETVQALLPVLCQ---------------------------------AHGLTP 171
Query: 232 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291
A ++ G + +Q L A L P + + A +++ +
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 231
Query: 292 VTALQYNP 299
A P
Sbjct: 232 CQAHGLTP 239
Score = 118 bits (297), Expect = 5e-28
Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ G + +Q L A L P + + A ++
Sbjct: 302 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQ 361
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A P+ VA ++ G A + + +A L P
Sbjct: 362 RLLP-----------VLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPE 410
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ A + + R
Sbjct: 411 QVVAIASHDGGKQALETVQRL 431
Score = 117 bits (295), Expect = 8e-28
Identities = 21/141 (14%), Positives = 40/141 (28%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ G + +Q L A L P + + A ++
Sbjct: 200 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 259
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A P VA ++ A + + +A L P
Sbjct: 260 RLLP-----------VLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQ 308
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ A + G + R
Sbjct: 309 QVVAIASNGGGKQALETVQRL 329
Score = 116 bits (292), Expect = 2e-27
Identities = 19/141 (13%), Positives = 39/141 (27%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ + +Q L A L P+ + + A ++
Sbjct: 336 AHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQ 395
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A P+ VA ++ A + + +A L P
Sbjct: 396 RLLP-----------VLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 444
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ A + G
Sbjct: 445 QVVAIASNGGGRPALESIVAQ 465
Score = 115 bits (289), Expect = 5e-27
Identities = 20/141 (14%), Positives = 39/141 (27%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ + +Q L A L P + + A ++
Sbjct: 268 AHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 327
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A P VA ++ A + + +A L P
Sbjct: 328 RLLP-----------VLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE 376
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ A + G + R
Sbjct: 377 QVVAIASNGGGKQALETVQRL 397
Score = 110 bits (277), Expect = 2e-25
Identities = 19/141 (13%), Positives = 40/141 (28%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
+ P A ++ + +Q L A L P + + A ++
Sbjct: 64 PLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQ 123
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A P+ VA ++ A + + +A L P
Sbjct: 124 RLLP-----------VLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPE 172
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ A + G + R
Sbjct: 173 QVVAIASNGGGKQALETVQRL 193
Score = 106 bits (266), Expect = 3e-24
Identities = 23/131 (17%), Positives = 41/131 (31%), Gaps = 12/131 (9%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ G + +Q L A L P+ + + A ++
Sbjct: 370 AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQ 429
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A P VA ++ G A I + + A++ N
Sbjct: 430 RLLP-----------VLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTN 478
Query: 697 -FLDAYINLGN 706
L A LG
Sbjct: 479 DHLVALACLGG 489
Score = 98.3 bits (245), Expect = 2e-21
Identities = 22/235 (9%), Positives = 47/235 (20%), Gaps = 44/235 (18%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
+ L A E ++L +
Sbjct: 4 HHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGA 63
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNLLKALGRLD 184
L P+ + +AL + + C + +AL +
Sbjct: 64 PLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQ 123
Query: 185 EAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVY 244
+ + A P A ++
Sbjct: 124 RLLPVLCQ---------------------------------AHGLTPEQVVAIASHDGGK 150
Query: 245 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+ +Q L A L P+ + + A +++ + A P
Sbjct: 151 QALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 205
Score = 91.0 bits (226), Expect = 4e-19
Identities = 26/188 (13%), Positives = 46/188 (24%), Gaps = 9/188 (4%)
Query: 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAH 63
IA G G L + Q + + +
Sbjct: 313 IASNGGGKQAL-------ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLP 365
Query: 64 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 123
A P A ++ G + +Q L A L P+ + + A
Sbjct: 366 VLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQAL 425
Query: 124 GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC--VRSDLGNLLKALG 181
+++ + A P + G AL + + + + L AL
Sbjct: 426 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALA 485
Query: 182 RLDEAKNL 189
L L
Sbjct: 486 CLGGRPAL 493
Score = 90.2 bits (224), Expect = 5e-19
Identities = 17/150 (11%), Positives = 42/150 (28%), Gaps = 21/150 (14%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHA-----VRLKPDFIDGYINLAAALVA 631
++ + + G EA+ +R+A + L P+ + + A
Sbjct: 30 PLQLDTGQLLKIAKRGG-----VTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQA 84
Query: 632 AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691
+++ + +A P VA ++ A + + +A
Sbjct: 85 LETVQRLLP-----------VLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH 133
Query: 692 SLDPNFLDAYINLGNVLKEARIFDRANTLF 721
L P + A + + +
Sbjct: 134 GLTPEQVVAIASHDGGKQALETVQALLPVL 163
Score = 77.1 bits (190), Expect = 7e-15
Identities = 18/137 (13%), Positives = 35/137 (25%), Gaps = 11/137 (8%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
+ L A E ++L + +AV A+
Sbjct: 4 HHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVT-----AVEAVHAWRN 58
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
AL + P+ VA ++ A + + +A L P + A +
Sbjct: 59 AL------TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH 112
Query: 705 GNVLKEARIFDRANTLF 721
+ R +
Sbjct: 113 DGGKQALETVQRLLPVL 129
Score = 32.0 bits (73), Expect = 0.86
Identities = 11/67 (16%), Positives = 17/67 (25%), Gaps = 5/67 (7%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
+ L A E ++L + +AV A+
Sbjct: 4 HHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVT-----AVEAVHAWRN 58
Query: 294 ALQYNPL 300
AL PL
Sbjct: 59 ALTGAPL 65
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 147 bits (373), Expect = 6e-40
Identities = 41/237 (17%), Positives = 70/237 (29%), Gaps = 44/237 (18%)
Query: 73 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA 132
+A+ GN + + Q EA+E+Y A L D N AAA G+ E A+
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAIST 60
Query: 133 YVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY----------CVRSDLGNLLKALGR 182
A++ ++ + +G ++L L
Sbjct: 61 LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRN 120
Query: 183 LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242
++ NP AE G
Sbjct: 121 AEKELKKAEA---------------------------------EAYVNPEKAEEARLEGK 147
Query: 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
Y + A++ Y ++ P+ GY N AAAL +A+ A++ +P
Sbjct: 148 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204
Score = 129 bits (327), Expect = 9e-34
Identities = 35/278 (12%), Positives = 74/278 (26%), Gaps = 46/278 (16%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78
Y+A ++ A H + W + T L ++ ++ + + + A++Q +
Sbjct: 16 YKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAISTLNDAVEQGREMRAD 74
Query: 79 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 138
Y + + G L + + + + + A L + E+ ++
Sbjct: 75 YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAY 133
Query: 139 YNPDLYCVRSDLGNLLKALGRLDEAKDLY--CVR---------SDLGNLLKALGRLDEAK 187
NP+ G A Y ++ S+ L L EA
Sbjct: 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEA- 192
Query: 188 NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKER 247
+ AI+++P AY
Sbjct: 193 -----------------------------IADC---NKAIEKDPNFVRAYIRKATAQIAV 220
Query: 248 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
+ ALE A + +G + +
Sbjct: 221 KEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258
Score = 120 bits (303), Expect = 2e-30
Identities = 31/143 (21%), Positives = 48/143 (33%), Gaps = 11/143 (7%)
Query: 563 ECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 622
+ R +K + NP AE G Y + A++ Y ++ P+ GY
Sbjct: 117 KLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGY 176
Query: 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL 682
N AAAL +A+ KAIE P+F A+ A E
Sbjct: 177 SNRAAALAKLMSFPEAIA-----------DCNKAIEKDPNFVRAYIRKATAQIAVKEYAS 225
Query: 683 AIHHFEKAVSLDPNFLDAYINLG 705
A+ + A + D +
Sbjct: 226 ALETLDAARTKDAEVNNGSSARE 248
Score = 116 bits (293), Expect = 3e-29
Identities = 23/179 (12%), Positives = 53/179 (29%), Gaps = 25/179 (13%)
Query: 562 FECRKLDKS-AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 620
++ R+ D++ H+ A + + +N E+G+ + A+ AV +
Sbjct: 16 YKARQFDEAIEHY-NKAWELHKD-ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA 73
Query: 621 GYINLAAALVAAGDMEQAVQAYVTALQYNP----------------------SCYLKAIE 658
Y ++ + G+ + ++Y
Sbjct: 74 DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAY 133
Query: 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
P+ A G + + + A+ + + + P Y N L + F A
Sbjct: 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEA 192
Score = 114 bits (287), Expect = 2e-28
Identities = 24/141 (17%), Positives = 44/141 (31%), Gaps = 12/141 (8%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
I+ + ++ + ++ L+ + P+ + D
Sbjct: 98 TIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
AV+ Y + I+ P+ A +SN AI KA+ DPN
Sbjct: 157 NAVK-----------AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205
Query: 697 FLDAYINLGNVLKEARIFDRA 717
F+ AYI + + A
Sbjct: 206 FVRAYIRKATAQIAVKEYASA 226
Score = 106 bits (267), Expect = 8e-26
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 13/136 (9%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA 641
+A+ GN + + Q EA+E+Y A L D N AAA G+ E A+
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAIS- 59
Query: 642 YVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAY 701
A+E + + + F G + + +K + L +
Sbjct: 60 ----------TLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH 109
Query: 702 INLGNVLKEARIFDRA 717
++L + R ++
Sbjct: 110 -RTADILTKLRNAEKE 124
Score = 59.1 bits (144), Expect = 1e-09
Identities = 10/60 (16%), Positives = 18/60 (30%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
AI+++P AY + ALE A + +G + +
Sbjct: 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 143 bits (364), Expect = 5e-39
Identities = 36/239 (15%), Positives = 70/239 (29%), Gaps = 55/239 (23%)
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
+ ++ + L Y ++A + A++ P ++ A ++A
Sbjct: 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQ 62
Query: 131 QAYVTALQYNPDLYCVRSDLGNLLKA-LGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNL 189
+++ AL PD + ++ G L L R E+ + KAL
Sbjct: 63 ESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYF---------DKAL--------- 104
Query: 190 HTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 249
A P A N G ++GQ
Sbjct: 105 ------------------------------------ADPTYPTPYIANLNKGICSAKQGQ 128
Query: 250 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWN 308
A + ++ +P F + LA + AG + A + +L+ +D
Sbjct: 129 FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLL 187
Score = 126 bits (319), Expect = 5e-33
Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 10/142 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA-AGDM 635
A+K +P A+ +Y+ +A E++R A+ +KPD + N L
Sbjct: 34 ALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRP 93
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP 695
+++ + AL A T P +A N G QG+ LA + +++++ P
Sbjct: 94 AESMAYFDKAL---------ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP 144
Query: 696 NFLDAYINLGNVLKEARIFDRA 717
F A+ L A A
Sbjct: 145 QFPPAFKELARTKMLAGQLGDA 166
Score = 118 bits (299), Expect = 2e-30
Identities = 35/236 (14%), Positives = 64/236 (27%), Gaps = 61/236 (25%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA-AGDM 126
A+K +P A+ +Y+ +A E++R A+ +KPD + N L
Sbjct: 34 ALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRP 93
Query: 127 EQAVQAYVTALQ--YNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLD 184
+++ + AL P Y + G G+ A+ ++L
Sbjct: 94 AESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYL---------KRSL---- 140
Query: 185 EAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVY 244
+P + A+ L
Sbjct: 141 --------AAQP-----------QF------------------------PPAFKELARTK 157
Query: 245 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPL 300
GQL +A ++ + L + A + A AY Q
Sbjct: 158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKI--AKALGNAQAAYEYEAQLQAN 211
Score = 111 bits (280), Expect = 8e-28
Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 14/141 (9%)
Query: 580 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 639
+ ++ + L Y ++A + A++ P ++ A ++A
Sbjct: 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQ 62
Query: 640 QAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQ-GEIWLAIHHFEKAVS--LDPN 696
+ + +A+ +PD A +N G + ++ +F+KA++ P
Sbjct: 63 E-----------SFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPT 111
Query: 697 FLDAYINLGNVLKEARIFDRA 717
A +N G + F A
Sbjct: 112 PYIANLNKGICSAKQGQFGLA 132
Score = 101 bits (255), Expect = 1e-24
Identities = 27/145 (18%), Positives = 47/145 (32%), Gaps = 16/145 (11%)
Query: 577 AIKQNPLLAEAYSNLGNVYKER-GQLQEALENYRHAVR--LKPDFIDGYINLAAALVAAG 633
A+ P AE +N G R + E++ + A+ P +N G
Sbjct: 68 ALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQG 127
Query: 634 DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693
A +++ +P F A+ L G++ A ++F+K S
Sbjct: 128 QFGLAEAYL-----------KRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176
Query: 694 DPNFLDAYINLGNVLKEARIFDRAN 718
+ LG K A+ A
Sbjct: 177 VEVLQADDLLLG--WKIAKALGNAQ 199
Score = 86.5 bits (215), Expect = 3e-19
Identities = 30/130 (23%), Positives = 45/130 (34%), Gaps = 9/130 (6%)
Query: 40 NNTGVLLLLSSIHFQCRKLDKS-AHFS-TLAIKQNPLLAEAYSNLGNVYKERGQLQEALE 97
NN G L + + +S A+F LA P A N G ++GQ A
Sbjct: 80 NNYGWFL-----CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134
Query: 98 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL 157
+ ++ +P F + LA + AG + A + L DL K
Sbjct: 135 YLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ--ADDLLLGWKIA 192
Query: 158 GRLDEAKDLY 167
L A+ Y
Sbjct: 193 KALGNAQAAY 202
Score = 85.0 bits (211), Expect = 1e-18
Identities = 24/126 (19%), Positives = 38/126 (30%), Gaps = 13/126 (10%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
LA P A N G ++GQ A + ++ +P F + LA + AG +
Sbjct: 104 LADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP 695
A + K LG + + A +E L
Sbjct: 164 GDADY-----------YFKKYQSRVEVLQADDLLLG--WKIAKALGNAQAAYEYEAQLQA 210
Query: 696 NFLDAY 701
NF +
Sbjct: 211 NFPYSE 216
Score = 58.8 bits (143), Expect = 8e-10
Identities = 10/60 (16%), Positives = 22/60 (36%)
Query: 658 ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
E + + L + + A E A+ DP A++ + + ++ D+A
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 148 bits (376), Expect = 6e-38
Identities = 41/289 (14%), Positives = 79/289 (27%), Gaps = 41/289 (14%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
L + + A+ + + L+ + F A+
Sbjct: 246 LCYTGIFHFLKNNLLDAQVLLQESINLH-PTPNSYIFLALTLADKENSQEFFKFFQKAVD 304
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
NP Y + G +Y + A E+++ A L P+ + YI LA L G ++
Sbjct: 305 LNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESE 364
Query: 131 QAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLH 190
+ P L V + +L G D A Y A
Sbjct: 365 AFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY---------DIAK---------- 405
Query: 191 TENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 250
++ E H + + S+ + +
Sbjct: 406 --RLEE-------------------VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444
Query: 251 QEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
A++ A L P I LA + +++A++ + +
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493
Score = 145 bits (367), Expect = 9e-37
Identities = 46/275 (16%), Positives = 94/275 (34%), Gaps = 27/275 (9%)
Query: 51 IHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 110
F + +++ + AI+ +P YSN+ Y G L++ +E A+ +KPD
Sbjct: 34 HFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHS 93
Query: 111 DGYINLAAALVAAGDMEQAVQAY-VTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCV 169
+ A+A + G+ A+ V +L + D + L L ++L
Sbjct: 94 KALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD 153
Query: 170 RSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQ-----------NAIVCNYGGRKPTTLE 218
+L + L + +++ ++ +A+ Y L
Sbjct: 154 EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLV 213
Query: 219 SAHFS--------------TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 264
+ T+ A A G + + L +A + ++ L
Sbjct: 214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273
Query: 265 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
P + YI LA L + ++ + + A+ NP
Sbjct: 274 PT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNP 307
Score = 130 bits (329), Expect = 6e-32
Identities = 38/259 (14%), Positives = 82/259 (31%), Gaps = 26/259 (10%)
Query: 67 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 126
L+ Q A N GN + EA++ Y++A+ L P+ Y N++A ++ GD+
Sbjct: 16 LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDL 75
Query: 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEA 186
E+ ++ AL+ PD + ++LG +A V S G+ A
Sbjct: 76 EKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLE 135
Query: 187 KNLHTENIK-----------------PVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ 229
+NL+ + +K P + + + +++ ++ A
Sbjct: 136 RNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYAL 195
Query: 230 NPLLAEAYSNLGNVYKERG---------QLQEALENYRHAVRLKPDFIDGYINLAAALVA 280
+ + + L L+ +
Sbjct: 196 LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255
Query: 281 AGDMEQAVQAYVTALQYNP 299
++ A ++ +P
Sbjct: 256 KNNLLDAQVLLQESINLHP 274
Score = 126 bits (318), Expect = 2e-30
Identities = 30/256 (11%), Positives = 58/256 (22%), Gaps = 47/256 (18%)
Query: 57 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVY--KERGQLQEALENYRHAVRLKPDFIDGYI 114
D + + A+++ + + N K L L+ +
Sbjct: 188 NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALC 247
Query: 115 NLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY------- 167
++ A ++ +P L L E +
Sbjct: 248 YTGIFHFLKNNLLDAQVLLQESINLHPTPN-SYIFLALTLADKENSQEFFKFFQKAVDLN 306
Query: 168 ----CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFS 223
G + L AK +
Sbjct: 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQK------------------------------- 335
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
A NP Y L + ++G+ E+ + P + A L GD
Sbjct: 336 --AQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD 393
Query: 284 MEQAVQAYVTALQYNP 299
+ A++ Y A +
Sbjct: 394 FDTAIKQYDIAKRLEE 409
Score = 124 bits (314), Expect = 5e-30
Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 11/155 (7%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625
+ F A+ NP Y + G +Y + A E+++ A L P+ + YI L
Sbjct: 291 NSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL 350
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
A L G ++ + + P + + +G+ AI
Sbjct: 351 ACLLYKQGKFTESEA-----------FFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIK 399
Query: 686 HFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTL 720
++ A L+ ++ +G ++ +A I R ++
Sbjct: 400 QYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434
Score = 121 bits (306), Expect = 4e-29
Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 12/141 (8%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
+I +P +Y L ++ QE + ++ AV L P++ Y + D +
Sbjct: 269 SINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYK 327
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
A + + KA P+ + L C+ QG+ + F + P
Sbjct: 328 NAKE-----------DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ +L + FD A
Sbjct: 377 LPEVPTFFAEILTDRGDFDTA 397
Score = 120 bits (302), Expect = 2e-28
Identities = 40/244 (16%), Positives = 80/244 (32%), Gaps = 15/244 (6%)
Query: 481 RIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNP--EHPNYVAAARA 538
R + Q + + + + + S ++ + NY A
Sbjct: 136 RNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYAL 195
Query: 539 TKYVYNVEPDLTREGGSIPITLTFE-CRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE 597
T EG + L + +T+ A A G +
Sbjct: 196 LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255
Query: 598 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAI 657
+ L +A + ++ L P + YI LA L + ++ + + KA+
Sbjct: 256 KNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFK-----------FFQKAV 303
Query: 658 ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+ P++ + + G ++ + A F+KA SL+P + YI L +L + F +
Sbjct: 304 DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTES 363
Query: 718 NTLF 721
F
Sbjct: 364 EAFF 367
Score = 117 bits (294), Expect = 2e-27
Identities = 36/195 (18%), Positives = 59/195 (30%), Gaps = 15/195 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A NP Y L + ++G+ E+ + P + A L GD +
Sbjct: 336 AQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFD 395
Query: 637 QAVQAYVTALQYNPSCY-----LKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691
A++ Y A + + + + S+ + + AI KA
Sbjct: 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455
Query: 692 SLDPNFLDAYINLGNVLKEARIFDRANTLF---------YVSSYFMITDEDIDVILERCE 742
LDP A I L + + D A LF T + I +R
Sbjct: 456 ELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKRLR 515
Query: 743 AKTEELNKKFEQLGE 757
A ++ K E
Sbjct: 516 AD-PIISAKMELTLA 529
Score = 107 bits (269), Expect = 2e-24
Identities = 31/219 (14%), Positives = 68/219 (31%), Gaps = 47/219 (21%)
Query: 48 LSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 107
L+ + ++ K +S F + P L E + + +RG A++ Y A RL+
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409
Query: 108 DFIDGYINLAAALVAA----------------GDMEQAVQAYVTALQYNPDLYCVRSDLG 151
++ + + A A++ A + +P + L
Sbjct: 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469
Query: 152 NLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG 211
L + ++DEA +L+ + + + A
Sbjct: 470 QLKLQMEKIDEAIELF---------EDSA------------ILARTMDEKLQAT------ 502
Query: 212 RKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 250
T A ++ +P+++ Y+ +G L
Sbjct: 503 ----TFAEAAKIQKRLRADPIISAKMELTLARYRAKGML 537
Score = 102 bits (255), Expect = 1e-22
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
L+ Q A N GN + EA++ Y++A+ L P+ Y N++A ++ GD+
Sbjct: 16 LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDL 75
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP 695
E+ ++ KA+E +PD + A + G A+ +SL+
Sbjct: 76 EKVIE-----------FTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL-SVLSLNG 123
Query: 696 NFLDAYINLG 705
+F A I
Sbjct: 124 DFDGASIEPM 133
Score = 97.9 bits (244), Expect = 3e-21
Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 20/168 (11%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
F + +++ + AI+ +P YSN+ Y G L++ +E A+ +KPD
Sbjct: 36 FTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKA 95
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPS-------------CYLKAIETRPDFAVAW- 667
+ A+A + G+ A+ + L N +A++ +
Sbjct: 96 LLRRASANESLGNFTDAMFDL-SVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDE 154
Query: 668 SNLGCVFNAQGEIWLAIHHFEKAVSLDP-----NFLDAYINLGNVLKE 710
V + + F+ + + N+ AY L + L+
Sbjct: 155 GRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQR 202
Score = 92.9 bits (231), Expect = 1e-19
Identities = 32/220 (14%), Positives = 64/220 (29%), Gaps = 18/220 (8%)
Query: 599 GQLQEALENYRHAVRLKPD----FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYL 654
G + L P + N A + +A++ Y
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIK-----------YYQ 49
Query: 655 KAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIF 714
AIE P+ V +SN+ + + G++ I KA+ + P+ A + + + F
Sbjct: 50 YAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNF 109
Query: 715 DRANTLFYVSS-YFMITDEDIDVILERCEAKTEELNKKFEQLGESSLRDFTLDAPTQSVY 773
A V S I+ +LER K K + + P+ +
Sbjct: 110 TDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAM--KVLNENLSKDEGRGSQVLPSNTSL 167
Query: 774 KFEGEDYREKQKIVPIGHWIEPPKRERKANYAVDAYFKEA 813
+ ++ + + A+ +
Sbjct: 168 ASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSAT 207
Score = 84.8 bits (210), Expect = 4e-17
Identities = 14/134 (10%), Positives = 38/134 (28%), Gaps = 30/134 (22%)
Query: 577 AIKQNPLLAEAYSNLGNV----------------YKERGQLQEALENYRHAVRLKPDFID 620
A + + + + +G + + + A++ A L P
Sbjct: 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463
Query: 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSC--------------YLKAIETRPDFAVA 666
I LA + +++A++ + + + K + P +
Sbjct: 464 AKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKRLRADPIISAK 523
Query: 667 WSNLGCVFNAQGEI 680
+ A+G +
Sbjct: 524 MELTLARYRAKGML 537
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 144 bits (365), Expect = 8e-38
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 792 WIEPPKRERKANYAVDAYFKEALRTSEPKAPKAPRPPKQPIVQDFQFFPPRLFEILDQEI 851
+ P KRERK NY++D Y+K+ L T P PR PK + Q PP+L + ++E
Sbjct: 2 LLNPTKRERKENYSIDNYYKDVLNTGRSSTPSHPRMPKPHVFHSHQLQPPQLQVLYEKER 61
Query: 852 YYFRKTVGYKVPKNPELGSDA--------TKAQKEEQKKIDESEPLTEEELAEKEELLTQ 903
+ K GY + + + + + ++ S+PLTEEE K + ++
Sbjct: 62 MWTAKKTGYVPTMDDVKAAYGKISDQEEQKEKLELLKLSVNNSQPLTEEEEKMKADWESE 121
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 136 bits (345), Expect = 1e-37
Identities = 49/133 (36%), Positives = 72/133 (54%), Gaps = 11/133 (8%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
AEA+ NLGN Y ++G EA+E Y+ A+ L P + + NL A GD ++A++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE---- 56
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
Y KA+E P A AW NLG + QG+ AI +++KA+ LDP +A+ NL
Sbjct: 57 -------YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 109
Query: 705 GNVLKEARIFDRA 717
GN + +D A
Sbjct: 110 GNAYYKQGDYDEA 122
Score = 127 bits (322), Expect = 2e-34
Identities = 54/191 (28%), Positives = 77/191 (40%), Gaps = 56/191 (29%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
AEA+ NLGN Y ++G EA+E Y+ A+ L P + + NL A GD ++A++ Y
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIK 195
AL+ +P +LGN G DEA + Y KAL +
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ---------KAL------------ELD 99
Query: 196 PVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALE 255
P AEA+ NLGN Y ++G EA+E
Sbjct: 100 P-----------RS------------------------AEAWYNLGNAYYKQGDYDEAIE 124
Query: 256 NYRHAVRLKPD 266
Y+ A+ L P
Sbjct: 125 YYQKALELDPR 135
Score = 122 bits (308), Expect = 1e-32
Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 11/120 (9%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++ +P AEA+ NLGN Y ++G EA+E Y+ A+ L P + + NL A GD +
Sbjct: 27 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 86
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+A++ Y KA+E P A AW NLG + QG+ AI +++KA+ LDP
Sbjct: 87 EAIE-----------YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Score = 107 bits (269), Expect = 2e-27
Identities = 36/100 (36%), Positives = 55/100 (55%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A++ +P AEA+ NLGN Y ++G EA+E Y+ A+ L P + + NL A GD +
Sbjct: 27 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 86
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
+A++ Y AL+ +P +LGN G DEA + Y
Sbjct: 87 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Score = 90.1 bits (225), Expect = 2e-21
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 33/127 (25%)
Query: 173 LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL 232
LGN G DEA I Y +K A++ +P
Sbjct: 7 LGNAYYKQGDYDEA------------------IEY-Y--QK------------ALELDPR 33
Query: 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYV 292
AEA+ NLGN Y ++G EA+E Y+ A+ L P + + NL A GD ++A++ Y
Sbjct: 34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 93
Query: 293 TALQYNP 299
AL+ +P
Sbjct: 94 KALELDP 100
Score = 87.8 bits (219), Expect = 1e-20
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A++ +P AEA+ NLGN Y ++G EA+E Y+ A+ L P + + NL A GD +
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 128 QAVQAYVTALQYNPD 142
+A++ Y AL+ +P
Sbjct: 121 EAIEYYQKALELDPR 135
Score = 80.9 bits (201), Expect = 3e-18
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
AEA+ NLGN Y ++G EA+E Y+ A+ L P + + NL A GD ++A++ Y
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 294 ALQYNP 299
AL+ +P
Sbjct: 61 ALELDP 66
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 135 bits (343), Expect = 2e-37
Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 11/126 (8%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A GD ++A++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE---- 64
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
Y KA+E P+ A AW NLG + QG+ AI +++KA+ LDPN +A NL
Sbjct: 65 -------YYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117
Query: 705 GNVLKE 710
GN ++
Sbjct: 118 GNAKQK 123
Score = 105 bits (265), Expect = 6e-27
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 11/102 (10%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++ +P AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A GD +
Sbjct: 35 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 94
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG 678
+A++ Y KA+E P+ A A NLG QG
Sbjct: 95 EAIE-----------YYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 104 bits (263), Expect = 1e-26
Identities = 50/207 (24%), Positives = 71/207 (34%), Gaps = 90/207 (43%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + A+
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE--------------------AW-- 46
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIK 195
YN LGN G DEA
Sbjct: 47 ---YN--------------------------------LGNAYYKQGDYDEAIE------- 64
Query: 196 PVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALE 255
Y +K A++ +P AEA+ NLGN Y ++G EA+E
Sbjct: 65 ------------YY--QK------------ALELDPNNAEAWYNLGNAYYKQGDYDEAIE 98
Query: 256 NYRHAVRLKPDFIDGYINLAAALVAAG 282
Y+ A+ L P+ + NL A G
Sbjct: 99 YYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 97.5 bits (244), Expect = 4e-24
Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 40 NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENY 99
N G ++ D++ + A++ +P AEA+ NLGN Y ++G EA+E Y
Sbjct: 13 YNLGNAY------YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 100 RHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALG 158
+ A+ L P+ + + NL A GD ++A++ Y AL+ +P+ + +LGN + G
Sbjct: 67 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 90.1 bits (225), Expect = 1e-21
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 33/127 (25%)
Query: 173 LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL 232
LGN G DEA Y +K A++ +P
Sbjct: 15 LGNAYYKQGDYDEAIE-------------------YY--QK------------ALELDPN 41
Query: 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYV 292
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A GD ++A++ Y
Sbjct: 42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
Query: 293 TALQYNP 299
AL+ +P
Sbjct: 102 KALELDP 108
Score = 80.1 bits (199), Expect = 4e-18
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A GD ++A++ Y
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 294 ALQYNP 299
AL+ +P
Sbjct: 69 ALELDP 74
Score = 33.9 bits (79), Expect = 0.062
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 265 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+ + + NL A GD ++A++ Y AL+ +P
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 138 bits (351), Expect = 8e-37
Identities = 38/274 (13%), Positives = 77/274 (28%), Gaps = 36/274 (13%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLD---KSAHFSTLAIKQNPLL 75
++ +Y A +L ++ N+ + + +++ K D K +
Sbjct: 14 FKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAK 73
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
+ + G + ++GQ A++ Y+ AV +D Y + + G+ A+Q
Sbjct: 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEK 133
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNLLKALGRLD 184
++ V +LG +A + A
Sbjct: 134 QIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDT 193
Query: 185 EAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVY 244
K A Y K + + K L EA + Y
Sbjct: 194 ---------------KQGLAKPY-Y--EKLIEVCAPG----GAKYKDELIEANEYIAYYY 231
Query: 245 KERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 278
+A +++ + L P L L
Sbjct: 232 TINRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265
Score = 130 bits (330), Expect = 5e-34
Identities = 33/241 (13%), Positives = 60/241 (24%), Gaps = 50/241 (20%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV---QA 132
+ + + EA+E + K + Y A + A +
Sbjct: 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62
Query: 133 YVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY--CVRSD---------LGNLLKALG 181
Y + + G +L G+ A Y V D +G+ G
Sbjct: 63 YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG 122
Query: 182 RLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLG 241
A + I+ + + LG
Sbjct: 123 NFPLAIQYMEK---------------------------------QIRPTTTDPKVFYELG 149
Query: 242 NVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM---EQAVQAYVTALQYN 298
Y + +A ++ + LKP+ GY+ A A A A Y ++
Sbjct: 150 QAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209
Query: 299 P 299
Sbjct: 210 A 210
Score = 125 bits (316), Expect = 4e-32
Identities = 24/134 (17%), Positives = 42/134 (31%), Gaps = 11/134 (8%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
+ + + G + ++GQ A++ Y+ AV +D Y + + G+
Sbjct: 66 KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFP 125
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
A+Q K I + LG + E A F K + L PN
Sbjct: 126 LAIQ-----------YMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174
Query: 697 FLDAYINLGNVLKE 710
Y+
Sbjct: 175 IYIGYLWRARANAA 188
Score = 120 bits (304), Expect = 1e-30
Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 6/148 (4%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625
+ + I+ + + LG Y + +A ++ + LKP+ GY+
Sbjct: 123 NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWR 182
Query: 626 AAALVAAGDM---EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL 682
A A A A Y ++ + + + A + + +
Sbjct: 183 ARANAAQDPDTKQGLAKPYYEKLIEVCAP---GGAKYKDELIEANEYIAYYYTINRDKVK 239
Query: 683 AIHHFEKAVSLDPNFLDAYINLGNVLKE 710
A ++ ++LDP A L L+
Sbjct: 240 ADAAWKNILALDPTNKKAIDGLKMKLEH 267
Score = 118 bits (298), Expect = 1e-29
Identities = 24/159 (15%), Positives = 46/159 (28%), Gaps = 14/159 (8%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALEN---YRHAVRLKPDF 618
F+ ++ + Y+ Y E + A ++ Y V
Sbjct: 14 FKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAK 73
Query: 619 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG 678
+ L+ G A+Q Y A++ + +G F +G
Sbjct: 74 SADFEYYGKILMKKGQDSLAIQ-----------QYQAAVDRDTTRLDMYGQIGSYFYNKG 122
Query: 679 EIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
LAI + EK + + LG + + +A
Sbjct: 123 NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161
Score = 116 bits (294), Expect = 3e-29
Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 8/133 (6%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
+ + + EA+E + K + Y A + A +
Sbjct: 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI-- 60
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
Y + + + G + +G+ LAI ++ AV D LD Y +
Sbjct: 61 ------ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQI 114
Query: 705 GNVLKEARIFDRA 717
G+ F A
Sbjct: 115 GSYFYNKGNFPLA 127
Score = 113 bits (284), Expect = 7e-28
Identities = 22/152 (14%), Positives = 52/152 (34%), Gaps = 22/152 (14%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A+ ++ + Y +G+ + +G A++ +R + L A +
Sbjct: 100 AVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYV 159
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG---EIWLAIHHFEKAVSL 693
+A S ++K +E +P+ + + AQ + LA ++EK + +
Sbjct: 160 KAD-----------SSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208
Query: 694 DP--------NFLDAYINLGNVLKEARIFDRA 717
++A + R +A
Sbjct: 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240
Score = 85.4 bits (212), Expect = 2e-18
Identities = 21/207 (10%), Positives = 44/207 (21%), Gaps = 51/207 (24%)
Query: 48 LSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 107
+ S + + + I+ + + LG Y + +A ++ + LKP
Sbjct: 114 IGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP 173
Query: 108 DFIDGYINLAAALVAAGDM---EQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK 164
+ GY+ A A A A Y ++
Sbjct: 174 NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG---------------GAKYKD 218
Query: 165 DLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFST 224
+L + +A
Sbjct: 219 ELIEANEYIAYYYTINRDKVKADAAWKN-------------------------------- 246
Query: 225 LAIKQNPLLAEAYSNLGNVYKERGQLQ 251
+ +P +A L +
Sbjct: 247 -ILALDPTNKKAIDGLKMKLEHHHHHH 272
Score = 70.0 bits (172), Expect = 3e-13
Identities = 12/114 (10%), Positives = 24/114 (21%), Gaps = 22/114 (19%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQL---QEALENYRHAVRL--------KPDFIDGYINL 625
++ P + Y + A Y + + K + I+ +
Sbjct: 168 VLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI 227
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE 679
A D +A + + P A L
Sbjct: 228 AYYYTINRDKVKADA-----------AWKNILALDPTNKKAIDGLKMKLEHHHH 270
Score = 68.1 bits (167), Expect = 1e-12
Identities = 22/152 (14%), Positives = 46/152 (30%), Gaps = 11/152 (7%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78
Y G++ A ++ + R T + V L ++ ++ K+ ++ P +
Sbjct: 119 YNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIG 178
Query: 79 YSNLGNVYKERGQL---QEALENYRHAVRL--------KPDFIDGYINLAAALVAAGDME 127
Y + A Y + + K + I+ +A D
Sbjct: 179 YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGR 159
+A A+ L +P L L+
Sbjct: 239 KADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270
Score = 31.9 bits (73), Expect = 0.77
Identities = 4/37 (10%), Positives = 9/37 (24%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 602
K+ + +P +A L +
Sbjct: 236 DKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHHH 272
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 136 bits (344), Expect = 3e-34
Identities = 35/303 (11%), Positives = 91/303 (30%), Gaps = 28/303 (9%)
Query: 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTL- 67
+ + + + E + ++ L +F+ ++ +
Sbjct: 21 MASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDV 80
Query: 68 -------------AIKQNPLLAEAYSNLGNVYKERGQ-LQEALENYRHAVRLKPDFIDGY 113
+ + A+A G EA AV+L+P+ ++ +
Sbjct: 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAW 140
Query: 114 INLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDL 173
L GD+ A + AL + + +L +L+ L +
Sbjct: 141 NQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHS------- 192
Query: 174 GNLLKALGRLDEAKNLHTENIKP-VTMKVQNAIVCNYGGRKPTTLESAHFS----TLAIK 228
+++ ++ + A + + + + + G+ P + A + +
Sbjct: 193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252
Query: 229 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 288
+ + + N ++K EALE + A L P + + L + +
Sbjct: 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL 312
Query: 289 QAY 291
++
Sbjct: 313 ESK 315
Score = 107 bits (267), Expect = 2e-24
Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 22/145 (15%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQ-LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
+ + A+A G EA AV+L+P+ ++ + L GD+
Sbjct: 94 VLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDV 153
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL---------AIHH 686
A + AL + + V+ NL V ++
Sbjct: 154 TSAHTCFSGALTHCKN------------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201
Query: 687 FEKAVSLDPNFLDAYINLGNVLKEA 711
+ AV +D ++ LGN
Sbjct: 202 AKLAVQMDVLDGRSWYILGNAYLSL 226
Score = 106 bits (266), Expect = 3e-24
Identities = 21/158 (13%), Positives = 47/158 (29%), Gaps = 26/158 (16%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERG---------QLQEALENYRHAVRLKPDFIDGYINLAA 627
A+ + NL V ++ + +++ + AV++ + L
Sbjct: 163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGN 221
Query: 628 ALVAA--------GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE 679
A ++ +QA+ AY + K N + +
Sbjct: 222 AYLSLYFNTGQNPKISQQALSAY--------AQAEKVDRKASSNPDLHLNRATLHKYEES 273
Query: 680 IWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A+ F +A +LDP + + +L+
Sbjct: 274 YGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL 311
Score = 101 bits (253), Expect = 1e-22
Identities = 27/154 (17%), Positives = 58/154 (37%), Gaps = 18/154 (11%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL--VAAGD 634
A+K P L EA++ LG VY ++G + A + A+ + NL+ L +
Sbjct: 129 AVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDS 187
Query: 635 MEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVF--------NAQGEIWLAIHH 686
++ + + +++ A++ +W LG + A+
Sbjct: 188 GDEHSRHVMDSVR----QAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243
Query: 687 FEKAVSLD---PNFLDAYINLGNVLKEARIFDRA 717
+ +A +D + D ++N + K + A
Sbjct: 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEA 277
Score = 87.4 bits (216), Expect = 4e-18
Identities = 44/314 (14%), Positives = 84/314 (26%), Gaps = 72/314 (22%)
Query: 19 YQAGDY-ESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAE 77
DY AE + + E L ++++ + + + A+
Sbjct: 113 NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KV 171
Query: 78 AYSNLGNVYKERG---------QLQEALENYRHAVRLKPDFIDGYINLAAALVAA----- 123
+ NL V ++ + +++ + AV++ + L A ++
Sbjct: 172 SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTG 231
Query: 124 ---GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKAL 180
+QA+ AY A + + DL+ + L K
Sbjct: 232 QNPKISQQALSAYAQAEKVDRKAS-----------------SNPDLHL---NRATLHKYE 271
Query: 181 GRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNL 240
EA FS A +P E
Sbjct: 272 ESYGEAL--------------------------------EGFSQ-AAALDPAWPEPQQRE 298
Query: 241 GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPL 300
+ + +L LE+ K + G + A Q+ L+ PL
Sbjct: 299 QQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPL 358
Query: 301 LKKEDGWNTEPFVL 314
+ G N+ VL
Sbjct: 359 STLQPGVNSGTVVL 372
Score = 81.6 bits (201), Expect = 3e-16
Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 25/150 (16%)
Query: 565 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY--------KERGQLQEALENYRHAVRLK- 615
R + S + LA++ + L ++ LGN Y + Q+AL Y A ++
Sbjct: 193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252
Query: 616 --PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCV 673
D ++N A +A++ + +A P + +
Sbjct: 253 KASSNPDLHLNRATLHKYEESYGEALE-----------GFSQAAALDPAWPEPQQREQQL 301
Query: 674 FNAQGEIWLAIHHFEKAVSLDPNFLDAYIN 703
+ + K P L + +
Sbjct: 302 LEFLSRLTSLLESKGK---TKPKKLQSMLG 328
Score = 75.4 bits (185), Expect = 3e-14
Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 5/128 (3%)
Query: 591 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 650
+ E + + L+ + V F D Y + A + + LQ
Sbjct: 33 GSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQ--- 89
Query: 651 SCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL-AIHHFEKAVSLDPNFLDAYINLGNVLK 709
+ + + A A G N + A KAV L+P ++A+ LG V
Sbjct: 90 -QMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW 148
Query: 710 EARIFDRA 717
+ A
Sbjct: 149 KKGDVTSA 156
Score = 73.1 bits (179), Expect = 1e-13
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQ-LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 284
+ + A+A G EA AV+L+P+ ++ + L GD+
Sbjct: 94 VLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDV 153
Query: 285 EQAVQAYVTALQYNP 299
A + AL +
Sbjct: 154 TSAHTCFSGALTHCK 168
Score = 70.8 bits (173), Expect = 8e-13
Identities = 17/145 (11%), Positives = 38/145 (26%), Gaps = 5/145 (3%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
++ + + N ++K EALE + A L P + + L +
Sbjct: 250 VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLT 309
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+++ L ++ + +L P
Sbjct: 310 SLLESKGKTKPKKLQSMLGSLRPAHLGPCGDG-----RYQSASGQKMTLELKPLSTLQPG 364
Query: 697 FLDAYINLGNVLKEARIFDRANTLF 721
+ LG V+ ++ F
Sbjct: 365 VNSGTVVLGKVVFSLTTEEKVPFTF 389
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 138 bits (347), Expect = 9e-34
Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 56/228 (24%)
Query: 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 131
P A++ +NL N+ +E+G ++EA+ YR A+ + P+F + NLA+ L G +++A+
Sbjct: 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64
Query: 132 AYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHT 191
Y A++ +P S++GN LK +
Sbjct: 65 HYKEAIRISPTFADAYSNMGNTLKEMQ--------------------------------- 91
Query: 192 ENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 251
VQ A+ C AI+ NP A+A+SNL +++K+ G +
Sbjct: 92 --------DVQGALQCYTR---------------AIQINPAFADAHSNLASIHKDSGNIP 128
Query: 252 EALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
EA+ +YR A++LKPDF D Y NLA L D + +
Sbjct: 129 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176
Score = 131 bits (329), Expect = 2e-31
Identities = 52/148 (35%), Positives = 80/148 (54%), Gaps = 11/148 (7%)
Query: 563 ECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 622
E ++++ A++ P A A+SNL +V +++G+LQEAL +Y+ A+R+ P F D Y
Sbjct: 21 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 80
Query: 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL 682
N+ L D++ A+Q CY +AI+ P FA A SNL + G I
Sbjct: 81 SNMGNTLKEMQDVQGALQ-----------CYTRAIQINPAFADAHSNLASIHKDSGNIPE 129
Query: 683 AIHHFEKAVSLDPNFLDAYINLGNVLKE 710
AI + A+ L P+F DAY NL + L+
Sbjct: 130 AIASYRTALKLKPDFPDAYCNLAHCLQI 157
Score = 130 bits (327), Expect = 3e-31
Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 640
P A++ +NL N+ +E+G ++EA+ YR A+ + P+F + NLA+ L G +++A+
Sbjct: 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64
Query: 641 AYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700
Y +AI P FA A+SN+G ++ A+ + +A+ ++P F DA
Sbjct: 65 -----------HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADA 113
Query: 701 YINLGNVLKEARIFDRANTLF 721
+ NL ++ K++ A +
Sbjct: 114 HSNLASIHKDSGNIPEAIASY 134
Score = 113 bits (283), Expect = 7e-26
Identities = 44/154 (28%), Positives = 77/154 (50%)
Query: 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP 73
LA+ + + G+ E A R + L+S+ Q KL ++ AI+ +P
Sbjct: 15 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74
Query: 74 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 133
A+AYSN+GN KE +Q AL+ Y A+++ P F D + NLA+ +G++ +A+ +Y
Sbjct: 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134
Query: 134 VTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
TAL+ PD +L + L+ + + +
Sbjct: 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168
Score = 112 bits (281), Expect = 1e-25
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 56/195 (28%)
Query: 105 LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK 164
P D NLA G++E+AV+ Y AL+ P+ S+L ++L+ G+L
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL---- 59
Query: 165 DLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFST 224
EA + E
Sbjct: 60 -------------------QEALMHYKE-------------------------------- 68
Query: 225 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 284
AI+ +P A+AYSN+GN KE +Q AL+ Y A+++ P F D + NLA+ +G++
Sbjct: 69 -AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI 127
Query: 285 EQAVQAYVTALQYNP 299
+A+ +Y TAL+ P
Sbjct: 128 PEAIASYRTALKLKP 142
Score = 112 bits (281), Expect = 1e-25
Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 11/156 (7%)
Query: 40 NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENY 99
+ L L++I + ++++ A++ P A A+SNL +V +++G+LQEAL +Y
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 66
Query: 100 RHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGR 159
+ A+R+ P F D Y N+ L D++ A+Q Y A+Q NP S+L ++ K G
Sbjct: 67 KEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN 126
Query: 160 LDEAKDLYC-----------VRSDLGNLLKALGRLD 184
+ EA Y +L + L+ +
Sbjct: 127 IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162
Score = 106 bits (266), Expect = 7e-24
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 563 ECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 622
+ KL ++ AI+ +P A+AYSN+GN KE +Q AL+ Y A+++ P F D +
Sbjct: 55 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAH 114
Query: 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL 682
NLA+ +G++ +A+ Y A++ +PDF A+ NL +
Sbjct: 115 SNLASIHKDSGNIPEAIA-----------SYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163
Query: 683 AIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRAN 718
+K VS+ + L+ L +V + +
Sbjct: 164 YDERMKKLVSIVADQLEKN-RLPSVHPHHSMLYPLS 198
Score = 91.4 bits (226), Expect = 4e-19
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 1/150 (0%)
Query: 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP 73
LA Q G + A H + R + + + + + + T AI+ NP
Sbjct: 49 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108
Query: 74 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 133
A+A+SNL +++K+ G + EA+ +YR A++LKPDF D Y NLA L D +
Sbjct: 109 AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168
Query: 134 VTALQYNPDLYCVRSDLGNLLKALGRLDEA 163
+ D ++ L ++ L
Sbjct: 169 KKLVSIVAD-QLEKNRLPSVHPHHSMLYPL 197
Score = 88.7 bits (219), Expect = 3e-18
Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 11/104 (10%)
Query: 614 LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCV 673
P D NLA G++E+AV+ Y KA+E P+FA A SNL V
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVR-----------LYRKALEVFPEFAAAHSNLASV 52
Query: 674 FNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
QG++ A+ H+++A+ + P F DAY N+GN LKE + A
Sbjct: 53 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGA 96
Score = 79.9 bits (196), Expect = 2e-15
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Query: 563 ECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 622
E + + + T AI+ NP A+A+SNL +++K+ G + EA+ +YR A++LKPDF D Y
Sbjct: 89 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY 148
Query: 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL 682
NLA L D + K + D + L V ++
Sbjct: 149 CNLAHCLQIVCDWTDYDER-----------MKKLVSIVADQLEK-NRLPSVHPHHSMLYP 196
Query: 683 AIHHFEKAVS 692
H F KA++
Sbjct: 197 LSHGFRKAIA 206
Score = 33.6 bits (76), Expect = 0.30
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 692 SLDPNFLDAYINLGNVLKEARIFDRANTLF 721
P D+ NL N+ +E + A L+
Sbjct: 3 GSCPTHADSLNNLANIKREQGNIEEAVRLY 32
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 135 bits (341), Expect = 1e-32
Identities = 32/243 (13%), Positives = 61/243 (25%), Gaps = 45/243 (18%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A P A ++ + +Q L A L PD + + A ++
Sbjct: 218 AHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQ 277
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNL 176
+ + A PD + G +AL + + C +
Sbjct: 278 RLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGG 337
Query: 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEA 236
+AL + + + A P A
Sbjct: 338 KQALETVQRLLPVLCQ---------------------------------AHGLTPDQVVA 364
Query: 237 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
++ G + +Q L A L PD + + A +++ + A
Sbjct: 365 IASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHG 423
Query: 297 YNP 299
P
Sbjct: 424 LTP 426
Score = 130 bits (329), Expect = 4e-31
Identities = 30/243 (12%), Positives = 59/243 (24%), Gaps = 44/243 (18%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
+ P A ++ + +Q L A L P + + A M+
Sbjct: 184 PLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQ 243
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNL 176
+ + A PD + +AL + + C + G
Sbjct: 244 RLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGG 303
Query: 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEA 236
+AL + + + A P A
Sbjct: 304 KQALETVQRLLPVLCQ---------------------------------AHGLTPDQVVA 330
Query: 237 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
++ + +Q L A L PD + + A +++ + A
Sbjct: 331 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 390
Query: 297 YNP 299
P
Sbjct: 391 LTP 393
Score = 130 bits (328), Expect = 5e-31
Identities = 41/297 (13%), Positives = 75/297 (25%), Gaps = 32/297 (10%)
Query: 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAH 63
IA G L + Q + + + +
Sbjct: 229 IASHDGGKQAL-------ETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLP 281
Query: 64 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 123
A P A ++ G + +Q L A L PD + + A
Sbjct: 282 VLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL 341
Query: 124 GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRL 183
+++ + A PD + G +AL + + C
Sbjct: 342 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC--------------- 386
Query: 184 DEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTL-AIKQNPLLAEAYSNLGN 242
+A L + + AI N G + T++ A P A ++
Sbjct: 387 -QAHGLTPDQVV--------AIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDG 437
Query: 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+ +Q L L P + + A ++Q + A P
Sbjct: 438 GKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTP 494
Score = 124 bits (313), Expect = 4e-29
Identities = 30/243 (12%), Positives = 59/243 (24%), Gaps = 44/243 (18%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A P A ++ + +Q L A L PD + + A ++
Sbjct: 489 AHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 548
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNL 176
+ + A PD + G +AL + + C +
Sbjct: 549 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGG 608
Query: 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEA 236
+AL + + + A P A
Sbjct: 609 KQALETVQRLLPVLCQ---------------------------------AHGLTPAQVVA 635
Query: 237 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
++ + +Q L A L PD + + A +++ + A
Sbjct: 636 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 695
Query: 297 YNP 299
Sbjct: 696 LTQ 698
Score = 117 bits (294), Expect = 5e-27
Identities = 29/243 (11%), Positives = 55/243 (22%), Gaps = 44/243 (18%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A P A ++ + +Q L L P + + A ++
Sbjct: 421 AHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQ 480
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNL 176
Q + A PD + +AL + + C + G
Sbjct: 481 QLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGG 540
Query: 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEA 236
+AL + A P A
Sbjct: 541 KQALETVQRL---------------------------------LPVLCQAHGLTPDQVVA 567
Query: 237 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
++ G + +Q L A L + + A +++ + A
Sbjct: 568 IASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHG 627
Query: 297 YNP 299
P
Sbjct: 628 LTP 630
Score = 115 bits (290), Expect = 2e-26
Identities = 29/248 (11%), Positives = 62/248 (25%), Gaps = 49/248 (19%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR-----LKPDFIDGYINLAAALVA 122
++ PL + + + EA+ R+A+ L P + + A
Sbjct: 145 ELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQA 204
Query: 123 AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRS 171
+++ + A P + +AL + + C +
Sbjct: 205 LETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIA 264
Query: 172 DLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNP 231
+AL + + + A P
Sbjct: 265 SNIGGKQALETVQRLLPVLCQ---------------------------------AHGLTP 291
Query: 232 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291
A ++ G + +Q L A L PD + + A +++ +
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 351
Query: 292 VTALQYNP 299
A P
Sbjct: 352 CQAHGLTP 359
Score = 115 bits (290), Expect = 2e-26
Identities = 28/297 (9%), Positives = 64/297 (21%), Gaps = 44/297 (14%)
Query: 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP 73
+ + Q + + + + A
Sbjct: 537 NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ 596
Query: 74 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 133
+ A ++ + +Q L A L P + + A +++ +
Sbjct: 597 VQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVL 656
Query: 134 VTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNLLKALGR 182
A PD + G +AL + + C + +AL
Sbjct: 657 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALET 716
Query: 183 LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242
+ + + A P A ++ G
Sbjct: 717 VQRLLPVLCQ---------------------------------AHGLTPDQVVAIASNGG 743
Query: 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+ +Q L A L P + + A +++ +
Sbjct: 744 GKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 800
Score = 113 bits (285), Expect = 7e-26
Identities = 22/141 (15%), Positives = 42/141 (29%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ + +Q L A L PD + + A ++
Sbjct: 218 AHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQ 277
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A PD VA ++ G A + + +A L P+
Sbjct: 278 RLLPVLC-----------QAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPD 326
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ A + + R
Sbjct: 327 QVVAIASHDGGKQALETVQRL 347
Score = 112 bits (282), Expect = 2e-25
Identities = 22/141 (15%), Positives = 42/141 (29%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ + +Q L A L PD + + A ++
Sbjct: 252 AHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQ 311
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A PD VA ++ A + + +A L P+
Sbjct: 312 RLLP-----------VLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPD 360
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ A + G + R
Sbjct: 361 QVVAIASNGGGKQALETVQRL 381
Score = 110 bits (276), Expect = 9e-25
Identities = 40/311 (12%), Positives = 78/311 (25%), Gaps = 23/311 (7%)
Query: 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAH 63
IA G L + Q + + +
Sbjct: 602 IASNIGGKQAL-------ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLP 654
Query: 64 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 123
A P A ++ G + +Q L A L + + + A
Sbjct: 655 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQAL 714
Query: 124 GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSD 172
+++ + A PD + G +AL + + C +
Sbjct: 715 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS 774
Query: 173 LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTL--AIKQN 230
+AL + + ++ +V AI N GG++ L A
Sbjct: 775 NIGGKQALETVQRLLPVLCQDHGLTLAQVV-AIASNIGGKQALETVQRLLPVLCQAHGLT 833
Query: 231 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA--V 288
A ++ + +Q L L PD + + A +++ V
Sbjct: 834 QDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPV 893
Query: 289 QAYVTALQYNP 299
L +
Sbjct: 894 LCQDHGLTLDQ 904
Score = 104 bits (261), Expect = 5e-23
Identities = 21/167 (12%), Positives = 42/167 (25%), Gaps = 22/167 (13%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ + +Q L A L PD + + A ++
Sbjct: 320 AHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 379
Query: 637 QAVQAYVTALQYNPS----------------------CYLKAIETRPDFAVAWSNLGCVF 674
+ + A P +A PD VA ++
Sbjct: 380 RLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGK 439
Query: 675 NAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLF 721
A + + + L P + A + + + +
Sbjct: 440 QALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVL 486
Score = 102 bits (256), Expect = 2e-22
Identities = 20/141 (14%), Positives = 41/141 (29%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ + +Q L A L PD + + A ++
Sbjct: 625 AHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 684
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A + VA ++ A + + +A L P+
Sbjct: 685 RLLPVLC-----------QAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPD 733
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ A + G + R
Sbjct: 734 QVVAIASNGGGKQALETVQRL 754
Score = 102 bits (254), Expect = 3e-22
Identities = 23/164 (14%), Positives = 43/164 (26%), Gaps = 23/164 (14%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ G + +Q L A L PD + + A ++
Sbjct: 523 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 582
Query: 637 QAVQAYVTALQYNP-----------------------SCYLKAIETRPDFAVAWSNLGCV 673
+ + A +A P VA ++
Sbjct: 583 RLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGG 642
Query: 674 FNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A + + +A L P+ + A + G + R
Sbjct: 643 KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 686
Score = 101 bits (253), Expect = 5e-22
Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
+ P A ++ + +Q L A L P + + A M+
Sbjct: 184 PLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQ 243
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A PD VA ++ A + + +A L P+
Sbjct: 244 RLLP-----------VLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPD 292
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ A + G + R
Sbjct: 293 QVVAIASHGGGKQALETVQRL 313
Score = 101 bits (252), Expect = 6e-22
Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 11/131 (8%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ G + +Q L A L PD + + A ++
Sbjct: 286 AHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQ 345
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A PD VA ++ G A + + +A L P+
Sbjct: 346 RLLP-----------VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 394
Query: 697 FLDAYINLGNV 707
+ A + G
Sbjct: 395 QVVAIASNGGK 405
Score = 100 bits (250), Expect = 1e-21
Identities = 19/141 (13%), Positives = 39/141 (27%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A + A ++ + +Q L A L P + + A ++
Sbjct: 591 AHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQ 650
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A PD VA ++ G A + + +A L
Sbjct: 651 RLLPVLC-----------QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQE 699
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ A + + R
Sbjct: 700 QVVAIASNNGGKQALETVQRL 720
Score = 99.3 bits (247), Expect = 2e-21
Identities = 24/164 (14%), Positives = 43/164 (26%), Gaps = 23/164 (14%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ + +Q L L P + + A ++
Sbjct: 421 AHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQ 480
Query: 637 QAVQAYVTALQYNPS-----------------------CYLKAIETRPDFAVAWSNLGCV 673
Q + A P +A PD VA ++ G
Sbjct: 481 QLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGG 540
Query: 674 FNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A + + +A L P+ + A + G + R
Sbjct: 541 KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 584
Score = 99.3 bits (247), Expect = 3e-21
Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ G + +Q L A L + + + A ++
Sbjct: 659 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQ 718
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A PD VA ++ G A + + +A L P
Sbjct: 719 RLLPV-----------LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPA 767
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ A + + R
Sbjct: 768 QVVAIASNIGGKQALETVQRL 788
Score = 94.7 bits (235), Expect = 6e-20
Identities = 21/164 (12%), Positives = 40/164 (24%), Gaps = 23/164 (14%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ + +Q L A L PD + + A ++
Sbjct: 489 AHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 548
Query: 637 QAVQAYVTALQYNP-----------------------SCYLKAIETRPDFAVAWSNLGCV 673
+ + A P +A VA ++
Sbjct: 549 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGG 608
Query: 674 FNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A + + +A L P + A + + R
Sbjct: 609 KQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRL 652
Score = 78.1 bits (192), Expect = 9e-15
Identities = 40/228 (17%), Positives = 67/228 (29%), Gaps = 17/228 (7%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
++A + G Q+ E ++KP ALV G A++
Sbjct: 43 SDASPAAQVDLRTLGYSQQQQE------KIKPKVRSTVAQHHEALVGHG----FTHAHIV 92
Query: 136 ALQYNPD-LYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENI 194
AL +P L V +++ AL D+ V L +A L +
Sbjct: 93 ALSQHPAALGTVAVTYQHIITALPEATHE-DIVGVGKQWSGARALEALLTDAGELRGPPL 151
Query: 195 KPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ---NPLLAEAYSNLGNVYKERGQLQ 251
+ T Q + GG A + L P A ++ + +Q
Sbjct: 152 QLDTG--QLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQ 209
Query: 252 EALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
L A L P + + A M++ + A P
Sbjct: 210 RLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPP 257
Score = 77.4 bits (190), Expect = 1e-14
Identities = 34/275 (12%), Positives = 69/275 (25%), Gaps = 41/275 (14%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A P A ++ + +Q L L + + A ++
Sbjct: 761 AHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQ 820
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNL 176
+ + A D + +AL + + C +
Sbjct: 821 RLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGG 880
Query: 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESA-HFSTLAIKQNPLLAE 235
+AL + + ++ +T+ AI N G + T++ P
Sbjct: 881 KQALETVQRLLPVLCQDHG-LTLDQVVAIASNGGKQALETVQRLLPVLCQDHGLTPDQVV 939
Query: 236 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL--------------------- 274
A ++ + +Q L L P+ + +
Sbjct: 940 AIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASNGGKQALESIVAQLSRPDPALA 999
Query: 275 ------AAALVAAGDMEQAVQAYVTALQYNPLLKK 303
AL G A+ A L + P L +
Sbjct: 1000 ALTNDHLVALACLGG-RPAMDAVKKGLPHAPELIR 1033
Score = 73.1 bits (179), Expect = 3e-13
Identities = 19/164 (11%), Positives = 40/164 (24%), Gaps = 23/164 (14%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ G + +Q L A L P + + A ++
Sbjct: 727 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQ 786
Query: 637 QAVQAYVTALQYNPS-----------------------CYLKAIETRPDFAVAWSNLGCV 673
+ + + +A D VA ++
Sbjct: 787 RLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGG 846
Query: 674 FNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A + + + L P+ + A + + R
Sbjct: 847 KQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRL 890
Score = 68.5 bits (167), Expect = 7e-12
Identities = 25/151 (16%), Positives = 39/151 (25%), Gaps = 6/151 (3%)
Query: 567 LDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLA 626
L A I P + EAL +R P +D +
Sbjct: 101 LGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVK 160
Query: 627 AALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHH 686
A +AV A AL + P VA ++ A + +
Sbjct: 161 IAKRGGVTAMEAVHASRNAL------TGAPLNLTPAQVVAIASNNGGKQALETVQRLLPV 214
Query: 687 FEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+A L P + A + + R
Sbjct: 215 LCQAHGLTPAQVVAIASHDGGKQALETMQRL 245
Score = 56.6 bits (136), Expect = 3e-08
Identities = 21/166 (12%), Positives = 41/166 (24%), Gaps = 22/166 (13%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A A ++ + +Q L L PD + + A ++
Sbjct: 829 AHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQ 888
Query: 637 QA--VQAYVTALQYNPS--------------------CYLKAIETRPDFAVAWSNLGCVF 674
+ V L + + PD VA ++
Sbjct: 889 RLLPVLCQDHGLTLDQVVAIASNGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGK 948
Query: 675 NAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTL 720
A + + + L PN + A + G I + +
Sbjct: 949 QALETVQRLLPVLCQDHGLTPNQVVAIASNGGKQALESIVAQLSRP 994
Score = 53.1 bits (127), Expect = 4e-07
Identities = 16/141 (11%), Positives = 36/141 (25%), Gaps = 12/141 (8%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A ++ + +Q L A L D + + A ++
Sbjct: 795 DHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQ 854
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + + PD VA ++ A + + + L +
Sbjct: 855 RLLPV-----------LCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLD 903
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ A + G + R
Sbjct: 904 QVVAIASNGGK-QALETVQRL 923
Score = 35.8 bits (82), Expect = 0.069
Identities = 14/111 (12%), Positives = 26/111 (23%), Gaps = 29/111 (26%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL----------- 625
P A ++ + +Q L L P+ + +
Sbjct: 930 DHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASNGGKQALESIVA 989
Query: 626 ----------------AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETR 660
AL G A+ A L + P ++ + R
Sbjct: 990 QLSRPDPALAALTNDHLVALACLGG-RPAMDAVKKGLPHAPE-LIRRVNRR 1038
Score = 30.4 bits (68), Expect = 3.1
Identities = 16/75 (21%), Positives = 21/75 (28%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
I P + EAL +R P +D + A
Sbjct: 111 IITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAM 170
Query: 286 QAVQAYVTALQYNPL 300
+AV A AL PL
Sbjct: 171 EAVHASRNALTGAPL 185
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 122 bits (307), Expect = 2e-29
Identities = 42/319 (13%), Positives = 97/319 (30%), Gaps = 48/319 (15%)
Query: 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSS----------IHFQCRKLDKSAH 63
A Y G + + ++ + + S + + +++
Sbjct: 100 YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKV 159
Query: 64 FSTLAIKQNPLLAEAYSNLGNVY---KERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 120
A+++ P E S L Q A++ R A+RL PD + LA L
Sbjct: 160 CFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219
Query: 121 VA----AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-------- 168
+ + + AL+ P + V + D+A +L
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279
Query: 169 ---VRSDLGNLLKALGR-LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFST 224
+ +G +A + + + + + +A+ AH
Sbjct: 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAV--------------AHLKK 325
Query: 225 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG---YINLAAALVAA 281
A + N L S L +++ Q +EA ++ + + ++ +
Sbjct: 326 -ADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQ 384
Query: 282 -GDMEQAVQAYVTALQYNP 299
++A+ ++ ++ N
Sbjct: 385 MKCEDKAIHHFIEGVKINQ 403
Score = 113 bits (285), Expect = 9e-27
Identities = 34/288 (11%), Positives = 82/288 (28%), Gaps = 52/288 (18%)
Query: 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFST 66
L + L ++ + + E+ + + T VL + + + + DK+
Sbjct: 215 LALKLHKMRE---EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK 271
Query: 67 LAIKQNPLLAEAYSNLGNVYKERG-------------------QLQEALENYRHAVRLKP 107
A++ P A + +G Y+ + + A+ + + A
Sbjct: 272 KALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND 331
Query: 108 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
+ LA+ A E+A + + L+
Sbjct: 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP-----------------VAKQLLH 374
Query: 168 CVRSDLGNLLK-ALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLA 226
GN + D+A + E +K + ++ + +
Sbjct: 375 L---RYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMKDKLQKIAKMR------ 422
Query: 227 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 274
+ +N +EA L + + ++Q+A E+ +
Sbjct: 423 LSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470
Score = 109 bits (273), Expect = 3e-25
Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 10/154 (6%)
Query: 560 LTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY---KERGQLQEALENYRHAVRLKP 616
L + +++ A+++ P E S L Q A++ R A+RL P
Sbjct: 147 LKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206
Query: 617 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNA 676
D + LA L M + + + +A+E P + +
Sbjct: 207 DNQYLKVLLALKL---HKMREEGEEEGEGEKL----VEEALEKAPGVTDVLRSAAKFYRR 259
Query: 677 QGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKE 710
+ E AI +KA+ PN + +G +
Sbjct: 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293
Score = 107 bits (268), Expect = 2e-24
Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 34/168 (20%)
Query: 577 AIKQNPLLAEAYSNLGNVY----KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 632
AI+ NP L +E + E + A+ P D + A
Sbjct: 201 AIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRK 260
Query: 633 GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE------------- 679
+ ++A++ KA+E P+ A +GC + A+
Sbjct: 261 DEPDKAIE-----------LLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGK 309
Query: 680 ------IWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLF 721
I A+ H +KA + N L ++ A ++ A F
Sbjct: 310 RKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYF 357
Score = 105 bits (264), Expect = 4e-24
Identities = 43/261 (16%), Positives = 74/261 (28%), Gaps = 46/261 (17%)
Query: 64 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL---------KPDFIDGYI 114
F + A + L + +GQ + ALE R A L + + +
Sbjct: 39 FYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWG 98
Query: 115 NLAAALVAAGDMEQAVQAYVTALQ--------YNPDLYCVRSDLGNLLKALG--RLDEAK 164
N A G + Y + + + G G + + AK
Sbjct: 99 NYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAK 158
Query: 165 DLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQN--AIVCNYGGRKPTTLESAHF 222
+ KAL KP + + AI P + +
Sbjct: 159 VCF---------EKAL------------EKKPKNPEFTSGLAIASYRLDNWPPSQNAIDP 197
Query: 223 STLAIKQNPLLAEAYSNLGNVY----KERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 278
AI+ NP L +E + E + A+ P D + A
Sbjct: 198 LRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFY 257
Query: 279 VAAGDMEQAVQAYVTALQYNP 299
+ ++A++ AL+Y P
Sbjct: 258 RRKDEPDKAIELLKKALEYIP 278
Score = 98.1 bits (244), Expect = 1e-21
Identities = 16/147 (10%), Positives = 42/147 (28%), Gaps = 17/147 (11%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG---YINLAAALVAA- 632
A + N L S L +++ Q +EA ++ + + ++ +
Sbjct: 326 ADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQM 385
Query: 633 GDMEQAVQAYVTALQYNPSCY-------------LKAIETRPDFAVAWSNLGCVFNAQGE 679
++A+ ++ ++ N + + A L + +
Sbjct: 386 KCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEK 445
Query: 680 IWLAIHHFEKAVSLDPNFLDAYINLGN 706
+ A E+ + A G
Sbjct: 446 MQQADEDSERGLESGSLIPSASSWNGE 472
Score = 94.2 bits (234), Expect = 3e-20
Identities = 28/183 (15%), Positives = 47/183 (25%), Gaps = 45/183 (24%)
Query: 573 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL---------KPDFIDGYI 623
F + A + L + +GQ + ALE R A L + + +
Sbjct: 39 FYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWG 98
Query: 624 NLAAALVAAGDMEQAVQAYVTALQYNP--------------------------------- 650
N A G +
Sbjct: 99 NYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAK 158
Query: 651 SCYLKAIETRPDFAVAWSNLGCVF---NAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNV 707
C+ KA+E +P S L + AI +A+ L+P+ + L
Sbjct: 159 VCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALK 218
Query: 708 LKE 710
L +
Sbjct: 219 LHK 221
Score = 82.7 bits (204), Expect = 1e-16
Identities = 17/191 (8%), Positives = 45/191 (23%), Gaps = 56/191 (29%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG-------------------QLQEALE 606
+ DK+ A++ P A + +G Y+ + + A+
Sbjct: 262 EPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVA 321
Query: 607 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP---------------- 650
+ + A + LA+ A E+A +
Sbjct: 322 HLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ 381
Query: 651 -----------SCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699
+++ ++ + + +S + +
Sbjct: 382 LYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIA----------KMRLSKNGADSE 431
Query: 700 AYINLGNVLKE 710
A L + +
Sbjct: 432 ALHVLAFLQEL 442
Score = 54.6 bits (131), Expect = 1e-07
Identities = 20/115 (17%), Positives = 30/115 (26%), Gaps = 11/115 (9%)
Query: 217 LESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL---------KPDF 267
E F + A + L + +GQ + ALE R A L +
Sbjct: 34 FEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRS 93
Query: 268 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKAL 322
+ + N A G + K + E LD E
Sbjct: 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE--KFSSPYRIESPELDCEEGWTR 146
Score = 50.3 bits (120), Expect = 2e-06
Identities = 19/177 (10%), Positives = 47/177 (26%), Gaps = 28/177 (15%)
Query: 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAH 63
+ + + + A H + N V +L+S+H + +++ +
Sbjct: 296 FQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEY 355
Query: 64 FSTLAIKQNPLLAEA---YSNLGNV-YKERGQLQEALENYRHAVRLKPDFIDG------- 112
+ + + GN + +A+ ++ V++ +
Sbjct: 356 YFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKL 415
Query: 113 -----------------YINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGN 152
LA M+QA + L+ + S G
Sbjct: 416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 120 bits (302), Expect = 2e-28
Identities = 21/146 (14%), Positives = 38/146 (26%), Gaps = 11/146 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++ P A+ L + G + + L P + L
Sbjct: 15 AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHA 74
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+A +A + P+ LG G+ A + +A L P
Sbjct: 75 EAAV-----------LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123
Query: 697 FLDAYINLGNVLKEARIFDRANTLFY 722
L N + + + L
Sbjct: 124 EPYITAQLLNWRRRLCDWRALDVLSA 149
Score = 111 bits (278), Expect = 2e-25
Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 11/123 (8%)
Query: 599 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIE 658
L R AVR +P ++ LA A + GD + +
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEM-----------AVQRGLA 51
Query: 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRAN 718
P A + LG V Q A ++A P + LG+ L++A + A
Sbjct: 52 LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAA 111
Query: 719 TLF 721
+
Sbjct: 112 AAY 114
Score = 108 bits (271), Expect = 1e-24
Identities = 33/198 (16%), Positives = 47/198 (23%), Gaps = 56/198 (28%)
Query: 90 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSD 149
L R AVR +P ++ LA A + GD A L +P +
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62
Query: 150 LGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNY 209
LG + R EA L +
Sbjct: 63 LGRVRWTQ-----------------------QRHAEAAVLLQQ----------------- 82
Query: 210 GGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 269
A P LG+ ++ GQ + A Y A +L P+
Sbjct: 83 ----------------ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY 126
Query: 270 GYINLAAALVAAGDMEQA 287
L D
Sbjct: 127 ITAQLLNWRRRLCDWRAL 144
Score = 107 bits (268), Expect = 3e-24
Identities = 33/161 (20%), Positives = 52/161 (32%), Gaps = 1/161 (0%)
Query: 21 AGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYS 80
D R + L+L+ + +P EA +
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 81 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 140
LG V + + EA + A P+ + L AL AG E A AY A Q
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121
Query: 141 PDLYCVRSDLGNLLKALGRLDEAKDLYC-VRSDLGNLLKAL 180
P+ + + L N + L L VR+ + + A+
Sbjct: 122 PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAV 162
Score = 93.0 bits (231), Expect = 1e-19
Identities = 27/177 (15%), Positives = 44/177 (24%), Gaps = 56/177 (31%)
Query: 123 AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGR 182
D + + A+++ P + L + +G
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDT---------------------- 39
Query: 183 LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242
+ + +P EA + LG
Sbjct: 40 -TAGEMAVQR---------------------------------GLALHPGHPEAVARLGR 65
Query: 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
V + + EA + A P+ + L AL AG E A AY A Q P
Sbjct: 66 VRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122
Score = 89.1 bits (221), Expect = 2e-18
Identities = 26/158 (16%), Positives = 43/158 (27%), Gaps = 14/158 (8%)
Query: 563 ECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 622
+ +P EA + LG V + + EA + A P+
Sbjct: 35 GMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIA 94
Query: 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL 682
+ L AL AG E A Y +A + P+ + L +
Sbjct: 95 LWLGHALEDAGQAEAAAA-----------AYTRAHQLLPEEPYITAQLLNWRRRLCDWRA 143
Query: 683 A---IHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
AV+ ++ + L A A
Sbjct: 144 LDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACA 181
Score = 83.7 bits (207), Expect = 7e-17
Identities = 22/119 (18%), Positives = 38/119 (31%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
L LA E GD + E + + + L + + ++ ++A A
Sbjct: 26 WLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD 85
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
P LG+ ++ GQ + A Y A +L P+ L D
Sbjct: 86 AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRAL 144
Score = 73.7 bits (181), Expect = 1e-13
Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 11/90 (12%)
Query: 632 AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691
D + + A+ RP VAW L G+ ++ +
Sbjct: 2 TADGPRELL-----------QLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL 50
Query: 692 SLDPNFLDAYINLGNVLKEARIFDRANTLF 721
+L P +A LG V + A L
Sbjct: 51 ALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80
Score = 40.2 bits (94), Expect = 0.003
Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 3/116 (2%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
+ L + + A Q + G+ L L + + +A T A +
Sbjct: 60 VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119
Query: 71 QNPLLAEAYSNLGNVYK---ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 123
P + L N + + L R AV ++ + L+ AA
Sbjct: 120 LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAA 175
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 112 bits (281), Expect = 3e-28
Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 12/155 (7%)
Query: 568 DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 627
++ T K + + ++ + L YK+ +A Y+ ++ P+ +D A
Sbjct: 37 RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE 96
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL-AIHH 686
V G + A++ Y K ++ D A LG + E +
Sbjct: 97 MQVCRGQEKDALR-----------MYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLET 145
Query: 687 FEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLF 721
K +S A G +++A
Sbjct: 146 DYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSL 180
Score = 107 bits (268), Expect = 2e-26
Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 11/152 (7%)
Query: 565 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 624
R DK+ F +++ P + + RGQ ++AL Y ++L+ D + I
Sbjct: 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIF 127
Query: 625 LAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAI 684
L + E+ L+ K + + A G A
Sbjct: 128 LGNYYYLTAEQEKK------KLET----DYKKLSSPTKMQYARYRDGLSKLFTTRYEKAR 177
Query: 685 HHFEKAVSLDPNFLDAYINLGNVLKEARIFDR 716
+ +K + P+ +A L +L+ + +R
Sbjct: 178 NSLQKVILRFPST-EAQKTLDKILRIEKEVNR 208
Score = 103 bits (259), Expect = 3e-25
Identities = 30/241 (12%), Positives = 58/241 (24%), Gaps = 73/241 (30%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI----------------NLAAA 119
+ + E GQ +A+ +R + L D + Y LA A
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63
Query: 120 LVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKA 179
+ ++A Y LQ P N + L +
Sbjct: 64 YKKNRNYDKAYLFYKELLQKAP----------NNVDCL-------------EACAEMQVC 100
Query: 180 LGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSN 239
G+ +A ++ + ++ A
Sbjct: 101 RGQEKDALRMYEK---------------------------------ILQLEADNLAANIF 127
Query: 240 LGNVYKERGQL-QEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 298
LGN Y + ++ LE + + + E+A + +
Sbjct: 128 LGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187
Query: 299 P 299
P
Sbjct: 188 P 188
Score = 98.3 bits (245), Expect = 2e-23
Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 27/142 (19%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI----------------NLAAA 628
+ + E GQ +A+ +R + L D + Y LA A
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63
Query: 629 LVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFE 688
+ ++A Y + ++ P+ + +G+ A+ +E
Sbjct: 64 YKKNRNYDKAYL-----------FYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYE 112
Query: 689 KAVSLDPNFLDAYINLGNVLKE 710
K + L+ + L A I LGN
Sbjct: 113 KILQLEADNLAANIFLGNYYYL 134
Score = 94.8 bits (236), Expect = 3e-22
Identities = 35/276 (12%), Positives = 71/276 (25%), Gaps = 74/276 (26%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
+L+ +AG A + Q + T ++ T K
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT------------------EMYYWTNVDK 48
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
+ + ++ + L YK+ +A Y+ ++ P+ +D A V G + A+
Sbjct: 49 NSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDAL 108
Query: 131 QAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLH 190
+ Y LQ D LGN ++ K L + +
Sbjct: 109 RMYEKILQLEADNLAANIFLGNYYYLTAEQEK---------------KKLETDYKKLSSP 153
Query: 191 TENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 250
T+ A G +
Sbjct: 154 TKM----------------------------------------QYARYRDGLSKLFTTRY 173
Query: 251 QEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 286
++A + + + P L L ++ +
Sbjct: 174 EKARNSLQKVILRFPSTEAQK-TLDKILRIEKEVNR 208
Score = 89.4 bits (222), Expect = 2e-20
Identities = 27/192 (14%), Positives = 56/192 (29%), Gaps = 41/192 (21%)
Query: 109 FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC 168
+D + +A + AG QAV + + N D + ++
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT-------EMYYWTNVDKNSEISSK 55
Query: 169 VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIK 228
+ ++L K D+A + E ++
Sbjct: 56 LATELALAYKKNRNYDKAYLFYKE---------------------------------LLQ 82
Query: 229 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ-A 287
+ P + + RGQ ++AL Y ++L+ D + I L + E+
Sbjct: 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKK 142
Query: 288 VQAYVTALQYNP 299
++ L
Sbjct: 143 LETDYKKLSSPT 154
Score = 70.9 bits (174), Expect = 5e-14
Identities = 14/105 (13%), Positives = 31/105 (29%), Gaps = 5/105 (4%)
Query: 618 FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS-----CYLKAIETRPDFAVAWSNLGC 672
+D + +A + AG QAV + + N + + + + L
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62
Query: 673 VFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+ A +++ + PN +D + A
Sbjct: 63 AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDA 107
Score = 35.5 bits (82), Expect = 0.038
Identities = 7/58 (12%), Positives = 16/58 (27%)
Query: 663 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTL 720
G+ A+ +F + ++L+ + + Y A L
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATEL 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 111 bits (279), Expect = 3e-26
Identities = 58/319 (18%), Positives = 97/319 (30%), Gaps = 56/319 (17%)
Query: 1 MNDIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGV---LLLLSSIHFQCRK 57
M+ ++ + L G Q + + L L
Sbjct: 6 MSSLSASAENVSSLGLGSGGGGTNSHDG--NSQQGSGSDGGSSMCLELALEGERLCNAGD 63
Query: 58 LDKSAHF--STLAIKQN--PLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KP 107
F + + L+ YS LGN Y G +A++ ++H + L +
Sbjct: 64 CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123
Query: 108 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
NL L G ++A L + LG+ RL E + LY
Sbjct: 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLT-------LARQLGD------RLSEGRALY 170
Query: 168 CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAI 227
LGN+ A G+ +N V + A+ + L +
Sbjct: 171 N----LGNVYHAKGKHLGQRNPGKFGDD-VKEALTRAV-------------EFYQENLKL 212
Query: 228 KQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAA 277
+ A NLGN Y G Q A+E+++ +R+ + NL +
Sbjct: 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNS 272
Query: 278 LVAAGDMEQAVQAYVTALQ 296
+ G E A + Y L
Sbjct: 273 HIFLGQFEDAAEHYKRTLA 291
Score = 97.8 bits (244), Expect = 1e-21
Identities = 60/340 (17%), Positives = 109/340 (32%), Gaps = 93/340 (27%)
Query: 2 NDIAQLGIGLLELAHREYQAGDYESAE---RHCMQLWRQETNNTGV---LLLLSSIHFQC 55
D+ L +L + + GDY A +H + L + + G L +
Sbjct: 80 EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM 139
Query: 56 RKLDK--SAHFSTLAIKQ----NPLLAEAYSNLGNVYKERGQ-----------------L 92
+ D+ L + + A NLGNVY +G+ L
Sbjct: 140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEAL 199
Query: 93 QEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCV 146
A+E Y+ ++L + NL GD + A++ + L+ +
Sbjct: 200 TRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR-------I 252
Query: 147 RSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIV 206
+ G+ R E + S+LGN LG+ ++A +
Sbjct: 253 AREFGD------RAAERRAN----SNLGNSHIFLGQFEDAAEHYKR-------------- 288
Query: 207 CNYGGRKPTTLESAHFSTLAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVR 262
TLA+ + A++ +LGN Y + A+E + +
Sbjct: 289 -----------------TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331
Query: 263 L------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
+ + +L A A G E+A++ LQ
Sbjct: 332 IAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371
Score = 84.7 bits (210), Expect = 2e-17
Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 21/158 (13%)
Query: 576 LAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINL 625
L + + A NLGN Y G Q A+E+++ +R+ + NL
Sbjct: 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNL 269
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
+ + G E A + Y L + R A + +LG + E AI
Sbjct: 270 GNSHIFLGQFEDAAEHYKRTLALA-----VELGEREVEAQSCYSLGNTYTLLHEFNTAIE 324
Query: 686 HFEKAVSLD------PNFLDAYINLGNVLKEARIFDRA 717
+ + +++ A +LGN +RA
Sbjct: 325 YHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERA 362
Score = 83.1 bits (206), Expect = 7e-17
Identities = 35/173 (20%), Positives = 58/173 (33%), Gaps = 36/173 (20%)
Query: 576 LAIKQN--PLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAA 627
+ L+ YS LGN Y G +A++ ++H + L + NL
Sbjct: 75 IQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL----- 682
L G ++A L + + R A NLG V++A+G+
Sbjct: 135 TLKVMGRFDEAAICCERHLTLA-----RQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPG 189
Query: 683 ------------AIHHFEKAVSLDPNFLD------AYINLGNVLKEARIFDRA 717
A+ +++ + L + D A NLGN F A
Sbjct: 190 KFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAA 242
Score = 80.4 bits (199), Expect = 5e-16
Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 15/128 (11%)
Query: 576 LAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINL 625
L I + A SNLGN + GQ ++A E+Y+ + L + +L
Sbjct: 250 LRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSL 309
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
+ A++ + L + + R A A +LG +A G A+
Sbjct: 310 GNTYTLLHEFNTAIEYHNRHLAIA-----QELGDRIGEARACWSLGNAHSAIGGHERALK 364
Query: 686 HFEKAVSL 693
+ E+ + L
Sbjct: 365 YAEQHLQL 372
Score = 80.0 bits (198), Expect = 7e-16
Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 15/144 (10%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK----PDFIDGYINLAAALVAA 632
+ + G G + + ++ A++ Y L A
Sbjct: 40 GSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYL 99
Query: 633 GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
GD +A+Q + L K++ R A + NLG G A E+ ++
Sbjct: 100 GDYNKAMQYHKHDLTLA-----KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLT 154
Query: 693 LDPNFLD------AYINLGNVLKE 710
L D A NLGNV
Sbjct: 155 LARQLGDRLSEGRALYNLGNVYHA 178
Score = 48.1 bits (115), Expect = 8e-06
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 12/96 (12%)
Query: 22 GDYESAERHCMQ---LWRQETNNTGV---LLLLSSIHFQCRKLDK--SAHFSTLAIKQ-- 71
G +E A H + L + L + + + + H LAI Q
Sbjct: 277 GQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336
Query: 72 --NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL 105
A A +LGN + G + AL+ ++L
Sbjct: 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372
Score = 44.6 bits (106), Expect = 1e-04
Identities = 11/89 (12%), Positives = 23/89 (25%), Gaps = 9/89 (10%)
Query: 633 GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
G ++ Q + + + G G+ + F+ A+
Sbjct: 22 GSGGGGTNSHDGNSQQG-----SGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQ 76
Query: 693 L----DPNFLDAYINLGNVLKEARIFDRA 717
Y LGN +++A
Sbjct: 77 AGTEDLRTLSAIYSQLGNAYFYLGDYNKA 105
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 105 bits (264), Expect = 4e-25
Identities = 38/266 (14%), Positives = 81/266 (30%), Gaps = 67/266 (25%)
Query: 73 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAG 124
P +A + L VY+++ + +EA A+ ++ P NLA G
Sbjct: 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99
Query: 125 DMEQAVQAYVTALQ--------YNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRS----- 171
++A AL+ ++PD+ ++L L + G+ +E + Y R+
Sbjct: 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYY-RRALEIYA 158
Query: 172 ---------------DLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTT 216
+L + G+ +A+ L+ E +
Sbjct: 159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT---------------RAHEKE 203
Query: 217 LESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK------PDFIDG 270
S + + + + + + +++ + K P
Sbjct: 204 FGSVN---------GDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTT 254
Query: 271 YINLAAALVAAGDMEQAVQAYVTALQ 296
+L A G +E A A +
Sbjct: 255 LRSLGALYRRQGKLEAAHTLEDCASR 280
Score = 92.2 bits (230), Expect = 1e-20
Identities = 34/264 (12%), Positives = 71/264 (26%), Gaps = 69/264 (26%)
Query: 81 NLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAGDMEQAVQA 132
+ + A+ + A+ PD LA ++A
Sbjct: 6 HHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHL 65
Query: 133 YVTALQ--------YNPDLYCVRSDLGNLLKALGRLDEAKDLY----------------- 167
AL +P + ++L L G+ EA+ L
Sbjct: 66 LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD 125
Query: 168 --CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTL 225
++L L + G+ +E + + ++ T L
Sbjct: 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALE---------------IYA-TRLGPDD---- 165
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAV---RLK------PDFIDGYINLAA 276
P +A+ +NL + Y ++G+ Q+A Y+ + K D +++
Sbjct: 166 -----PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEE 220
Query: 277 ALVAAGDMEQAVQAYVTALQYNPL 300
+ + Y
Sbjct: 221 REESKDKRRDSAPYGEYGSWYKAC 244
Score = 76.0 bits (188), Expect = 3e-15
Identities = 26/154 (16%), Positives = 50/154 (32%), Gaps = 16/154 (10%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHA--VRLK------PDFIDGYINLAAALVAAG 633
P +A+ +NL + + +G+ +E YR A + P+ NLA+ + G
Sbjct: 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183
Query: 634 DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693
+ A Y L D W + ++ + + + E
Sbjct: 184 KYQDAETLYKEILTRAHEKEFG--SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWY 241
Query: 694 D------PNFLDAYINLGNVLKEARIFDRANTLF 721
P +LG + + + A+TL
Sbjct: 242 KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLE 275
Score = 69.9 bits (172), Expect = 4e-13
Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 36/165 (21%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHA--VRLK------PDFIDGYINLAAALVAAG 633
P +A +NL +Y +RG+ +EA + A +R K PD NLA G
Sbjct: 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG 141
Query: 634 DMEQAVQAYVTALQYNPSCYLKAIETR--------PDFAVAWSNLGCVFNAQGEIWLAIH 685
E+ Y +A+E P+ A +NL + QG+ A
Sbjct: 142 KAEEVE-----------YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET 190
Query: 686 HFEKAVSL---------DPNFLDAYINLGNVLKEARIFDRANTLF 721
+++ ++ + + +++ + +
Sbjct: 191 LYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYG 235
Score = 69.5 bits (171), Expect = 5e-13
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 35/164 (21%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAG 633
P +A + L VY+++ + +EA A+ ++ P NLA G
Sbjct: 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99
Query: 634 DMEQAVQAYVTALQYNPSCYLKAIETR--------PDFAVAWSNLGCVFNAQGEIWLAIH 685
++A +A+E R PD A +NL + QG+ +
Sbjct: 100 KYKEAE-----------PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148
Query: 686 HFEKAVSL--------DPNFLDAYINLGNVLKEARIFDRANTLF 721
++ +A+ + DPN NL + + + A TL+
Sbjct: 149 YYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY 192
Score = 60.6 bits (148), Expect = 5e-10
Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 16/119 (13%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAV---RLK------PDFIDGYINLAAALVAA 632
P +A+ +NL + Y ++G+ Q+A Y+ + K D +++ +
Sbjct: 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESK 225
Query: 633 GDMEQAVQAYVTALQYNPSCYLKAI-ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKA 690
+ Y KA P +LG ++ QG++ A + A
Sbjct: 226 DKRRDSAPYGEYGSWY------KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278
Score = 55.6 bits (135), Expect = 2e-08
Identities = 20/149 (13%), Positives = 43/149 (28%), Gaps = 21/149 (14%)
Query: 590 NLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAGDMEQAVQA 641
+ + A+ + A+ PD LA ++A
Sbjct: 6 HHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHL 65
Query: 642 YVTALQYNPSCYLKAI-ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD------ 694
AL K + + P A +NL ++ +G+ A ++A+ +
Sbjct: 66 LNDALAI----REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121
Query: 695 --PNFLDAYINLGNVLKEARIFDRANTLF 721
P+ NL + + + +
Sbjct: 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYY 150
Score = 53.7 bits (130), Expect = 8e-08
Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 6/73 (8%)
Query: 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK------PDFIDGYINLAAALVAAGD 125
N + + + + + +++ + K P +L A G
Sbjct: 208 NGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK 267
Query: 126 MEQAVQAYVTALQ 138
+E A A +
Sbjct: 268 LEAAHTLEDCASR 280
Score = 53.7 bits (130), Expect = 8e-08
Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 6/73 (8%)
Query: 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK------PDFIDGYINLAAALVAAGD 634
N + + + + + +++ + K P +L A G
Sbjct: 208 NGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK 267
Query: 635 MEQAVQAYVTALQ 647
+E A A +
Sbjct: 268 LEAAHTLEDCASR 280
Score = 35.6 bits (83), Expect = 0.061
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 73 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 106
P + +LG +Y+ +G+L+ A A R +
Sbjct: 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282
Score = 35.6 bits (83), Expect = 0.061
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 615
P + +LG +Y+ +G+L+ A A R +
Sbjct: 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 97.5 bits (244), Expect = 1e-24
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A GD ++A++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE---- 64
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG 678
Y KA+E P+ A A NLG QG
Sbjct: 65 -------YYQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 90.5 bits (226), Expect = 3e-22
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A GD ++A++ Y
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 136 ALQYNPDLYCVRSDLGNLLKALG 158
AL+ +P+ + +LGN + G
Sbjct: 69 ALELDPNNAEAKQNLGNAKQKQG 91
Score = 80.9 bits (201), Expect = 9e-19
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A GD ++A++ Y
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 294 ALQYNP 299
AL+ +P
Sbjct: 69 ALELDP 74
Score = 75.5 bits (187), Expect = 8e-17
Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 33/110 (30%)
Query: 173 LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL 232
LGN G DEA Y +K A++ +P
Sbjct: 15 LGNAYYKQGDYDEAIE-------------------YY--QK------------ALELDPN 41
Query: 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 282
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + NL A G
Sbjct: 42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 71.7 bits (177), Expect = 2e-15
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 40 NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENY 99
N G ++ D++ + A++ +P AEA+ NLGN Y ++G EA+E Y
Sbjct: 13 YNLGNAY------YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 100 RHAVRLKPDFIDGYINLAAALVAAG 124
+ A+ L P+ + NL A G
Sbjct: 67 QKALELDPNNAEAKQNLGNAKQKQG 91
Score = 71.3 bits (176), Expect = 2e-15
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 633
A++ +P AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + NL A G
Sbjct: 35 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 67.4 bits (166), Expect = 5e-14
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 661 PDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+ A AW NLG + QG+ AI +++KA+ LDPN +A+ NLGN + +D A
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Score = 33.5 bits (78), Expect = 0.037
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 265 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+ + + NL A GD ++A++ Y AL+ +P
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 40
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 103 bits (258), Expect = 4e-24
Identities = 38/265 (14%), Positives = 80/265 (30%), Gaps = 65/265 (24%)
Query: 73 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAG 124
P +A + L VY+++ + ++A A+ ++ P NLA G
Sbjct: 66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 125
Query: 125 DMEQAVQAYVTALQ--------YNPDLYCVRSDLGNLLKALGRLDEAKDLY--------- 167
++A AL+ +PD+ ++L L + G+ +E + Y
Sbjct: 126 KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185
Query: 168 ----------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTL 217
+++L + G+ +A+ L+ E + +
Sbjct: 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE---------------F 230
Query: 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK------PDFIDGY 271
S + + + +G+ ++ + K P
Sbjct: 231 GSVD---------DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTL 281
Query: 272 INLAAALVAAGDMEQAVQAYVTALQ 296
NL A G E A A++
Sbjct: 282 KNLGALYRRQGKFEAAETLEEAAMR 306
Score = 98.4 bits (246), Expect = 1e-22
Identities = 36/272 (13%), Positives = 75/272 (27%), Gaps = 69/272 (25%)
Query: 73 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAG 124
P NL Y +G+ + A+ + A+ PD LA
Sbjct: 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN 83
Query: 125 DMEQAVQAYVTALQ--------YNPDLYCVRSDLGNLLKALGRLDEAKDLY--------- 167
+ A AL +P + ++L L G+ EA+ L
Sbjct: 84 KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143
Query: 168 ----------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTL 217
++L L + G+ +E + + ++ + T L
Sbjct: 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE---------------IYQ-TKL 187
Query: 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHA---VRLK------PDFI 268
+ A+ +NL + Y ++G+ ++A Y+ + +
Sbjct: 188 GPDDPNV---------AKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238
Query: 269 DGYINLAAALVAAGDMEQAVQAYVTALQYNPL 300
+++ G + Y
Sbjct: 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKAC 270
Score = 75.3 bits (186), Expect = 7e-15
Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 18/155 (11%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAG 633
P +A+ +NL + + +G+ +E Y+ A+ + P+ NLA+ + G
Sbjct: 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG 209
Query: 634 DMEQAVQAYVTALQYNPSCYLKAI-ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
+QA Y L + + + W + +G+ E
Sbjct: 210 KFKQAETLYKEILT---RAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266
Query: 693 LD------PNFLDAYINLGNVLKEARIFDRANTLF 721
P NLG + + F+ A TL
Sbjct: 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301
Score = 74.5 bits (184), Expect = 2e-14
Identities = 30/200 (15%), Positives = 60/200 (30%), Gaps = 49/200 (24%)
Query: 73 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAG 124
P +A+ +NL + + +G+ +E Y+ A+ + P+ NLA+ + G
Sbjct: 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG 209
Query: 125 DMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLD 184
+QA Y L + G + + + G+
Sbjct: 210 KFKQAETLYKEILT------------RAHEREFG--SVDDENKPIWMHAEEREECKGKQK 255
Query: 185 EAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVY 244
+ + K PT + NLG +Y
Sbjct: 256 DGTSFGEYGGW---YKA-------CKVDSPTVTTT-----------------LKNLGALY 288
Query: 245 KERGQLQEALENYRHAVRLK 264
+ +G+ + A A+R +
Sbjct: 289 RRQGKFEAAETLEEAAMRSR 308
Score = 72.6 bits (179), Expect = 7e-14
Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 36/165 (21%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHA--VRLK------PDFIDGYINLAAALVAAG 633
P +A +NL +Y +RG+ +EA + A +R K PD NLA G
Sbjct: 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG 167
Query: 634 DMEQAVQAYVTALQYNPSCYLKAIETR--------PDFAVAWSNLGCVFNAQGEIWLAIH 685
E+ Y +A+E P+ A +NL + QG+ A
Sbjct: 168 KYEEVE-----------YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET 216
Query: 686 HFEKAVSL---------DPNFLDAYINLGNVLKEARIFDRANTLF 721
+++ ++ D +++ + +
Sbjct: 217 LYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFG 261
Score = 68.7 bits (169), Expect = 1e-12
Identities = 25/157 (15%), Positives = 49/157 (31%), Gaps = 21/157 (13%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAG 633
P NL Y +G+ + A+ + A+ PD LA
Sbjct: 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN 83
Query: 634 DMEQAVQAYVTALQYNPSCYLKAI-ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
+ A AL K + + P A +NL ++ +G+ A ++A+
Sbjct: 84 KYKDAANLLNDALA----IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 139
Query: 693 LD--------PNFLDAYINLGNVLKEARIFDRANTLF 721
+ P+ NL + + ++ +
Sbjct: 140 IREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 176
Score = 60.2 bits (147), Expect = 7e-10
Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 14/121 (11%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHA---VRLK------PDFIDGYINLAAALVAA 632
P +A+ +NL + Y ++G+ ++A Y+ + + +++
Sbjct: 192 PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECK 251
Query: 633 GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
G + Y P NLG ++ QG+ A E A+
Sbjct: 252 GKQKDGTSFGEYGGWYK-----ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306
Query: 693 L 693
Sbjct: 307 S 307
Score = 51.4 bits (124), Expect = 6e-07
Identities = 10/73 (13%), Positives = 21/73 (28%), Gaps = 6/73 (8%)
Query: 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK------PDFIDGYINLAAALVAAGD 634
+ + + + +G+ ++ + K P NL A G
Sbjct: 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK 293
Query: 635 MEQAVQAYVTALQ 647
E A A++
Sbjct: 294 FEAAETLEEAAMR 306
Score = 37.1 bits (87), Expect = 0.022
Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 15/103 (14%)
Query: 19 YQAGDYESAERHCMQ----LWRQE--TNNTGVLLLLSSI---HFQCRKLDKSAHFSTLAI 69
+ G ++ AE + +E + + + K F
Sbjct: 206 LKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265
Query: 70 KQN------PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 106
P + NLG +Y+ +G+ + A A+R +
Sbjct: 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308
Score = 36.0 bits (84), Expect = 0.040
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 615
P + NLG +Y+ +G+ + A A+R +
Sbjct: 275 PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 103 bits (258), Expect = 6e-24
Identities = 53/315 (16%), Positives = 93/315 (29%), Gaps = 60/315 (19%)
Query: 11 LLELAHREYQAGDYESAERH---CMQLWRQETNNTGVLLL-LSSIHFQCRKLDK--SAHF 64
L R ++GD + +Q+ ++ + L + +F K H
Sbjct: 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 67
Query: 65 STLAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYI 114
L + + A+A NLGN K G EA+ + + + K
Sbjct: 68 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 127
Query: 115 NLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALG-------RLDEAKDLY 167
NL A G T +++ + + L R + +
Sbjct: 128 NLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAF- 186
Query: 168 CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAI 227
+LGN LG +A H + + + +
Sbjct: 187 ---GNLGNTHYLLGNFRDAVIAHEQRLL---IAKE------------------------F 216
Query: 228 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAA 281
AYSNLGN Y G+ + A E Y+ + L + +L
Sbjct: 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 276
Query: 282 GDMEQAVQAYVTALQ 296
D E+A+ ++ L
Sbjct: 277 QDYEKAIDYHLKHLA 291
Score = 101 bits (253), Expect = 3e-23
Identities = 46/260 (17%), Positives = 78/260 (30%), Gaps = 52/260 (20%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRL----KPDFIDGYINLAAALVAAGDMEQAVQ 131
+ G + G + + + AV++ Y L A D +A++
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 64
Query: 132 AYVTALQ------YNPDLYCVRSDLGNLLKALGRLDEAKDLY-----------------C 168
+ L +LGN LK LG DEA
Sbjct: 65 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124
Query: 169 VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKV--QNAIVCNYGGRKPTTLESAHFSTLA 226
+LGN+ A G+ P ++ Q A+ + L+
Sbjct: 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV-------------DLYEENLS 171
Query: 227 IKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAA 276
+ A+ NLGN + G ++A+ + + + K Y NL
Sbjct: 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 231
Query: 277 ALVAAGDMEQAVQAYVTALQ 296
A + G+ E A + Y L
Sbjct: 232 AYIFLGEFETASEYYKKTLL 251
Score = 86.5 bits (215), Expect = 2e-18
Identities = 56/323 (17%), Positives = 98/323 (30%), Gaps = 96/323 (29%)
Query: 22 GDYESAE---RHCMQLWRQETNNTGV---LLLLSSIHFQCRKLDK--SAHFSTLAIKQN- 72
DY A H + L R + G L + D+ L I +
Sbjct: 57 HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 116
Query: 73 ---PLLAEAYSNLGNVYKERGQ--------------------LQEALENYRHAVRL---- 105
A A NLGNVY +G+ LQ A++ Y + L
Sbjct: 117 NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL 176
Query: 106 --KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEA 163
+ + NL G+ AV A+ L + + G+ + E
Sbjct: 177 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL-------IAKEFGD------KAAER 223
Query: 164 KDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFS 223
+ S+LGN LG + A + +
Sbjct: 224 RAY----SNLGNAYIFLGEFETASEYYKK------------------------------- 248
Query: 224 TLAIKQN----PLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYIN 273
TL + + + A++ +LGN Y ++A++ + + + + +
Sbjct: 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 308
Query: 274 LAAALVAAGDMEQAVQAYVTALQ 296
L A A G+ +QA+ L+
Sbjct: 309 LGNAYTALGNHDQAMHFAEKHLE 331
Score = 78.4 bits (194), Expect = 9e-16
Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 15/128 (11%)
Query: 576 LAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINL 625
L I + AYSNLGN Y G+ + A E Y+ + L + +L
Sbjct: 210 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 269
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
D E+A+ ++ L + ++ R A +LG + A G A+H
Sbjct: 270 GNTYTLLQDYEKAIDYHLKHLAIA-----QELKDRIGEGRACWSLGNAYTALGNHDQAMH 324
Query: 686 HFEKAVSL 693
EK + +
Sbjct: 325 FAEKHLEI 332
Score = 76.9 bits (190), Expect = 4e-15
Identities = 25/136 (18%), Positives = 42/136 (30%), Gaps = 15/136 (11%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRL----KPDFIDGYINLAAALVAAGDMEQAVQ 640
+ G + G + + + AV++ Y L A D +A++
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 64
Query: 641 AYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD------ 694
+ L + I + A A NLG G AI ++ + +
Sbjct: 65 YHHHDLTLA-----RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK 119
Query: 695 PNFLDAYINLGNVLKE 710
A NLGNV
Sbjct: 120 VGEARALYNLGNVYHA 135
Score = 75.7 bits (187), Expect = 8e-15
Identities = 36/168 (21%), Positives = 49/168 (29%), Gaps = 27/168 (16%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALV 630
I A+A NLGN K G EA+ + + + K NL
Sbjct: 75 TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 134
Query: 631 AAGDMEQAVQAYVTALQYNP---------SCYLKA------IETRPDFAVAWSNLGCVFN 675
A G T Y + + R A+ NLG
Sbjct: 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHY 194
Query: 676 AQGEIWLAIHHFEKAVSLDPNFLD------AYINLGNVLKEARIFDRA 717
G A+ E+ + + F D AY NLGN F+ A
Sbjct: 195 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242
Score = 75.4 bits (186), Expect = 9e-15
Identities = 37/176 (21%), Positives = 62/176 (35%), Gaps = 39/176 (22%)
Query: 576 LAIKQN--PLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAA 627
+ + L+ YS LGN Y +ALE + H + L + NL
Sbjct: 32 VQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL----- 682
L G+ ++A+ L + + + + A A NLG V++A+G+ +
Sbjct: 92 TLKVLGNFDEAIVCCQRHLDIS-----RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQ 146
Query: 683 ---------------AIHHFEKAVSLD------PNFLDAYINLGNVLKEARIFDRA 717
A+ +E+ +SL A+ NLGN F A
Sbjct: 147 DTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202
Score = 66.5 bits (163), Expect = 8e-12
Identities = 34/189 (17%), Positives = 53/189 (28%), Gaps = 24/189 (12%)
Query: 3 DIAQLGIGLLELAHREYQAGDYESAERHCMQ---LWRQETNNTGVLLLLSSI---HFQCR 56
E ++A + L + ++ H+
Sbjct: 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 197
Query: 57 KLDK--SAHFSTLAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL----- 105
AH L I + AYSNLGN Y G+ + A E Y+ + L
Sbjct: 198 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257
Query: 106 -KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ------YNPDLYCVRSDLGNLLKALG 158
+ +L D E+A+ ++ L LGN ALG
Sbjct: 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 317
Query: 159 RLDEAKDLY 167
D+A
Sbjct: 318 NHDQAMHFA 326
Score = 43.0 bits (102), Expect = 3e-04
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 12/97 (12%)
Query: 22 GDYESAERHCMQ---LWRQETNNTGVLLLLSSI---HFQCRKLDK--SAHFSTLAIKQN- 72
G++E+A + + L RQ + S+ + + +K H LAI Q
Sbjct: 237 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296
Query: 73 ---PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 106
A +LGN Y G +A+ + +
Sbjct: 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333
Score = 39.9 bits (94), Expect = 0.003
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 576 LAIKQN----PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 615
LAI Q A +LGN Y G +A+ + +
Sbjct: 290 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 96.0 bits (240), Expect = 7e-24
Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 13/119 (10%)
Query: 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 640
E Y G + + G E+++ + A++L P+ ++ AL E+AV
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61
Query: 641 AYVTALQYNPSCYLKAIETRPDF--AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697
CY I D W+ + E L+ +
Sbjct: 62 -----------CYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
Score = 86.7 bits (216), Expect = 2e-20
Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 2/98 (2%)
Query: 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 131
E Y G + + G E+++ + A++L P+ ++ AL E+AV
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61
Query: 132 AYVTALQYNPDLYCVR--SDLGNLLKALGRLDEAKDLY 167
Y + D Y + + L+ + + ++
Sbjct: 62 CYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIA 99
Score = 75.2 bits (186), Expect = 2e-16
Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG--YINLAAALVAAGD 125
AI+ +P ++ + G + +EA++ Y + + + D + + A AL
Sbjct: 32 AIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEG 91
Query: 126 MEQAVQAYVTALQYNPDLY 144
E + + +
Sbjct: 92 KEVEAEIAEARAKLEHHHH 110
Score = 73.3 bits (181), Expect = 7e-16
Identities = 16/79 (20%), Positives = 30/79 (37%)
Query: 230 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 289
E Y G + + G E+++ + A++L P+ ++ AL E+AV
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61
Query: 290 AYVTALQYNPLLKKEDGWN 308
Y + +D W
Sbjct: 62 CYNYVINVIEDEYNKDVWA 80
Score = 72.9 bits (180), Expect = 1e-15
Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG--YINLAAALVAAGD 634
AI+ +P ++ + G + +EA++ Y + + + D + + A AL
Sbjct: 32 AIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEG 91
Query: 635 MEQAVQAYVTALQYNPSCY 653
E + + +
Sbjct: 92 KEVEAEIAEARAKLEHHHH 110
Score = 72.9 bits (180), Expect = 1e-15
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG--YINLAAALVAAGD 283
AI+ +P ++ + G + +EA++ Y + + + D + + A AL
Sbjct: 32 AIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEG 91
Query: 284 MEQAVQAYVTALQYNP 299
E + +
Sbjct: 92 KEVEAEIAEARAKLEH 107
Score = 55.2 bits (134), Expect = 2e-09
Identities = 12/50 (24%), Positives = 18/50 (36%)
Query: 661 PDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKE 710
+ G + G +I FEKA+ LDP ++ G L
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN 52
Score = 54.4 bits (132), Expect = 3e-09
Identities = 2/43 (4%), Positives = 14/43 (32%)
Query: 67 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 109
+ + ++ + ++ + + + E +L+
Sbjct: 67 INVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
Score = 54.4 bits (132), Expect = 3e-09
Identities = 2/43 (4%), Positives = 14/43 (32%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 618
+ + ++ + ++ + + + E +L+
Sbjct: 67 INVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 102 bits (256), Expect = 3e-23
Identities = 54/319 (16%), Positives = 92/319 (28%), Gaps = 68/319 (21%)
Query: 11 LLELAHREYQAGDYESAERH---CMQLWRQETNNTGVLLL-LSSIHFQCRKLDK--SAHF 64
L R ++GD + +Q+ ++ + L + +F K H
Sbjct: 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 71
Query: 65 STLAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYI 114
L + + A+A NLGN K G EA+ + + + K
Sbjct: 72 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 131
Query: 115 NLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL-------GRLDEAKDLY 167
NL A G +++ + + L R + +
Sbjct: 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAF- 190
Query: 168 CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAI 227
+LGN LG +A H + L I
Sbjct: 191 ---GNLGNTHYLLGNFRDAVIAHEQ-------------------------------RLLI 216
Query: 228 KQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAA 277
+ AYSNLGN Y G+ + A E Y+ + L + +L
Sbjct: 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 276
Query: 278 LVAAGDMEQAVQAYVTALQ 296
D E+A+ ++ L
Sbjct: 277 YTLLQDYEKAIDYHLKHLA 295
Score = 96.6 bits (241), Expect = 3e-21
Identities = 47/260 (18%), Positives = 78/260 (30%), Gaps = 52/260 (20%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRL----KPDFIDGYINLAAALVAAGDMEQAVQ 131
+ G + G + + + AV++ Y L A D +A++
Sbjct: 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 68
Query: 132 AYVTALQ------YNPDLYCVRSDLGNLLKALGRLDEAKDLY-----------------C 168
+ L +LGN LK LG DEA
Sbjct: 69 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128
Query: 169 VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKV--QNAIVCNYGGRKPTTLESAHFSTLA 226
+LGN+ A G+ P ++ Q A+ E L+
Sbjct: 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF---------YEEN----LS 175
Query: 227 IKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAA 276
+ A+ NLGN + G ++A+ + + + K Y NL
Sbjct: 176 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 235
Query: 277 ALVAAGDMEQAVQAYVTALQ 296
A + G+ E A + Y L
Sbjct: 236 AYIFLGEFETASEYYKKTLL 255
Score = 88.5 bits (220), Expect = 9e-19
Identities = 43/257 (16%), Positives = 72/257 (28%), Gaps = 75/257 (29%)
Query: 67 LAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINL 116
L++ A+ NLGN + G ++A+ + + + K Y NL
Sbjct: 174 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 233
Query: 117 AAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNL 176
A + G+ E A + Y L L R EA+ Y LGN
Sbjct: 234 GNAYIFLGEFETASEYYKKTLLLARQLK-------------DRAVEAQSCY----SLGNT 276
Query: 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ----NPL 232
L ++A + H + LAI Q
Sbjct: 277 YTLLQDYEKAIDYHLK-------------------------------HLAIAQELNDRIG 305
Query: 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLK-------------PDFIDGYINLAAALV 279
A +LGN Y G +A+ + + + D + L +
Sbjct: 306 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365
Query: 280 AAGDMEQAVQAYVTALQ 296
+ ++L
Sbjct: 366 TNNSIMSENTEIDSSLN 382
Score = 80.4 bits (199), Expect = 4e-16
Identities = 36/170 (21%), Positives = 55/170 (32%), Gaps = 28/170 (16%)
Query: 576 LAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINL 625
L I + AYSNLGN Y G+ + A E Y+ + L + +L
Sbjct: 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 273
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
D E+A+ ++ L + + R A +LG + A G A+H
Sbjct: 274 GNTYTLLQDYEKAIDYHLKHLAIA-----QELNDRIGEGRACWSLGNAYTALGNHDQAMH 328
Query: 686 HFEKAVSLD-------------PNFLDAYINLGNVLKEARIFDRANTLFY 722
EK + + N D + LG NT
Sbjct: 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEID 378
Score = 77.3 bits (191), Expect = 4e-15
Identities = 38/176 (21%), Positives = 63/176 (35%), Gaps = 39/176 (22%)
Query: 576 LAIKQN--PLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAA 627
+ + L+ YS LGN Y +ALE + H + L + NL
Sbjct: 36 VQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 95
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL----- 682
L G+ ++A+ L + + + + A A NLG V++A+G+ +
Sbjct: 96 TLKVLGNFDEAIVCCQRHLDIS-----RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQ 150
Query: 683 ---------------AIHHFEKAVSLDPNFLD------AYINLGNVLKEARIFDRA 717
A+ +E+ +SL D A+ NLGN F A
Sbjct: 151 DVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 206
Score = 74.6 bits (184), Expect = 3e-14
Identities = 43/277 (15%), Positives = 81/277 (29%), Gaps = 55/277 (19%)
Query: 3 DIAQLGIGLLELAHREYQAGDYESAERHCMQ---LWRQETNNTGVLLLLSSI---HFQCR 56
E ++A + L + ++ H+
Sbjct: 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 201
Query: 57 KLDK--SAHFSTLAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL----- 105
AH L I + AYSNLGN Y G+ + A E Y+ + L
Sbjct: 202 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261
Query: 106 -KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK 164
+ +L D E+A+ ++ L + +L + R+ E +
Sbjct: 262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA-------IAQELND------RIGEGR 308
Query: 165 DLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFST 224
+ LGN ALG D+A + +++ ++ + G +A
Sbjct: 309 ACWS----LGNAYTALGNHDQAMHFAEKHL-----EISREVGDKSG------ELTAR--- 350
Query: 225 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAV 261
L++ LG Y + ++
Sbjct: 351 ------LNLSDLQMVLGLSYSTNNSIMSENTEIDSSL 381
Score = 74.6 bits (184), Expect = 4e-14
Identities = 35/168 (20%), Positives = 48/168 (28%), Gaps = 27/168 (16%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALV 630
I A+A NLGN K G EA+ + + + K NL
Sbjct: 79 TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 138
Query: 631 AAGDMEQAVQAYVTALQYNP---------SCYLKA------IETRPDFAVAWSNLGCVFN 675
A G Y + + R A+ NLG
Sbjct: 139 AKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHY 198
Query: 676 AQGEIWLAIHHFEKAVSLDPNFLD------AYINLGNVLKEARIFDRA 717
G A+ E+ + + F D AY NLGN F+ A
Sbjct: 199 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246
Score = 72.7 bits (179), Expect = 1e-13
Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 15/133 (11%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRL----KPDFIDGYINLAAALVAAGDMEQAVQ 640
+ G + G + + + AV++ Y L A D +A++
Sbjct: 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 68
Query: 641 AYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL------D 694
+ L + I + A A NLG G AI ++ + +
Sbjct: 69 YHHHDLTLA-----RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK 123
Query: 695 PNFLDAYINLGNV 707
A NLGNV
Sbjct: 124 VGEARALYNLGNV 136
Score = 65.0 bits (159), Expect = 4e-11
Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 8/123 (6%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALV 630
+K + A++ +LGN Y ++A++ + + + + +L A
Sbjct: 259 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT 318
Query: 631 AAGDMEQAVQAYVTALQYNPSCYLKAIE--TRPDFAVAWSNLGCVFNAQGEIWLAIHHFE 688
A G+ +QA+ L+ + K+ E R + + LG ++ I +
Sbjct: 319 ALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEID 378
Query: 689 KAV 691
++
Sbjct: 379 SSL 381
Score = 56.5 bits (137), Expect = 2e-08
Identities = 30/205 (14%), Positives = 45/205 (21%), Gaps = 54/205 (26%)
Query: 106 KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ-YNPDLYCVRSDLGNLLKALGRLDEAK 164
L +GD V + A+Q DL + +
Sbjct: 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQ------------ 52
Query: 165 DLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFST 224
LGN L +A H ++ +
Sbjct: 53 --------LGNAYFYLHDYAKALEYHHHDLT---LART---------------------- 79
Query: 225 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAAL 278
I A+A NLGN K G EA+ + + + K NL
Sbjct: 80 --IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVY 137
Query: 279 VAAGDMEQAVQAYVTALQYNPLLKK 303
A G +
Sbjct: 138 HAKGKSFGCPGPQDVGEFPEEVRDA 162
Score = 51.9 bits (125), Expect = 6e-07
Identities = 28/168 (16%), Positives = 52/168 (30%), Gaps = 27/168 (16%)
Query: 22 GDYESAERHCMQ---LWRQETNNTGV---LLLLSSIHFQCRKLDK--SAHFSTLAIKQ-- 71
G++E+A + + L RQ + L + + + +K H LAI Q
Sbjct: 241 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300
Query: 72 --NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-------------PDFIDGYINL 116
A +LGN Y G +A+ + + + D + L
Sbjct: 301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVL 360
Query: 117 AAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK 164
+ + ++L R + N+ L +L K
Sbjct: 361 GLSYSTNNSIMSENTEIDSSLNGVRPKLGRRHSMENM--ELMKLTPEK 406
Score = 51.1 bits (123), Expect = 1e-06
Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 13/109 (11%)
Query: 615 KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVF 674
L +GD V + A+Q E + +S LG +
Sbjct: 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQV-------GTEDLKTLSAIYSQLGNAY 57
Query: 675 NAQGEIWLAIHHFEKAVSLDPNFLD------AYINLGNVLKEARIFDRA 717
+ A+ + ++L D A NLGN LK FD A
Sbjct: 58 FYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA 106
Score = 45.0 bits (107), Expect = 8e-05
Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 17/89 (19%)
Query: 576 LAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-------------PDF 618
LAI Q A +LGN Y G +A+ + + +
Sbjct: 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNL 353
Query: 619 IDGYINLAAALVAAGDMEQAVQAYVTALQ 647
D + L + + ++L
Sbjct: 354 SDLQMVLGLSYSTNNSIMSENTEIDSSLN 382
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 96.3 bits (240), Expect = 9e-23
Identities = 34/238 (14%), Positives = 77/238 (32%), Gaps = 44/238 (18%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
A + N G + ++ + AL+ + ++ N+ +M +A +A+
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTR 62
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIK 195
++ + L G L + D A + +L +AL +L
Sbjct: 63 SINRDKHLAVAYFQRGMLYYQTEKYDLA---------IKDLKEALIQLRG---------- 103
Query: 196 PVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALE 255
N + L ++ E N+ +Y ++ + ++A E
Sbjct: 104 ------------NQ---------LIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE 142
Query: 256 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFV 313
A +K + I+ A V + + V V L + P ++ + ++
Sbjct: 143 QLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRL-FRPNERQVAQLAKKDYL 199
Score = 94.8 bits (236), Expect = 4e-22
Identities = 16/130 (12%), Positives = 37/130 (28%), Gaps = 5/130 (3%)
Query: 579 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 638
+ N+G +Y + EA + + ++ Y + A
Sbjct: 31 AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 90
Query: 639 VQAYVTALQYNPSCYLKA-----IETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693
++ AL L ++ + N+ ++ + E A A S+
Sbjct: 91 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150
Query: 694 DPNFLDAYIN 703
+ I+
Sbjct: 151 KSEPRHSKID 160
Score = 91.3 bits (227), Expect = 6e-21
Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 18/142 (12%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
A + N G + ++ + AL+ + ++ N+ +M +A +
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEK---- 58
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS-LDPNFLDAYIN 703
+ ++I AVA+ G ++ + LAI ++A+ L N L Y
Sbjct: 59 -------AFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI 111
Query: 704 LGNVLKEAR---IFDRANTLFY 722
LG K +++ A
Sbjct: 112 LGLQFKLFACEVLYNIAFMYAK 133
Score = 77.8 bits (192), Expect = 3e-16
Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 8/128 (6%)
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
+ N+G +Y + EA + + ++ Y + A
Sbjct: 31 AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 90
Query: 130 VQAYVTALQY-NPDLYCVRSDLGNLLKALGRLDEAKDLY---CVRSDLGNLLKALGRLDE 185
++ AL + LG K L + LY + + KA +L
Sbjct: 91 IKDLKEALIQLRGNQLIDYKILGLQFK----LFACEVLYNIAFMYAKKEEWKKAEEQLAL 146
Query: 186 AKNLHTEN 193
A ++ +E
Sbjct: 147 ATSMKSEP 154
Score = 52.4 bits (126), Expect = 1e-07
Identities = 14/85 (16%), Positives = 31/85 (36%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
L ++ E N+ +Y ++ + ++A E A +K + I+ A V +
Sbjct: 112 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKL 171
Query: 636 EQAVQAYVTALQYNPSCYLKAIETR 660
+ V V L + + +
Sbjct: 172 YEPVVIPVGRLFRPNERQVAQLAKK 196
Score = 50.1 bits (120), Expect = 7e-07
Identities = 12/65 (18%), Positives = 26/65 (40%)
Query: 67 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 126
L ++ E N+ +Y ++ + ++A E A +K + I+ A V +
Sbjct: 112 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKL 171
Query: 127 EQAVQ 131
+ V
Sbjct: 172 YEPVV 176
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 88.5 bits (220), Expect = 6e-21
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
Query: 579 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 638
A A +LGN ++ ++A +Y A+ L P I Y N AA +
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC 61
Query: 639 VQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
VQ A++ + A A S G F Q ++ LA+ F +++S +
Sbjct: 62 VQFCEKAVEVGR----ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
Score = 76.9 bits (190), Expect = 6e-17
Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 7/105 (6%)
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
A A +LGN ++ ++A +Y A+ L P I Y N AA +
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC 61
Query: 130 VQAYVTALQYNPDLYCVRSD-------LGNLLKALGRLDEAKDLY 167
VQ A++ + GN + L A +
Sbjct: 62 VQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWF 106
Score = 67.7 bits (166), Expect = 1e-13
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 7/98 (7%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD--- 108
++ + +K+ AI+ +P Y+N VY E + E ++ AV + +
Sbjct: 18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA 77
Query: 109 ----FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD 142
A D+ AVQ + +L D
Sbjct: 78 DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
Score = 66.2 bits (162), Expect = 3e-13
Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 15/117 (12%)
Query: 228 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 287
A A +LGN ++ ++A +Y A+ L P I Y N AA +
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC 61
Query: 288 VQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVMMKRPVLGLASAIE 343
VQ A++ E KA+ R G A L+ A++
Sbjct: 62 VQFCEKAVEVGR----------ETRADYKLIAKAMSRAGNAFQKQND----LSLAVQ 104
Score = 66.2 bits (162), Expect = 4e-13
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 7/97 (7%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD---- 617
++ + +K+ AI+ +P Y+N VY E + E ++ AV + +
Sbjct: 19 YKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD 78
Query: 618 ---FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS 651
A D+ AVQ + +L
Sbjct: 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
Score = 64.2 bits (157), Expect = 2e-12
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 7/83 (8%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD-------FIDGYINLAA 276
AI+ +P Y+N VY E + E ++ AV + +
Sbjct: 32 DKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91
Query: 277 ALVAAGDMEQAVQAYVTALQYNP 299
A D+ AVQ + +L
Sbjct: 92 AFQKQNDLSLAVQWFHRSLSEFR 114
Score = 46.5 bits (111), Expect = 3e-06
Identities = 23/163 (14%), Positives = 44/163 (26%), Gaps = 55/163 (33%)
Query: 107 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD---LYCVRSDLGNLLKALGRLDEA 163
D +L A D E+A Y A++ +P Y + + + E
Sbjct: 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNK---AAVYFEEKKFAEC 61
Query: 164 KDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFS 223
KA+ + T
Sbjct: 62 VQFC---------EKAV------------EVGRET------------------------- 75
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 266
L+A+A S GN ++++ L A++ + ++ D
Sbjct: 76 ---RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
Score = 44.6 bits (106), Expect = 1e-05
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 658 ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
D A+A +LG Q + A H++KA+ LDP+ + Y N V E + F
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC 61
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 88.2 bits (219), Expect = 6e-21
Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 2/99 (2%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
+ Q LG Y E Q AL + R A+ P + + L L GD
Sbjct: 11 MLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRA 70
Query: 128 QAVQAYVTALQYNPDL--YCVRSDLGNLLKALGRLDEAK 164
A QA+ + L V +L L+ L R D +
Sbjct: 71 GARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALE 109
Score = 86.2 bits (214), Expect = 3e-20
Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 13/114 (11%)
Query: 601 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETR 660
+Q E + D + L + A+ A++
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPH-----------LRAALDFD 49
Query: 661 PDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD--AYINLGNVLKEAR 712
P ++VAW LG QG+ A +E ++ + D L L+
Sbjct: 50 PTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103
Score = 83.9 bits (208), Expect = 2e-19
Identities = 20/75 (26%), Positives = 27/75 (36%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
+ Q LG Y E Q AL + R A+ P + + L L GD
Sbjct: 11 MLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRA 70
Query: 637 QAVQAYVTALQYNPS 651
A QA+ + L S
Sbjct: 71 GARQAWESGLAAAQS 85
Score = 83.9 bits (208), Expect = 2e-19
Identities = 19/74 (25%), Positives = 26/74 (35%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
+ Q LG Y E Q AL + R A+ P + + L L GD
Sbjct: 11 MLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRA 70
Query: 286 QAVQAYVTALQYNP 299
A QA+ + L
Sbjct: 71 GARQAWESGLAAAQ 84
Score = 76.2 bits (188), Expect = 8e-17
Identities = 20/115 (17%), Positives = 35/115 (30%), Gaps = 13/115 (11%)
Query: 92 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLG 151
+Q E + D + L + A+ AL ++P LG
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
Query: 152 NLLKALGRLDEAKDLYC-------------VRSDLGNLLKALGRLDEAKNLHTEN 193
L+ G A+ + V +L L+ L R D ++ H +
Sbjct: 61 KTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHHHHH 115
Score = 69.7 bits (171), Expect = 1e-14
Identities = 13/66 (19%), Positives = 22/66 (33%)
Query: 652 CYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEA 711
+ D + LG + + A+ H A+ DP + A+ LG L+
Sbjct: 7 RLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ 66
Query: 712 RIFDRA 717
A
Sbjct: 67 GDRAGA 72
Score = 54.3 bits (131), Expect = 4e-09
Identities = 20/168 (11%), Positives = 35/168 (20%), Gaps = 58/168 (34%)
Query: 126 MEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDE 185
M+ + L D L +R LG + D
Sbjct: 1 MQAITERLEAMLAQGTDN------------ML-----------LRFTLGKTYAEHEQFDA 37
Query: 186 AKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYK 245
A H A+ +P + A+ LG +
Sbjct: 38 AL--------------------------------PHLRA-ALDFDPTYSVAWKWLGKTLQ 64
Query: 246 ERGQLQEALENYRHAVRLKPDFIDG--YINLAAALVAAGDMEQAVQAY 291
+G A + + + D L L + +
Sbjct: 65 GQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHH 112
Score = 53.9 bits (130), Expect = 5e-09
Identities = 8/50 (16%), Positives = 15/50 (30%)
Query: 250 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+Q E + D + L + A+ AL ++P
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP 50
Score = 51.6 bits (124), Expect = 3e-08
Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 2/103 (1%)
Query: 33 QLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 92
+ Q T+N + L + + + D + A+ +P + A+ LG + +G
Sbjct: 10 AMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR 69
Query: 93 QEALENYRHAVRLKPDFIDG--YINLAAALVAAGDMEQAVQAY 133
A + + + D L L + +
Sbjct: 70 AGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHH 112
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 86.3 bits (214), Expect = 6e-20
Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 11/120 (9%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
+ E LG + G+ +A + ++ L ++ L A + G E
Sbjct: 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYE 69
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
QA+Q Y + + G++ A F A +L
Sbjct: 70 QALQ-----------SYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118
Score = 82.1 bits (203), Expect = 1e-18
Identities = 19/100 (19%), Positives = 35/100 (35%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
+ E LG + G+ +A + ++ L ++ L A + G E
Sbjct: 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYE 69
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
QA+Q+Y + + LG LD A+ +
Sbjct: 70 QALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGF 109
Score = 79.8 bits (197), Expect = 1e-17
Identities = 19/115 (16%), Positives = 43/115 (37%), Gaps = 3/115 (2%)
Query: 51 IHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 110
+Q K D + + A + LG + G ++AL++Y + + +
Sbjct: 27 NQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP 86
Query: 111 DGYINLAAALVAAGDMEQAVQAYVTALQY---NPDLYCVRSDLGNLLKALGRLDE 162
+ A + GD++ A + +A P + + G +L+A+ +
Sbjct: 87 RFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARKD 141
Score = 78.6 bits (194), Expect = 2e-17
Identities = 20/148 (13%), Positives = 41/148 (27%), Gaps = 11/148 (7%)
Query: 607 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVA 666
L D ++ L AG + A + + + A
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-----------YDARY 54
Query: 667 WSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSY 726
+ LG + G A+ + +D N + + D A + FY +
Sbjct: 55 FLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARA 114
Query: 727 FMITDEDIDVILERCEAKTEELNKKFEQ 754
+ + R A E + + ++
Sbjct: 115 LAAAQPAHEALAARAGAMLEAVTARKDR 142
Score = 74.4 bits (183), Expect = 7e-16
Identities = 16/110 (14%), Positives = 38/110 (34%), Gaps = 8/110 (7%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
++ K D + + A + LG + G ++AL++Y + + +
Sbjct: 29 YQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRF 88
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLG 671
+ A + GD++ A + +A + +P + G
Sbjct: 89 PFHAAECHLQLGDLDGAESGFYSARALAAA--------QPAHEALAARAG 130
Score = 69.8 bits (171), Expect = 3e-14
Identities = 12/82 (14%), Positives = 30/82 (36%)
Query: 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277
++ + A + LG + G ++AL++Y + + + + A
Sbjct: 36 DAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95
Query: 278 LVAAGDMEQAVQAYVTALQYNP 299
+ GD++ A + +A
Sbjct: 96 HLQLGDLDGAESGFYSARALAA 117
Score = 65.1 bits (159), Expect = 1e-12
Identities = 14/74 (18%), Positives = 27/74 (36%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
+ E LG + G+ +A + ++ L ++ L A + G E
Sbjct: 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYE 69
Query: 286 QAVQAYVTALQYNP 299
QA+Q+Y +
Sbjct: 70 QALQSYSYGALMDI 83
Score = 59.8 bits (145), Expect = 9e-11
Identities = 15/98 (15%), Positives = 32/98 (32%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
L L +YQAG ++ A++ L + + L L + +++ +
Sbjct: 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 108
+ + + + G L A + A L
Sbjct: 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118
Score = 59.0 bits (143), Expect = 2e-10
Identities = 18/100 (18%), Positives = 28/100 (28%), Gaps = 11/100 (11%)
Query: 98 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL 157
L D ++ L AG + A + + + LG ++L
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL 65
Query: 158 GRLDEAKDLY--CVRSD---------LGNLLKALGRLDEA 186
G ++A Y D LG LD A
Sbjct: 66 GLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGA 105
Score = 38.6 bits (90), Expect = 0.002
Identities = 6/44 (13%), Positives = 12/44 (27%)
Query: 256 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
L D ++ L AG + A + + +
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH 49
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 85.3 bits (212), Expect = 7e-20
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 14/139 (10%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
L +++ AE GN + + A+ Y A+ L P + N AAA G+
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP 695
AVQ +AI P ++ A+ +G ++ + A+ +++KA+ LDP
Sbjct: 63 AGAVQ-----------DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP 111
Query: 696 NFLDAYINLGNV---LKEA 711
+ NL L+EA
Sbjct: 112 DNETYKSNLKIAELKLREA 130
Score = 77.3 bits (191), Expect = 5e-17
Identities = 26/107 (24%), Positives = 45/107 (42%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111
+ + + HF AI+ NP A + N Y + G A+++ A+ + P +
Sbjct: 22 QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK 81
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALG 158
Y + AL + +AV Y AL+ +PD +S+L L
Sbjct: 82 AYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128
Score = 72.6 bits (179), Expect = 2e-15
Identities = 20/77 (25%), Positives = 34/77 (44%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
AI+ NP A + N Y + G A+++ A+ + P + Y + AL +
Sbjct: 36 GKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNK 95
Query: 635 MEQAVQAYVTALQYNPS 651
+AV Y AL+ +P
Sbjct: 96 HVEAVAYYKKALELDPD 112
Score = 72.2 bits (178), Expect = 3e-15
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
AI+ NP A + N Y + G A+++ A+ + P + Y + AL +
Sbjct: 36 GKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNK 95
Query: 284 MEQAVQAYVTALQYNP 299
+AV Y AL+ +P
Sbjct: 96 HVEAVAYYKKALELDP 111
Score = 64.9 bits (159), Expect = 1e-12
Identities = 26/101 (25%), Positives = 40/101 (39%)
Query: 67 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 126
L +++ AE GN + + A+ Y A+ L P + N AAA G+
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
AVQ A+ +P +G L +L + EA Y
Sbjct: 63 AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYY 103
Score = 60.3 bits (147), Expect = 5e-11
Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 11/104 (10%)
Query: 614 LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCV 673
+ + + E AV Y KAIE P AV + N
Sbjct: 7 EDSAEAERLKTEGNEQMKVENFEAAVH-----------FYGKAIELNPANAVYFCNRAAA 55
Query: 674 FNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
++ G A+ E+A+ +DP + AY +G L A
Sbjct: 56 YSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEA 99
Score = 55.3 bits (134), Expect = 3e-09
Identities = 20/75 (26%), Positives = 31/75 (41%)
Query: 225 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 284
L +++ AE GN + + A+ Y A+ L P + N AAA G+
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 285 EQAVQAYVTALQYNP 299
AVQ A+ +P
Sbjct: 63 AGAVQDCERAICIDP 77
Score = 48.0 bits (115), Expect = 8e-07
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 13/113 (11%)
Query: 172 DLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIV-CNYG------GRKPTTLESAHFST 224
GN + + A + + + I+ + NA+ CN G ++
Sbjct: 17 TEGNEQMKVENFEAAVHFYGKAIE---LNPANAVYFCNRAAAYSKLGNYAGAVQDC---E 70
Query: 225 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277
AI +P ++AY +G + EA+ Y+ A+ L PD NL A
Sbjct: 71 RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123
Score = 47.2 bits (113), Expect = 1e-06
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 628
AI +P ++AY +G + EA+ Y+ A+ L PD NL A
Sbjct: 70 ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123
Score = 33.0 bits (76), Expect = 0.13
Identities = 11/63 (17%), Positives = 18/63 (28%)
Query: 655 KAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIF 714
E A G A+H + KA+ L+P + N + +
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 715 DRA 717
A
Sbjct: 63 AGA 65
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 85.2 bits (211), Expect = 8e-20
Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 12/119 (10%)
Query: 580 QNPLL-AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 638
NP + E G + L EA + + +P+ + + +L A
Sbjct: 11 NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLA 70
Query: 639 VQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697
+ A A + P + L + A+ + P +
Sbjct: 71 IIALNHARMLD-----------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118
Score = 80.6 bits (199), Expect = 3e-18
Identities = 19/92 (20%), Positives = 33/92 (35%)
Query: 51 IHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 110
+ L ++A ++ P EA+ +LG E + A+ HA L P I
Sbjct: 26 SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI 85
Query: 111 DGYINLAAALVAAGDMEQAVQAYVTALQYNPD 142
+ LA + + A+ + L P
Sbjct: 86 AVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117
Score = 79.0 bits (195), Expect = 9e-18
Identities = 19/89 (21%), Positives = 33/89 (37%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
+ L ++A ++ P EA+ +LG E + A+ HA L P I
Sbjct: 28 LKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV 87
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNP 650
+ LA + + A+ + L P
Sbjct: 88 HAALAVSHTNEHNANAALASLRAWLLSQP 116
Score = 77.9 bits (192), Expect = 3e-17
Identities = 17/74 (22%), Positives = 28/74 (37%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
++ P EA+ +LG E + A+ HA L P I + LA + +
Sbjct: 43 VCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 102
Query: 286 QAVQAYVTALQYNP 299
A+ + L P
Sbjct: 103 AALASLRAWLLSQP 116
Score = 74.4 bits (183), Expect = 4e-16
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 1/98 (1%)
Query: 71 QNPLL-AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
NP + E G + L EA + + +P+ + + +L A
Sbjct: 11 NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLA 70
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
+ A A +P V + L + A
Sbjct: 71 IIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASL 108
Score = 69.0 bits (169), Expect = 3e-14
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 11/94 (11%)
Query: 624 NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLA 683
+++ ++ +A A+ Q P + AW +LG + LA
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEP-----------EREEAWRSLGLTQAENEKDGLA 70
Query: 684 IHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
I A LDP + + L + A
Sbjct: 71 IIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 104
Score = 62.1 bits (151), Expect = 1e-11
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Query: 229 QNPLL-AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 287
NP + E G + L EA + + +P+ + + +L A
Sbjct: 11 NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLA 70
Query: 288 VQAYVTALQYNP 299
+ A A +P
Sbjct: 71 IIALNHARMLDP 82
Score = 56.3 bits (136), Expect = 8e-10
Identities = 12/99 (12%), Positives = 28/99 (28%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
+E + + A + ++E L + K + A
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 109
+P ++ L + AL + R + +P +
Sbjct: 80 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118
Score = 52.5 bits (126), Expect = 2e-08
Identities = 10/52 (19%), Positives = 15/52 (28%)
Query: 666 AWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
G + A FE +P +A+ +LG E A
Sbjct: 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLA 70
Score = 50.1 bits (120), Expect = 1e-07
Identities = 16/153 (10%), Positives = 33/153 (21%), Gaps = 56/153 (36%)
Query: 115 NLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLG 174
+++ ++ +A A+ Q P+ EA LG
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPERE-----------------EA------WRSLG 58
Query: 175 NLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLA 234
+ A A +P
Sbjct: 59 LTQAENEKDGLAIIALNH---------------------------------ARMLDPKDI 85
Query: 235 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 267
++ L + AL + R + +P +
Sbjct: 86 AVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118
Score = 45.9 bits (109), Expect = 4e-06
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 618
A +P ++ L + AL + R + +P +
Sbjct: 77 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 82.7 bits (205), Expect = 3e-19
Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 2/95 (2%)
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
++P L + + AL + V PD++ Y +L + A+
Sbjct: 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61
Query: 131 QAYVTALQYNPDLYCVRS--DLGNLLKALGRLDEA 163
Y ++ + + +L + L+
Sbjct: 62 DTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHH 96
Score = 82.7 bits (205), Expect = 3e-19
Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 13/110 (11%)
Query: 580 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 639
++P L + + AL + V PD++ Y +L + A+
Sbjct: 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61
Query: 640 QAYVTALQYNPSCYLKAIETRPDF--AVAWSNLGCVFNAQGEIWLAIHHF 687
Y + IE + S L + HH
Sbjct: 62 D-----------TYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH 100
Score = 77.7 bits (192), Expect = 1e-17
Identities = 11/71 (15%), Positives = 23/71 (32%)
Query: 229 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 288
++P L + + AL + V PD++ Y +L + A+
Sbjct: 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61
Query: 289 QAYVTALQYNP 299
Y ++
Sbjct: 62 DTYAQGIEVAR 72
Score = 73.1 bits (180), Expect = 6e-16
Identities = 14/105 (13%), Positives = 35/105 (33%), Gaps = 13/105 (12%)
Query: 616 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFN 675
P+ LA + + +A+ + + +ET PD+ + +LG ++
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALA-----------LFEELVETDPDYVGTYYHLGKLYE 52
Query: 676 AQGEIWLAIHHFEKAVSLDPNFLDAYI--NLGNVLKEARIFDRAN 718
AI + + + + L + +A + +
Sbjct: 53 RLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHH 97
Score = 62.3 bits (152), Expect = 4e-12
Identities = 13/99 (13%), Positives = 36/99 (36%), Gaps = 2/99 (2%)
Query: 37 QETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAL 96
++ + L+ H + ++ ++ +P Y +LG +Y+ + +A+
Sbjct: 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61
Query: 97 ENYRHAVRLKPDFIDGYI--NLAAALVAAGDMEQAVQAY 133
+ Y + + + L A + A +E +
Sbjct: 62 DTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH 100
Score = 62.3 bits (152), Expect = 4e-12
Identities = 15/121 (12%), Positives = 31/121 (25%), Gaps = 35/121 (28%)
Query: 173 LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL 232
L A A F ++ +P
Sbjct: 13 LAQEHLKHDNASRAL--------------------------------ALFEE-LVETDPD 39
Query: 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI--NLAAALVAAGDMEQAVQA 290
Y +LG +Y+ + +A++ Y + + + L A + A +E
Sbjct: 40 YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHH 99
Query: 291 Y 291
+
Sbjct: 100 H 100
Score = 61.9 bits (151), Expect = 6e-12
Identities = 11/79 (13%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI-- 623
++ ++ +P Y +LG +Y+ + +A++ Y + + +
Sbjct: 22 NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81
Query: 624 NLAAALVAAGDMEQAVQAY 642
L A + A +E +
Sbjct: 82 ELQDAKLKAEGLEHHHHHH 100
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 85.4 bits (212), Expect = 4e-19
Identities = 27/221 (12%), Positives = 64/221 (28%), Gaps = 57/221 (25%)
Query: 53 FQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------K 106
F+ + + + + A LG VY + EA +++ +
Sbjct: 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH 62
Query: 107 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDL 166
+ AG+ + A + ++ + + + L L + +
Sbjct: 63 TAEHRALHQVGMVERMAGNWDAARRCFLEERE-------LLASLPED-----PLAASANA 110
Query: 167 YCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLA 226
Y + + G L A+ + + +L
Sbjct: 111 YE----VATVALHFGDLAGARQEYEK-------------------------------SLV 135
Query: 227 IKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL 263
Q +A A+ LG++ ++ L EA +++ A +
Sbjct: 136 YAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176
Score = 78.9 bits (195), Expect = 8e-17
Identities = 23/172 (13%), Positives = 53/172 (30%), Gaps = 16/172 (9%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------K 615
FE + + + + A LG VY + EA +++ +
Sbjct: 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH 62
Query: 616 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFN 675
+ AG+ + A + ++ + E + + V
Sbjct: 63 TAEHRALHQVGMVERMAGNWDAARRCFLEEREL----LASLPEDPLAASANAYEVATVAL 118
Query: 676 AQGEIWLAIHHFEKAVSLDPNFLD------AYINLGNVLKEARIFDRANTLF 721
G++ A +EK++ D A+ LG++ ++ + A +
Sbjct: 119 HFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHW 170
Score = 75.4 bits (186), Expect = 1e-15
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID-------GYINLAAALVAAGDMEQ 637
A +G V + G A + L + +A + GD+
Sbjct: 66 HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAG 125
Query: 638 AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL---- 693
A Q Y +L Y + + + A A+ LG + + + A H+ +A +
Sbjct: 126 ARQEYEKSLVYA-----QQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL 180
Query: 694 --DPNFLDAYINLGNV 707
+ L +
Sbjct: 181 EDSEAVNELMTRLNGL 196
Score = 66.5 bits (163), Expect = 1e-12
Identities = 34/248 (13%), Positives = 64/248 (25%), Gaps = 65/248 (26%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDK--SAHFSTLAIKQ----N 72
++A DY AER L +G +L ++ + D+ ++ + Q +
Sbjct: 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH 62
Query: 73 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID-------GYINLAAALVAAGD 125
A +G V + G A + L + +A + GD
Sbjct: 63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD 122
Query: 126 MEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDE 185
+ A Q Y +L + ++ A LG+L + L E
Sbjct: 123 LAGARQEYEKSLV-------YAQQADD------QVAIACAF----RGLGDLAQQEKNLLE 165
Query: 186 AKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ----NPLLAEAYSNLG 241
A+ I + + E + L
Sbjct: 166 AQQHWLR-------------------------------ARDIFAELEDSEAVNELMTRLN 194
Query: 242 NVYKERGQ 249
+
Sbjct: 195 GLEHHHHH 202
Score = 60.4 bits (147), Expect = 2e-10
Identities = 11/101 (10%), Positives = 27/101 (26%), Gaps = 11/101 (10%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQA 638
+ + V G L A + Y ++ + + L ++ +A
Sbjct: 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA 166
Query: 639 VQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE 679
Q ++ A +E + L + +
Sbjct: 167 QQHWLRARDI-----FAELEDSEAVNELMTRLNGLEHHHHH 202
Score = 56.1 bits (136), Expect = 5e-09
Identities = 24/176 (13%), Positives = 41/176 (23%), Gaps = 52/176 (29%)
Query: 132 AYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHT 191
A A Y ++ L + + + LG + + R DEA+
Sbjct: 1 AAFEAHDYALAERQAQALLAH------PATASGARF----MLGYVYAFMDRFDEARASFQ 50
Query: 192 ENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ----NPLLAEAYSNLGNVYKER 247
Q + A +G V +
Sbjct: 51 A-------------------------------LQQQAQKSGDHTAEHRALHQVGMVERMA 79
Query: 248 GQLQEALENYRHAVRLKPDFID-------GYINLAAALVAAGDMEQAVQAYVTALQ 296
G A + L + +A + GD+ A Q Y +L
Sbjct: 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135
Score = 33.4 bits (77), Expect = 0.19
Identities = 13/102 (12%), Positives = 27/102 (26%), Gaps = 12/102 (11%)
Query: 2 NDIAQLGIGLLELAHREYQAGDYESAERHCMQ---LWRQETNNTGV---LLLLSSIHFQC 55
D E+A GD A + + +Q + + L + Q
Sbjct: 101 EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160
Query: 56 RKLDKSAHFST--LAIKQ----NPLLAEAYSNLGNVYKERGQ 91
+ L ++ I + + E + L +
Sbjct: 161 KNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 80.3 bits (198), Expect = 8e-18
Identities = 24/159 (15%), Positives = 46/159 (28%), Gaps = 11/159 (6%)
Query: 599 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIE 658
G L + D ++ +LA +G E A +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHX-----------VFQALCV 49
Query: 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRAN 718
+ + LG A G+ LAIH + +D + L + A
Sbjct: 50 LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAE 109
Query: 719 TLFYVSSYFMITDEDIDVILERCEAKTEELNKKFEQLGE 757
+ +++ + + + R + E + K E E
Sbjct: 110 SGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKEMKHE 148
Score = 72.6 bits (178), Expect = 4e-15
Identities = 18/133 (13%), Positives = 34/133 (25%), Gaps = 11/133 (8%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
+ + E +L + G ++A ++ L ++ L A A G +
Sbjct: 13 LNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYD 72
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
A+ + Y + GE+ A A L N
Sbjct: 73 LAIHS-----------YSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
Query: 697 FLDAYINLGNVLK 709
+ V
Sbjct: 122 XPEFXELSTRVSS 134
Score = 71.9 bits (176), Expect = 6e-15
Identities = 19/145 (13%), Positives = 44/145 (30%)
Query: 22 GDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSN 81
G S L ++ L L+ +Q + + + + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 82 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 141
LG + GQ A+ +Y + + + A L+ G++ +A A +
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
Query: 142 DLYCVRSDLGNLLKALGRLDEAKDL 166
+ + L + K++
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLKKEM 145
Score = 69.2 bits (169), Expect = 5e-14
Identities = 16/100 (16%), Positives = 31/100 (31%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
+ + E +L + G ++A ++ L ++ L A A G +
Sbjct: 13 LNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYD 72
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
A+ +Y + L G L EA+
Sbjct: 73 LAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGL 112
Score = 63.8 bits (155), Expect = 4e-12
Identities = 14/113 (12%), Positives = 37/113 (32%), Gaps = 12/113 (10%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
++ + + + + + LG + GQ A+ +Y + +
Sbjct: 32 YQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRF 91
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPS------------CYLKAIETRPD 662
+ A L+ G++ +A A + + L+AI+ + +
Sbjct: 92 PFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKE 144
Score = 61.5 bits (149), Expect = 3e-11
Identities = 11/82 (13%), Positives = 27/82 (32%)
Query: 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277
++ + + + LG + GQ A+ +Y + + + A
Sbjct: 39 DAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98
Query: 278 LVAAGDMEQAVQAYVTALQYNP 299
L+ G++ +A A +
Sbjct: 99 LLQXGELAEAESGLFLAQELIA 120
Score = 59.2 bits (143), Expect = 2e-10
Identities = 11/74 (14%), Positives = 25/74 (33%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
+ + E +L + G ++A ++ L ++ L A A G +
Sbjct: 13 LNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYD 72
Query: 286 QAVQAYVTALQYNP 299
A+ +Y +
Sbjct: 73 LAIHSYSYGAVMDI 86
Score = 53.8 bits (129), Expect = 1e-08
Identities = 20/110 (18%), Positives = 32/110 (29%), Gaps = 11/110 (10%)
Query: 90 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSD 149
G L + D ++ +LA +G E A + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 150 LGNLLKALGRLDEAKDLY-----------CVRSDLGNLLKALGRLDEAKN 188
LG +A+G+ D A Y L G L EA++
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAES 110
Score = 39.5 bits (92), Expect = 0.001
Identities = 8/52 (15%), Positives = 15/52 (28%)
Query: 248 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
G L + D ++ +LA +G E A + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH 52
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 79.1 bits (196), Expect = 3e-17
Identities = 39/195 (20%), Positives = 60/195 (30%), Gaps = 58/195 (29%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQA 129
A+ NLGN + G ++A+ + + + K Y NL A + G+ E A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNL 189
+ Y L + L + R EA+ Y LGN L ++A +
Sbjct: 69 SEYYKKTLL-------LARQLKD------RAVEAQSCYS----LGNTYTLLQDYEKAIDY 111
Query: 190 HTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQN----PLLAEAYSNLGNVYK 245
H + LAI Q A +LGN Y
Sbjct: 112 HLK-------------------------------HLAIAQELKDRIGEGRACWSLGNAYT 140
Query: 246 ERGQLQEALENYRHA 260
G +A+
Sbjct: 141 ALGNHDQAMHFAEKH 155
Score = 77.6 bits (192), Expect = 1e-16
Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 15/128 (11%)
Query: 576 LAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINL 625
L I + AYSNLGN Y G+ + A E Y+ + L + +L
Sbjct: 36 LLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 95
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
D E+A+ ++ L + ++ R A +LG + A G A+H
Sbjct: 96 GNTYTLLQDYEKAIDYHLKHLAIA-----QELKDRIGEGRACWSLGNAYTALGNHDQAMH 150
Query: 686 HFEKAVSL 693
EK + +
Sbjct: 151 FAEKHLEI 158
Score = 77.2 bits (191), Expect = 1e-16
Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQA 638
A+ NLGN + G ++A+ + + + K Y NL A + G+ E A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 639 VQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL 698
+ Y L + ++ R A + +LG + + AI + K +++
Sbjct: 69 SEYYKKTLLLA-----RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 123
Query: 699 D------AYINLGNVLKEARIFDRA 717
D A +LGN D+A
Sbjct: 124 DRIGEGRACWSLGNAYTALGNHDQA 148
Score = 54.8 bits (133), Expect = 6e-09
Identities = 20/138 (14%), Positives = 52/138 (37%), Gaps = 18/138 (13%)
Query: 19 YQAGDYESAERHCMQ---LWRQETNNTGV---LLLLSSIHFQCRKLDKSAHFS--TLAIK 70
Y G++ A Q + ++ + L + + + + ++ + TL +
Sbjct: 20 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA 79
Query: 71 Q----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAAL 120
+ + A++ +LGN Y ++A++ + + + + +L A
Sbjct: 80 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 139
Query: 121 VAAGDMEQAVQAYVTALQ 138
A G+ +QA+ L+
Sbjct: 140 TALGNHDQAMHFAEKHLE 157
Score = 50.2 bits (121), Expect = 3e-07
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQA 287
A+ NLGN + G ++A+ + + + K Y NL A + G+ E A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 288 VQAYVTALQ 296
+ Y L
Sbjct: 69 SEYYKKTLL 77
Score = 37.1 bits (87), Expect = 0.009
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 660 RPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD------AYINLGNVLKEARI 713
R A+ NLG G A+ E+ + + F D AY NLGN
Sbjct: 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE 64
Query: 714 FDRA 717
F+ A
Sbjct: 65 FETA 68
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 75.8 bits (187), Expect = 1e-16
Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 5/132 (3%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
A LGN ++ AL++Y A L P + N AA GD + +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
A++ + E A A++ +G + + + AIH + K+++ D
Sbjct: 64 AIEVGR----ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKC 118
Query: 705 GNVLKEARIFDR 716
K + +R
Sbjct: 119 QQAEKILKEQER 130
Score = 63.5 bits (155), Expect = 4e-12
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
A LGN ++ AL++Y A L P + N AA GD + +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 136 ALQYNPDLYCVRSD-------LGNLLKALGRLDEAKDLY 167
A++ + +GN + +A Y
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFY 102
Score = 61.2 bits (149), Expect = 2e-11
Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 7/98 (7%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD--- 108
++ + D + A + +P +N VY E+G + E A+ + +
Sbjct: 14 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE 73
Query: 109 ----FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD 142
Y + + + A+ Y +L +
Sbjct: 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
Score = 59.6 bits (145), Expect = 8e-11
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD---- 617
++ + D + A + +P +N VY E+G + E A+ + +
Sbjct: 15 YKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED 74
Query: 618 ---FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS 651
Y + + + A+ Y +L + +
Sbjct: 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
Score = 57.7 bits (140), Expect = 3e-10
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD-------FIDGYINLAA 276
A + +P +N VY E+G + E A+ + + Y +
Sbjct: 28 DKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87
Query: 277 ALVAAGDMEQAVQAYVTALQYNP 299
+ + A+ Y +L +
Sbjct: 88 SYFKEEKYKDAIHFYNKSLAEHR 110
Score = 53.1 bits (128), Expect = 2e-08
Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 10/94 (10%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
A LGN ++ AL++Y A L P + N AA GD + +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 294 ALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGA 327
A++ E + KA R G
Sbjct: 64 AIEVGR----------ENREDYRQIAKAYARIGN 87
Score = 38.1 bits (89), Expect = 0.002
Identities = 8/40 (20%), Positives = 20/40 (50%)
Query: 227 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 266
+ +A+AY+ +GN Y + + ++A+ Y ++
Sbjct: 72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
Score = 31.9 bits (73), Expect = 0.34
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A+ LG + + A+ H++KA LDP + N V E +++
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKC 57
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 76.0 bits (187), Expect = 2e-16
Identities = 16/120 (13%), Positives = 32/120 (26%), Gaps = 11/120 (9%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
+ + + + +G+++EA +R +D + LAA +
Sbjct: 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQ 87
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
QA Y A + + G A FE + +
Sbjct: 88 QAAD-----------LYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136
Score = 75.6 bits (186), Expect = 3e-16
Identities = 17/100 (17%), Positives = 33/100 (33%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
+ + + + +G+++EA +R +D + LAA +
Sbjct: 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQ 87
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
QA Y A + Y G L +AK+ +
Sbjct: 88 QAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECF 127
Score = 71.0 bits (174), Expect = 1e-14
Identities = 12/92 (13%), Positives = 34/92 (36%)
Query: 51 IHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 110
+ +++++ F + + L +Y+ + Q Q+A + Y A L +
Sbjct: 45 DFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104
Query: 111 DGYINLAAALVAAGDMEQAVQAYVTALQYNPD 142
+ + +A + + +Q++ D
Sbjct: 105 TPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136
Score = 69.1 bits (169), Expect = 6e-14
Identities = 15/105 (14%), Positives = 38/105 (36%), Gaps = 8/105 (7%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
+ +++++ F + + L +Y+ + Q Q+A + Y A L +
Sbjct: 47 YNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNP--------SCYLKAIE 658
+ + +A + + +Q++ YL AI+
Sbjct: 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAIQ 151
Score = 69.1 bits (169), Expect = 7e-14
Identities = 17/135 (12%), Positives = 39/135 (28%), Gaps = 14/135 (10%)
Query: 590 NLGNVYKERGQLQEALEN---YRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 646
N+ + +A+ + + + D +D + A G +E+A +
Sbjct: 4 NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63
Query: 647 QYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGN 706
Y+ L ++ + + A + A +L N + G
Sbjct: 64 IYDF-----------YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112
Query: 707 VLKEARIFDRANTLF 721
+ +A F
Sbjct: 113 CQLRLKAPLKAKECF 127
Score = 64.0 bits (156), Expect = 3e-12
Identities = 12/82 (14%), Positives = 29/82 (35%)
Query: 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277
E+ F + + L +Y+ + Q Q+A + Y A L + +
Sbjct: 54 EAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113
Query: 278 LVAAGDMEQAVQAYVTALQYNP 299
+ +A + + +Q++
Sbjct: 114 QLRLKAPLKAKECFELVIQHSN 135
Score = 59.4 bits (144), Expect = 2e-10
Identities = 12/74 (16%), Positives = 24/74 (32%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
+ + + + +G+++EA +R +D + LAA +
Sbjct: 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQ 87
Query: 286 QAVQAYVTALQYNP 299
QA Y A
Sbjct: 88 QAADLYAVAFALGK 101
Score = 56.7 bits (137), Expect = 1e-09
Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 14/121 (11%)
Query: 81 NLGNVYKERGQLQEALEN---YRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 137
N+ + +A+ + + + D +D + A G +E+A +
Sbjct: 4 NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63
Query: 138 QYNPDLYCVRSDLGNLLKALGRLDEAKDLY--CVRSD---------LGNLLKALGRLDEA 186
Y+ L + + + +A DLY G L +A
Sbjct: 64 IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKA 123
Query: 187 K 187
K
Sbjct: 124 K 124
Score = 35.9 bits (83), Expect = 0.018
Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 239 NLGNVYKERGQLQEALEN---YRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
N+ + +A+ + + + D +D + A G +E+A +
Sbjct: 4 NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63
Query: 296 QYNP 299
Y+
Sbjct: 64 IYDF 67
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 79.6 bits (196), Expect = 6e-16
Identities = 48/316 (15%), Positives = 78/316 (24%), Gaps = 47/316 (14%)
Query: 14 LAHREYQAGDYESAERHCMQLWRQETNNTG-----VLLLLSSIHFQCRKLDKS------A 62
A G+ + AER + +L + +L +S
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79
Query: 63 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYI 114
+ + +G LQ A E A +L P
Sbjct: 80 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 139
Query: 115 NLAAALVAAGDMEQAVQAYVTALQYN-----PDLYCVRSDLGNLLKALGRLDEAKDLYCV 169
A L A +++A + + ++ + L A G LD A+
Sbjct: 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQ--- 196
Query: 170 RSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPT---TLESAHFSTLA 226
L L LG + + I G K L A
Sbjct: 197 ---LNRLENLLGNGKYHSDWIS------NANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 247
Query: 227 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR------LKPDFIDGYINLAAALVA 280
N L + N+ G+ + A L D + L
Sbjct: 248 --NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 305
Query: 281 AGDMEQAVQAYVTALQ 296
AG A + + AL+
Sbjct: 306 AGRKSDAQRVLLDALK 321
Score = 68.1 bits (166), Expect = 4e-12
Identities = 33/238 (13%), Positives = 62/238 (26%), Gaps = 52/238 (21%)
Query: 69 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD-----FIDGYINLAAALVAA 123
I+++ + AE + V G EA + A+ P I L L
Sbjct: 7 IREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK 66
Query: 124 GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRL 183
G++ +++ Q + AL L +L A G L
Sbjct: 67 GELTRSLALMQQTEQ-------MARQHDVWHYALWSL----------IQQSEILFAQGFL 109
Query: 184 DEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNV 243
A + + + ++Q P+ +
Sbjct: 110 QTAWETQEK-----------------------AFQLIN--EQHLEQLPMHEFLVRIRAQL 144
Query: 244 YKERGQLQEALENYRHAVRLK-----PDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
+L EA + R + + + L +A GD++ A
Sbjct: 145 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN 202
Score = 66.2 bits (161), Expect = 2e-11
Identities = 37/303 (12%), Positives = 77/303 (25%), Gaps = 68/303 (22%)
Query: 2 NDIAQLGIGLLELAHREYQAGDYESAE---RHCMQLWRQETNNTGV---LLLLSSIHFQC 55
+ L + G+ + + Q+ RQ L+ S I F
Sbjct: 47 GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 106
Query: 56 RKLDKS--------AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK- 106
L + + ++Q P+ + +L EA + R + +
Sbjct: 107 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166
Query: 107 ----PDFIDGYINLAAALVAAGDMEQAVQAYVTALQ------YNPDLYC-VRSDLGNLLK 155
+ L +A GD++ A Y+ D +
Sbjct: 167 SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 226
Query: 156 ALGRLDEAKDLYCVRSD---------------LGNLLKALGRLDEAKNLHTENIKPVTMK 200
G A + + + LG + A+ +
Sbjct: 227 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIV----------- 275
Query: 201 VQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHA 260
LE + + +++ L L +Y + G+ +A A
Sbjct: 276 ----------------LEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319
Query: 261 VRL 263
++L
Sbjct: 320 LKL 322
Score = 54.6 bits (131), Expect = 6e-08
Identities = 23/151 (15%), Positives = 42/151 (27%), Gaps = 14/151 (9%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK------PDFIDGYINLAAALVAAGDM 635
A S LG V +G+L +L + ++ + I + L A G +
Sbjct: 50 YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL 109
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL-- 693
+ A + A Q +L+ + P + A + A + +
Sbjct: 110 QTAWETQEKAFQLINEQHLEQL---PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166
Query: 694 ---DPNFLDAYINLGNVLKEARIFDRANTLF 721
L L D A +
Sbjct: 167 SYQPQQQLQCLAMLIQCSLARGDLDNARSQL 197
Score = 52.7 bits (126), Expect = 3e-07
Identities = 26/157 (16%), Positives = 44/157 (28%), Gaps = 18/157 (11%)
Query: 578 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD-----FIDGYINLAAALVAA 632
I+++ + AE + V G EA + A+ P I L L
Sbjct: 7 IREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK 66
Query: 633 GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
G++ +++ Q + + + + AQG + A EKA
Sbjct: 67 GELTRSLALMQQTEQMA-----RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ 121
Query: 693 L--------DPNFLDAYINLGNVLKEARIFDRANTLF 721
L P +L D A
Sbjct: 122 LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 158
Score = 51.1 bits (122), Expect = 9e-07
Identities = 27/218 (12%), Positives = 55/218 (25%), Gaps = 65/218 (29%)
Query: 87 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCV 146
+ + ++ + +A+R A + G+ ++A + AL+ P
Sbjct: 3 EIKDIREDTMHAEFNALR------------AQVAINDGNPDEAERLAKLALEELPP---- 46
Query: 147 RSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIV 206
S LG +L G L + L
Sbjct: 47 --------------GWFYSRIVATSVLGEVLHCKGELTRSLAL----------------- 75
Query: 207 CNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-- 264
++ + + +G LQ A E A +L
Sbjct: 76 ----------MQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 125
Query: 265 ------PDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
P A L A +++A + + ++
Sbjct: 126 QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 163
Score = 49.2 bits (117), Expect = 4e-06
Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 14/120 (11%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAG 633
+ + +G LQ A E A +L P A L A
Sbjct: 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA 149
Query: 634 DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693
+++A + + ++ S + L A+G++ A + +L
Sbjct: 150 RLDEAEASARSGIEVLSSYQP------QQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 203
Score = 48.4 bits (115), Expect = 6e-06
Identities = 17/140 (12%), Positives = 37/140 (26%), Gaps = 15/140 (10%)
Query: 579 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-----PDFIDGYINLAAALVAAG 633
+Q P+ + +L EA + R + + + L +A G
Sbjct: 129 EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARG 188
Query: 634 DMEQAVQAYVTALQYNPSCYLKAIETRPDF-AVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
D++ A L + D+ + A + G+ A +
Sbjct: 189 DLDNARSQLNRLEN-----LLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243
Query: 693 LD----PNFLDAYINLGNVL 708
+ + N+
Sbjct: 244 PEFANNHFLQGQWRNIARAQ 263
Score = 45.0 bits (106), Expect = 8e-05
Identities = 17/116 (14%), Positives = 33/116 (28%), Gaps = 9/116 (7%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRL----KPDFIDGYINLAAALVAAGDMEQ 637
++ A ++ G A RH + + N+A A + G+ E
Sbjct: 212 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEP 271
Query: 638 AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693
A + +++ D L ++ G A A+ L
Sbjct: 272 AEIVLEELNE-----NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322
Score = 43.4 bits (102), Expect = 2e-04
Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 6/73 (8%)
Query: 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVR------LKPDFIDGYINLAAALVAAGD 634
N L + N+ G+ + A L D + L AG
Sbjct: 249 NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 308
Query: 635 MEQAVQAYVTALQ 647
A + + AL+
Sbjct: 309 KSDAQRVLLDALK 321
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 74.9 bits (184), Expect = 1e-15
Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 15/144 (10%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD-- 634
I+ NP +E ++ LG Y + +L YR A++L+ + + Y LA L
Sbjct: 36 KIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQH 95
Query: 635 -MEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693
Q AL + + A L Q AI ++K + L
Sbjct: 96 MTAQTRAMIDKALALD-----------SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144
Query: 694 DPNFLDAYINLGNVLKEARIFDRA 717
+ ++ + + + A++ R
Sbjct: 145 NSPRINRTQLVES-INMAKLLQRR 167
Score = 74.1 bits (182), Expect = 2e-15
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 3/103 (2%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD-- 125
I+ NP +E ++ LG Y + +L YR A++L+ + + Y LA L
Sbjct: 36 KIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQH 95
Query: 126 -MEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
Q AL + + L + +A +L+
Sbjct: 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW 138
Score = 71.4 bits (175), Expect = 2e-14
Identities = 26/221 (11%), Positives = 60/221 (27%), Gaps = 58/221 (26%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
+ + + + + + L+ + +R P + + L + D ++ AY
Sbjct: 10 YQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQ 69
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIK 195
ALQ + + + L +L + +D+A
Sbjct: 70 ALQLRGENAELYAALATVLYYQA-------------SQHMTAQTRAMIDKA--------- 107
Query: 196 PVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALE 255
+ + A L + + +A+E
Sbjct: 108 -------------------------------LALDSNEITALMLLASDAFMQANYAQAIE 136
Query: 256 NYRHAVRLKPDFIDGY-----INLAAALVAAGDMEQAVQAY 291
++ + L I+ IN+A L D+E +
Sbjct: 137 LWQKVMDLNSPRINRTQLVESINMAKLLQRRSDLEHHHHHH 177
Score = 66.8 bits (163), Expect = 8e-13
Identities = 21/136 (15%), Positives = 50/136 (36%), Gaps = 14/136 (10%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
+ + + + + + L+ + +R P + + L + D ++ AY
Sbjct: 10 YQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYR- 68
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL---AIHHFEKAVSLDPNFLDAY 701
+A++ R + A ++ L V Q + +KA++LD N + A
Sbjct: 69 ----------QALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITAL 118
Query: 702 INLGNVLKEARIFDRA 717
+ L + + +A
Sbjct: 119 MLLASDAFMQANYAQA 134
Score = 59.5 bits (144), Expect = 2e-10
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD-- 283
I+ NP +E ++ LG Y + +L YR A++L+ + + Y LA L
Sbjct: 36 KIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQH 95
Query: 284 -MEQAVQAYVTALQYNP 299
Q AL +
Sbjct: 96 MTAQTRAMIDKALALDS 112
Score = 54.5 bits (131), Expect = 1e-08
Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 3/135 (2%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
+ H+ + E+ + R N+ LL + S A++
Sbjct: 13 QRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ 72
Query: 71 QNPLLAEAYSNLGNVYKERGQLQ---EALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
AE Y+ L V + + A+ L + I + LA+ +
Sbjct: 73 LRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYA 132
Query: 128 QAVQAYVTALQYNPD 142
QA++ + + N
Sbjct: 133 QAIELWQKVMDLNSP 147
Score = 53.7 bits (129), Expect = 2e-08
Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 8/132 (6%)
Query: 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTL-- 67
L DY ++ Q + N + L+++ + +A +
Sbjct: 46 QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMID 105
Query: 68 -AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY-----INLAAALV 121
A+ + A L + + +A+E ++ + L I+ IN+A L
Sbjct: 106 KALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQ 165
Query: 122 AAGDMEQAVQAY 133
D+E +
Sbjct: 166 RRSDLEHHHHHH 177
Score = 53.7 bits (129), Expect = 3e-08
Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 14/101 (13%)
Query: 624 NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLA 683
+ + + E +QA ++ NP + W+ LG + Q + +
Sbjct: 15 DPLHQFASQQNPEAQLQALQDKIRANP-----------QNSEQWALLGEYYLWQNDYSNS 63
Query: 684 IHHFEKAVSLDPNFLDAYINLGNVLKEA---RIFDRANTLF 721
+ + +A+ L + Y L VL + + +
Sbjct: 64 LLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMI 104
Score = 47.6 bits (113), Expect = 3e-06
Identities = 21/188 (11%), Positives = 46/188 (24%), Gaps = 59/188 (31%)
Query: 115 NLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLG 174
+ + + E +QA ++ NP ++ LG
Sbjct: 15 DPLHQFASQQNPEAQLQALQDKIRANPQ-------------------NSEQWAL----LG 51
Query: 175 NLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLA 234
+ + + A++ A
Sbjct: 52 EYYLWQNDYSNSLLAYRQ---------------------------------ALQLRGENA 78
Query: 235 EAYSNLGNVYKERGQLQ---EALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291
E Y+ L V + + A+ L + I + LA+ + QA++ +
Sbjct: 79 ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW 138
Query: 292 VTALQYNP 299
+ N
Sbjct: 139 QKVMDLNS 146
Score = 47.2 bits (112), Expect = 4e-06
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY-----INLAAALVA 631
A+ + A L + + +A+E ++ + L I+ IN+A L
Sbjct: 107 ALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQR 166
Query: 632 AGDMEQAVQAY 642
D+E +
Sbjct: 167 RSDLEHHHHHH 177
Score = 46.8 bits (111), Expect = 5e-06
Identities = 10/66 (15%), Positives = 24/66 (36%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
+ + + + + + L+ + +R P + + L + D ++ AY
Sbjct: 10 YQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQ 69
Query: 294 ALQYNP 299
ALQ
Sbjct: 70 ALQLRG 75
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 77.1 bits (189), Expect = 1e-15
Identities = 32/234 (13%), Positives = 63/234 (26%), Gaps = 21/234 (8%)
Query: 74 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 133
L AY +++ + AVR+ A L + + V
Sbjct: 39 FLYRAYLAQRKYGVVLDEIKPSSAPELQAVRM----------FAEYLASHSRRDAIVAEL 88
Query: 134 VTALQYNPDLY--CVRSDLGNLLKALGRLDEAKDLYCVRSDL------GNLLKALGRLDE 185
+ + D+ ++ D A L +L L RLD
Sbjct: 89 DREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDL 148
Query: 186 AKNLHTE--NIKPVTMKVQNAIVCNYGGRKPTTLESA-HFSTLAIKQNPLLAEAYSNLGN 242
A+ + + Q A L+ A + + +
Sbjct: 149 ARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAA 208
Query: 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
+ +G+ + A + A+ + INL G + Y++ L+
Sbjct: 209 CHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262
Score = 66.3 bits (161), Expect = 7e-12
Identities = 21/133 (15%), Positives = 40/133 (30%), Gaps = 9/133 (6%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
L E + + + +L A + + D + A +AAG
Sbjct: 121 LRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGG- 179
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP 695
E+ AY + + + + + AQG A ++A+ D
Sbjct: 180 EKLQDAY--------YIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231
Query: 696 NFLDAYINLGNVL 708
+ INL +
Sbjct: 232 GHPETLINLVVLS 244
Score = 65.9 bits (160), Expect = 8e-12
Identities = 27/159 (16%), Positives = 55/159 (34%), Gaps = 7/159 (4%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
LL A + + ++A R + ++ + + I + +LD +
Sbjct: 104 LLMAASIYFYDQNPDAALRTL-----HQGDSLECMAMTVQILLKLDRLDLARKELKKMQD 158
Query: 71 QNP--LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 128
Q+ L + + ++ +LQ+A ++ + AA +A G E
Sbjct: 159 QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEA 218
Query: 129 AVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
A AL + +L L + LG+ E + Y
Sbjct: 219 AEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRY 257
Score = 59.4 bits (143), Expect = 1e-09
Identities = 17/159 (10%), Positives = 42/159 (26%), Gaps = 7/159 (4%)
Query: 12 LELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQC--RKLDKSAHFSTLAI 69
+ + A + ++ Q+ + T L + + KL + +
Sbjct: 134 AMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMA 193
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
+ + + +G+ + A + A+ + INL G +
Sbjct: 194 DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEV 253
Query: 130 VQAYVTAL-QYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
Y++ L + + D Y
Sbjct: 254 TNRYLSQLKDAHRSH----PFIKEYRAKENDFDRLVLQY 288
Score = 56.7 bits (136), Expect = 1e-08
Identities = 18/152 (11%), Positives = 43/152 (28%), Gaps = 16/152 (10%)
Query: 574 STLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 633
++ L + + ++ +LQ+A ++ + AA +A G
Sbjct: 155 KMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQG 214
Query: 634 DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF-EKAVS 692
E A +A++ NL + G+ + + +
Sbjct: 215 RWEAAEG-----------VLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263
Query: 693 LDPNFLDAYINLGNVLKEARIFDRANTLFYVS 724
+ + + + FDR + S
Sbjct: 264 AHRS----HPFIKEYRAKENDFDRLVLQYAPS 291
Score = 53.6 bits (128), Expect = 1e-07
Identities = 11/83 (13%), Positives = 26/83 (31%)
Query: 565 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 624
KL + + + + + +G+ + A + A+ + IN
Sbjct: 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239
Query: 625 LAAALVAAGDMEQAVQAYVTALQ 647
L G + Y++ L+
Sbjct: 240 LVVLSQHLGKPPEVTNRYLSQLK 262
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 78.3 bits (193), Expect = 2e-15
Identities = 23/156 (14%), Positives = 50/156 (32%), Gaps = 17/156 (10%)
Query: 578 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-------KPDFIDGYINLAAALV 630
+ + AE + + Y Q ++ + A+ + I +A
Sbjct: 134 VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193
Query: 631 AAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKA 690
++A+ AL+ I+ A++ N+ ++ G+ +A+ HF+KA
Sbjct: 194 DFKHYDKALPHLEAALE-----LAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248
Query: 691 VSL-----DPNFLDAYINLGNVLKEARIFDRANTLF 721
+ L L +A +A
Sbjct: 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFI 284
Score = 70.6 bits (173), Expect = 5e-13
Identities = 31/266 (11%), Positives = 67/266 (25%), Gaps = 55/266 (20%)
Query: 69 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-------KPDFIDGYINLAAALV 121
+ + AE + + Y Q ++ + A+ + I +A
Sbjct: 134 VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193
Query: 122 AAGDMEQAVQAYVTALQ------YNPDLYCVRSDLGNLLKALGRLDEAKDLY-------- 167
++A+ AL+ + + ++ N G A + +
Sbjct: 194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR 253
Query: 168 --------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLES 219
V L L G+ +A E + +
Sbjct: 254 EKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD-HITARSH---------------- 296
Query: 220 AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 279
K L + + ++ + L + L + AA
Sbjct: 297 --------KFYKELFLFLQAVYKETVDERKIHDLLSYFE-KKNLHAYIEACARSAAAVFE 347
Query: 280 AAGDMEQAVQAYVTALQYNPLLKKED 305
++ EQA Y L+ + K +
Sbjct: 348 SSCHFEQAAAFYRKVLKAQEDILKGE 373
Score = 69.8 bits (171), Expect = 1e-12
Identities = 36/237 (15%), Positives = 69/237 (29%), Gaps = 54/237 (22%)
Query: 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGD 125
L + G ++ + EA+ YR A + + + + +A A
Sbjct: 97 GLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQ 156
Query: 126 MEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDE 185
++ + AL + L + D + KAL L+
Sbjct: 157 THVSMYHILQALDIYQNHPLYSIRTIQSLFVIA---------GNYDDFKHYDKALPHLEA 207
Query: 186 AKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYK 245
A L + I+ + +A + N+ N Y
Sbjct: 208 ALELAMD----------------------------------IQNDRFIAISLLNIANSYD 233
Query: 246 ERGQLQEALENYRHAVRLK-----PDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 297
G Q A+E+++ A ++ L+ L AG ++A Q L +
Sbjct: 234 RSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290
Score = 67.1 bits (164), Expect = 6e-12
Identities = 32/264 (12%), Positives = 69/264 (26%), Gaps = 67/264 (25%)
Query: 19 YQAGDYESAERHCMQ-------LWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK- 70
Y + H +Q L +++ + + DK+ A++
Sbjct: 152 YHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL 211
Query: 71 -----QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-----PDFIDGYINLAAAL 120
+ +A + N+ N Y G Q A+E+++ A ++ L+ L
Sbjct: 212 AMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271
Query: 121 VAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKAL 180
AG ++A Q L + L L +Y D + L
Sbjct: 272 CKAGQTQKAFQFIEEGLDHITARS--HKFYKELFLFLQ------AVYKETVDERKIHDLL 323
Query: 181 GRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNL 240
++ + +
Sbjct: 324 SYFEKKNLH-----------------------------------------AYIEACARSA 342
Query: 241 GNVYKERGQLQEALENYRHAVRLK 264
V++ ++A YR ++ +
Sbjct: 343 AAVFESSCHFEQAAAFYRKVLKAQ 366
Score = 66.0 bits (161), Expect = 2e-11
Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 9/150 (6%)
Query: 578 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-----PDFIDGYINLAAALVAA 632
I+ + +A + N+ N Y G Q A+E+++ A ++ L+ L A
Sbjct: 215 IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKA 274
Query: 633 GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
G ++A Q L + + K + F + + +I + +FEK +
Sbjct: 275 GQTQKAFQFIEEGLDHITARSHKFYKELFLFL---QAVYKETVDERKIHDLLSYFEKK-N 330
Query: 693 LDPNFLDAYINLGNVLKEARIFDRANTLFY 722
L + V + + F++A +
Sbjct: 331 LHAYIEACARSAAAVFESSCHFEQAAAFYR 360
Score = 58.3 bits (141), Expect = 5e-09
Identities = 17/166 (10%), Positives = 51/166 (30%), Gaps = 27/166 (16%)
Query: 578 IKQNPLLAEAYSNLGNVYK-------------ERGQLQEALENYRHAVRLKPDFIDGYIN 624
++++ L YS + ++ R + E LE + + Y
Sbjct: 45 MEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSL 104
Query: 625 LAAALVAA--GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL 682
+ + +A+ Y A + L + + A + + + +
Sbjct: 105 FFRGMYEFDQKEYVEAIGYYREAEKE-----LPFVSDDIEKAEFHFKVAEAYYHMKQTHV 159
Query: 683 AIHHFEKAVSL-------DPNFLDAYINLGNVLKEARIFDRANTLF 721
+++H +A+ + + + + + + +D+A
Sbjct: 160 SMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHL 205
Score = 56.0 bits (135), Expect = 2e-08
Identities = 18/114 (15%), Positives = 29/114 (25%), Gaps = 6/114 (5%)
Query: 579 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID-GYINLAAALVAAGDMEQ 637
K LL + L + GQ Q+A + + Y L L A
Sbjct: 255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV 314
Query: 638 AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691
+ L Y + + VF + A + K +
Sbjct: 315 DERKIHDLLSY-----FEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363
Score = 40.2 bits (94), Expect = 0.002
Identities = 28/238 (11%), Positives = 61/238 (25%), Gaps = 62/238 (26%)
Query: 69 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 128
++++ L YS + ++ E + Y N +E
Sbjct: 45 MEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYG--------------NRPTVTELLETIET 90
Query: 129 AVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKN 188
+ L+Y + G EA Y +A L +
Sbjct: 91 PQKKLTGLLKYYSLFF-----RGMYEFDQKEYVEAIGYY---------REAEKELPFVSD 136
Query: 189 LHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERG 248
++ A +AEAY ++ +
Sbjct: 137 -----------DIEKAEFHFK-----------------------VAEAYYHMKQTHVSMY 162
Query: 249 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDG 306
+ +AL+ Y++ I +A ++A+ AL+ ++ +
Sbjct: 163 HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220
Score = 36.7 bits (85), Expect = 0.034
Identities = 4/38 (10%), Positives = 14/38 (36%)
Query: 578 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 615
+ + + V++ ++A YR ++ +
Sbjct: 329 KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366
Score = 32.5 bits (74), Expect = 0.55
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 1/69 (1%)
Query: 579 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 638
K L + + ++ + L + L + AA ++ EQA
Sbjct: 297 KFYKELFLFLQAVYKETVDERKIHDLLSYFE-KKNLHAYIEACARSAAAVFESSCHFEQA 355
Query: 639 VQAYVTALQ 647
Y L+
Sbjct: 356 AAFYRKVLK 364
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 76.5 bits (188), Expect = 4e-15
Identities = 31/234 (13%), Positives = 54/234 (23%), Gaps = 57/234 (24%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQA 129
A Y+ +K QL++A + Y + L M +A
Sbjct: 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEA 95
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNL 189
VQ A + G D A L G+L E +L
Sbjct: 96 VQYIEKAS--------------VMYVENGTPDTA----------AMALDRAGKLMEPLDL 131
Query: 190 HTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 249
A+ + A ++ AE + + +
Sbjct: 132 ------------SKAVHL---------YQQAAAVFENEERLRQAAELIGKASRLLVRQQK 170
Query: 250 LQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 297
EA + + + P I + D A + +
Sbjct: 171 FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI 224
Score = 57.2 bits (138), Expect = 8e-09
Identities = 24/149 (16%), Positives = 43/149 (28%), Gaps = 18/149 (12%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQA 638
A Y+ +K QL++A + Y + L M +A
Sbjct: 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEA 95
Query: 639 VQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF- 697
VQ A PD A + ++ A+H +++A ++ N
Sbjct: 96 VQYIEKASVMYVENG------TPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEE 149
Query: 698 -----LDAYINLGNVLKEARIFDRANTLF 721
+ +L + FD A
Sbjct: 150 RLRQAAELIGKASRLLVRQQKFDEAAASL 178
Score = 51.8 bits (124), Expect = 4e-07
Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 13/122 (10%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG------YINLAAALVAAGDMEQA 638
A A G + E L +A+ Y+ A + + + LV ++A
Sbjct: 116 AMALDRAGKLM-EPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEA 174
Query: 639 VQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL 698
+ K +E P V + + A ++ S+ P F
Sbjct: 175 AASLQKEKSMY-----KEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI-PGFS 228
Query: 699 DA 700
+
Sbjct: 229 GS 230
Score = 38.3 bits (89), Expect = 0.008
Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 6/93 (6%)
Query: 631 AAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKA 690
AA + +A + A +Y + ++K A ++ F ++ A + +
Sbjct: 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQE 62
Query: 691 VSLDPNFLD------AYINLGNVLKEARIFDRA 717
N A+ G +LK+ + A
Sbjct: 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEA 95
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 70.9 bits (174), Expect = 6e-15
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 576 LAIKQN-PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
+A LAE Y LG+ ++ G+ ++A + V+ P+ + A L G
Sbjct: 17 IASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR 76
Query: 635 MEQAVQAYVTALQYNPS-----CYLKAIETRPD 662
EQ V+ + + Y +AI D
Sbjct: 77 YEQGVELLLKIIAETSDDETIQSYKQAILFYAD 109
Score = 68.6 bits (168), Expect = 3e-14
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 90 GQLQEALENYRHAVRLK---PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCV 146
G +A+ Y A+ D + Y+ L + G+ +A ++ P+ +
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 147 RSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLH 190
R +L LGR ++ + LLK + + + +
Sbjct: 64 RVFYAMVLYNLGRYEQG---------VELLLKIIAETSDDETIQ 98
Score = 67.8 bits (166), Expect = 7e-14
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 67 LAIKQN-PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 125
+A LAE Y LG+ ++ G+ ++A + V+ P+ + A L G
Sbjct: 17 IASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR 76
Query: 126 MEQAVQAYVTALQYNPD 142
EQ V+ + + D
Sbjct: 77 YEQGVELLLKIIAETSD 93
Score = 67.1 bits (164), Expect = 1e-13
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 225 LAIKQN-PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
+A LAE Y LG+ ++ G+ ++A + V+ P+ + A L G
Sbjct: 17 IASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR 76
Query: 284 MEQAVQAYVTALQYNP 299
EQ V+ + +
Sbjct: 77 YEQGVELLLKIIAETS 92
Score = 63.2 bits (154), Expect = 3e-12
Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 14/101 (13%)
Query: 599 GQLQEALENYRHAVRLK---PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLK 655
G +A+ Y A+ D + Y+ L + G+ +A +
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAE-----------AVLAN 52
Query: 656 AIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
++ P+ V G + K ++ +
Sbjct: 53 GVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93
Score = 61.3 bits (149), Expect = 1e-11
Identities = 23/102 (22%), Positives = 29/102 (28%), Gaps = 8/102 (7%)
Query: 633 GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
G QAV Y A+ D A + LG F GE A V
Sbjct: 4 GLEAQAVPYYEKAIASGLQ--------GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK 55
Query: 693 LDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDI 734
PN + VL +++ L DE I
Sbjct: 56 QFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETI 97
Score = 46.6 bits (111), Expect = 2e-06
Identities = 21/143 (14%), Positives = 33/143 (23%), Gaps = 53/143 (37%)
Query: 124 GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRL 183
G QAV Y A+ KDL LG+ + LG
Sbjct: 4 GLEAQAVPYYEKAIASGLQ--------------------GKDLAECYLGLGSTFRTLGEY 43
Query: 184 DEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNV 243
+A+ + +KQ P V
Sbjct: 44 RKAEAVLAN---------------------------------GVKQFPNHQALRVFYAMV 70
Query: 244 YKERGQLQEALENYRHAVRLKPD 266
G+ ++ +E + D
Sbjct: 71 LYNLGRYEQGVELLLKIIAETSD 93
Score = 42.8 bits (101), Expect = 5e-05
Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 3/90 (3%)
Query: 22 GDYESAERHC---MQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78
G A + + Q + L L S + K+ +KQ P
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 79 YSNLGNVYKERGQLQEALENYRHAVRLKPD 108
V G+ ++ +E + D
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSD 93
Score = 38.9 bits (91), Expect = 0.001
Identities = 8/52 (15%), Positives = 16/52 (30%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 617
+ K+ +KQ P V G+ ++ +E + D
Sbjct: 42 EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93
Score = 38.5 bits (90), Expect = 0.001
Identities = 9/48 (18%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 677 QGEIWLAIHHFEKAVSL---DPNFLDAYINLGNVLKEARIFDRANTLF 721
G A+ ++EKA++ + + Y+ LG+ + + +A +
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVL 50
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 75.6 bits (186), Expect = 1e-14
Identities = 32/272 (11%), Positives = 82/272 (30%), Gaps = 40/272 (14%)
Query: 18 EYQAGDYESAERH---CMQLWRQETNNTGV---LLLLSSIHFQCRKLDKSAHFSTLAIK- 70
E +Y SA + + +S ++ ++ S ++ A +
Sbjct: 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI 172
Query: 71 ------QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAA 118
N L + +S + + Q ++A+ +++ A + N+
Sbjct: 173 YKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL 232
Query: 119 ALVAAGDMEQAVQAYVTALQYN------PDLYCVRSDLGNLLKALGRLDEAKDLYCVRSD 172
+ E A+ + A+ P L + + LG++D+A + +
Sbjct: 233 CKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYH----- 287
Query: 173 LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL 232
K + +A + + + G ++ +
Sbjct: 288 ----SKGMAYSQKAGD------VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYAD 337
Query: 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLK 264
L + ++ Y ER Q+A + +++
Sbjct: 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369
Score = 74.9 bits (184), Expect = 3e-14
Identities = 25/157 (15%), Positives = 54/157 (34%), Gaps = 18/157 (11%)
Query: 578 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-------KPDFIDGYINLAAALV 630
+K AE + + Y Q +++ R A + + + A +
Sbjct: 136 VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL 195
Query: 631 AAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKA 690
E A+ + A +A + N+G N+Q + AI +F++A
Sbjct: 196 DLKQYEDAISHFQKAYS-----MAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250
Query: 691 VSLD------PNFLDAYINLGNVLKEARIFDRANTLF 721
+++ P+ AY + + + D+A+
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYH 287
Score = 69.1 bits (169), Expect = 2e-12
Identities = 30/267 (11%), Positives = 72/267 (26%), Gaps = 56/267 (20%)
Query: 69 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-------KPDFIDGYINLAAALV 121
+K AE + + Y Q +++ R A + + + A +
Sbjct: 136 VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL 195
Query: 122 AAGDMEQAVQAYVTALQ------YNPDLYCVRSDLGNLLKALGRLDEAKDLY-------- 167
E A+ + A + ++G + + ++A +
Sbjct: 196 DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE 255
Query: 168 ---------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLE 218
+ + LG++D+A H++ + G
Sbjct: 256 ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA---------YSQKAGD------- 299
Query: 219 SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 278
E +L + +Q + + L D D I++A
Sbjct: 300 ---------VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE-SKMLYADLEDFAIDVAKYY 349
Query: 279 VAAGDMEQAVQAYVTALQYNPLLKKED 305
+ ++A ++ Q L++
Sbjct: 350 HERKNFQKASAYFLKVEQVRQLIQGGV 376
Score = 68.3 bits (167), Expect = 3e-12
Identities = 27/252 (10%), Positives = 65/252 (25%), Gaps = 57/252 (22%)
Query: 69 IKQNPLLAEAYSNL--GNVYKERGQLQEALENYRHAVRLKPDFIDG------YINLAAAL 120
+ L E Y N G ++ + A++ ++ A D + ++ +
Sbjct: 94 QARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESY 153
Query: 121 VAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKAL 180
++ A + + L DL A+
Sbjct: 154 YYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA---------TNFLDLKQYEDAI 204
Query: 181 GRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNL 240
+A ++ KQ L+ N+
Sbjct: 205 SHFQKAYSMAEA----------------------------------EKQPQLMGRTLYNI 230
Query: 241 GNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQAVQAYVTA 294
G + Q ++A+ ++ A+ + P Y + G +++A + +
Sbjct: 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG 290
Query: 295 LQYNPLLKKEDG 306
+ Y+
Sbjct: 291 MAYSQKAGDVIY 302
Score = 62.5 bits (152), Expect = 2e-10
Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 10/152 (6%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALV 630
A KQ L+ N+G + Q ++A+ ++ A+ + P Y +
Sbjct: 216 AEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY 275
Query: 631 AAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKA 690
G +++A + + + Y+ + +F +L + I E
Sbjct: 276 KLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL---KSLYLSGPDEEAIQGFFDFLESK 332
Query: 691 VSLDPNFLDAYINLGNVLKEARIFDRANTLFY 722
L + D I++ E + F +A+ F
Sbjct: 333 -MLYADLEDFAIDVAKYYHERKNFQKASAYFL 363
Score = 57.9 bits (140), Expect = 6e-09
Identities = 17/123 (13%), Positives = 44/123 (35%), Gaps = 10/123 (8%)
Query: 576 LAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID-GYINLAAALV 630
+A+ + P L +AY + ++ + G++ +A E + + D Y++ L
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310
Query: 631 AAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKA 690
+ +A + L++ D ++ ++ + A +F K
Sbjct: 311 SLYLSGPDEEAIQGFFDF-----LESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKV 365
Query: 691 VSL 693
+
Sbjct: 366 EQV 368
Score = 50.6 bits (121), Expect = 1e-06
Identities = 16/159 (10%), Positives = 50/159 (31%), Gaps = 14/159 (8%)
Query: 568 DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 627
D ++S + + N +L +E+ +L + L ++ Y N
Sbjct: 50 DLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFR 109
Query: 628 ALVAA--GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
+ + A++ + A L ++ R + A + + + + + ++
Sbjct: 110 GMYELDQREYLSAIKFFKKAESK-----LIFVKDRIEKAEFFFKMSESYYYMKQTYFSMD 164
Query: 686 HFEKAVSLDPNFLD-------AYINLGNVLKEARIFDRA 717
+ +A + + + + ++ A
Sbjct: 165 YARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDA 203
Score = 39.0 bits (91), Expect = 0.006
Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 7/113 (6%)
Query: 1 MNDIAQLGIGLLELAHREYQAGDYESAERH---CMQLWRQETNNTGVLLL--LSSIHFQC 55
N + L + Y+ G + A + M ++ + + L S++
Sbjct: 257 SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSG 316
Query: 56 RKLDK-SAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 106
+ F L K L + ++ Y ER Q+A + +++
Sbjct: 317 PDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369
Score = 35.2 bits (81), Expect = 0.086
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 578 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 615
L + ++ Y ER Q+A + +++
Sbjct: 332 KMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 74.3 bits (182), Expect = 4e-14
Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 30/240 (12%)
Query: 67 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG-D 125
+ I + + Y V + + + A + R A+ L + L + D
Sbjct: 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 147
Query: 126 MEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDE 185
+ + + ++ P Y V L++ L + + L + +
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIA---------DILNQ--D 196
Query: 186 AKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNV-- 243
AKN H + V L+ + +K++ ++ V
Sbjct: 197 AKNYHAWQHR--------QWVIQEFKLWDNELQ---YVDQLLKEDVRNNSVWNQRYFVIS 245
Query: 244 ----YKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
Y +R L+ ++ ++L P + N ++ + + L P
Sbjct: 246 NTTGYNDRAVLEREVQYTLEMIKLVPHNESAW-NYLKGILQDRGLSKYPNLLNQLLDLQP 304
Score = 67.4 bits (164), Expect = 5e-12
Identities = 18/142 (12%), Positives = 44/142 (30%), Gaps = 10/142 (7%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
+ I + + Y V + + + A + R A+ L + L +
Sbjct: 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ-- 145
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP 695
+ + Y IE +P W + + + + ++ D
Sbjct: 146 ----KDLHEEMNY----ITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA 197
Query: 696 NFLDAYINLGNVLKEARIFDRA 717
A+ + V++E +++D
Sbjct: 198 KNYHAWQHRQWVIQEFKLWDNE 219
Score = 63.6 bits (154), Expect = 1e-10
Identities = 17/168 (10%), Positives = 47/168 (27%), Gaps = 30/168 (17%)
Query: 565 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 624
+ L + ++ T I++ P + + + + + + LE + + +
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205
Query: 625 LAAALVAAGDMEQAVQAYVTALQYNPS-----------------------------CYLK 655
+ + +Q L+ + L+
Sbjct: 206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 265
Query: 656 AIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYIN 703
I+ P AW+ L + + + + + L P+ Y+
Sbjct: 266 MIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLI 312
Score = 59.7 bits (144), Expect = 2e-09
Identities = 27/253 (10%), Positives = 66/253 (26%), Gaps = 55/253 (21%)
Query: 56 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 115
+ L + ++ T I++ P + + + + + + LE + + +
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205
Query: 116 LAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGN 175
+ + +Q L+ + V + ++ ++
Sbjct: 206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV---------- 255
Query: 176 LLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAE 235
L+ E IK P
Sbjct: 256 -------LEREVQYTLE---------------------------------MIKLVPHNES 275
Query: 236 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA----LVAAGDMEQAVQAY 291
A++ L + ++RG L + + L+P Y+ + +
Sbjct: 276 AWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDIL 334
Query: 292 VTALQYNPLLKKE 304
AL+ +L KE
Sbjct: 335 NKALELCEILAKE 347
Score = 51.2 bits (122), Expect = 9e-07
Identities = 24/192 (12%), Positives = 52/192 (27%), Gaps = 45/192 (23%)
Query: 134 VTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDL-----------GNLLKALGR 182
V + Y+ V +L+ R + A L +L LLK+L +
Sbjct: 87 VVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK 146
Query: 183 LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242
E ++ T I++ P + + +
Sbjct: 147 DLH--------------------------------EEMNYITAIIEEQPKNYQVWHHRRV 174
Query: 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLK 302
+ + + LE + + + + + +Q L+ + +
Sbjct: 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV--R 232
Query: 303 KEDGWNTEPFVL 314
WN FV+
Sbjct: 233 NNSVWNQRYFVI 244
Score = 35.4 bits (81), Expect = 0.076
Identities = 9/64 (14%), Positives = 16/64 (25%)
Query: 647 QYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGN 706
Q + + I F + V A A+ L+ +
Sbjct: 80 QNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRV 139
Query: 707 VLKE 710
+LK
Sbjct: 140 LLKS 143
Score = 32.0 bits (72), Expect = 0.98
Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 5/108 (4%)
Query: 40 NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENY 99
N ++ ++ + L++ ++ IK P A++ L + ++RG L +
Sbjct: 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLL 296
Query: 100 RHAVRLKPDFIDGYINLAAA----LVAAGDMEQAVQAYVTALQYNPDL 143
+ L+P Y+ + + AL+ L
Sbjct: 297 NQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 68.8 bits (169), Expect = 6e-14
Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 11/133 (8%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
NP LA N GN ++G +A+++Y A++ P Y N AA + +
Sbjct: 8 HSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQ 67
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
A++ + I+ P F ++ A + A+ ++KA+ LD +
Sbjct: 68 LALK-----------DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 116
Query: 697 FLDAYINLGNVLK 709
+A +
Sbjct: 117 CKEAADGYQRCMM 129
Score = 67.3 bits (165), Expect = 2e-13
Identities = 31/91 (34%), Positives = 44/91 (48%)
Query: 66 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 125
T AIK+NP A+ YSN Y + + Q AL++ ++L+P FI GY AAAL A D
Sbjct: 40 TEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKD 99
Query: 126 MEQAVQAYVTALQYNPDLYCVRSDLGNLLKA 156
+A+ Y AL + + A
Sbjct: 100 YTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130
Score = 65.7 bits (161), Expect = 6e-13
Identities = 32/78 (41%), Positives = 44/78 (56%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
T AIK+NP A+ YSN Y + + Q AL++ ++L+P FI GY AAAL A D
Sbjct: 40 TEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKD 99
Query: 635 MEQAVQAYVTALQYNPSC 652
+A+ Y AL + SC
Sbjct: 100 YTKAMDVYQKALDLDSSC 117
Score = 64.6 bits (158), Expect = 1e-12
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
T AIK+NP A+ YSN Y + + Q AL++ ++L+P FI GY AAAL A D
Sbjct: 40 TEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKD 99
Query: 284 MEQAVQAYVTALQYNP 299
+A+ Y AL +
Sbjct: 100 YTKAMDVYQKALDLDS 115
Score = 54.9 bits (133), Expect = 4e-09
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
NP LA N GN ++G +A+++Y A++ P Y N AA + +
Sbjct: 8 HSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQ 67
Query: 128 QAVQAYVTALQYNPDLY--CVRSDLGNLLKALGRLDEAKDLY 167
A++ +Q P R L+A+ +A D+Y
Sbjct: 68 LALKDCEECIQLEPTFIKGYTR--KAAALEAMKDYTKAMDVY 107
Score = 53.8 bits (130), Expect = 1e-08
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 11/112 (9%)
Query: 606 ENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAV 665
++ H + PD N GD QA++ Y +AI+ P A
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMK-----------HYTEAIKRNPKDAK 51
Query: 666 AWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+SN + E LA+ E+ + L+P F+ Y L+ + + +A
Sbjct: 52 LYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKA 103
Score = 48.8 bits (117), Expect = 4e-07
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 18/109 (16%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
NP LA N GN ++G +A+++Y A++ P Y N AA + +
Sbjct: 8 HSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQ 67
Query: 286 QAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVMMKR 333
A++ +Q P F+ K R+ AL MK
Sbjct: 68 LALKDCEECIQLEP-----------TFI------KGYTRKAAALEAMKD 99
Score = 39.1 bits (92), Expect = 0.001
Identities = 8/60 (13%), Positives = 21/60 (35%)
Query: 66 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 125
I+ P + Y+ + +A++ Y+ A+ L + ++A +
Sbjct: 74 EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133
Score = 39.1 bits (92), Expect = 0.001
Identities = 8/60 (13%), Positives = 21/60 (35%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
I+ P + Y+ + +A++ Y+ A+ L + ++A +
Sbjct: 74 EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133
Score = 39.1 bits (92), Expect = 0.001
Identities = 8/60 (13%), Positives = 21/60 (35%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
I+ P + Y+ + +A++ Y+ A+ L + ++A +
Sbjct: 74 EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133
Score = 33.4 bits (77), Expect = 0.10
Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 15/105 (14%)
Query: 97 ENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD---LYCVRS----D 149
++ H + PD N GD QA++ Y A++ NP LY R+
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62
Query: 150 LGNLLKALGRLDEAKDL------YCVRSDLGNLLKALGRLDEAKN 188
L AL +E L R L+A+ +A +
Sbjct: 63 LLEFQLALKDCEECIQLEPTFIKGYTR--KAAALEAMKDYTKAMD 105
Score = 27.6 bits (62), Expect = 8.8
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 255 ENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
++ H + PD N GD QA++ Y A++ NP
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 74.9 bits (183), Expect = 8e-14
Identities = 104/645 (16%), Positives = 187/645 (28%), Gaps = 206/645 (31%)
Query: 250 LQEAL--ENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYV-TALQ--YNPL---L 301
+ L E H + D + G + L L++ E+ VQ +V L+ Y L +
Sbjct: 42 PKSILSKEEIDHIIMS-KDAVSGTLRLFWTLLSKQ--EEMVQKFVEEVLRINYKFLMSPI 98
Query: 302 KKED---GWNTEPFVLDFERRKALWRRGAL-----VMMKRPVLGLASAIESISANQEKCA 353
K E T ++ E+R L+ + V +P L L A+ + +
Sbjct: 99 KTEQRQPSMMTRMYI---EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK---- 151
Query: 354 VNIKIECASKDLHSGLFG-G------------SVHEAMTDLIY-I-MGQLVEPNGKILIP 398
N+ + G+ G G V M I+ + + P +L
Sbjct: 152 -NVL-------ID-GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET-VLEM 201
Query: 399 --HIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYP-SL--- 452
+ ++P + I + + L+ Y L
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR-----------LLKSKPYENCLLVL 250
Query: 453 ----SLHGIEGAFSGPGGKTVI-----------PGKVVGKFSI-RIVPNQTPQCVEKYVL 496
+ AF+ K ++ S+ TP V+ +L
Sbjct: 251 LNVQNAKAWN-AFNL-SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 497 DYLNELWKARNSPNK-----------FKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNV 545
YL+ + ++ P + + D +W N +H N + NV
Sbjct: 309 KYLDC--RPQDLPREVLTTNPRRLSIIAESIRDGLATW-DNWKHVNCDKLTTIIESSLNV 365
Query: 546 -EPDLTR----------EGGSIPITL---------TFECRKLDKSAHFSTLAIKQNPLLA 585
EP R IP L + + H +L KQ
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK--- 422
Query: 586 EAYSNLGNVY-------KERGQL-QEALENYRHAVR-----LKPDFIDGYINLAAALVAA 632
E+ ++ ++Y + L + +++Y L P ++D Y
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF--------- 473
Query: 633 GDMEQAVQAYVTALQYNPSCY-LKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691
Y+ + LK IE E F V
Sbjct: 474 ---------------YSHIGHHLKNIE------------------HPERMTL---FRM-V 496
Query: 692 SLDPNFLDAYINLGNVLKEARIFDRANTL----FYVSSYFMITDEDIDVILERCEAKTEE 747
LD FL+ I + A NTL FY Y I D D + E
Sbjct: 497 FLDFRFLEQKIRHDSTAWNAS-GSILNTLQQLKFY-KPY--ICDND-----PKYERLVNA 547
Query: 748 LNKKFEQLGESSLRD-------FTLDAPTQSVYKFEGEDYREKQK 785
+ ++ E+ + L A +++++ E +++ Q+
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE---EAHKQVQR 589
Score = 64.1 bits (155), Expect = 2e-10
Identities = 72/507 (14%), Positives = 146/507 (28%), Gaps = 185/507 (36%)
Query: 399 HIYKDVEPLGDTEEQFYEKIDF-DTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGI 457
+ YKD+ L E+ F + D D +D +I L+K + ++MS+ +
Sbjct: 16 YQYKDI--LSVFEDAFVDNFDCKDVQDMPKSI----LSKEEIDHIIMSK--------DAV 61
Query: 458 EGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLL 517
G + ++ + V+K+V + L +K +L+
Sbjct: 62 SGTL----------------RLFWTLLSKQEEMVQKFVEEVLRINYK----------FLM 95
Query: 518 DSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLA 577
+T P + Y+ + L +
Sbjct: 96 SP---IKTEQRQP----SMMTRMYIEQRDR-LYND------------------------- 122
Query: 578 IKQNPLLAEAYSNLGNVYKER--GQLQEALENYRHAVRLKPDFIDGYINLAAA----LVA 631
N + A+ NV + + +L++AL R A + IDG + + +
Sbjct: 123 ---NQVFAK-----YNVSRLQPYLKLRQALLELRPAKNV---LIDG---VLGSGKTWVAL 168
Query: 632 AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG--EIWLAIHHFEK 689
+Y ++ + DF + W NL + + E+ + +
Sbjct: 169 -----DVCLSY-------------KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY--- 207
Query: 690 AVSLDPNF---LDAYINLGNVLKEARIFDRANTLFYVSSY---FMITDEDIDV----ILE 739
+DPN+ D N+ + + L Y ++ +V
Sbjct: 208 --QIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLLKSKPYENCLLVLL---NVQNAKAWN 260
Query: 740 ----RCEAKTEEL----NKK-FEQLGESSLRDFTLDAPTQSVYKFEGEDY---------- 780
C K L K+ + L ++ +LD + ++ E +
Sbjct: 261 AFNLSC--KI--LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 781 ---REKQKIVP-----IGHWI-EPPKR-ERKANYAVDAYFKEALRTS----EPKAPKAPR 826
RE P I I + + + D + +S EP
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK-LTTIIESSLNVLEP------- 368
Query: 827 PPKQPIVQDFQFF------PPRLFEIL 847
+ + F P L ++
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLI 395
Score = 59.5 bits (143), Expect = 5e-09
Identities = 96/652 (14%), Positives = 190/652 (29%), Gaps = 198/652 (30%)
Query: 19 YQAGDYESAERHCMQLWRQETNNT------GVL-----LLLSSIHFQCRKLDKSAHFSTL 67
+ D S + VL L+S I + R S
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR--QPSMMTRMY 112
Query: 68 AIKQNPLL--AEAYSNLGNVYKER--GQLQEALENYRHAVRLKPDFIDGYIN-----LAA 118
+++ L + ++ NV + + +L++AL R A + IDG + +A
Sbjct: 113 IEQRDRLYNDNQVFAKY-NVSRLQPYLKLRQALLELRPAKNV---LIDGVLGSGKTWVAL 168
Query: 119 ALVAAGDMEQAVQ---AYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGN 175
+ + ++ + ++ N + L L K L ++D + RSD +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCN----SPETVLEMLQKLLYQIDPN---WTSRSDHSS 221
Query: 176 LLKALGRLDEAKNLHTENIKPVTMKVQNAI-----VCNYGGRKPTTLESAHFS--TLAIK 228
+K R+ + +K + +N + V N + + S L
Sbjct: 222 NIKL--RIHSIQAELRRLLK--SKPYENCLLVLLNVQN-----AKAWNAFNLSCKILLTT 272
Query: 229 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL-VAAGDM-EQ 286
+ + + S + L L L L D+ +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSL----------LLKYLDCRPQDLPRE 321
Query: 287 AVQAYVTALQYNPLL------KKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLAS 340
+ NP DG T ++ W+ V + L +
Sbjct: 322 VLTT-------NPRRLSIIAESIRDGLAT------WDN----WKH---VNCDK----LTT 357
Query: 341 AIESISANQE---------KCAV---NIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQL 388
IES E + +V + I + L S ++ + D++ ++ +L
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIP--TILL-SLIWFDVIKS---DVMVVVNKL 411
Query: 389 VE--------PNGKILIPHIYKDVEPLGDTEEQFYEKI--------DFDTEDF-RTAID- 430
+ I IP IY +++ + E + I FD++D +D
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 431 --------HPKLTKADKTQ--VLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSI 480
H L + + L + L +E
Sbjct: 472 YFYSHIGHH--LKNIEHPERMTLFRMV-F--LDFRFLEQ--------------------- 505
Query: 481 RIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARA-T 539
+I + T +L+ L +L +K Y+ D+ P Y A
Sbjct: 506 KIRHDSTAWNASGSILNTLQQL-------KFYKPYICDN---------DPKYERLVNAIL 549
Query: 540 KYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNL 591
++ +E +L + L + A L + + EA+ +
Sbjct: 550 DFLPKIEENLICS----------KYTDLLRIA----LMAEDEAIFEEAHKQV 587
Score = 36.4 bits (83), Expect = 0.051
Identities = 38/263 (14%), Positives = 91/263 (34%), Gaps = 53/263 (20%)
Query: 1 MNDIAQLGIGLLELA-HREYQAGDYESAERHCMQLWRQETN-NTGVLLLL--SSIHFQCR 56
+ I + + +LE A +R+ ++ + ++ + T +L L+ I
Sbjct: 355 LTTIIESSLNVLEPAEYRKM----FDR-----LSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 57 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVY-------KERGQL-QEALENYRHAVR---- 104
+ H +L KQ E+ ++ ++Y + L + +++Y
Sbjct: 406 VVVNKLHKYSLVEKQPK---ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 105 -LKPDFIDGYI--NLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLD 161
L P ++D Y ++ L + + + + ++ D L+ ++
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNI-EHPERMTLF-------RMVFL---DF-RFLEQ--KIR 508
Query: 162 EAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAH 221
+ + N L +L K +N P ++ NAI+ + + S +
Sbjct: 509 HDSTAWNASGSILNT---LQQLKFYKPYICDN-DPKYERLVNAILDFLPKIEENLICSKY 564
Query: 222 FSTLAI----KQNPLLAEAYSNL 240
L I + + EA+ +
Sbjct: 565 TDLLRIALMAEDEAIFEEAHKQV 587
Score = 33.3 bits (75), Expect = 0.40
Identities = 44/355 (12%), Positives = 98/355 (27%), Gaps = 105/355 (29%)
Query: 595 YKERGQLQEALENYRHAVRLK--PDFIDGYINLAAA--LVAAGDMEQAVQAYVTAL-QYN 649
Y+ + L + + K D ++ ++ + D L
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 650 PSCYLKAIET--RPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNV 707
K +E R ++ + + I ++ S+ YI +
Sbjct: 76 EEMVQKFVEEVLRINYK--F------------LMSPIKTEQRQPSMM---TRMYIEQRDR 118
Query: 708 L-KEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKFEQL----------- 755
L + ++F + N VS R + +L + +L
Sbjct: 119 LYNDNQVFAKYN----VS---------------RLQ-PYLKLRQALLELRPAKNVLIDGV 158
Query: 756 ---GESSLRDFTLDAPTQSVYKFEGEDYREKQKIVPIG-HWIEPPKRERKANYAVDA--- 808
G++ + V Y+ + K+ W+ K ++
Sbjct: 159 LGSGKTWV--------ALDVCL----SYKVQCKM-DFKIFWLNL-KNCNSPETVLEMLQK 204
Query: 809 -YFKEALRTSEPKAPKAPRPPKQPIVQDFQFFPPRLFE---------ILD-----QEIYY 853
++ + + K I Q RL + +L +
Sbjct: 205 LLYQ--IDPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 854 FRKTVGYKV---PKNPELGSDATKAQKEEQKKIDE-SEPLTEEELAEKEELLTQF 904
F + K+ + ++ +D A +D S LT +E+ + LL ++
Sbjct: 262 F--NLSCKILLTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEV---KSLLLKY 310
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 68.6 bits (168), Expect = 1e-13
Identities = 19/91 (20%), Positives = 34/91 (37%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111
++ K+ T A+ P SN Y GQ ++A E+ A + P +
Sbjct: 21 AMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK 80
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNPD 142
+ L A D + A +AY ++ +
Sbjct: 81 AWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111
Score = 67.8 bits (166), Expect = 3e-13
Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 11/121 (9%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
++ + GN R + +A++ Y A+ + P N AAA A+G E+A +
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAE---- 66
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
A P ++ AWS LG + A +EK + + N +
Sbjct: 67 -------DAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119
Query: 705 G 705
G
Sbjct: 120 G 120
Score = 67.1 bits (164), Expect = 4e-13
Identities = 19/90 (21%), Positives = 34/90 (37%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
++ K+ T A+ P SN Y GQ ++A E+ A + P +
Sbjct: 22 MARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKA 81
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPS 651
+ L A D + A +AY ++ +
Sbjct: 82 WSRLGLARFDMADYKGAKEAYEKGIEAEGN 111
Score = 66.7 bits (163), Expect = 6e-13
Identities = 18/76 (23%), Positives = 29/76 (38%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
T A+ P SN Y GQ ++A E+ A + P + + L A D
Sbjct: 35 TQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMAD 94
Query: 284 MEQAVQAYVTALQYNP 299
+ A +AY ++
Sbjct: 95 YKGAKEAYEKGIEAEG 110
Score = 53.6 bits (129), Expect = 2e-08
Identities = 23/92 (25%), Positives = 38/92 (41%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
++ + GN R + +A++ Y A+ + P N AAA A+G E+A +
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
A +P S LG + AK+ Y
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAY 102
Score = 50.9 bits (122), Expect = 2e-07
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687
A +A + +A+ Y +A+ P + SN ++A G+ A
Sbjct: 20 AAMARKEYSKAID-----------LYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDA 68
Query: 688 EKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
E A +DP + A+ LG + + A
Sbjct: 69 ELATVVDPKYSKAWSRLGLARFDMADYKGA 98
Score = 44.3 bits (105), Expect = 3e-05
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 18/102 (17%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
++ + GN R + +A++ Y A+ + P N AAA A+G E+A +
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 294 ALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVMMKRP 334
A +P + KA R G A M
Sbjct: 71 ATVVDP-----------KYS------KAWSRLGLARFDMADY 95
Score = 41.6 bits (98), Expect = 3e-04
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 66 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI--NLAAALVAA 123
LA +P ++A+S LG + + A E Y + + + + L
Sbjct: 69 ELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKI 128
Query: 124 GDMEQAVQA 132
+ + +
Sbjct: 129 EEANRGAEP 137
Score = 41.6 bits (98), Expect = 3e-04
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI--NLAAALVAA 281
LA +P ++A+S LG + + A E Y + + + + L
Sbjct: 69 ELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKI 128
Query: 282 GDMEQAVQA 290
+ + +
Sbjct: 129 EEANRGAEP 137
Score = 41.6 bits (98), Expect = 3e-04
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI--NLAAALVAA 632
LA +P ++A+S LG + + A E Y + + + + L
Sbjct: 69 ELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKI 128
Query: 633 GDMEQAVQA 641
+ + +
Sbjct: 129 EEANRGAEP 137
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 71.7 bits (175), Expect = 2e-13
Identities = 22/164 (13%), Positives = 46/164 (28%), Gaps = 11/164 (6%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNL--GNVYKERG---QLQEALENYRHAVRLKPDFID 620
K P +N + Y G L A E V+ P+F
Sbjct: 175 NQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTY 234
Query: 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETR--PDFAVAWSNLGCVFNAQG 678
A + + + AL + + + ++ + +G
Sbjct: 235 ARAEKALVDIVRHSQHPLDEKQLAALN---TEIDNIVTLPELNNLSIIYQIKAVSALVKG 291
Query: 679 EIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFY 722
+ + + L+ ++L Y+ LG V + + A +
Sbjct: 292 KTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYL 334
Score = 71.3 bits (174), Expect = 4e-13
Identities = 36/244 (14%), Positives = 58/244 (23%), Gaps = 54/244 (22%)
Query: 57 KLDKSAHFSTLAIKQNPLLAEAYSNL--GNVYKERG---QLQEALENYRHAVRLKPDFID 111
K P +N + Y G L A E V+ P+F
Sbjct: 175 NQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTY 234
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRS 171
A + + + AL + + L E +L +
Sbjct: 235 ARAEKALVDIVRHSQHPLDEKQLAALN-------------TEIDNIVTLPELNNLSIIYQ 281
Query: 172 DLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNP 231
G+ DE+ +T I
Sbjct: 282 IKAVSALVKGKTDESY--------------------------------QAINT-GIDLEM 308
Query: 232 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291
Y LG VY+ +G +EA + Y A L+P + + + V
Sbjct: 309 SWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPG--ANTLYWIENGIFQTSVPYVVPYL 365
Query: 292 VTAL 295
L
Sbjct: 366 DKFL 369
Score = 70.1 bits (171), Expect = 8e-13
Identities = 32/189 (16%), Positives = 62/189 (32%), Gaps = 16/189 (8%)
Query: 115 NLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLG 174
+L +L A + + T + P + L +A D + D
Sbjct: 165 DLLESLSKALNQPWPQRMQETLQKILP----------HRGALLTNFYQAHDYL-LHGDDK 213
Query: 175 NLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNY----GGRKPTTLESAHFSTLAIKQN 230
+L +A L E E K IV + ++ L + + + + +
Sbjct: 214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPEL 273
Query: 231 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA 290
L+ Y +G+ E+ + + L+ ++ Y+ L G +A A
Sbjct: 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADA 332
Query: 291 YVTALQYNP 299
Y+TA P
Sbjct: 333 YLTAFNLRP 341
Score = 66.3 bits (161), Expect = 1e-11
Identities = 23/141 (16%), Positives = 42/141 (29%), Gaps = 22/141 (15%)
Query: 577 AIKQNPLLAEAYSNLGNVYK--------ERGQLQEALENYRHAVRLKPDFIDG--YINLA 626
++ +P A + V + QL + V L Y A
Sbjct: 225 IVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKA 284
Query: 627 AALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHH 686
+ + G +++ QA T + S + + LG V+ +G A
Sbjct: 285 VSALVKGKTDESYQAINTGIDLEMS------------WLNYVLLGKVYEMKGMNREAADA 332
Query: 687 FEKAVSLDPNFLDAYINLGNV 707
+ A +L P Y +
Sbjct: 333 YLTAFNLRPGANTLYWIENGI 353
Score = 65.9 bits (160), Expect = 2e-11
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
+ + + L+ Y +G+ E+ + + L+ ++ Y+ L G
Sbjct: 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMN 326
Query: 636 EQAVQAYVTALQYNPS 651
+A AY+TA P
Sbjct: 327 REAADAYLTAFNLRPG 342
Score = 54.7 bits (131), Expect = 7e-08
Identities = 22/141 (15%), Positives = 43/141 (30%), Gaps = 8/141 (5%)
Query: 2 NDIAQLGIGLLELAHREYQAGDYESAERHCMQLWR-----QETNNTGVLLLLSSIHFQCR 56
A+ L+++ D + ++ + N + + + +
Sbjct: 232 FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG 291
Query: 57 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 116
K D+S I Y LG VY+ +G +EA + Y A L+P +
Sbjct: 292 KTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPG--ANTLYW 348
Query: 117 AAALVAAGDMEQAVQAYVTAL 137
+ + V L
Sbjct: 349 IENGIFQTSVPYVVPYLDKFL 369
Score = 52.8 bits (126), Expect = 3e-07
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Query: 565 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 624
K D+S I Y LG VY+ +G +EA + Y A L+P +
Sbjct: 291 GKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPG--ANTLY 347
Query: 625 LAAALVAAGDMEQAVQAYVTAL 646
+ + V L
Sbjct: 348 WIENGIFQTSVPYVVPYLDKFL 369
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 63.7 bits (156), Expect = 2e-12
Identities = 28/91 (30%), Positives = 42/91 (46%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111
+D + + AIK +P YSN Y ++G Q+A E+ V LKPD+
Sbjct: 14 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK 73
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNPD 142
GY AAAL E+A + Y L++ +
Sbjct: 74 GYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104
Score = 62.2 bits (152), Expect = 6e-12
Identities = 28/91 (30%), Positives = 42/91 (46%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
+D + + AIK +P YSN Y ++G Q+A E+ V LKPD+ G
Sbjct: 15 LSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKG 74
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSC 652
Y AAAL E+A + Y L++ +
Sbjct: 75 YSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105
Score = 61.4 bits (150), Expect = 1e-11
Identities = 27/76 (35%), Positives = 38/76 (50%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
+ AIK +P YSN Y ++G Q+A E+ V LKPD+ GY AAAL
Sbjct: 28 SEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 87
Query: 284 MEQAVQAYVTALQYNP 299
E+A + Y L++
Sbjct: 88 FEEAKRTYEEGLKHEA 103
Score = 55.7 bits (135), Expect = 1e-09
Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 11/123 (8%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
GN G + +AL+ Y A++L P Y N +AA GD ++A +
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYE---- 59
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
K ++ +PD+ +S A +E+ + + N L
Sbjct: 60 -------DGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112
Query: 705 GNV 707
N+
Sbjct: 113 QNM 115
Score = 46.0 bits (110), Expect = 3e-06
Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 21/122 (17%)
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687
++ G+++ A+Q CY +AI+ P V +SN + +G+ A
Sbjct: 13 KALSVGNIDDALQ-----------CYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 61
Query: 688 EKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMI-----TDEDIDVILERCE 742
K V L P++ Y L+ F+ A +Y + + L+ E
Sbjct: 62 CKTVDLKPDWGKGYSRKAAALEFLNRFEEA-----KRTYEEGLKHEANNPQLKEGLQNME 116
Query: 743 AK 744
A+
Sbjct: 117 AR 118
Score = 45.3 bits (108), Expect = 6e-06
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
GN G + +AL+ Y A++L P Y N +AA GD ++A +
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 136 ALQYNPDLY--CVRSDLGNLLKALGRLDEAKDLY 167
+ PD R L+ L R +EAK Y
Sbjct: 64 TVDLKPDWGKGYSR--KAAALEFLNRFEEAKRTY 95
Score = 38.3 bits (90), Expect = 0.001
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 18/101 (17%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
GN G + +AL+ Y A++L P Y N +AA GD ++A +
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 294 ALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVMMKR 333
+ P W K R+ AL + R
Sbjct: 64 TVDLKP------DWG-----------KGYSRKAAALEFLNR 87
Score = 36.0 bits (84), Expect = 0.011
Identities = 6/43 (13%), Positives = 15/43 (34%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 266
+ P + YS + + +EA Y ++ + +
Sbjct: 62 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 64.7 bits (158), Expect = 3e-12
Identities = 26/113 (23%), Positives = 46/113 (40%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111
+F+ + + + F + AI+ NP A Y N Y AL + A+ L +I
Sbjct: 23 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK 82
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK 164
GY AA+ +A G A++ Y T ++ P + K + + +
Sbjct: 83 GYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 135
Score = 60.1 bits (146), Expect = 1e-10
Identities = 23/77 (29%), Positives = 34/77 (44%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
+ AI+ NP A Y N Y AL + A+ L +I GY AA+ +A G
Sbjct: 37 SQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 96
Query: 635 MEQAVQAYVTALQYNPS 651
A++ Y T ++ P
Sbjct: 97 FRAALRDYETVVKVKPH 113
Score = 59.7 bits (145), Expect = 2e-10
Identities = 23/76 (30%), Positives = 34/76 (44%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
+ AI+ NP A Y N Y AL + A+ L +I GY AA+ +A G
Sbjct: 37 SQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 96
Query: 284 MEQAVQAYVTALQYNP 299
A++ Y T ++ P
Sbjct: 97 FRAALRDYETVVKVKP 112
Score = 56.2 bits (136), Expect = 2e-09
Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 11/128 (8%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
AE N Y + + A++ Y A+ L P Y N + A + A+
Sbjct: 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG---- 68
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
+AIE + + A G+ A+ +E V + P+ DA +
Sbjct: 69 -------DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 121
Query: 705 GNVLKEAR 712
K +
Sbjct: 122 QECNKIVK 129
Score = 45.1 bits (107), Expect = 2e-05
Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 11/124 (8%)
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687
A D E A++ Y +AIE P A+ + N + A+
Sbjct: 22 DYFKAKDYENAIK-----------FYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 70
Query: 688 EKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEE 747
+A+ LD ++ Y F A + D+D + + C ++
Sbjct: 71 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ 130
Query: 748 LNKK 751
+
Sbjct: 131 KAFE 134
Score = 44.7 bits (106), Expect = 2e-05
Identities = 19/92 (20%), Positives = 31/92 (33%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
AE N Y + + A++ Y A+ L P Y N + A + A+
Sbjct: 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
A++ + ALG+ A Y
Sbjct: 73 AIELDKKYIKGYYRRAASNMALGKFRAALRDY 104
Score = 40.4 bits (95), Expect = 6e-04
Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 18/102 (17%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
AE N Y + + A++ Y A+ L P Y N + A + A+
Sbjct: 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 294 ALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVMMKRP 334
A++ + ++ K +RR + + + +
Sbjct: 73 AIELDK-----------KYI------KGYYRRAASNMALGKF 97
Score = 36.2 bits (84), Expect = 0.016
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 266
T AI+ + + Y G+ + AL +Y V++KP
Sbjct: 71 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 113
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.8 bits (165), Expect = 2e-11
Identities = 119/696 (17%), Positives = 193/696 (27%), Gaps = 252/696 (36%)
Query: 90 GQLQEAL----ENYRHAVRLKPDFIDGYINLAAALVA-AGDMEQAVQAYVTA--LQY--- 139
G L+ L ++ A +L+ F L A D E A + L Y
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNK---ILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 140 --NPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHT-----E 192
P +L L E ++ Y L ++H
Sbjct: 71 LVEPS---KVGQFDQVLNLC--LTEFENCY-----LEG-----------NDIHALAAKLL 109
Query: 193 NIKPVTMKVQNAIVCNY-----GGRKPTTLESAHFSTL--AIKQNPLLAEAYSNLG---- 241
T+ ++ NY ++P + S L A+ + A+ + G
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRP--FDKKSNSALFRAVGEGN--AQLVAIFGGQGN 165
Query: 242 -NVY-KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+ Y +E L++ + Y V D I +A + + ++ + A
Sbjct: 166 TDDYFEE---LRDLYQTYHVLVG---DLIK---------FSAETLSELIRTTLDA---EK 207
Query: 300 LLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLG-LASAIES---ISANQEKCAVN 355
+ + L+ W P L S S I Q +
Sbjct: 208 VFTQ---------GLNILE----WLENP---SNTPDKDYLLSIPISCPLIGVIQ---LAH 248
Query: 356 IKIECASKDLHSGLF-----GGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDT 410
+ G G + H L+ + D+
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQ--GLV--TAVAIA----------------ETDS 288
Query: 411 EEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRW-------RYPSLSLHGIEGAFSG 463
E F+ + R AI VL + YP+ SL S
Sbjct: 289 WESFFVSV-------RKAI-----------TVLF--FIGVRCYEAYPNTSLPPSILEDSL 328
Query: 464 PGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLN-ELWKAR-------NSPNKFKAY 515
+ V P + SI N T + V+ YV + N L + N
Sbjct: 329 ENNEGV-PSPM---LSIS---NLTQEQVQDYV-NKTNSHLPAGKQVEISLVNGAKNL--- 377
Query: 516 LLDSGKSWRTNPEHP----NYVAAARATKYVYNVEPDL--TREGGSIPITLTFECRKLDK 569
++ SG P R K L +R IP F RKL
Sbjct: 378 VV-SG--------PPQSLYGLNLTLRKAK----APSGLDQSR----IP----FSERKLKF 416
Query: 570 SAHFSTLAIKQ---NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-P--DFIDGY- 622
S F L + + LL A + L + ++ +A ++ P D DG
Sbjct: 417 SNRF--LPVASPFHSHLLVPASDLI------NKDLVKNNVSF-NAKDIQIPVYDTFDGSD 467
Query: 623 -----INLAAALVAAGDMEQAVQAYV---TALQYNPSCYLKAIETRPDF---AVAWSNLG 671
+++ +V + ++ V T Q+ + L DF S LG
Sbjct: 468 LRVLSGSISERIV-----DCIIRLPVKWETTTQFKATHIL-------DFGPGGA--SGLG 513
Query: 672 CVF--NAQG----EIWLAIHHFEKAVSLDPNFLDAY 701
+ N G I A +LD N D Y
Sbjct: 514 VLTHRNKDGTGVRVI--------VAGTLDINPDDDY 541
Score = 59.7 bits (144), Expect = 5e-09
Identities = 95/552 (17%), Positives = 154/552 (27%), Gaps = 203/552 (36%)
Query: 37 QETNNTGVLLLLSSIHFQCRKL-DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 95
+ +L L F+ L H LA K LL E + L +E
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIH--ALAAK---LLQENDTTLVKT-------KEL 122
Query: 96 LENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL---QYNPDLYCVRSDLGN 152
++NY A + D N +AL A A Q A+ Q N D Y
Sbjct: 123 IKNYITARIMAKRPFDKKSN--SALFRAVGEGNA-QLV--AIFGGQGNTDDY-------- 169
Query: 153 LLKALGRLDEAKDLYCV-RSDLGNLLKALG-RLDE--AKNLHTENIKPVTMKVQNAIVCN 208
+E +DLY +G+L+K L E L E + + + +
Sbjct: 170 -------FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL--E 220
Query: 209 YGGRKPTT--LESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR---L 263
P L S S PL+ G +Q L +Y +
Sbjct: 221 NPSNTPDKDYLLSIPISC------PLI--------------GVIQ--LAHYVVTAKLLGF 258
Query: 264 KP----DFIDGYIN-----LAAALVA-AGDMEQAVQAYVTALQY---------------- 297
P ++ G + A +A E + A+
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 298 -NPLLKKEDGWNTE--P---FVLDFERRKALWRRGALVMMKRP----------------V 335
P + ++ N E P + ++ + P V
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 336 L--------GLASAIESISA----NQEKCAVNI-----KIECASKDL------HSGLFGG 372
+ GL + A +Q + I K++ +++ L HS L
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSR----IPFSERKLKFSNRFLPVASPFHSHLLVP 434
Query: 373 SVHEAMTDLIYIMGQLVEPNGKIL-IPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTA--- 428
+ DL + V N K + IP +Y DT FD D R
Sbjct: 435 ASDLINKDL---VKNNVSFNAKDIQIP-VY-------DT---------FDGSDLRVLSGS 474
Query: 429 -------------IDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVV 475
+ T+ T +L F GPGG + + G +
Sbjct: 475 ISERIVDCIIRLPVKWETTTQFKATHIL----------------DF-GPGGASGL-GVLT 516
Query: 476 GKF----SIRIV 483
+ +R++
Sbjct: 517 HRNKDGTGVRVI 528
Score = 52.0 bits (124), Expect = 1e-06
Identities = 104/661 (15%), Positives = 174/661 (26%), Gaps = 272/661 (41%)
Query: 248 GQLQEAL----ENYRHAVRLKPDFIDGYINLAAALVA-AGDMEQAVQA--------YVTA 294
G L+ L ++ A +L+ F L A D E A YV++
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNK---ILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 295 L-------QYNPLLKKEDGWNTEPFVLD-FERRKALWRRGALVMMKRPVLGLASAIESIS 346
L Q++ +L L FE + + LA+ + +
Sbjct: 71 LVEPSKVGQFDQVLN---------LCLTEFENC---------YLEGNDIHALAAKLLQEN 112
Query: 347 ANQEKCAVNIKIEC-----------ASKDLHSGLFGGSVHEAMTDLIYIM-GQLVEPNGK 394
+ I+ K +S LF +V E L+ I GQ
Sbjct: 113 DTTLVKTKEL-IKNYITARIMAKRPFDKKSNSALFR-AVGEGNAQLVAIFGGQ------- 163
Query: 395 ILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWR-YPSLS 453
G+T++ F E L ++ Y L
Sbjct: 164 -------------GNTDDYFEE--------------------------LRDLYQTYHVL- 183
Query: 454 LHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFK 513
VG I+ L+EL + K
Sbjct: 184 ---------------------VGDL-IKFSAET------------LSELIRTTLDAEKVF 209
Query: 514 AYLLDSGKSWRTNPEH-PN--YVAAARATKYVYNVEPDLTREGGSIP-ITLTFECRKLDK 569
L+ W NP + P+ Y+ + S P I + +L
Sbjct: 210 TQGLNI-LEWLENPSNTPDKDYLLSIPI----------------SCPLIGVI----QL-- 246
Query: 570 SAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 627
AH+ A P G + R L+ A H+ L + A
Sbjct: 247 -AHYVVTAKLLGFTP---------GEL---RSYLKGATG---HSQGL----------VTA 280
Query: 628 ALVA-AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLG-CVFNAQGE------ 679
+A E + A+ ++ E P+ ++ S L + N +G
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 680 -IWLAIHHFEKAVSLDPNFLDA----YINLGN-----VL-----------------KEAR 712
L + V+ + L A I+L N V+ K
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 713 IFDRANTLF------YVSSYFMIT--------DEDIDVILERCEAKTEELNKKFEQLGES 758
D++ F + + + + D+I + N K
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK------- 453
Query: 759 SLRDFTLDAPTQSVYKFE-GEDYREK-----QKIV------PIGHWIEPPKRERKANYAV 806
+ P VY G D R ++IV P+ W + KA + +
Sbjct: 454 -----DIQIP---VYDTFDGSDLRVLSGSISERIVDCIIRLPV-KWETTTQ--FKATHIL 502
Query: 807 D 807
D
Sbjct: 503 D 503
Score = 38.1 bits (88), Expect = 0.016
Identities = 38/235 (16%), Positives = 64/235 (27%), Gaps = 79/235 (33%)
Query: 17 RE-YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQN--P 73
RE Y A +E+ ++ E + +S F+ K L+ Q P
Sbjct: 1685 RENYSAMIFETIVDGKLKT---EKIFKEINEHSTSYTFRSEK-------GLLSATQFTQP 1734
Query: 74 -LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG-----YINLAAALVA-AG-- 124
L + K +G + G Y AAL + A
Sbjct: 1735 ALTLMEKAAF-EDLKSKGLIPA------------DATFAGHSLGEY----AALASLADVM 1777
Query: 125 DMEQAV-------QAYVTALQYNPDLYCVRSDLGNLLKALGRL-----DEAKDLYC--VR 170
+E V A+ P RS+ G + GR+ EA V
Sbjct: 1778 SIESLVEVVFYRGMTMQVAV---PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
Query: 171 SDLGNLL------------------KALGRLDEA-KNLHTENIK----PVTMKVQ 202
G L+ +AL + + + I ++ ++
Sbjct: 1835 KRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLE 1889
Score = 37.0 bits (85), Expect = 0.037
Identities = 50/306 (16%), Positives = 78/306 (25%), Gaps = 119/306 (38%)
Query: 506 RNSPNKFKAYL-LDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFEC 564
N+P + + GK R N + + ++ S TF
Sbjct: 1666 INNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY----TFRS 1721
Query: 565 RKLDKSAHFSTLAIKQN--P-LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
K L+ Q P L + K +G + G
Sbjct: 1722 EK-------GLLSATQFTQPALTLMEKAAF-EDLKSKGLIPA------------DATFAG 1761
Query: 622 -----YINLAAALVA-AG--DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCV 673
Y AAL + A +E V + + R
Sbjct: 1762 HSLGEY----AALASLADVMSIESLV---------------EVVFYR------------- 1789
Query: 674 FNAQGEIWLAIHHFEKAVSLDPNFLDAY----INLGNVLKEARIFDRANTLFYVSSYFMI 729
G + AV D Y IN G V
Sbjct: 1790 ----GM---TMQV---AVPRDELGRSNYGMIAINPGRVAAS------------------F 1821
Query: 730 TDEDIDVILERCEAKTEEL------NKKFEQL---GESSLRDFTLDAPTQSVYKFEGEDY 780
+ E + ++ER +T L N + +Q G+ LR LD T + ++
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD--LRA--LDTVTNVL------NF 1871
Query: 781 REKQKI 786
+ QKI
Sbjct: 1872 IKLQKI 1877
Score = 36.2 bits (83), Expect = 0.056
Identities = 35/185 (18%), Positives = 52/185 (28%), Gaps = 73/185 (39%)
Query: 39 TNNTGVLLLLSSIHFQCRKLDKSAHFSTL----AIKQNPLLA-----EAYSNL---GNVY 86
T T L L A F L I + A E Y+ L +V
Sbjct: 1729 TQFTQPALTLMEK----------AAFEDLKSKGLIPADATFAGHSLGE-YAALASLADVM 1777
Query: 87 ---------KERGQL-QEALE-------NY--------RHAVRLKPDFIDGYINLAAA-- 119
RG Q A+ NY R A + + +
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 120 ---------------LVAAGDMEQAVQAYVTALQYNPDLYCVRS-DLGNLLKALGRLDEA 163
VAAGD+ A+ L + ++ D+ L K+L L+E
Sbjct: 1838 GWLVEIVNYNVENQQYVAAGDLR-ALDTVTNVLNFIK----LQKIDIIELQKSL-SLEEV 1891
Query: 164 KD-LY 167
+ L+
Sbjct: 1892 EGHLF 1896
Score = 33.5 bits (76), Expect = 0.37
Identities = 42/288 (14%), Positives = 73/288 (25%), Gaps = 135/288 (46%)
Query: 155 KALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKP 214
K ++E Y RS+ G L + T+ T Q A+
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLL-----------SA-TQF----T---QPALT-------- 1737
Query: 215 TTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG---- 270
+E A F L K +G + G
Sbjct: 1738 -LMEKAAFEDL-------------------KSKGLIPA------------DATFAGHSLG 1765
Query: 271 -YINLAAALVA-AG--DMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG 326
Y AAL + A +E V+ ++ RG
Sbjct: 1766 EY----AALASLADVMSIESLVE----------VVFY---------------------RG 1790
Query: 327 ALVMMKRPVLGLASAIESISA-NQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIM 385
+ + P L + + A N + A + E ++ + +
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE-------------ALQYVVERVGKRT 1837
Query: 386 GQLVEP-N-----------GKILIPHIYKDVEPLGDTEEQF-YEKIDF 420
G LVE N G + + ++ + + +KID
Sbjct: 1838 GWLVEIVNYNVENQQYVAAGDL------RALDTVTNVLNFIKLQKIDI 1879
Score = 31.6 bits (71), Expect = 1.7
Identities = 90/546 (16%), Positives = 153/546 (28%), Gaps = 211/546 (38%)
Query: 451 SLSL-HG-IEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNS 508
L+L HG +E VP + + ++L +
Sbjct: 8 PLTLSHGSLEHVLL--------------------VPTAS------FF--IASQLQE---- 35
Query: 509 PNKFKAYLLDSGKSWRTNPEHPNYVA--AARATKYV-YNVEPDLTREGGSIPITLT---- 561
+F L + + + + E P A + YV VEP + G L
Sbjct: 36 --QFNKILPEPTEGFAADDE-PTTPAELVGKFLGYVSSLVEPS---KVGQFDQVLNLCLT 89
Query: 562 -FECRKL-DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 619
FE L H LA K LL E + L +E ++NY A +
Sbjct: 90 EFENCYLEGNDIH--ALAAK---LLQENDTTLVKT-------KELIKNYITARIMAKRPF 137
Query: 620 DGYINLAAALVAAGDMEQA-----------VQAYVTALQ-----YNP------------- 650
D N +AL A A Y L+ Y+
Sbjct: 138 DKKSN--SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 651 -----------SCY---------LKAIETRPDF------AVAWSNLGCVFNAQGEIWLAI 684
+ L+ PD ++ +G + Q LA
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI---Q----LA- 247
Query: 685 HHFE---KAVSLDP-NFLDAYINLGNVLKE---ARIFDRANTL--FYVSSYFMITDEDID 735
H+ K + P + A ++ F+VS IT
Sbjct: 248 -HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT----- 301
Query: 736 VIL----ERC------EAKTEELNKKFEQLGES------SLRDFTLDAPTQSVYKFEGED 779
+L RC + + + + E S+ + T + V K
Sbjct: 302 -VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 780 YREKQ----------KIVPIGHWIEPPKRERKANYAVDAYFKEALRTSEPKAP------K 823
KQ +V G PP ++ Y LR + KAP +
Sbjct: 361 PAGKQVEISLVNGAKNLVVSG----PP----QSLYG----LNLTLR--KAKAPSGLDQSR 406
Query: 824 APRPPKQPIVQDFQFFP---PRLF---------EILDQEIYYFRKTVGY-----KVP-KN 865
P ++ + +F P P F +++++++ + V + ++P +
Sbjct: 407 IPFSERKLKFSN-RFLPVASP--FHSHLLVPASDLINKDL--VKNNVSFNAKDIQIPVYD 461
Query: 866 PELGSD 871
GSD
Sbjct: 462 TFDGSD 467
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 60.7 bits (148), Expect = 3e-11
Identities = 33/104 (31%), Positives = 50/104 (48%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111
+F+ + A+K++P A YSN + + Q AL++ +RL FI
Sbjct: 23 YFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK 82
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLK 155
GYI AA LVA + +A +AY ALQ +P R + N L+
Sbjct: 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126
Score = 59.9 bits (146), Expect = 5e-11
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 11/129 (8%)
Query: 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 640
NP LA+ N GN Y ++G A+ +Y AV+ P+ Y N AA L + ++A+
Sbjct: 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALD 68
Query: 641 AYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700
I F + A E A +E A+ +DP+ +A
Sbjct: 69 -----------DCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
Query: 701 YINLGNVLK 709
+ N L+
Sbjct: 118 REGVRNCLR 126
Score = 59.9 bits (146), Expect = 6e-11
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
A+K++P A YSN + + Q AL++ +RL FI GYI AA LVA +
Sbjct: 37 NEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMRE 96
Query: 635 MEQAVQAYVTALQYNPS 651
+A +AY ALQ +PS
Sbjct: 97 WSKAQRAYEDALQVDPS 113
Score = 59.2 bits (144), Expect = 1e-10
Identities = 29/76 (38%), Positives = 41/76 (53%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
A+K++P A YSN + + Q AL++ +RL FI GYI AA LVA +
Sbjct: 37 NEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMRE 96
Query: 284 MEQAVQAYVTALQYNP 299
+A +AY ALQ +P
Sbjct: 97 WSKAQRAYEDALQVDP 112
Score = 49.9 bits (120), Expect = 2e-07
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 131
NP LA+ N GN Y ++G A+ +Y AV+ P+ Y N AA L + ++A+
Sbjct: 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALD 68
Query: 132 AYVTALQYNPDLY---CVRSDLGNLLKALGRLDEAKDLY 167
T ++ + + +R L A+ +A+ Y
Sbjct: 69 DCDTCIRLDSK-FIKGYIR--KAACLVAMREWSKAQRAY 104
Score = 44.1 bits (105), Expect = 2e-05
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687
GD A++ Y +A++ P+ A+ +SN E A+
Sbjct: 22 EYFKKGDYPTAMR-----------HYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDC 70
Query: 688 EKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+ + LD F+ YI L R + +A
Sbjct: 71 DTCIRLDSKFIKGYIRKAACLVAMREWSKA 100
Score = 43.7 bits (104), Expect = 3e-05
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 18/105 (17%)
Query: 230 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 289
NP LA+ N GN Y ++G A+ +Y AV+ P+ Y N AA L + ++A+
Sbjct: 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALD 68
Query: 290 AYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVMMKR 333
T ++ + F+ K R+ LV M+
Sbjct: 69 DCDTCIRLDS-----------KFI------KGYIRKAACLVAMRE 96
Score = 34.9 bits (81), Expect = 0.026
Identities = 6/43 (13%), Positives = 14/43 (32%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 266
I+ + + Y + +A Y A+++ P
Sbjct: 71 DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS 113
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 59.7 bits (145), Expect = 3e-11
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 81 NLGNVYKERGQLQEALENYRHAVRLKPDFID-GYINLAAALVAAGDMEQAVQAYVTALQY 139
+G ++ AL+ ++ +P D Y + A GD ++A+ Y +A++
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 140 NPDLYCVRSDLGNLLKALGRLDEAKDLY 167
NPD ++ L + KD+Y
Sbjct: 65 NPD-SPALQARKMVMDILNFYN--KDMY 89
Score = 58.1 bits (141), Expect = 1e-10
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
+ L+ GD+E A+QA LQ P A+ +G + G+
Sbjct: 3 QLKTIKELINQGDIENALQALEEFLQTEPV----------GKDEAYYLMGNAYRKLGDWQ 52
Query: 682 LAIHHFEKAVSLDPNF--LDAYINLGNVLK 709
A+++++ A+ L+P+ L A + ++L
Sbjct: 53 KALNNYQSAIELNPDSPALQARKMVMDILN 82
Score = 57.4 bits (139), Expect = 2e-10
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 15/78 (19%)
Query: 68 AIKQNPL-LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 126
++ P+ EAY +GN Y++ G Q+AL NY+ A+ L PD AL A +
Sbjct: 26 FLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS--------PALQARKMV 77
Query: 127 EQAVQAYVTALQYNPDLY 144
+ YN D+Y
Sbjct: 78 MDILNF------YNKDMY 89
Score = 57.0 bits (138), Expect = 3e-10
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 226 AIKQNPL-LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 284
++ P+ EAY +GN Y++ G Q+AL NY+ A+ L PD AL A +
Sbjct: 26 FLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS--------PALQARKMV 77
Query: 285 EQAVQAYVTALQYNPL 300
+ Y + YN L
Sbjct: 78 MDILNFYNKDM-YNQL 92
Score = 56.6 bits (137), Expect = 4e-10
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 12/81 (14%)
Query: 590 NLGNVYKERGQLQEALENYRHAVRLKPDFID-GYINLAAALVAAGDMEQAVQAYVTALQY 648
+G ++ AL+ ++ +P D Y + A GD ++A+
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALN-------- 56
Query: 649 NPSCYLKAIETRPDFAVAWSN 669
Y AIE PD +
Sbjct: 57 ---NYQSAIELNPDSPALQAR 74
Score = 56.6 bits (137), Expect = 4e-10
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 577 AIKQNPL-LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
++ P+ EAY +GN Y++ G Q+AL NY+ A+ L PD AL A +
Sbjct: 26 FLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS--------PALQARKMV 77
Query: 636 EQAVQAY 642
+ Y
Sbjct: 78 MDILNFY 84
Score = 56.6 bits (137), Expect = 4e-10
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 239 NLGNVYKERGQLQEALENYRHAVRLKPDFID-GYINLAAALVAAGDMEQAVQAYVTALQY 297
+G ++ AL+ ++ +P D Y + A GD ++A+ Y +A++
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 298 NP 299
NP
Sbjct: 65 NP 66
Score = 40.4 bits (95), Expect = 2e-04
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 113 YINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVR-SDLGNLLKALGRLDEAKDLY 167
+ L+ GD+E A+QA LQ P +GN + LG +A + Y
Sbjct: 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNY 58
Score = 37.7 bits (88), Expect = 0.002
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 677 QGEIWLAIHHFEKAVSLDPNFLD-AYINLGNVLKEARIFDRA 717
QG+I A+ E+ + +P D AY +GN ++ + +A
Sbjct: 13 QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKA 54
Score = 27.7 bits (62), Expect = 4.9
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 271 YINLAAALVAAGDMEQAVQAYVTALQYNP 299
+ L+ GD+E A+QA LQ P
Sbjct: 3 QLKTIKELINQGDIENALQALEEFLQTEP 31
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 60.4 bits (147), Expect = 4e-11
Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 11/121 (9%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
AE G Y + A++ Y ++ P+ GY N AAAL +A+
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
A++ +P+ +++ A+ A E A+ + A + D +
Sbjct: 64 AIEKDPN-FVR----------AYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR 112
Query: 705 G 705
Sbjct: 113 E 113
Score = 60.0 bits (146), Expect = 5e-11
Identities = 21/91 (23%), Positives = 36/91 (39%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111
+F + T IK+ P A YSN + EA+ + A+ P+F+
Sbjct: 14 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR 73
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNPD 142
YI A A +A + A++ A + +
Sbjct: 74 AYIRKATAQIAVKEYASALETLDAARTKDAE 104
Score = 59.2 bits (144), Expect = 9e-11
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
T IK+ P A YSN + EA+ + A+ P+F+ YI A A +A +
Sbjct: 28 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 87
Query: 635 MEQAVQAYVTALQYNPS 651
A++ A +
Sbjct: 88 YASALETLDAARTKDAE 104
Score = 58.8 bits (143), Expect = 1e-10
Identities = 20/76 (26%), Positives = 32/76 (42%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
T IK+ P A YSN + EA+ + A+ P+F+ YI A A +A +
Sbjct: 28 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 87
Query: 284 MEQAVQAYVTALQYNP 299
A++ A +
Sbjct: 88 YASALETLDAARTKDA 103
Score = 49.6 bits (119), Expect = 2e-07
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
AE G Y + A++ Y ++ P+ GY N AAAL +A+
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 136 ALQYNPDLYCVR--SDLGNLLKALGRLDEAKDLY 167
A++ +P+ VR A+ A +
Sbjct: 64 AIEKDPN--FVRAYIRKATAQIAVKEYASALETL 95
Score = 47.3 bits (113), Expect = 1e-06
Identities = 26/127 (20%), Positives = 42/127 (33%), Gaps = 16/127 (12%)
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687
D AV+ Y + I+ P+ A +SN AI
Sbjct: 13 EYFTKSDWPNAVK-----------AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 61
Query: 688 EKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEE 747
KA+ DPNF+ AYI + + A + + +D +V + ++
Sbjct: 62 NKAIEKDPNFVRAYIRKATAQIAVKEYASA-----LETLDAARTKDAEVNNGSSAREIDQ 116
Query: 748 LNKKFEQ 754
L K Q
Sbjct: 117 LYYKASQ 123
Score = 44.6 bits (106), Expect = 1e-05
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 18/101 (17%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
AE G Y + A++ Y ++ P+ GY N AAAL +A+
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 294 ALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVMMKR 333
A++ +P FV +A R+ A + +K
Sbjct: 64 AIEKDP-----------NFV------RAYIRKATAQIAVKE 87
Score = 38.8 bits (91), Expect = 0.001
Identities = 10/54 (18%), Positives = 16/54 (29%)
Query: 66 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 119
AI+++P AY + ALE A + +G
Sbjct: 62 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 115
Score = 38.8 bits (91), Expect = 0.001
Identities = 10/54 (18%), Positives = 16/54 (29%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277
AI+++P AY + ALE A + +G
Sbjct: 62 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 115
Score = 38.8 bits (91), Expect = 0.001
Identities = 10/54 (18%), Positives = 16/54 (29%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 628
AI+++P AY + ALE A + +G
Sbjct: 62 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 115
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 60.8 bits (148), Expect = 4e-11
Identities = 22/91 (24%), Positives = 39/91 (42%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111
F RK ++A AI +NPL+A Y+N Y + Q ++AL + R A+ L +
Sbjct: 19 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 78
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNPD 142
+ L + ++A+ A +
Sbjct: 79 AHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109
Score = 58.5 bits (142), Expect = 2e-10
Identities = 18/77 (23%), Positives = 32/77 (41%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
AI +NPL+A Y+N Y + Q ++AL + R A+ L + + L +
Sbjct: 33 GRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES 92
Query: 635 MEQAVQAYVTALQYNPS 651
++A+ A
Sbjct: 93 YDEAIANLQRAYSLAKE 109
Score = 58.1 bits (141), Expect = 3e-10
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
AI +NPL+A Y+N Y + Q ++AL + R A+ L + + L +
Sbjct: 33 GRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES 92
Query: 284 MEQAVQAYVTALQYNP 299
++A+ A
Sbjct: 93 YDEAIANLQRAYSLAK 108
Score = 56.6 bits (137), Expect = 1e-09
Identities = 25/120 (20%), Positives = 36/120 (30%), Gaps = 11/120 (9%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A+ GN + EA Y A+ P Y N A + E
Sbjct: 1 GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE 60
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
QA+ AL+ + +K A LG AI + ++A SL
Sbjct: 61 QALADCRRALELDGQ-SVK----------AHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109
Score = 48.9 bits (117), Expect = 5e-07
Identities = 21/100 (21%), Positives = 29/100 (29%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A+ GN + EA Y A+ P Y N A + E
Sbjct: 1 GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE 60
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
QA+ AL+ + LG + DEA
Sbjct: 61 QALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANL 100
Score = 42.3 bits (100), Expect = 9e-05
Identities = 21/110 (19%), Positives = 31/110 (28%), Gaps = 18/110 (16%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
A+ GN + EA Y A+ P Y N A + E
Sbjct: 1 GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE 60
Query: 286 QAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVMMKRP 334
QA+ AL+ + V KA + G + M+
Sbjct: 61 QALADCRRALELDG-----------QSV------KAHFFLGQCQLEMESY 93
Score = 41.9 bits (99), Expect = 1e-04
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 11/90 (12%)
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687
L +A CY +AI P AV ++N + + A+
Sbjct: 18 RLFVGRKYPEAAA-----------CYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 66
Query: 688 EKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+A+ LD + A+ LG E +D A
Sbjct: 67 RRALELDGQSVKAHFFLGQCQLEMESYDEA 96
Score = 36.5 bits (85), Expect = 0.011
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 266
A++ + +A+ LG E EA+ N + A L +
Sbjct: 67 RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 61.6 bits (149), Expect = 2e-10
Identities = 33/237 (13%), Positives = 69/237 (29%), Gaps = 56/237 (23%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQA 129
A+ +Y+ R +L A +++ A + + + Y+ + G+ A
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNL 189
V + A+Q N LG + E +DL + KA+ + A
Sbjct: 97 VDSLENAIQIFTHRGQ-FRRGANFKFELGEILE--------NDLHDYAKAIDCYELAGEW 147
Query: 190 HTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 249
+ + + L + + ++ GQ
Sbjct: 148 YAQ----------------------------------DQSVALSNKCFIKCADLKALDGQ 173
Query: 250 LQEALENYRHAVR-------LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
EA + Y ++ + D ++ +AA D A + +P
Sbjct: 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230
Score = 51.9 bits (124), Expect = 4e-07
Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 18/150 (12%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQA 638
A+ +Y+ R +L A +++ A + + + Y+ + G+ A
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96
Query: 639 VQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVF-NAQGEIWLAIHHFEKAVSL---- 693
V + A+Q A LG + N + AI +E A
Sbjct: 97 VDSLENAIQ-----IFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151
Query: 694 --DPNFLDAYINLGNVLKEARIFDRANTLF 721
+I ++ + A+ ++
Sbjct: 152 QSVALSNKCFIKCADLKALDGQYIEASDIY 181
Score = 48.9 bits (116), Expect = 3e-06
Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 11/123 (8%)
Query: 585 AEAYSNLGNVY-KERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQ 637
A LG + + +A++ Y A +I A G +
Sbjct: 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176
Query: 638 AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697
A Y ++ + L ++ + G A + A ++ S DPNF
Sbjct: 177 ASDIYSKLIKSSMGNRL----SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232
Query: 698 LDA 700
D+
Sbjct: 233 ADS 235
Score = 47.7 bits (113), Expect = 9e-06
Identities = 15/134 (11%), Positives = 39/134 (29%), Gaps = 12/134 (8%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF------IDGYINLAAALVA-AGDMEQ 637
Y +K G A+++ +A+++ + L L D +
Sbjct: 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAK 136
Query: 638 AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697
A+ Y A ++ ++ + + G+ A + K +
Sbjct: 137 AIDCYELAGEW-----YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191
Query: 698 LDAYINLGNVLKEA 711
+ +L + +
Sbjct: 192 RLSQWSLKDYFLKK 205
Score = 38.5 bits (89), Expect = 0.007
Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 9/103 (8%)
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR-------LKPDFIDGYINLAAALVAA 123
L + + ++ GQ EA + Y ++ + D ++ +AA
Sbjct: 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAA 212
Query: 124 GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDL 166
D A + +P+ S N LK+L D
Sbjct: 213 TDAVAAARTLQEGQSEDPN--FADSRESNFLKSLIDAVNEGDS 253
Score = 37.7 bits (87), Expect = 0.011
Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 7/80 (8%)
Query: 580 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR-------LKPDFIDGYINLAAALVAA 632
L + + ++ GQ EA + Y ++ + D ++ +AA
Sbjct: 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAA 212
Query: 633 GDMEQAVQAYVTALQYNPSC 652
D A + +P+
Sbjct: 213 TDAVAAARTLQEGQSEDPNF 232
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 58.0 bits (139), Expect = 5e-10
Identities = 27/153 (17%), Positives = 47/153 (30%), Gaps = 22/153 (14%)
Query: 577 AIKQNPLLAEAYSNL--GNVYKERGQLQEALENYRHAVRLKPDFIDG------------Y 622
+K + AY L G+ EA N R A+ + +
Sbjct: 1 GMKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCH 60
Query: 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWS----NLGCVFNAQG 678
LA AL ++A+ + AL Y + + E D W + + G
Sbjct: 61 AGLAEALAGLRSFDEALHSADKALHY----FNRRGELNQDEGKLWISAVYSRALALDGLG 116
Query: 679 EIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEA 711
A+ F+K V + +++ A
Sbjct: 117 RGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149
Score = 49.9 bits (118), Expect = 3e-07
Identities = 29/133 (21%), Positives = 40/133 (30%), Gaps = 26/133 (19%)
Query: 68 AIKQNPLLAEAYSNL--GNVYKERGQLQEALENYRHAVRLKPDFIDG------------Y 113
+K + AY L G+ EA N R A+ + +
Sbjct: 1 GMKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCH 60
Query: 114 INLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDL 173
LA AL ++A+ + AL Y R +L DE K
Sbjct: 61 AGLAEALAGLRSFDEALHSADKALHYFNR----RGELNQ--------DEGKLWISAVYSR 108
Query: 174 GNLLKALGRLDEA 186
L LGR EA
Sbjct: 109 ALALDGLGRGAEA 121
Score = 41.8 bits (97), Expect = 2e-04
Identities = 24/141 (17%), Positives = 47/141 (33%), Gaps = 21/141 (14%)
Query: 226 AIKQNPLLAEAYSNL--GNVYKERGQLQEALENYRHAVRLKPDFIDG------------Y 271
+K + AY L G+ EA N R A+ + +
Sbjct: 1 GMKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCH 60
Query: 272 INLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVM 330
LA AL ++A+ + AL Y + + + ++ A++ R AL
Sbjct: 61 AGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWI------SAVYSRALALDG 114
Query: 331 MKRPVLGLASAIESISANQEK 351
+ R + + + +E+
Sbjct: 115 LGRGAEAMPEFKKVVEMIEER 135
Score = 33.3 bits (75), Expect = 0.18
Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 23/144 (15%)
Query: 12 LELAHREYQAGDYESAE---RHCMQL---------WRQETNNTGVLLLLSSIHFQCRKLD 59
L A R+ AG+Y+ A R M++ + + L+ R D
Sbjct: 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFD 74
Query: 60 KSAHFSTLAIKQNPLLAE-----------AYSNLGNVYKERGQLQEALENYRHAVRLKPD 108
++ H + A+ E A + G+ EA+ ++ V + +
Sbjct: 75 EALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134
Query: 109 FIDGYINLAAALVAAGDMEQAVQA 132
+ A D + A
Sbjct: 135 RKGETPGKERMMEVAIDRIAQLGA 158
Score = 30.6 bits (68), Expect = 1.4
Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Query: 568 DKSAHFSTLAIKQNPLLAEAYS----NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623
DK+ H+ + N + + + G+ EA+ ++ V + +
Sbjct: 81 DKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP 140
Query: 624 NLAAALVAAGDMEQAVQA 641
+ A D + A
Sbjct: 141 GKERMMEVAIDRIAQLGA 158
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 59.9 bits (145), Expect = 7e-10
Identities = 22/91 (24%), Positives = 39/91 (42%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111
F RK ++A AI +NPL+A Y+N Y + Q ++AL + R A+ L +
Sbjct: 14 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 73
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNPD 142
+ L + ++A+ A +
Sbjct: 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104
Score = 58.0 bits (140), Expect = 3e-09
Identities = 19/86 (22%), Positives = 34/86 (39%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
AI +NPL+A Y+N Y + Q ++AL + R A+ L + + L +
Sbjct: 28 GRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES 87
Query: 635 MEQAVQAYVTALQYNPSCYLKAIETR 660
++A+ A L +
Sbjct: 88 YDEAIANLQRAYSLAKEQRLNFGDDI 113
Score = 57.6 bits (139), Expect = 5e-09
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
AI +NPL+A Y+N Y + Q ++AL + R A+ L + + L +
Sbjct: 28 GRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES 87
Query: 284 MEQAVQAYVTALQYNP 299
++A+ A
Sbjct: 88 YDEAIANLQRAYSLAK 103
Score = 51.8 bits (124), Expect = 4e-07
Identities = 36/216 (16%), Positives = 63/216 (29%), Gaps = 25/216 (11%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
A+ GN + EA Y A+ P Y N A + EQA+
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYI-- 702
AL+ + +K A LG AI + ++A SL +
Sbjct: 64 ALELDGQ-SVK----------AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD 112
Query: 703 ----------NLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKF 752
N ++E RI + Y++ E + E +
Sbjct: 113 IPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIA--AERERELEECQRNHEGHEDDGH 170
Query: 753 EQLGESSLRDFTLDAPTQSVYKFEGEDYREKQKIVP 788
+ ++ + F D + K++ +P
Sbjct: 171 IRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIP 206
Score = 48.8 bits (116), Expect = 3e-06
Identities = 36/205 (17%), Positives = 58/205 (28%), Gaps = 16/205 (7%)
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687
L +A CY +AI P AV ++N + + A+
Sbjct: 13 RLFVGRKYPEAAA-----------CYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61
Query: 688 EKAVSLDPNFLDAYINLGNVLKEARIFDRA-----NTLFYVSSYFMITDEDIDVILERCE 742
+A+ LD + A+ LG E +D A + +DI L +
Sbjct: 62 RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 121
Query: 743 AKTEELNKKFEQLGESSLRDFTLDAPTQSVYKFEGEDYREKQKIVPIGHWIEPPKRERKA 802
K ++ ES L + + E R + GH
Sbjct: 122 KKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAK 181
Query: 803 NYAVDAYFKEALRTSEPKAPKAPRP 827
+ A E + K K P
Sbjct: 182 HDKYMADMDELFSQVDEKRKKRDIP 206
Score = 46.8 bits (111), Expect = 2e-05
Identities = 21/92 (22%), Positives = 29/92 (31%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
A+ GN + EA Y A+ P Y N A + EQA+
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
AL+ + LG + DEA
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANL 95
Score = 40.7 bits (95), Expect = 0.001
Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 18/102 (17%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
A+ GN + EA Y A+ P Y N A + EQA+
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 294 ALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVMMKRP 334
AL+ + V KA + G + M+
Sbjct: 64 ALELDG-----------QSV------KAHFFLGQCQLEMESY 88
Score = 34.5 bits (79), Expect = 0.11
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 266
A++ + +A+ LG E EA+ N + A L +
Sbjct: 62 RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 54.6 bits (132), Expect = 2e-09
Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 12/117 (10%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
E GN ++G +EA+ Y + +P GY N A AL+ G+ QA+Q
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQ---- 59
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAY 701
+ + + A+ + V + Y
Sbjct: 60 -------MCQQGLRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVVEVDELPEGY 108
Score = 53.9 bits (130), Expect = 5e-09
Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 10/118 (8%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
E GN ++G +EA+ Y + +P GY N A AL+ G+ QA+Q
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTEN 193
L+Y R L + +G++ + +DE + +
Sbjct: 64 GLRYTS----------TAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYDRS 111
Score = 50.4 bits (121), Expect = 7e-08
Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 17/117 (14%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
E GN ++G +EA+ Y + +P GY N A AL+ G+ QA+Q
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
Query: 294 ALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQE 350
L+Y + R ++ + S + E
Sbjct: 64 GLRYTSTAE-----------------HVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103
Score = 50.0 bits (120), Expect = 1e-07
Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 1/87 (1%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111
F+ ++ H I P YSN + G+ +A++ + +R
Sbjct: 14 LFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH 73
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQ 138
I + AV + +
Sbjct: 74 VAIRSKLQY-RLELAQGAVGSVQIPVV 99
Score = 49.2 bits (118), Expect = 2e-07
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 2/81 (2%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
I P YSN + G+ +A++ + +R I
Sbjct: 28 DQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY-RLEL 86
Query: 284 MEQAVQAYVTALQ-YNPLLKK 303
+ AV + + + L +
Sbjct: 87 AQGAVGSVQIPVVEVDELPEG 107
Score = 48.1 bits (115), Expect = 5e-07
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 1/73 (1%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
I P YSN + G+ +A++ + +R I
Sbjct: 28 DQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY-RLEL 86
Query: 635 MEQAVQAYVTALQ 647
+ AV + +
Sbjct: 87 AQGAVGSVQIPVV 99
Score = 43.1 bits (102), Expect = 3e-05
Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 11/85 (12%)
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687
+L G +AV CY + I +P V +SN GE AI
Sbjct: 13 SLFKQGLYREAVH-----------CYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61
Query: 688 EKAVSLDPNFLDAYINLGNVLKEAR 712
++ + I +
Sbjct: 62 QQGLRYTSTAEHVAIRSKLQYRLEL 86
Score = 28.4 bits (64), Expect = 3.7
Identities = 6/48 (12%), Positives = 14/48 (29%), Gaps = 1/48 (2%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 271
++ Y+ Q A+ + + V + +GY
Sbjct: 62 QQGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGY 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 55.7 bits (134), Expect = 5e-09
Identities = 28/184 (15%), Positives = 56/184 (30%), Gaps = 24/184 (13%)
Query: 110 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCV 169
+ + + L+ G+ QA+ T V+ + L + + A++L
Sbjct: 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQEL--- 62
Query: 170 RSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ 229
L + + K + K++ ++ +
Sbjct: 63 ----------LATIPLE--YQDNSYKSLIAKLELH-------QQAAESPELKRLEQELAA 103
Query: 230 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI--NLAAALVAAGDMEQA 287
NP E L Y + G+ +EALE + +++ DG + L A G
Sbjct: 104 NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163
Query: 288 VQAY 291
Y
Sbjct: 164 ASKY 167
Score = 50.4 bits (120), Expect = 4e-07
Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 4/169 (2%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
LL+ Q G++ A L + + V L + + ++ + +
Sbjct: 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL 68
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
+ + ++ L+ + PD + LA G E+A+
Sbjct: 69 EYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEAL 128
Query: 131 QAYVTALQYNPDL--YCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLL 177
+ L+ N V+ ++L ALG+ + Y R L ++L
Sbjct: 129 ELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY--RRQLYSIL 175
Score = 48.4 bits (115), Expect = 1e-06
Identities = 18/141 (12%), Positives = 40/141 (28%), Gaps = 11/141 (7%)
Query: 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 640
N E + ++G+ +AL + D + A L+ E A +
Sbjct: 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQE 61
Query: 641 AYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700
T K++ + + Q + E+ ++ +P+ +
Sbjct: 62 LLATIPLEYQDNSYKSLIAKLELH-----------QQAAESPELKRLEQELAANPDNFEL 110
Query: 701 YINLGNVLKEARIFDRANTLF 721
L + + A L
Sbjct: 111 ACELAVQYNQVGRDEEALELL 131
Score = 45.7 bits (108), Expect = 1e-05
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 11/135 (8%)
Query: 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 131
N E + ++G+ +AL + D + A L+ E A +
Sbjct: 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQE 61
Query: 132 AY-----------VTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKAL 180
+L +L+ ++ L + L D + + +L +
Sbjct: 62 LLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQV 121
Query: 181 GRLDEAKNLHTENIK 195
GR +EA L +K
Sbjct: 122 GRDEEALELLWNILK 136
Score = 41.1 bits (96), Expect = 5e-04
Identities = 10/62 (16%), Positives = 19/62 (30%)
Query: 230 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 289
N E + ++G+ +AL + D + A L+ E A +
Sbjct: 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQE 61
Query: 290 AY 291
Sbjct: 62 LL 63
Score = 40.0 bits (93), Expect = 0.001
Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 13/132 (9%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
+ + + E Q + A E D + L
Sbjct: 32 LSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAES 91
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY-------------CVRSDLG 174
++ L NPD + + +L +GR +EA +L V+
Sbjct: 92 PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFM 151
Query: 175 NLLKALGRLDEA 186
++L ALG+ +
Sbjct: 152 DILSALGQGNAI 163
Score = 33.8 bits (77), Expect = 0.12
Identities = 13/123 (10%), Positives = 27/123 (21%), Gaps = 11/123 (8%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
+ + + E Q + A E D + L
Sbjct: 32 LSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAES 91
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
++ + + PD L +N G A+ + ++
Sbjct: 92 PELK-----------RLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG 140
Query: 697 FLD 699
D
Sbjct: 141 AQD 143
Score = 31.5 bits (71), Expect = 0.66
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 268 IDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+ + + L+ G+ QA+ T
Sbjct: 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQ 37
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR,
tetratricopeptide repeat like, TPR-like, transport
protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 53.2 bits (127), Expect = 3e-08
Identities = 15/121 (12%), Positives = 36/121 (29%), Gaps = 12/121 (9%)
Query: 587 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 646
+ + ++ ++ + + P D L+ A +
Sbjct: 4 GSMDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQM-I 62
Query: 647 QYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW-----------LAIHHFEKAVSLDP 695
Q + + +A+ P A +G + + + LA F++AV P
Sbjct: 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122
Query: 696 N 696
+
Sbjct: 123 D 123
Score = 47.8 bits (113), Expect = 2e-06
Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 18/114 (15%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQ----------LQEALENYRHAVRLKPDFIDGYINLA 626
K NPL A+ + G V E Q +QEA+ + A+ + P + +
Sbjct: 28 TYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG 87
Query: 627 AALVAAG----DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNA 676
A + D +A + A Q + +A++ +PD +L A
Sbjct: 88 NAYTSFAFLTPDETEAKHNFDLATQ----FFQQAVDEQPDNTHYLKSLEMTAKA 137
Score = 45.5 bits (107), Expect = 1e-05
Identities = 20/140 (14%), Positives = 39/140 (27%), Gaps = 25/140 (17%)
Query: 78 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM----------E 127
+ + ++ ++ + + P D L+ +
Sbjct: 4 GSMDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQ 63
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRL-----------DEAKDLY--CVRSDLG 174
+A+ + AL +P +GN + L D A + V
Sbjct: 64 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123
Query: 175 NLL--KALGRLDEAKNLHTE 192
N K+L +A LH E
Sbjct: 124 NTHYLKSLEMTAKAPQLHAE 143
Score = 44.4 bits (104), Expect = 3e-05
Identities = 26/123 (21%), Positives = 42/123 (34%), Gaps = 32/123 (26%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQ----------LQEALENYRHAVRLKPDFIDGYINLA 117
K NPL A+ + G V E Q +QEA+ + A+ + P + +
Sbjct: 28 TYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG 87
Query: 118 AAL-----------VAAGDMEQAVQAYVTALQYNP--DLYCVRSDLGNLLKALGRLDEAK 164
A A + + A Q + A+ P Y LK+L +A
Sbjct: 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY---------LKSLEMTAKAP 138
Query: 165 DLY 167
L+
Sbjct: 139 QLH 141
Score = 42.8 bits (100), Expect = 1e-04
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 21/95 (22%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQ----------LQEALENYRHAVRLKPDFIDGYINLA 275
K NPL A+ + G V E Q +QEA+ + A+ + P + +
Sbjct: 28 TYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG 87
Query: 276 AAL-----------VAAGDMEQAVQAYVTALQYNP 299
A A + + A Q + A+ P
Sbjct: 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122
Score = 40.1 bits (93), Expect = 8e-04
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 653 YLKAIETRPDFAVAWSNLGCVF----------NAQGEIWLAIHHFEKAVSLDPNFLDAYI 702
++ P A + G V +A+ I AI FE+A+ +DP +A
Sbjct: 25 AENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW 84
Query: 703 NLGNVL 708
+GN
Sbjct: 85 CIGNAY 90
Score = 35.5 bits (81), Expect = 0.024
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQL-----------QEALENYRHAVRLKPD 266
A+ +P EA +GN Y L A + ++ AV +PD
Sbjct: 72 ALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123
Score = 28.2 bits (62), Expect = 7.5
Identities = 7/28 (25%), Positives = 8/28 (28%)
Query: 683 AIHHFEKAVSLDPNFLDAYINLGNVLKE 710
E +P D G VL E
Sbjct: 21 IRQDAENTYKSNPLDADNLTRWGGVLLE 48
>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase,
metal-bindin metalloprotease, protease; 2.30A
{Staphylococcus aureus} PDB: 3ki9_A 3khz_A
Length = 492
Score = 56.2 bits (135), Expect = 3e-08
Identities = 35/335 (10%), Positives = 75/335 (22%), Gaps = 94/335 (28%)
Query: 305 DGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKI------ 358
DGW++ PF A+ RG L K P + AI+ + I +
Sbjct: 115 DGWDSNPFEP-VVTEDAIIARGTLD-DKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDE 172
Query: 359 ECASKDL-------------------------HSGLFGGSV--HEAMTDLIYIMGQLVEP 391
E K G+ + ++ D +L+
Sbjct: 173 ESDWKCTDRYFKTEEMPTLGFAPDAEFPCIHGEKGITTFDLVQNKLTEDQDEPDYELITF 232
Query: 392 NGKI---LIPHIYKDVEPLGDTEEQFYEKIDFDTE------------------------- 423
++P + + + + ++ E
Sbjct: 233 KSGERYNMVPDHAEARVLVKENMTDVIQDFEYFLEQNHLQGDSTVDSGILVLTVEGKAVH 292
Query: 424 ---------------DFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKT 468
F +++ +A + G++ G T
Sbjct: 293 GMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLFNSDFGEKMGMKFHTDVMGDVT 352
Query: 469 VIPGKV--------VGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSG 520
G + + ++R + + + + F+ L
Sbjct: 353 TNIGVITYDNENAGLFGINLRYPEGFEFEKAMDRFANEIQQ--------YGFEVKLGKVQ 404
Query: 521 KSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGS 555
+ P A + N + GG
Sbjct: 405 PPHYVDKNDPFVQKLVTAYRNQTNDMTEPYTIGGG 439
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide
repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo
sapiens} SCOP: a.118.8.1
Length = 497
Score = 53.4 bits (127), Expect = 2e-07
Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 14/159 (8%)
Query: 542 VYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 601
V+NV+ + + I + S+ + +LG++ + R Q
Sbjct: 112 VFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---ICQHCLVHLGDIARYRNQT 168
Query: 602 QEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP 661
+A YRHA +L P Y LA + GD + Y ++I +
Sbjct: 169 SQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIF-----------YYCRSIAVKF 217
Query: 662 DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700
F A +NL + E + F+
Sbjct: 218 PFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKF 256
Score = 44.6 bits (104), Expect = 1e-04
Identities = 29/184 (15%), Positives = 56/184 (30%), Gaps = 19/184 (10%)
Query: 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEA---YSNLGNVYKERGQ 600
VE DL IT K + + S + + L A Y+ L
Sbjct: 55 KVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN 114
Query: 601 LQEALENYRHAVRLKPDFIDG------------YINLAAALVAAGDMEQAVQAYVTALQY 648
+ + + + LV GD+ + A
Sbjct: 115 VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAES- 173
Query: 649 NPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708
Y A + P ++ L + +++G+ I ++ +++++ F A NL L
Sbjct: 174 ---YYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230
Query: 709 KEAR 712
+A
Sbjct: 231 SKAL 234
Score = 43.0 bits (100), Expect = 4e-04
Identities = 39/182 (21%), Positives = 66/182 (36%), Gaps = 8/182 (4%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
LE A Y E + L + ++ ++ H +S+ S +
Sbjct: 94 FLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-- 151
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
+LG++ + R Q +A YRHA +L P Y LA + GD +
Sbjct: 152 -----QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI 206
Query: 131 QAYVTALQYNPDLYCVRSDLGNLL-KALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNL 189
Y ++ ++L L KAL DE K + V + +K G + +K+L
Sbjct: 207 FYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSL 266
Query: 190 HT 191
Sbjct: 267 EK 268
Score = 38.4 bits (88), Expect = 0.010
Identities = 17/68 (25%), Positives = 28/68 (41%)
Query: 232 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291
+ +LG++ + R Q +A YRHA +L P Y LA + GD + Y
Sbjct: 150 ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYY 209
Query: 292 VTALQYNP 299
++
Sbjct: 210 CRSIAVKF 217
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 50.0 bits (120), Expect = 2e-07
Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 3/109 (2%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNP---LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 108
F+C + T A+ + A + N + + +A A+
Sbjct: 38 LFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97
Query: 109 FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL 157
+ + AL G ++QAV + P + L N+
Sbjct: 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146
Score = 48.5 bits (116), Expect = 9e-07
Identities = 26/135 (19%), Positives = 43/135 (31%), Gaps = 14/135 (10%)
Query: 580 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG---YINLAAALVAAGDME 636
E GN + G AL Y A+ L D + N AA + D +
Sbjct: 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYD 82
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+A A++ + +KA G + A+ ++ VSL+P
Sbjct: 83 KAETEASKAIEKDGG-DVKA----------LYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131
Query: 697 FLDAYINLGNVLKEA 711
L N+ +
Sbjct: 132 NKVFQEALRNISGPS 146
Score = 48.1 bits (115), Expect = 1e-06
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 3/80 (3%)
Query: 575 TLAIKQNP---LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 631
T A+ + A + N + + +A A+ + + AL
Sbjct: 52 TQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK 111
Query: 632 AGDMEQAVQAYVTALQYNPS 651
G ++QAV + P
Sbjct: 112 LGRLDQAVLDLQRCVSLEPK 131
Score = 47.4 bits (113), Expect = 2e-06
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 3/79 (3%)
Query: 224 TLAIKQNP---LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 280
T A+ + A + N + + +A A+ + + AL
Sbjct: 52 TQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK 111
Query: 281 AGDMEQAVQAYVTALQYNP 299
G ++QAV + P
Sbjct: 112 LGRLDQAVLDLQRCVSLEP 130
Score = 42.3 bits (100), Expect = 1e-04
Identities = 27/121 (22%), Positives = 39/121 (32%), Gaps = 26/121 (21%)
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG---YINLAAALVAAGDME 127
E GN + G AL Y A+ L D + N AA + D +
Sbjct: 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYD 82
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAK 187
+A A++ + +KAL R L+ LGRLD+A
Sbjct: 83 KAETEASKAIEKDG----------GDVKALYR-------------RSQALEKLGRLDQAV 119
Query: 188 N 188
Sbjct: 120 L 120
Score = 39.6 bits (93), Expect = 0.001
Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 8/90 (8%)
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687
L GD A+ AY AL + T D AV N + A
Sbjct: 37 ELFKCGDYGGALAAYTQALGLDA--------TPQDQAVLHRNRAACHLKLEDYDKAETEA 88
Query: 688 EKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
KA+ D + A L++ D+A
Sbjct: 89 SKAIEKDGGDVKALYRRSQALEKLGRLDQA 118
Score = 37.3 bits (87), Expect = 0.005
Identities = 25/109 (22%), Positives = 36/109 (33%), Gaps = 21/109 (19%)
Query: 229 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG---YINLAAALVAAGDME 285
E GN + G AL Y A+ L D + N AA + D +
Sbjct: 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYD 82
Query: 286 QAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVMMKR 333
+A A++ + V KAL+RR AL + R
Sbjct: 83 KAETEASKAIEKDG-----------GDV------KALYRRSQALEKLGR 114
Score = 33.5 bits (77), Expect = 0.11
Identities = 9/43 (20%), Positives = 22/43 (51%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 266
+ AI+++ +A ++ G+L +A+ + + V L+P
Sbjct: 89 SKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR
domain, ATPase, protein secret protein transport; 2.00A
{Mycobacterium tuberculosis}
Length = 282
Score = 49.7 bits (118), Expect = 2e-06
Identities = 31/227 (13%), Positives = 57/227 (25%), Gaps = 22/227 (9%)
Query: 90 GQLQEALENYRHAVRLKPDFIDGYINLAAA-------LVAAGDMEQAVQAYVTALQYNPD 142
+L+ + D +I L A + ++Q +
Sbjct: 20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMS 79
Query: 143 LYCVRSDLGNLLKALG-RLDEAKDLYC----VRSDLGNLLKALGRLDEAKNLHTENIKPV 197
R +G L + + + + GN A+ L+ A +E++
Sbjct: 80 TLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAW 139
Query: 198 TMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLL-AEAYSNLGNVYKERGQLQEALEN 256
A+V R + + + L A G EA
Sbjct: 140 MK----AVVYGAAERWTDVI--DQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERR 193
Query: 257 YRHAV---RLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPL 300
A + LA A + G+ AV +P
Sbjct: 194 LTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240
Score = 47.8 bits (113), Expect = 8e-06
Identities = 24/215 (11%), Positives = 50/215 (23%), Gaps = 52/215 (24%)
Query: 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI----------DGYINLAAALVAAG 124
L A+ + N + G +Q ++ + + + + AA A G
Sbjct: 57 LFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQG 116
Query: 125 DMEQAVQAYVTALQYNPD---------LYCVRSDLGNLLKALGRLDEAKDLYC---VRSD 172
+ A++A A + +Y +++ + + D +
Sbjct: 117 NYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA 176
Query: 173 LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL 232
G L EA+ TE
Sbjct: 177 HGVAAANLALFTEAERRLTEANDSPAG------------------------------EAC 206
Query: 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 267
L + +G A+ P+
Sbjct: 207 ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEP 241
Score = 32.8 bits (74), Expect = 0.42
Identities = 14/111 (12%), Positives = 28/111 (25%), Gaps = 10/111 (9%)
Query: 592 GNVYKERGQLQEALENYRHAVRLKPDFID--GYINLAAALVAAGDMEQAVQAYVTALQYN 649
VY + + ++ + A + F+ + A +A + A
Sbjct: 142 AVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAN--- 198
Query: 650 PSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700
+ L +QG A+ E + P A
Sbjct: 199 -----DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVA 244
Score = 32.4 bits (73), Expect = 0.58
Identities = 25/150 (16%), Positives = 43/150 (28%), Gaps = 24/150 (16%)
Query: 584 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI----------DGYINLAAALVAAG 633
L A+ + N + G +Q ++ + + + + AA A G
Sbjct: 57 LFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQG 116
Query: 634 DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693
+ A++A A + VAW V+ A I + A
Sbjct: 117 NYADAMEALEAAP-----------VAGSEHLVAW-MKAVVYGAAERWTDVIDQVKSAGKW 164
Query: 694 DPNFLD--AYINLGNVLKEARIFDRANTLF 721
FL A + G +F A
Sbjct: 165 PDKFLAGAAGVAHGVAAANLALFTEAERRL 194
Score = 29.7 bits (66), Expect = 4.6
Identities = 9/100 (9%), Positives = 18/100 (18%), Gaps = 5/100 (5%)
Query: 15 AHREYQAGDYESAERHCMQL--WRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ- 71
A A + W + + ++ T A
Sbjct: 142 AVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP 201
Query: 72 --NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 109
L + +G A+ P+
Sbjct: 202 AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEP 241
Score = 29.3 bits (65), Expect = 5.7
Identities = 4/38 (10%), Positives = 8/38 (21%)
Query: 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 618
L + +G A+ P+
Sbjct: 204 EACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEP 241
Score = 28.9 bits (64), Expect = 6.3
Identities = 7/109 (6%), Positives = 20/109 (18%), Gaps = 18/109 (16%)
Query: 599 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIE 658
+L+ + D +I +++
Sbjct: 20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNF----GQLSGSVQ 75
Query: 659 TRPDFAVAWSNLGCVFN--------------AQGEIWLAIHHFEKAVSL 693
A +G ++ A ++ A+
Sbjct: 76 ISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEA 124
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.40A {Vibrio
parahaemolyticus} SCOP: e.61.1.1
Length = 273
Score = 49.6 bits (118), Expect = 2e-06
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 88 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVR 147
GQLQ+ALE A++ P + L GD E+A + + +++ P+
Sbjct: 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68
Query: 148 SDLGNLLKA 156
S L +L+KA
Sbjct: 69 SQLRHLVKA 77
Score = 45.7 bits (108), Expect = 4e-05
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 597 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS 651
GQLQ+ALE A++ P + L GD E+A + + +++ P
Sbjct: 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63
Score = 45.3 bits (107), Expect = 4e-05
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 246 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
GQLQ+ALE A++ P + L GD E+A + + +++ P
Sbjct: 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62
Score = 41.9 bits (98), Expect = 6e-04
Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 1/101 (0%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
AIK +P A S+ + G + A E +++L P+++ G L + AA +
Sbjct: 23 AIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK 82
Query: 128 QAVQAYVTA-LQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
Q TA + + NL ++ +L
Sbjct: 83 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 123
Score = 41.5 bits (97), Expect = 8e-04
Identities = 19/120 (15%), Positives = 36/120 (30%), Gaps = 10/120 (8%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
AIK +P A S+ + G + A E +++L P+++ G L + AA +
Sbjct: 23 AIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK 82
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
Q TA + + + + + L
Sbjct: 83 DFAQGAATA----------KVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132
Score = 40.3 bits (94), Expect = 0.002
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
AIK +P A S+ + G + A E +++L P+++ G L + A
Sbjct: 23 AIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----A 78
Query: 286 QAVQAYVTALQYNPLLKKEDGWNT 309
QA + + +L + +
Sbjct: 79 QARKDFAQGAATAKVLGENEELTK 102
Score = 33.8 bits (77), Expect = 0.18
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 114 INLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEA 163
+ ++ G ++QA++ + A++ +P +RS LL G + A
Sbjct: 1 MTQWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERA 50
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 47.8 bits (114), Expect = 1e-05
Identities = 26/110 (23%), Positives = 45/110 (40%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111
+F+ + + + F + AI+ NP A Y N Y AL + A+ L +I
Sbjct: 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK 75
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLD 161
GY AA+ +A G A++ Y T ++ P + K + +
Sbjct: 76 GYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 125
Score = 46.6 bits (111), Expect = 3e-05
Identities = 25/90 (27%), Positives = 40/90 (44%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
F+ + + + F + AI+ NP A Y N Y AL + A+ L +I G
Sbjct: 17 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG 76
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPS 651
Y AA+ +A G A++ Y T ++ P
Sbjct: 77 YYRRAASNMALGKFRAALRDYETVVKVKPH 106
Score = 43.5 bits (103), Expect = 3e-04
Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 11/128 (8%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
AE N Y + + A++ Y A+ L P Y N + A + Y
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLA-------YLRTECYGY 58
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
AL +AIE + + A G+ A+ +E V + P+ DA +
Sbjct: 59 ALGDAT----RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 114
Query: 705 GNVLKEAR 712
K +
Sbjct: 115 QECNKIVK 122
Score = 42.7 bits (101), Expect = 4e-04
Identities = 24/82 (29%), Positives = 36/82 (43%)
Query: 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277
+ F + AI+ NP A Y N Y AL + A+ L +I GY AA+
Sbjct: 24 NAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 83
Query: 278 LVAAGDMEQAVQAYVTALQYNP 299
+A G A++ Y T ++ P
Sbjct: 84 NMALGKFRAALRDYETVVKVKP 105
Score = 38.1 bits (89), Expect = 0.013
Identities = 28/155 (18%), Positives = 51/155 (32%), Gaps = 7/155 (4%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
AE N Y + + A++ Y A+ L P Y N + A + A+
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIK 195
A++ + ALG+ A D ++K +AK + E K
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAA------LRDYETVVKVKPHDKDAKMKYQECNK 119
Query: 196 PVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQN 230
V + K + ++S ++ I+
Sbjct: 120 IV-KQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153
Score = 32.7 bits (75), Expect = 0.52
Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 17/94 (18%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
AE N Y + + A++ Y A+ L P Y N + A + A+
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 294 ALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGA 327
A++ + + K +RR A
Sbjct: 66 AIELDK-----------------KYIKGYYRRAA 82
Score = 29.3 bits (66), Expect = 7.0
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 223 STLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLA 275
+T AI+ + + Y G+ + AL +Y V++KP D +
Sbjct: 63 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 115
Score = 29.3 bits (66), Expect = 7.0
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 574 STLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLA 626
+T AI+ + + Y G+ + AL +Y V++KP D +
Sbjct: 63 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 115
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 42.5 bits (100), Expect = 2e-04
Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 7/120 (5%)
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
K+ + NL Y + +A+++ +++ + + L A + G +E+A
Sbjct: 82 KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEA 141
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALG-RLDEAKDLYCVRSDLGNLLKALGRLDEAKN 188
+ A NP+ +R+ + L + K + G + +E KN
Sbjct: 142 KENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTF------GGMFDKGPLYEEKKN 195
Score = 41.3 bits (97), Expect = 5e-04
Identities = 13/73 (17%), Positives = 30/73 (41%)
Query: 579 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 638
K+ + NL Y + +A+++ +++ + + L A + G +E+A
Sbjct: 82 KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEA 141
Query: 639 VQAYVTALQYNPS 651
+ A NP+
Sbjct: 142 KENLYKAASLNPN 154
Score = 40.5 bits (95), Expect = 8e-04
Identities = 13/72 (18%), Positives = 29/72 (40%)
Query: 228 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 287
K+ + NL Y + +A+++ +++ + + L A + G +E+A
Sbjct: 82 KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEA 141
Query: 288 VQAYVTALQYNP 299
+ A NP
Sbjct: 142 KENLYKAASLNP 153
Score = 40.5 bits (95), Expect = 8e-04
Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 27/128 (21%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG----------------YINLAAA 628
A GN + ++ ++ EA+ Y+ A+ + +NLA
Sbjct: 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 97
Query: 629 LVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFE 688
D +A+ L+ + + +KA+ VA G + A +
Sbjct: 98 YNKNKDYPKAIDHASKVLKIDKN-NVKALYKL---GVANMYFG-------FLEEAKENLY 146
Query: 689 KAVSLDPN 696
KA SL+PN
Sbjct: 147 KAASLNPN 154
Score = 37.1 bits (86), Expect = 0.012
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 24/110 (21%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG----------------YINLAAA 119
A GN + ++ ++ EA+ Y+ A+ + +NLA
Sbjct: 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 97
Query: 120 LVAAGDMEQAVQAYVTALQYNPD----LYCVRSDLGNLLKALGRLDEAKD 165
D +A+ L+ + + LY + LG G L+EAK+
Sbjct: 98 YNKNKDYPKAIDHASKVLKIDKNNVKALY--K--LGVANMYFGFLEEAKE 143
Score = 34.4 bits (79), Expect = 0.10
Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 5/129 (3%)
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDF-----AVAWSNLGCVFNAQGEIWL 682
++ +A+ Y AL + + D NL +N +
Sbjct: 47 EFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPK 106
Query: 683 AIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCE 742
AI H K + +D N + A LG + A Y ++ + DI E C
Sbjct: 107 AIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166
Query: 743 AKTEELNKK 751
K +E KK
Sbjct: 167 NKLKEARKK 175
Score = 33.6 bits (77), Expect = 0.16
Identities = 18/117 (15%), Positives = 35/117 (29%), Gaps = 34/117 (29%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG----------------YINLAAA 277
A GN + ++ ++ EA+ Y+ A+ + +NLA
Sbjct: 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 97
Query: 278 LVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVMMKR 333
D +A+ L+ + KAL++ G A +
Sbjct: 98 YNKNKDYPKAIDHASKVLKIDK-----------------NNVKALYKLGVANMYFGF 137
Score = 32.1 bits (73), Expect = 0.49
Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 18/122 (14%)
Query: 151 GNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYG 210
GN ++EA Y +AL + + + ++ + N
Sbjct: 45 GNEFFKKNEINEAIVKY---------KEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95
Query: 211 ------GRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 264
P ++ A + +K + +A LG G L+EA EN A L
Sbjct: 96 TCYNKNKDYPKAIDHA---SKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152
Query: 265 PD 266
P+
Sbjct: 153 PN 154
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 43.3 bits (102), Expect = 2e-04
Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 26/155 (16%)
Query: 557 PITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-- 614
+ + +K+ + ++ + G VY + G+ ++AL Y+ V
Sbjct: 119 ELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLE 178
Query: 615 -KPDFIDG------------YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP 661
+ F + ++NLA + A+++ AL+ + + K + R
Sbjct: 179 YESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRR- 236
Query: 662 DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
G A + LA F+K + L PN
Sbjct: 237 ---------GEAHLAVNDFELARADFQKVLQLYPN 262
Score = 42.2 bits (99), Expect = 5e-04
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 1/101 (0%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A K L ++ NL + + A+E+ A+ L + G A +A D E
Sbjct: 188 AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFE 247
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEA-KDLY 167
A + LQ P+ ++ L + + R K LY
Sbjct: 248 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLY 288
Score = 40.3 bits (94), Expect = 0.002
Identities = 18/74 (24%), Positives = 28/74 (37%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
A K L ++ NL + + A+E+ A+ L + G A +A D E
Sbjct: 188 AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFE 247
Query: 286 QAVQAYVTALQYNP 299
A + LQ P
Sbjct: 248 LARADFQKVLQLYP 261
Score = 36.8 bits (85), Expect = 0.025
Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 23/110 (20%)
Query: 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRL---KPDFIDG------------YINLAAA 119
+ G VY + G+ ++AL Y+ V + F + ++NLA
Sbjct: 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205
Query: 120 LVAAGDMEQAVQAYVTALQYNPD----LYCVRSDLGNLLKALGRLDEAKD 165
+ A+++ AL+ + + L R G A+ + A+
Sbjct: 206 HLKLQAFSAAIESCNKALELDSNNEKGLS--R--RGEAHLAVNDFELARA 251
Score = 34.1 bits (78), Expect = 0.19
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 33/117 (28%)
Query: 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRL---KPDFIDG------------YINLAAA 277
+ G VY + G+ ++AL Y+ V + F + ++NLA
Sbjct: 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205
Query: 278 LVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVMMKR 333
+ A+++ AL+ + K L RRG A + +
Sbjct: 206 HLKLQAFSAAIESCNKALELDS-----------------NNEKGLSRRGEAHLAVND 245
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 43.1 bits (101), Expect = 3e-04
Identities = 27/168 (16%), Positives = 54/168 (32%), Gaps = 30/168 (17%)
Query: 548 DLTREGGSIP----ITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 603
+ + I + + +K+ + K+ A G VY + G+ +
Sbjct: 227 EAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQ 286
Query: 604 ALENYRHAVR---------------LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 648
A+ Y V + + ++NLA + + +AV+ AL
Sbjct: 287 AVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346
Query: 649 NPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + K + R A + E A FEK + ++P
Sbjct: 347 DSAN-EKGLYRR---GEAQLLMN-------EFESAKGDFEKVLEVNPQ 383
Score = 38.5 bits (89), Expect = 0.008
Identities = 26/135 (19%), Positives = 44/135 (32%), Gaps = 7/135 (5%)
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
L A+ NL Y + + +A+E A+ L G A + + E A
Sbjct: 311 ASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESA 370
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDE-AKDLYCVRSDLGNLLKALGRLDEAKN 188
+ L+ NP R + K +E + +Y N+ K D +
Sbjct: 371 KGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIY------ANMFKKFAEQDAKEE 424
Query: 189 LHTENIKPVTMKVQN 203
+ K + V N
Sbjct: 425 ANKAMGKKTSEGVTN 439
Score = 36.2 bits (83), Expect = 0.048
Identities = 16/72 (22%), Positives = 26/72 (36%)
Query: 228 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 287
L A+ NL Y + + +A+E A+ L G A + + E A
Sbjct: 311 ASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESA 370
Query: 288 VQAYVTALQYNP 299
+ L+ NP
Sbjct: 371 KGDFEKVLEVNP 382
>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A
family, amino-acid biosynthesis, metallopeptidase; 1.90A
{Rhodopseudomonas palustris}
Length = 433
Score = 42.4 bits (100), Expect = 5e-04
Identities = 13/89 (14%), Positives = 24/89 (26%), Gaps = 3/89 (3%)
Query: 469 VIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSW---RT 525
+ ++ TPQ + + L + + ++ A L+ SG
Sbjct: 288 STAAWCELDCRLGLLTGDTPQEAMRGIEKCLADAQATDSFLSENPAELVWSGFQADPAVC 347
Query: 526 NPEHPNYVAAARATKYVYNVEPDLTREGG 554
P A K +N D
Sbjct: 348 EPGGVAEDVLTAAHKAAFNAPLDARLSTA 376
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 42.1 bits (99), Expect = 8e-04
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 14/63 (22%)
Query: 729 ITDEDIDVILERCEAKTEELNKKFEQLGESSLRDFTLDAPTQSVYKFEGEDYREK---QK 785
+ D ++D +L E + LG + +FE DY+
Sbjct: 747 LEDLNLDDVLNHAEDHVTTPDLGESHLGGEEF-----------LKQFEVTDYKADIDWDD 795
Query: 786 IVP 788
I+P
Sbjct: 796 IIP 798
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 40.4 bits (94), Expect = 0.002
Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 22/126 (17%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
A+ GN + +L+EA++ Y A+ Y+ G + A
Sbjct: 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--------YMGDDFMFQLYGKYQDMALAVKN 230
Query: 645 ALQYNPS-CYLK-------------AIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKA 690
N + C +K + A G G++ A F KA
Sbjct: 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKA 290
Query: 691 VSLDPN 696
P+
Sbjct: 291 QKYAPD 296
Score = 37.7 bits (87), Expect = 0.013
Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 1/99 (1%)
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
+ + N+ + + EA+ + + + A G M+ A
Sbjct: 224 MALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSA 283
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKAL-GRLDEAKDLY 167
+ A +Y PD +R +L L + + K++Y
Sbjct: 284 RDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY 322
Score = 35.0 bits (80), Expect = 0.091
Identities = 10/73 (13%), Positives = 22/73 (30%)
Query: 579 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 638
+ + N+ + + EA+ + + + A G M+ A
Sbjct: 224 MALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSA 283
Query: 639 VQAYVTALQYNPS 651
+ A +Y P
Sbjct: 284 RDDFRKAQKYAPD 296
Score = 34.2 bits (78), Expect = 0.15
Identities = 10/72 (13%), Positives = 22/72 (30%)
Query: 228 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 287
+ + N+ + + EA+ + + + A G M+ A
Sbjct: 224 MALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSA 283
Query: 288 VQAYVTALQYNP 299
+ A +Y P
Sbjct: 284 RDDFRKAQKYAP 295
Score = 32.3 bits (73), Expect = 0.63
Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 34/110 (30%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVR-----------------LKPDFIDGYINLAA 276
A+ GN + +L+EA++ Y A+ ++N+AA
Sbjct: 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAA 238
Query: 277 ALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG 326
L+ ++A+ L + KAL+RRG
Sbjct: 239 CLIKLKRYDEAIGHCNIVLTEEE-----------------KNPKALFRRG 271
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 38.9 bits (91), Expect = 0.002
Identities = 17/96 (17%), Positives = 35/96 (36%)
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
+ + Y+N+ Y G L EA E ++ + A A +AA +++A
Sbjct: 57 ELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEA 116
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKD 165
+ L+ +P V + ++ +A
Sbjct: 117 EEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADS 152
Score = 37.0 bits (86), Expect = 0.010
Identities = 25/146 (17%), Positives = 45/146 (30%), Gaps = 29/146 (19%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG------------------YINLA 626
EA GN + +EA++ YR A+ I Y N++
Sbjct: 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMS 70
Query: 627 AALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHH 686
+ GD+ +A + L+ + KA+ R A A ++ A
Sbjct: 71 QCYLNIGDLHEAEETSSEVLKREET-NEKALFRR---AKARIAA-------WKLDEAEED 119
Query: 687 FEKAVSLDPNFLDAYINLGNVLKEAR 712
+ + P ++ E R
Sbjct: 120 LKLLLRNHPAAASVVAREMKIVTERR 145
Score = 36.6 bits (85), Expect = 0.013
Identities = 15/73 (20%), Positives = 30/73 (41%)
Query: 579 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 638
+ + Y+N+ Y G L EA E ++ + A A +AA +++A
Sbjct: 57 ELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEA 116
Query: 639 VQAYVTALQYNPS 651
+ L+ +P+
Sbjct: 117 EEDLKLLLRNHPA 129
Score = 35.8 bits (83), Expect = 0.023
Identities = 15/72 (20%), Positives = 29/72 (40%)
Query: 228 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 287
+ + Y+N+ Y G L EA E ++ + A A +AA +++A
Sbjct: 57 ELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEA 116
Query: 288 VQAYVTALQYNP 299
+ L+ +P
Sbjct: 117 EEDLKLLLRNHP 128
Score = 33.5 bits (77), Expect = 0.15
Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 26/112 (23%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG------------------YINLA 117
EA GN + +EA++ YR A+ I Y N++
Sbjct: 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMS 70
Query: 118 AALVAAGDMEQAVQAYVTALQYNPD----LYCVRSDLGNLLKALGRLDEAKD 165
+ GD+ +A + L+ L+ R A +LDEA++
Sbjct: 71 QCYLNIGDLHEAEETSSEVLKREETNEKALF--R--RAKARIAAWKLDEAEE 118
Score = 30.0 bits (68), Expect = 1.6
Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 36/119 (30%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG------------------YINLA 275
EA GN + +EA++ YR A+ I Y N++
Sbjct: 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMS 70
Query: 276 AALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVMMKR 333
+ GD+ +A + L+ KAL+RR A + +
Sbjct: 71 QCYLNIGDLHEAEETSSEVLKREE-----------------TNEKALFRRAKARIAAWK 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 39.4 bits (92), Expect = 0.003
Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 11/125 (8%)
Query: 73 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA 132
P E + + +AL A +L + + LA L+A E A
Sbjct: 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAV 173
Query: 133 Y-----------VTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALG 181
L +L +D + + ++ E + + + L L +G
Sbjct: 174 LXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVG 233
Query: 182 RLDEA 186
R +EA
Sbjct: 234 RNEEA 238
Score = 39.0 bits (91), Expect = 0.005
Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 11/127 (8%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA 641
P E + + +AL A +L + + LA L+A E A
Sbjct: 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAV 173
Query: 642 YVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAY 701
T + + + + + ++ I ++ V+ +P
Sbjct: 174 LXTIPLQDQDTRYQGLVAQIELLXQAADTP-----------EIQQLQQQVAENPEDAALA 222
Query: 702 INLGNVL 708
L L
Sbjct: 223 TQLALQL 229
Score = 37.5 bits (87), Expect = 0.016
Identities = 33/176 (18%), Positives = 57/176 (32%), Gaps = 22/176 (12%)
Query: 13 ELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLD--KSAHFSTLAIK 70
+ A + Q +Y A W+ N + LLL+ + + ++ +
Sbjct: 122 QQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD 181
Query: 71 QNPLLAEAYSNLGNVYK-----ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 125
Q+ + + + + E QLQ+ + P+ LA L G
Sbjct: 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE-------NPEDAALATQLALQLHQVGR 234
Query: 126 MEQAVQAYVTALQ----YNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLL 177
E+A++ L+ R +L ALG D Y R L LL
Sbjct: 235 NEEALELLFGHLRXDLTAADGQ--TRXTFQEILAALGTGDALASXY--RRQLYALL 286
Score = 34.8 bits (80), Expect = 0.098
Identities = 12/61 (19%), Positives = 19/61 (31%)
Query: 231 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA 290
P E + + +AL A +L + + LA L+A E A
Sbjct: 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAV 173
Query: 291 Y 291
Sbjct: 174 L 174
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 38.5 bits (90), Expect = 0.007
Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 29/134 (21%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVR---LKPDFIDG-------------YINLAAA 628
+E N+GN + + + A++ Y +R + +N+ A
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282
Query: 629 LVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFE 688
+ D + AV SC L+A+E P A + E A+ +
Sbjct: 283 KLKMSDWQGAVD----------SC-LEALEIDPSNTKALYRRAQGWQGLKEYDQALADLK 331
Query: 689 KAVSLDPNFLDAYI 702
KA + P D I
Sbjct: 332 KAQEIAPE--DKAI 343
Score = 37.0 bits (86), Expect = 0.023
Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 34/117 (29%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVR---LKPDFIDG-------------YINLAAA 277
+E N+GN + + + A++ Y +R + +N+ A
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282
Query: 278 LVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVMMKR 333
+ D + AV + + AL+ +P KAL+RR +K
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDP-----------------SNTKALYRRAQGWQGLKE 322
Score = 35.9 bits (83), Expect = 0.058
Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 25/112 (22%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVR---LKPDFIDG-------------YINLAAA 119
+E N+GN + + + A++ Y +R + +N+ A
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282
Query: 120 LVAAGDMEQAVQAYVTALQYNPD----LYCVRSDLGNLLKALGRLDEA-KDL 166
+ D + AV + + AL+ +P LY R + L D+A DL
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALY--RR--AQGWQGLKEYDQALADL 330
Score = 32.8 bits (75), Expect = 0.51
Identities = 13/73 (17%), Positives = 26/73 (35%)
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
K P+ N+G + Q A+++ A+ + P A + +QA
Sbjct: 267 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQA 326
Query: 130 VQAYVTALQYNPD 142
+ A + P+
Sbjct: 327 LADLKKAQEIAPE 339
Score = 32.0 bits (73), Expect = 0.88
Identities = 13/72 (18%), Positives = 25/72 (34%)
Query: 228 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 287
K P+ N+G + Q A+++ A+ + P A + +QA
Sbjct: 267 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQA 326
Query: 288 VQAYVTALQYNP 299
+ A + P
Sbjct: 327 LADLKKAQEIAP 338
Score = 31.2 bits (71), Expect = 1.6
Identities = 15/124 (12%), Positives = 39/124 (31%), Gaps = 18/124 (14%)
Query: 149 DLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNL--HTENIKPVTMKVQN--- 203
++GN + A Y K L ++ ++ + K + +
Sbjct: 228 NIGNTFFKSQNWEMAIKKY---------TKVLRYVEGSRAAAEDADGAKLQPVALSCVLN 278
Query: 204 -AIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR 262
++S A++ +P +A ++ + +AL + + A
Sbjct: 279 IGACKLKMSDWQGAVDSC---LEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335
Query: 263 LKPD 266
+ P+
Sbjct: 336 IAPE 339
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 38.2 bits (88), Expect = 0.009
Identities = 17/117 (14%), Positives = 36/117 (30%), Gaps = 13/117 (11%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG-------YINLAAALVAAGDMEQ 637
+ + N+Y E G L++ ++ + ++ D N A AL E+
Sbjct: 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEE 214
Query: 638 AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAI-HHFEKAVSL 693
++ A++ I + + G I ++KA
Sbjct: 215 SLYQVNKAIE-----ISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266
Score = 34.4 bits (78), Expect = 0.15
Identities = 21/182 (11%), Positives = 55/182 (30%), Gaps = 25/182 (13%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
+ + Y+ ++E + L ++ + K + ++
Sbjct: 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILE 137
Query: 71 QNPLLAE------------AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG------ 112
LL + + + N+Y E G L++ ++ + ++ D
Sbjct: 138 LKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197
Query: 113 -YINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSD------LGNLLKALGRLDEAKD 165
N A AL E+++ A++ + + + G L+ L + +
Sbjct: 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIE 257
Query: 166 LY 167
Sbjct: 258 DA 259
Score = 32.8 bits (74), Expect = 0.39
Identities = 23/256 (8%), Positives = 68/256 (26%), Gaps = 54/256 (21%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQ-CRKLDKSAHFSTLAI 69
L +A + + + R++ V++L ++ +
Sbjct: 49 LQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH 108
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG------YINLAAALVAA 123
+ + + ++ + + + + + ID +A
Sbjct: 109 PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAEN 168
Query: 124 GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRL 183
G +++ + + L+ L+ D + VR + L R
Sbjct: 169 GYLKKGIDLFEQILKQLEALH----------------DNEEFDVKVRYNHAKALYLDSRY 212
Query: 184 DEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQN--PLLAEAYSNLG 241
+E+ + I+ ++ + N L+ + Y G
Sbjct: 213 EESLYQVNKAIE-----------------------------ISCRINSMALIGQLYYQRG 243
Query: 242 NVYKERGQLQEALENY 257
++ + +E+
Sbjct: 244 ECLRKLEYEEAEIEDA 259
Score = 32.1 bits (72), Expect = 0.84
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG-------YINLAAALVAAGDMEQ 286
+ + N+Y E G L++ ++ + ++ D N A AL E+
Sbjct: 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEE 214
Query: 287 AVQAYVTALQY 297
++ A++
Sbjct: 215 SLYQVNKAIEI 225
Score = 31.3 bits (70), Expect = 1.5
Identities = 12/94 (12%), Positives = 21/94 (22%), Gaps = 13/94 (13%)
Query: 562 FECRKLDKSAHFSTLAIKQ-------NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL 614
E L K +KQ + N + +E+L A+ +
Sbjct: 166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225
Query: 615 ------KPDFIDGYINLAAALVAAGDMEQAVQAY 642
Y L E ++
Sbjct: 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDA 259
Score = 30.1 bits (67), Expect = 2.9
Identities = 7/70 (10%), Positives = 15/70 (21%), Gaps = 6/70 (8%)
Query: 228 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAA 281
+ N + +E+L A+ + Y L
Sbjct: 190 DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL 249
Query: 282 GDMEQAVQAY 291
E ++
Sbjct: 250 EYEEAEIEDA 259
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Length = 308
Score = 36.6 bits (84), Expect = 0.033
Identities = 21/147 (14%), Positives = 49/147 (33%), Gaps = 21/147 (14%)
Query: 579 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP-DFIDGYINLAAALVAAGDMEQ 637
K+N LL AY++ + R + ++ Y + ++ D YI A ++
Sbjct: 96 KKNMLLYFAYADY---EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKS 152
Query: 638 AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN- 696
+ A + + + V + + + + +A FE + +
Sbjct: 153 GRMIFKKAREDARTRH--------HVYVTAALM--EYYCSKDKSVAFKIFELGLKKYGDI 202
Query: 697 ------FLDAYINLGNVLKEARIFDRA 717
++D +L +F+R
Sbjct: 203 PEYVLAYIDYLSHLNEDNNTRVLFERV 229
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 34.3 bits (79), Expect = 0.050
Identities = 14/66 (21%), Positives = 18/66 (27%), Gaps = 3/66 (4%)
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI---DGYINLAAALVAAGDME 127
A LG Y Q A +R V P G + L + G
Sbjct: 34 NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNT 93
Query: 128 QAVQAY 133
+A Q
Sbjct: 94 EAQQTL 99
Score = 34.3 bits (79), Expect = 0.050
Identities = 14/66 (21%), Positives = 18/66 (27%), Gaps = 3/66 (4%)
Query: 229 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI---DGYINLAAALVAAGDME 285
A LG Y Q A +R V P G + L + G
Sbjct: 34 NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNT 93
Query: 286 QAVQAY 291
+A Q
Sbjct: 94 EAQQTL 99
Score = 34.3 bits (79), Expect = 0.050
Identities = 14/66 (21%), Positives = 18/66 (27%), Gaps = 3/66 (4%)
Query: 580 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI---DGYINLAAALVAAGDME 636
A LG Y Q A +R V P G + L + G
Sbjct: 34 NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNT 93
Query: 637 QAVQAY 642
+A Q
Sbjct: 94 EAQQTL 99
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP:
c.56.5.4 d.58.19.1
Length = 470
Score = 35.3 bits (81), Expect = 0.091
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 305 DGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKI 358
+GW +PF ++ + ++ RG+ K P L + + K I
Sbjct: 95 EGWTRDPFKMEIDEEGRIYGRGSAD-DKGPSLTAYYGMLLLKEAGFKPKKKIDF 147
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding,
metallopeptidase, structural genomics, PSI-2, protein
struc initiative; 2.00A {Haemophilus influenzae} PDB:
3ic1_A
Length = 377
Score = 34.9 bits (81), Expect = 0.095
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 469 VIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPE 528
VIP ++ +F++R T + +++ V + L + K++ SGK + T P
Sbjct: 246 VIPAELYIQFNLRYCTEVTDEIIKQKVAEMLEK------HNLKYRIEWNLSGKPFLTKPG 299
Query: 529 HPNYVAAARATKYVYNVEPDLTREGG 554
+ A + + P GG
Sbjct: 300 -KLLDSITSAIEETIGITPKAETGGG 324
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat,
cysteine rich protein, loop-helix-TU repeat protein,
hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Length = 273
Score = 34.9 bits (81), Expect = 0.10
Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 29/132 (21%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL-----VAAGDMEQAV 639
+ LG + +A + + A L G NL V ++++A
Sbjct: 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEK-NLKKAA 62
Query: 640 QAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE-----IWLAIHHFEKAVSLD 694
Y KA + +++ LG G+ A+ ++ KA L
Sbjct: 63 S-----------FYAKACDL--NYSNGCHLLG-NLYYSGQGVSQNTNKALQYYSKACDL- 107
Query: 695 PNFLDAYINLGN 706
+ + +LG
Sbjct: 108 -KYAEGCASLGG 118
Score = 28.7 bits (65), Expect = 8.5
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHA 102
+ LG + +A + + A
Sbjct: 6 PKELVGLGAKSYKEKDFTQAKKYFEKA 32
Score = 28.7 bits (65), Expect = 8.5
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHA 260
+ LG + +A + + A
Sbjct: 6 PKELVGLGAKSYKEKDFTQAKKYFEKA 32
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote
interaction, syphilis, lipoprotein, transport protein;
2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Length = 301
Score = 33.6 bits (76), Expect = 0.24
Identities = 26/201 (12%), Positives = 48/201 (23%), Gaps = 15/201 (7%)
Query: 514 AYLLDSGKSWRTNPEHPNY-VAAARA-TKYVYNVEPDLTREGGSIPITLTFECRKLDKSA 571
L NP H +A R Y + +P + A
Sbjct: 50 LVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAF---VQTPAQYLPEDEFEAQNEAYSRA 106
Query: 572 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 631
L ++ + + + ++ R + + VA
Sbjct: 107 R--KLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVA 164
Query: 632 AGDMEQAVQAYVTALQYNPSCYLKAIETRPDF--AVAWSNLGCVFNA-----QGEIWLAI 684
A + A + +A + P + W+ L + A G + A
Sbjct: 165 AFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH 224
Query: 685 HHFEKAVSLDPN-FLDAYINL 704
FE D +I
Sbjct: 225 TAFEHLTRYCSAHDPDHHITY 245
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics,
unknown function; HET: MSE; 1.90A {Neisseria
meningitidis} SCOP: c.56.5.4 d.58.19.1
Length = 393
Score = 33.4 bits (77), Expect = 0.30
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 469 VIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPE 528
VIPG++ KF+ R T +++ V L++ ++ SG+ + T
Sbjct: 249 VIPGELNVKFNFRFSTESTEAGLKQRVHAILDK------HGVQYDLQWSCSGQPFLTQAG 302
Query: 529 HPNYVAAARATKYVYNVEPDLTREGG 554
A A +E +L+ GG
Sbjct: 303 -KLTDVARAAIAETCGIEAELSTTGG 327
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Length = 530
Score = 33.7 bits (76), Expect = 0.32
Identities = 17/135 (12%), Positives = 38/135 (28%), Gaps = 11/135 (8%)
Query: 588 YSNLGNVYKERGQLQEALENYRHAVR-LKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 646
Y + + R + ++ Y + D YI A ++ + A
Sbjct: 324 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383
Query: 647 QYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGN 706
+ TR V + + + + +A FE + + + + +
Sbjct: 384 EDAR--------TRHHVYVTAALM--EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYID 433
Query: 707 VLKEARIFDRANTLF 721
L + LF
Sbjct: 434 YLSHLNEDNNTRVLF 448
>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural
genomics, joint center for structural JCSG; 2.97A
{Corynebacterium glutamicum}
Length = 369
Score = 33.4 bits (77), Expect = 0.34
Identities = 15/107 (14%), Positives = 28/107 (26%), Gaps = 15/107 (14%)
Query: 449 YPSLSLHGIEGAFSGPGGKT-VIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARN 507
L++ E G VIP + R PN+ ++V++ L +
Sbjct: 228 REGLNIVFCES-----GVANNVIPDLAWMNLNFRFAPNRDLNEAIEHVVETL-----ELD 277
Query: 508 SPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGG 554
+ + + D A E + G
Sbjct: 278 GQDGIEWAVEDGAGGALPGLGQQVTSGLIDAV----GREKIRAKFGW 320
>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic
metallopeptidase, peptidase family M20/M25/M40,
structural genomics; HET: MSE PGE PG4; 1.60A
{Desulfovibrio desulfuricans subsp}
Length = 364
Score = 33.0 bits (76), Expect = 0.42
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 449 YPSLSLHGIEGAFSGPGGKT-VIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARN 507
+ +++L I G T +P G F+IR+ + P + + ++
Sbjct: 224 HRTVNLGRIRA-----GESTNKVPDVAEGWFNIRVTEHDDPGALIDKIRKTVSGTVSIVR 278
Query: 508 S 508
+
Sbjct: 279 T 279
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown
function, SEL1-like repeats; 1.68A {Escherichia coli}
Length = 490
Score = 33.0 bits (76), Expect = 0.42
Identities = 31/151 (20%), Positives = 55/151 (36%), Gaps = 24/151 (15%)
Query: 567 LDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ---EALENYRHAVRLKPDFIDGYI 623
+++ + T + +Q A A +NLG +Y G + +A+E +R A
Sbjct: 312 REQAISWYTKSAEQG--DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQF 367
Query: 624 NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE---- 679
NL AL+ ++ + A + KA E + A LG ++ G
Sbjct: 368 NLGNALLQGKGVK---KDEQQAAIW----MRKAAEQ--GLSAAQVQLGEIY-YYGLGVER 417
Query: 680 -IWLAIHHFEKAVSLDPNFLDAYINLGNVLK 709
A F+ A + D N N+ +
Sbjct: 418 DYVQAWAWFDTASTNDMN--LFGTENRNITE 446
>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A
{Xanthomonas campestris} PDB: 2f8h_A
Length = 369
Score = 33.0 bits (76), Expect = 0.46
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 8/92 (8%)
Query: 449 YPSLSLHGIEGAFSGPGGKT-VIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARN 507
++ ++G G K +I +F R +P+ + + + A +
Sbjct: 223 GLRFNIGRVDG-----GIKANMIAPAAELRFGFRPLPSMDVDGLLATFAGFADPA--AAH 275
Query: 508 SPNKFKAYLLDSGKSWRTNPEHPNYVAAARAT 539
F+ L SG R A A
Sbjct: 276 FEETFRGPSLPSGDIARAEERRLAARDVADAL 307
>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O*
1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O*
1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O*
1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ...
Length = 116
Score = 30.8 bits (70), Expect = 0.70
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 444 MSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVG 476
R + ++L IE ++ V+PGKV+G
Sbjct: 36 KPRRTHAEVNLGRIE-RYAQEDETVVVPGKVLG 67
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.76
Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 18/81 (22%)
Query: 23 DYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNL 82
D + E ++ WR+E + ++LD ++ + + +A +L
Sbjct: 78 DRLTQEPESIRKWREEQRK------------RLQELDAAS-----KVMEQEWREKAKKDL 120
Query: 83 GNVYKERG-QLQEALENYRHA 102
+ + Q+++ N R A
Sbjct: 121 EEWNQRQSEQVEKNKINNRIA 141
Score = 31.3 bits (70), Expect = 1.0
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 8/38 (21%)
Query: 866 PELGSDATKAQKEEQK----KIDESEPLTEEELAEKEE 899
PE + + +EEQ+ ++D + + E+E EK +
Sbjct: 84 PE----SIRKWREEQRKRLQELDAASKVMEQEWREKAK 117
>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha
helical barrel, beta barrel; 2.10A {Escherichia coli}
SCOP: f.5.1.1 PDB: 1tqq_A 2vde_A 2vdd_A 2wmz_A* 2xmn_A*
Length = 428
Score = 32.0 bits (73), Expect = 0.80
Identities = 10/73 (13%), Positives = 18/73 (24%), Gaps = 7/73 (9%)
Query: 75 LAEAYSNL----GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
+ A + N R L A+E R + + +
Sbjct: 154 VQNARAQYDTVLANELTARNNLDNAVEQLRQITGNYYPELAALNVENFKTDKPQPVNALL 213
Query: 131 QAYVTALQYNPDL 143
+ A + N L
Sbjct: 214 K---EAEKRNLSL 223
Score = 31.6 bits (72), Expect = 1.4
Identities = 10/74 (13%), Positives = 18/74 (24%), Gaps = 7/74 (9%)
Query: 233 LAEAYSNL----GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 288
+ A + N R L A+E R + + +
Sbjct: 154 VQNARAQYDTVLANELTARNNLDNAVEQLRQITGNYYPELAALNVENFKTDKPQPVNALL 213
Query: 289 QAYVTALQYNPLLK 302
+ A + N L
Sbjct: 214 K---EAEKRNLSLL 224
Score = 29.7 bits (67), Expect = 4.3
Identities = 10/72 (13%), Positives = 18/72 (25%), Gaps = 7/72 (9%)
Query: 584 LAEAYSNL----GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 639
+ A + N R L A+E R + + +
Sbjct: 154 VQNARAQYDTVLANELTARNNLDNAVEQLRQITGNYYPELAALNVENFKTDKPQPVNALL 213
Query: 640 QAYVTALQYNPS 651
+ A + N S
Sbjct: 214 K---EAEKRNLS 222
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.8 bits (72), Expect = 1.4
Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 28/110 (25%)
Query: 563 ECRKLDKSAHF----STLAIKQNPLLAEAYSNLGNVYKER---------GQLQEALENYR 609
++D F A + + + Y V+ G + AL
Sbjct: 1005 IISQVDPITLFVLVSVVEAFIAS-GITDPYEMYKYVHVSEVGNCSGSGMGGV-SALRGM- 1061
Query: 610 HAVRLK------PDFIDGYINLAAALV------AAGDMEQAVQAYVTALQ 647
R K + +IN +A V ++G ++ V A T+++
Sbjct: 1062 FKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGACATSVE 1111
Score = 30.2 bits (68), Expect = 4.1
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 28/108 (25%)
Query: 56 RKLDKSAHF----STLAIKQNPLLAEAYSNLGNVYKER---------GQLQEALENYRHA 102
++D F A + + + Y V+ G + AL
Sbjct: 1007 SQVDPITLFVLVSVVEAFIAS-GITDPYEMYKYVHVSEVGNCSGSGMGGV-SALRGM-FK 1063
Query: 103 VRLK------PDFIDGYINLAAALV------AAGDMEQAVQAYVTALQ 138
R K + +IN +A V ++G ++ V A T+++
Sbjct: 1064 DRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGACATSVE 1111
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB:
2vps_A 2vpm_A
Length = 652
Score = 31.2 bits (70), Expect = 1.7
Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 11/111 (9%)
Query: 454 LHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFK 513
E A + G+ V + + + Y +WK S
Sbjct: 457 TWMWESAITDYYAAREERGENWKPSPKDKVRLCDLLLGDDWEILYFEPMWKVIPSNKAIL 516
Query: 514 AYLLDSGKSWRTNPEHPNYVAA-----ARATKYVYNVEPDLTREGGSIPIT 559
+ + +PEHP + A K+ Y +P + R G ++ IT
Sbjct: 517 PMI------YHNHPEHPAILKAEYELTDELRKHGYAKKPIVGRVGSNVIIT 561
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 1.8
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Query: 744 KTEELNKKFEQLGESSLRDFTLD-APTQSV 772
+ + L KK + +SL+ + D AP ++
Sbjct: 18 EKQAL-KKLQ----ASLKLYADDSAPALAI 42
>3hag_A Capsid protein; jelly-roll beta sheets, beta barrel, icosahedral
virus; 3.50A {Hepatitis e virus type 4} PDB: 2zzq_A
2ztn_A
Length = 504
Score = 31.0 bits (69), Expect = 1.9
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 298 NPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISA 347
+ LL +DG NT A +R + RP++ A +IS
Sbjct: 51 SSLLPLQDGTNTHIMAT-EASNYAQYRVVRATIRYRPLVPSAVGGYAISI 99
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus} PDB: 3lvh_A
Length = 624
Score = 30.3 bits (68), Expect = 3.2
Identities = 47/234 (20%), Positives = 85/234 (36%), Gaps = 32/234 (13%)
Query: 77 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 136
+S L ++G ++EA+++Y +K D Y+ + A +G+ E+ V+ A
Sbjct: 55 AVWSQLAKAQLQKGMVKEAIDSY-----IKADDPSSYMEVVQAANTSGNWEELVKYLQMA 109
Query: 137 LQYNPDLYCVRSDLGNLLKALGRLDEAKDL-----YCVRSDLGNLLKALGRLDEAKNLHT 191
+ + Y V ++L L RL E ++ +G+ D AK L+
Sbjct: 110 RKKARESY-VETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYN 168
Query: 192 ---ENIKPVTMKV-----QNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNV 243
+ + V Q A+ T + F+ + K+ L ++
Sbjct: 169 NVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH 228
Query: 244 YKERGQLQEALENYRHAVRLKPDFIDGYIN-LAAALVAAGDMEQAVQAYVTALQ 296
E L+E + Y+ GY L L AA +E+A T L
Sbjct: 229 ADE---LEELINYYQDR---------GYFEELITMLEAALGLERAHMGMFTELA 270
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 30.2 bits (68), Expect = 3.5
Identities = 33/179 (18%), Positives = 54/179 (30%), Gaps = 19/179 (10%)
Query: 117 AAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNL 176
AA V + + +L+ + L E + DLG++
Sbjct: 394 VAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVR----ALLDLGDV 449
Query: 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQN----PL 232
KA +LD+ + V + A+ G + HF+ + P
Sbjct: 450 AKATRKLDDLAERVGWRWRLVWYR---AVAELLTGDYDSAT--KHFTEVLDTFPGELAPK 504
Query: 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291
LA A + E + + Y+ I LA A A GD AV+
Sbjct: 505 LALAATA------ELAGNTDEHKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557
Score = 29.8 bits (67), Expect = 4.9
Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Query: 73 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA 132
P LA A + E + + Y+ I LA A A GD AV+
Sbjct: 503 PKLALAATA------ELAGNTDEHKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556
Query: 133 Y 133
Sbjct: 557 L 557
Score = 29.8 bits (67), Expect = 4.9
Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA 641
P LA A + E + + Y+ I LA A A GD AV+
Sbjct: 503 PKLALAATA------ELAGNTDEHKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556
Query: 642 Y 642
Sbjct: 557 L 557
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed
mutagenesis, structure comparison, zinc, hydrolase;
1.40A {Homo sapiens} SCOP: c.56.5.4
Length = 198
Score = 29.3 bits (66), Expect = 3.7
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 304 EDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISAN 348
++ W+ +PF + ++ RGA MK + A+ +
Sbjct: 88 KEHWSHDPFEAFKDSEGYIYARGA-QDMKCVSIQYLEAVRRLKVE 131
>3at7_A Alginate-binding flagellin; two UP-and-DOWN four-helical bundles,
ALGI structural protein; 2.10A {Sphingomonas}
Length = 283
Score = 29.6 bits (66), Expect = 4.5
Identities = 8/49 (16%), Positives = 18/49 (36%)
Query: 91 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 139
L + + +Y+ V + V AGD+ +A + + +
Sbjct: 30 DLVQPISDYKIYVSENLQTLVRDTREFTNAVKAGDVAKAKKLFASTRMS 78
Score = 29.6 bits (66), Expect = 4.5
Identities = 8/49 (16%), Positives = 18/49 (36%)
Query: 249 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 297
L + + +Y+ V + V AGD+ +A + + +
Sbjct: 30 DLVQPISDYKIYVSENLQTLVRDTREFTNAVKAGDVAKAKKLFASTRMS 78
Score = 29.6 bits (66), Expect = 4.5
Identities = 8/49 (16%), Positives = 18/49 (36%)
Query: 600 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 648
L + + +Y+ V + V AGD+ +A + + +
Sbjct: 30 DLVQPISDYKIYVSENLQTLVRDTREFTNAVKAGDVAKAKKLFASTRMS 78
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase,
transferase-transferase inhibitor; HET: SUC 3CX FPP 778;
2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A*
3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Length = 349
Score = 29.8 bits (66), Expect = 4.8
Identities = 24/202 (11%), Positives = 56/202 (27%), Gaps = 13/202 (6%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG-DM 126
I + +A + + + + ALE VR+ P + + L + +
Sbjct: 46 PIMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSL 105
Query: 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEA 186
E ++ N Y V LL + D ++ + +L +
Sbjct: 106 EDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH-------GSLLP--DP 156
Query: 187 KNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE 246
KN H + + E + ++ + A+ +
Sbjct: 157 KNYH--TWAYLHWLYSHFSTLGRISEAQWGSELD-WCNEMLRVDGRNNSAWGWRWYLRVS 213
Query: 247 RGQLQEALENYRHAVRLKPDFI 268
R + + + + + I
Sbjct: 214 RPGAETSSRSLQDELIYILKSI 235
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat,
CLP1, PCF11, structural protein; 2.30A {Kluyveromyces
lactis} PDB: 4e85_A 4eba_A
Length = 679
Score = 29.6 bits (65), Expect = 5.6
Identities = 11/85 (12%), Positives = 21/85 (24%), Gaps = 3/85 (3%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR---LKPDFIDGYINLAAALVAAG 282
I++ P Y L + Q ++ E + L + ++L +
Sbjct: 58 MIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEEL 117
Query: 283 DMEQAVQAYVTALQYNPLLKKEDGW 307
D L W
Sbjct: 118 DAAVIEPVLARCLSKELGNNDLSLW 142
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 29.7 bits (67), Expect = 6.2
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 13/75 (17%)
Query: 390 EPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRY 449
+ P +E ++DF EDF A + ++
Sbjct: 273 AHRPMPVDVDTLGAYAPETVSEHHMPSRLDFTLEDFLPAWEA-------------TKQLL 319
Query: 450 PSLSLHGIEGAFSGP 464
P+L+ IE F+G
Sbjct: 320 PALADSEIEDGFNGI 334
>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_O
Length = 121
Score = 28.0 bits (62), Expect = 6.4
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 443 LMSRWRYPSLSLHGIEGAFSGPGGKT---VIPGKVVGKFSIRIVPNQT 487
+S+ P +S+ I A G V+ G V I P T
Sbjct: 33 FLSKINRPPVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTT 80
>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc
peptidase, peptidase family M20 structural genomics;
2.31A {Bacteroides thetaiotaomicron vpi-5482}
Length = 356
Score = 29.1 bits (66), Expect = 7.5
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 449 YPSLSLHGIEGAFSGPGGKT-VIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKAR 506
+S+ I G + V+P K IR + + + + ++ KAR
Sbjct: 222 PVKMSVTVINA-----GTQHNVVPDKCTFVVDIRSNELYSNEDLFAEIRKHIACDAKAR 275
>2dt8_A DEGV family protein; fatty acid binding, structural genomics,
NPPSFA, natio project on protein structural and
functional analyses; HET: PLM; 1.48A {Thermus
thermophilus}
Length = 280
Score = 28.3 bits (64), Expect = 9.6
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 28/101 (27%)
Query: 117 AAALVAAG-DMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGN 175
A L+ G +E + A + L+ + + + L L + GR+ A+ LG
Sbjct: 129 AKELLEEGQSLEAVL-AELERLRRDHFVRFSVATLEFLKRG-GRIGGAQAF------LGT 180
Query: 176 LLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYG---GRK 213
LL N+KPV + ++ V G G K
Sbjct: 181 LL---------------NLKPV-LTLKEGRVEAAGRARGEK 205
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.395
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,332,260
Number of extensions: 916090
Number of successful extensions: 5767
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3461
Number of HSP's successfully gapped: 1002
Length of query: 904
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 802
Effective length of database: 3,853,851
Effective search space: 3090788502
Effective search space used: 3090788502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.6 bits)