Query psy17307
Match_columns 342
No_of_seqs 191 out of 728
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 18:39:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mca_B Protein DOM34, elongati 100.0 1.8E-72 6E-77 556.0 11.2 277 1-341 1-327 (390)
2 2vgn_A DOM34; translation term 100.0 3.6E-66 1.2E-70 510.7 28.2 274 1-341 1-333 (386)
3 3j15_A Protein pelota; ribosom 100.0 9.4E-68 3.2E-72 517.2 12.8 267 1-333 1-308 (357)
4 3oby_A Protein pelota homolog; 100.0 1.6E-66 5.5E-71 506.7 21.2 264 1-335 1-295 (352)
5 3obw_A Protein pelota homolog; 100.0 5.2E-66 1.8E-70 505.3 24.4 265 1-341 21-320 (364)
6 3agj_B Protein pelota homolog; 100.0 6.1E-63 2.1E-67 483.5 28.9 265 1-341 3-308 (358)
7 2qi2_A Pelota, cell division p 100.0 3.1E-62 1.1E-66 476.3 18.2 260 1-333 1-293 (347)
8 3e20_C Eukaryotic peptide chai 100.0 3.7E-35 1.3E-39 293.6 -6.1 213 107-332 66-332 (441)
9 1dt9_A ERF1, protein (eukaryot 100.0 1.3E-33 4.5E-38 282.6 -0.1 233 91-332 33-327 (437)
10 3agk_A Peptide chain release f 99.9 1.1E-27 3.6E-32 235.2 10.0 166 159-330 102-324 (373)
11 3ir9_A Peptide chain release f 99.4 1.7E-13 5.7E-18 120.2 3.7 59 274-334 2-75 (166)
12 1x52_A Pelota homolog, CGI-17; 99.3 3.2E-13 1.1E-17 112.9 -0.1 57 285-341 3-74 (124)
13 2qi2_A Pelota, cell division p 98.6 1.3E-08 4.6E-13 98.6 3.1 72 68-153 1-73 (347)
14 3agj_B Protein pelota homolog; 98.5 4.6E-08 1.6E-12 95.2 5.1 70 68-155 3-72 (358)
15 3obw_A Protein pelota homolog; 98.5 2.5E-07 8.6E-12 90.2 7.6 88 61-153 72-171 (364)
16 3j15_A Protein pelota; ribosom 98.4 1.2E-08 4.2E-13 99.3 -2.4 93 58-153 55-159 (357)
17 2vgn_A DOM34; translation term 98.4 1.5E-07 5E-12 92.6 3.3 64 76-155 14-77 (386)
18 3mca_B Protein DOM34, elongati 98.3 3E-08 1E-12 97.6 -1.8 65 77-155 13-77 (390)
19 3oby_A Protein pelota homolog; 98.1 2E-06 6.7E-11 83.6 4.0 90 61-153 58-154 (352)
20 1dt9_A ERF1, protein (eukaryot 83.0 0.0021 7E-08 63.9 -15.0 108 29-139 34-157 (437)
21 3e20_C Eukaryotic peptide chai 60.4 0.056 1.9E-06 53.7 -10.9 125 17-153 40-174 (441)
22 2ftc_O L27MT, MRP-L27, mitocho 59.3 5.6 0.00019 29.2 2.5 43 125-167 17-60 (69)
23 3v7q_A Probable ribosomal prot 52.9 15 0.00052 28.4 4.2 31 301-331 15-45 (101)
24 3on1_A BH2414 protein; structu 50.3 18 0.0006 27.9 4.2 31 301-331 14-44 (101)
25 2xzm_U Ribosomal protein L7AE 49.8 27 0.00092 28.2 5.5 41 280-331 10-50 (126)
26 3j21_Z 50S ribosomal protein L 49.5 17 0.00059 27.9 4.0 29 302-330 12-40 (99)
27 4a18_G RPL30; ribosome, eukary 46.7 18 0.00063 28.0 3.8 31 301-331 18-48 (104)
28 3v7e_A Ribosome-associated pro 45.5 21 0.00073 26.4 3.9 30 302-331 8-37 (82)
29 1w41_A 50S ribosomal protein L 43.2 24 0.00083 27.0 4.0 29 302-330 13-41 (101)
30 3u5e_c L32, RP73, YL38, 60S ri 39.3 33 0.0011 26.6 4.3 31 301-331 18-48 (105)
31 3cpq_A 50S ribosomal protein L 38.9 30 0.001 27.0 4.0 30 302-331 18-47 (110)
32 3vi6_A 60S ribosomal protein L 38.1 31 0.0011 27.8 4.0 31 301-331 23-53 (125)
33 1vq8_F 50S ribosomal protein L 37.9 31 0.001 27.4 3.9 30 302-331 26-55 (120)
34 2fc3_A 50S ribosomal protein L 36.8 36 0.0012 27.2 4.2 30 302-331 25-54 (124)
35 1rlg_A 50S ribosomal protein L 35.3 36 0.0012 26.9 4.0 30 302-331 24-53 (119)
36 3iz5_f 60S ribosomal protein L 35.2 41 0.0014 26.6 4.3 31 301-331 22-52 (112)
37 1xbi_A 50S ribosomal protein L 34.4 39 0.0013 26.9 4.0 28 304-331 28-55 (120)
38 1nnx_A Protein YGIW; structura 34.0 58 0.002 25.8 4.9 35 71-106 53-87 (109)
39 2lbw_A H/ACA ribonucleoprotein 33.3 41 0.0014 26.8 4.0 32 301-332 16-47 (121)
40 3o85_A Ribosomal protein L7AE; 31.7 49 0.0017 26.4 4.2 31 301-331 27-57 (122)
41 2aif_A Ribosomal protein L7A; 31.5 44 0.0015 27.2 4.0 31 301-331 37-67 (135)
42 2ale_A SNU13, NHP2/L7AE family 28.4 50 0.0017 26.9 3.8 31 301-331 28-58 (134)
43 2nn6_I 3'-5' exoribonuclease C 26.3 79 0.0027 27.6 5.0 63 31-107 76-146 (209)
44 2xsk_A CSGC; chaperone; 1.70A 25.0 1.8E+02 0.006 22.9 6.1 79 13-108 2-83 (110)
45 1qd7_I S17 ribosomal protein; 24.0 1.8E+02 0.0062 22.1 6.0 53 59-111 11-64 (89)
46 3r8s_W 50S ribosomal protein L 23.7 5 0.00017 30.0 -2.9 50 127-176 10-60 (76)
47 2vqe_Q 30S ribosomal protein S 22.5 2.8E+02 0.0095 21.7 7.0 53 59-111 12-65 (105)
48 3v2d_0 50S ribosomal protein L 22.2 7.2 0.00025 29.7 -2.3 50 127-176 19-69 (85)
No 1
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-72 Score=556.02 Aligned_cols=277 Identities=50% Similarity=0.777 Sum_probs=220.1
Q ss_pred CeeeeecccCCCCceeEEEeeCCCcchhhhhhcccCCCEEEEEEEEEEeeccCCCCccceEEEEEEEEEEEEEeecccce
Q psy17307 1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLIAEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQAC 80 (342)
Q Consensus 1 Mk~~~~~~~~~~~~~~v~l~~e~~dDlw~lynli~~gD~v~~~t~Rkv~~~~~~g~~~~~~~~~~l~i~v~~~~f~~~~~ 80 (342)
|||+++.+ .++++|+|+|+||++||||||||||++||.|+|+|+|||++++++|+.++
T Consensus 1 Mkl~~~~~-~~~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~Rkv~~~~~~~~~~~--------------------- 58 (390)
T 3mca_B 1 MKLIQKNI-EKNGSGWITMCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSG--------------------- 58 (390)
T ss_dssp -------C-BCC-CBCCBC---CTHHHHHHHHHCCTTCEEBCCCCCC---------------------------------
T ss_pred Cccccccc-cCCCCceEEEEeCCHHHHHHHHHhcCCCCEEEEEEEEEEEccCCCCCCce---------------------
Confidence 99999999 89999999999999999999999999999999999999998776665444
Q ss_pred EEEEeecCceeeeeeccCCCCeEEEEEeeeeeeccCCCCcccceeeeEEEEEEEEEeeeccccEEEEeceeeeccccccc
Q psy17307 81 VLRLKESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKGRNIQENQYVKM 160 (342)
Q Consensus 81 ~l~~~~~dd~~~~~~li~~Gd~v~~~t~Rkv~~e~~~~~~~~~r~~~~l~i~Ve~~ef~~~~~~lri~G~~~~~~e~v~~ 160 (342)
+|++++|+|+||+++|||+++.||++|+++.+|+++++
T Consensus 59 ------------------------------------------~r~~~~L~i~Ve~ief~~~~~~Lri~G~i~~~~~~vk~ 96 (390)
T 3mca_B 59 ------------------------------------------SRVVMKLRILVENMDFDTKAAQLHIKGRTTEYHPEVKM 96 (390)
T ss_dssp --------------------------------------------------EECCCEEECTTSSCEEEC-CBCSCCC---C
T ss_pred ------------------------------------------EEEEEEEEEEEEEEEecCCCCEEEEEEEEecCCccccc
Confidence 44557888888888889999999999999999999999
Q ss_pred cceEEEEeecCceeEEEecCCChhhHHHHHHHhcccCCCcEEEEEEeCCeEEEEEEeCCeEEEEEEEEeecCCcccC-cc
Q psy17307 161 GAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRD-NK 239 (342)
Q Consensus 161 G~~HTl~i~~~~~~~i~K~~W~~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~~~~~~i~~~ip~K~~~-~~ 239 (342)
|+|||++|+||+||+|+|+||++|++++|++|++++.++++++|+||+|+|+||+|+++++++++++++++|+|+++ ++
T Consensus 97 G~~HTl~ie~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~~~~~~i~~~iPkK~~~gg~ 176 (390)
T 3mca_B 97 GSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNPSRNAEIGAVVLDEGLANICLITDYMTILRQRIDQVIPRKRRGDSS 176 (390)
T ss_dssp CSCCCCCCCSSSCCBCC-CCCCHHHHHHHTTSSSCC--CCEEEEEEETTEEEEEEECSSCEEEEEEEECCCCCCBTTBCH
T ss_pred cceEEEEEecCCcEEEEEcCCCHHHHHHHHHHhcccccCcEEEEEEECCcEEEEEEcCCEEEEEEEEEEeCCCcCCCCch
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999863 22
Q ss_pred -----------------------ccccee--eCCcchHHHHhhcc---------HHHHhcCCcEEEEecCCcchhHHHHH
Q psy17307 240 -----------------------DLLKEL--LSPITTVEAVKMDN---------KVLLENKSKFLLVHSSSAFKHSLKEI 285 (342)
Q Consensus 240 -----------------------~~~k~V--agPG~~k~~~~~~~---------~~~~~~k~k~v~~~~S~g~~~gL~Ev 285 (342)
..+++| |||||+++.|.+.+ +.+++++++|+++|+|+||++||+|+
T Consensus 177 ~~~~~~~~F~~~V~e~l~~~~d~~~v~~iIlaGPgf~K~~f~~~L~~~~~~~~~k~l~~~~~k~~vv~~s~gg~~gl~Ev 256 (390)
T 3mca_B 177 AYQKGLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKFVILHSSTGHIHSLNEI 256 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESSSHHHHHHHHHHHHHHHTTCHHHHHHGGGEEEEECSCSSGGGGGTS
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECChHHHHHHHHHHHHHHhhccchhhhhhcCeEEEEEcCCCcchhHHHH
Confidence 124565 99999988776432 33445678999999999999999999
Q ss_pred hcChhhhhhhhcccc---------------CCCCeEEEcHHHHHHHHHcCCccEEEEecCCCCCCCchhhc
Q psy17307 286 LADPTVTSKMQDTKA---------------LDPSRAFYGYRHVSAANESQAIDTLLIADCLFRNSDLNERK 341 (342)
Q Consensus 286 L~~~~v~~~l~d~k~---------------~d~~~a~YG~~eV~~A~e~GAVetLLIsD~l~r~~d~~~Rk 341 (342)
|++|+++++|+++++ +|+++||||+++|.+|+++|||++|||+|++||++|+++|+
T Consensus 257 l~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLI~d~l~r~~d~~~r~ 327 (390)
T 3mca_B 257 LKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGELLISDSLFRSSDIATRK 327 (390)
T ss_dssp SSCHHHHHHHTTSHHHHHHHHHHHHHHHHHHCTTSEEESHHHHHHHHHTTCBSSCEEEETTCCCSCHHHHH
T ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCCeEEEEecccccCCChhHHH
Confidence 999999999999986 78999999999999999999999999999999999988775
No 2
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=100.00 E-value=3.6e-66 Score=510.67 Aligned_cols=274 Identities=31% Similarity=0.531 Sum_probs=232.0
Q ss_pred Ceeeeec---ccCCCCceeEEEeeCCCcchhhhhhcccCCCEEEEEEEEEEeeccCCCCccceEEEEEEEEEEEEEeecc
Q psy17307 1 MKLVHKN---INDKDKSGVVALVPEESEDMWHAYNLIAEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDT 77 (342)
Q Consensus 1 Mk~~~~~---~~~~~~~~~v~l~~e~~dDlw~lynli~~gD~v~~~t~Rkv~~~~~~g~~~~~~~~~~l~i~v~~~~f~~ 77 (342)
|||+++. + ++ ++|.|+|+||++||||||||||++||.|+|+|+|||+. +.+|+ +
T Consensus 1 Mki~~~~~~~~-~~-~~g~v~l~pE~~dDlw~lynli~~gD~v~~~T~Rkv~~-~~~g~-~------------------- 57 (386)
T 2vgn_A 1 MKVISLKKDSF-NK-GGAVITLLPEDKEDLFTVYQIVDKDDELIFKKKFTSKL-DEAGK-K------------------- 57 (386)
T ss_dssp CEEEEEEECSS-CT-TCEEEEEECCSHHHHHHHHTTCCTTCEEEEEECC-------------------------------
T ss_pred Ceeeeeccccc-cC-CCceEEEEECCHHHHHHHHHhcCCCCEEEEEEEEEEec-cCCCC-c-------------------
Confidence 9999999 7 77 88999999999999999999999999999999999987 55553 3
Q ss_pred cceEEEEeecCceeeeeeccCCCCeEEEEEeeeeeeccCCCCcccceeeeEEEEEEEEEeeeccccEEEEeceeeecccc
Q psy17307 78 QACVLRLKESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKGRNIQENQY 157 (342)
Q Consensus 78 ~~~~l~~~~~dd~~~~~~li~~Gd~v~~~t~Rkv~~e~~~~~~~~~r~~~~l~i~Ve~~ef~~~~~~lri~G~~~~~~e~ 157 (342)
++|++++|+|+||+++|+++++.||++|+++.+|++
T Consensus 58 --------------------------------------------~~r~~~~L~i~Ve~~~f~~~~~~lri~G~i~~~~~~ 93 (386)
T 2vgn_A 58 --------------------------------------------KSTDLVKLKIKVISEDFDMKDEYLKYKGVTVTDESG 93 (386)
T ss_dssp -----------------------------------------------CCEEEEEEEEEEEEETTTTEEEEEEEECCCTTS
T ss_pred --------------------------------------------eEEEEEEEEEEEEEEEecCCCCEEEEEEEEEccCCc
Confidence 455668889999999999999999999999999998
Q ss_pred -----ccccceEEEEeecCceeEEEecCCChhhHHHHHHHhcccCCCcEEEEEEeCCeEEEEEEeCCeEEEEEEEEeecC
Q psy17307 158 -----VKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIP 232 (342)
Q Consensus 158 -----v~~G~~HTl~i~~~~~~~i~K~~W~~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~~~~~~i~~~ip 232 (342)
|++|+|||++|+||+||+++|++|++|++++|++|++++.++.+++|+||+|.|+||+++++++++++++++++|
T Consensus 94 ~~~~~vk~g~~hT~~iep~~~i~i~k~~w~~f~~e~L~~a~~~~~~~~~~~vv~d~~~A~i~~l~~~~~~~~~~i~~~iP 173 (386)
T 2vgn_A 94 ASNVDIPVGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEACNIEYKSDTAAVVLQEGIAHVCLVTSSSTILKQKIEYSMP 173 (386)
T ss_dssp SSSTTCCTTCEEEEECCSSSCEEEEESCCCHHHHHHHHHTTCTTTTTCEEEEEEETTEEEEEEECSSCEEEEEEEEC---
T ss_pred cccccccCccEEEEEEeCCCeEEEEEccCChhhHHHHHHHhccccCCCEEEEEEECCcEEEEEEECCEEEEEEEEEecCC
Confidence 899999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred CcccCcc-------------------------ccccee--eCCcchHHHHhh---------ccHHHHhcCCcEEEEecCC
Q psy17307 233 RKRRDNK-------------------------DLLKEL--LSPITTVEAVKM---------DNKVLLENKSKFLLVHSSS 276 (342)
Q Consensus 233 ~K~~~~~-------------------------~~~k~V--agPG~~k~~~~~---------~~~~~~~~k~k~v~~~~S~ 276 (342)
+|+++++ ..+++| ||||++++.|.+ +++.+++++++|+++|+|+
T Consensus 174 ~K~~~g~~s~~~~~~~~F~~~V~~~l~~~~~~~~v~~lIlaGPg~~k~~f~~~l~~~~~~~~~~~~~~~~~ki~vv~~s~ 253 (386)
T 2vgn_A 174 KKKRTTDVLKFDEKTEKFYKAIYSAMKKDLNFDKLKTIILCSPGFYAKILMDKIFQYAEEEHNKKILDNKGMFFIAHCST 253 (386)
T ss_dssp ------CCSSCCHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESTTHHHHHHHHHHHHHHHTTCHHHHTTGGGEEEEECSC
T ss_pred CCccCCCcchHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECCHHHHHHHHHHHHHHhhhhccchhhhccCcEEEEECCC
Confidence 9986431 124555 999988877753 2344556678999999999
Q ss_pred cchhHHHHHhcChhhhhhhhcccc---------------CCCCeEEEcHHHHHHHHHcCCccEEEEecCCCCCCCchhhc
Q psy17307 277 AFKHSLKEILADPTVTSKMQDTKA---------------LDPSRAFYGYRHVSAANESQAIDTLLIADCLFRNSDLNERK 341 (342)
Q Consensus 277 g~~~gL~EvL~~~~v~~~l~d~k~---------------~d~~~a~YG~~eV~~A~e~GAVetLLIsD~l~r~~d~~~Rk 341 (342)
++.+|++|+|++|+++++|+++++ +|++++|||+++|.+|+++|||++|||+|+++|++|++.|+
T Consensus 254 ~~~~gl~Evl~~~~v~~~L~d~k~~~E~~~l~~f~~~l~~d~~~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~~~r~ 333 (386)
T 2vgn_A 254 GYLQGINEVLKNPLYASKLQDTKYSKEIMVMDEFLLHLNKDDDKAWYGEKEVVKAAEYGAISYLLLTDKVLHSDNIAQRE 333 (386)
T ss_dssp SSTHHHHHHHHCGGGHHHHHHHHTHHHHHHHHHHHHHHTTTCSSEEESHHHHHHHHHTTCEEEEEEETTGGGSSCHHHHH
T ss_pred CccccHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHcCCcEEEEEechhhcCCCchhhh
Confidence 999999999999999999999986 78899999999999999999999999999999999987774
No 3
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=9.4e-68 Score=517.16 Aligned_cols=267 Identities=25% Similarity=0.389 Sum_probs=238.2
Q ss_pred CeeeeecccCCCCceeEEEeeCCCcchhhhhhcccCCCEEEEEEEEEEeeccCCCCccceEEEEEEEEEEEEEeecccce
Q psy17307 1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLIAEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQAC 80 (342)
Q Consensus 1 Mk~~~~~~~~~~~~~~v~l~~e~~dDlw~lynli~~gD~v~~~t~Rkv~~~~~~g~~~~~~~~~~l~i~v~~~~f~~~~~ 80 (342)
|||++++. ++|.|+|+||++||||||||||++||.|+|+|+|||+.++.++
T Consensus 1 Mki~~~~~----~~g~v~l~pE~~dDlw~ly~li~~gD~v~a~T~Rkv~~~~~~~------------------------- 51 (357)
T 3j15_A 1 MEILEEKP----KEGKVKVKAETLDDLWHLYHIIDPGDIVYAKTLRKQAQRADSL------------------------- 51 (357)
T ss_dssp CCCEECST----TSSSEECCCCSHHHHHHHHHHCCSSCEEECCCCCCCCCCCSSS-------------------------
T ss_pred CceeEecC----CCceEEEEECChHHHHHHHHhCCCCCEEEEEEEEEEEcCCCCc-------------------------
Confidence 99999884 8899999999999999999999999999999999998765442
Q ss_pred EEEEeecCceeeeeeccCCCCeEEEEEeeeeeeccCCCCcccceeeeEEEEEEEEEeeeccccEEEEeceeeecc-cccc
Q psy17307 81 VLRLKESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKGRNIQEN-QYVK 159 (342)
Q Consensus 81 ~l~~~~~dd~~~~~~li~~Gd~v~~~t~Rkv~~e~~~~~~~~~r~~~~l~i~Ve~~ef~~~~~~lri~G~~~~~~-e~v~ 159 (342)
++..++|++++|+|+||++|||+++++||++|+++.+| ++|+
T Consensus 52 -------------------------------------~~~~~~r~~~~l~i~Ve~~ef~~~~~~Lri~G~i~~~~~~~v~ 94 (357)
T 3j15_A 52 -------------------------------------RAEKVEVIPVFLGVQAEKINFHKFANQVRVTGPIVYASREDVP 94 (357)
T ss_dssp -------------------------------------CCCCCCCCCCCCEEECSCEEEETTTTEEEECCBEEECCCSSCC
T ss_pred -------------------------------------CCCccEEEEEEEEEEEEEEEecCCCCEEEEEEEEEeccccccc
Confidence 12235677789999999999999999999999999988 9999
Q ss_pred ccceEEEEeecCceeEEEecCCChhhHHHHHHHhcccCCCcEEEEEEeCCeEEEEEEeCCeEEEEEEEEeecCCcccCcc
Q psy17307 160 MGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRDNK 239 (342)
Q Consensus 160 ~G~~HTl~i~~~~~~~i~K~~W~~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~~~~~~i~~~ip~K~~~~~ 239 (342)
+|+|||++|+||+||+++|++|++|++++|++||+++.++.+++|+||+|+|+||+|+++++++++++++++|||+++..
T Consensus 95 ~G~~hT~~ie~~~~i~i~k~~w~~~~~e~L~ea~~~~~~~~~~~Vv~d~g~A~i~~l~~~~~~~~~~i~~~ipkK~~~~~ 174 (357)
T 3j15_A 95 LGKYHTIAIEQGTVVTIQKPRWKEHHIERLKEAVAASKRARVMIVVIDDGEADMALVREYGVEILNSIRHNLGGKRYNTD 174 (357)
T ss_dssp CSSBCCEEECSSCCEEECTTCCCHHHHHHHHHSCSSCCCSCCCEEEECSSCEEEEEEETTEEEEEECCCCCSCSSSSSCC
T ss_pred cccEEEEEecCCCeEEEEEecCCHHHHHHHHHHHhccccCcEEEEEEECCcEEEEEEeCCEEEEEEEEEecCCCCcccch
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999976211
Q ss_pred ----------------------ccccee--eCCcchHHHHhhccHHHH-hcCCcEEEEecCCcchhHHHHHhcChhhhhh
Q psy17307 240 ----------------------DLLKEL--LSPITTVEAVKMDNKVLL-ENKSKFLLVHSSSAFKHSLKEILADPTVTSK 294 (342)
Q Consensus 240 ----------------------~~~k~V--agPG~~k~~~~~~~~~~~-~~k~k~v~~~~S~g~~~gL~EvL~~~~v~~~ 294 (342)
..+++| ||||++++.|.+-+.... +.+++|+++|+|+||.+||+|+|++|+++++
T Consensus 175 ~e~~~~~f~~~Vae~~~~~~~~~~v~~iilaGPg~~k~~f~~~l~~~~~~l~~kvv~v~~s~g~~~gl~Evl~~~~v~~~ 254 (357)
T 3j15_A 175 RESEEMKFFHDVAKTMEEVMKRENVEKAIVAGPGFVKEDFYKFLKEKYPELAKKVVIEDTSVTGRTGIYEVIKRGVVDRV 254 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCCCCEECCSTTHHHHHHHHHHHHSCCSSCEECCCCCSCCHHHHHHHHHHTCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCEEEEECChHHHHHHHHHHHHhhHHhhCeEEEEeCCCCchhhHHHHHhChhHHHH
Confidence 124554 999999998865322211 3467899999999999999999999999999
Q ss_pred hhcccc---------------CCCCeEEEcHHHHHHHHHcCCccEEEEecCCCC
Q psy17307 295 MQDTKA---------------LDPSRAFYGYRHVSAANESQAIDTLLIADCLFR 333 (342)
Q Consensus 295 l~d~k~---------------~d~~~a~YG~~eV~~A~e~GAVetLLIsD~l~r 333 (342)
|+++++ +|+++||||+++|.+|+++|||++|||+|+++|
T Consensus 255 l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r 308 (357)
T 3j15_A 255 YQENRVAKEVQLVEKVLENIARNNGLVAYGLKEVEEAVNYGAVETLLVLDELLK 308 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTTEEESTHHHHHHHHHTCEEEEEEEHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHhCCCcEEEEeccccc
Confidence 999986 788999999999999999999999999999999
No 4
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.6e-66 Score=506.75 Aligned_cols=264 Identities=25% Similarity=0.332 Sum_probs=216.9
Q ss_pred CeeeeecccCCCCceeEEEeeCCCcchhhhhhcccCCCEEEEEEEEEEeeccCCCCccceEEEEEEEEEEEEEeecccce
Q psy17307 1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLIAEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQAC 80 (342)
Q Consensus 1 Mk~~~~~~~~~~~~~~v~l~~e~~dDlw~lynli~~gD~v~~~t~Rkv~~~~~~g~~~~~~~~~~l~i~v~~~~f~~~~~ 80 (342)
|||+++. .++++|.|+|+||++||||||||||++||.|+|+| |||+.++++|+.
T Consensus 1 Mki~~~~--~~~~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T-Rkv~~~~~~~~~----------------------- 54 (352)
T 3oby_A 1 MQIVEEN--LRDNEGEIKLIPETLDDLWHLRFIIEKGDVVFATT-KRASQSSDKLRS----------------------- 54 (352)
T ss_dssp CEEEEEC--CBTTEEEEEEECCSHHHHHHHHHHSCTTCEEEECC-C----------------------------------
T ss_pred Cceeeec--cCCCceeEEEEeCChHHHHHHHHhccCCCEEEEEE-EEEeccCCCCCc-----------------------
Confidence 9999999 47899999999999999999999999999999999 999876555411
Q ss_pred EEEEeecCceeeeeeccCCCCeEEEEEeeeeeeccCCCCcccceeeeEEEEEEEEEeeeccccEEEEeceeeeccccccc
Q psy17307 81 VLRLKESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKGRNIQENQYVKM 160 (342)
Q Consensus 81 ~l~~~~~dd~~~~~~li~~Gd~v~~~t~Rkv~~e~~~~~~~~~r~~~~l~i~Ve~~ef~~~~~~lri~G~~~~~~e~v~~ 160 (342)
+++|++++|+|+||++|||+++++||++|+++.+|++
T Consensus 55 ----------------------------------------~~er~~~~L~i~Ve~ief~~~~~~Lri~G~i~~~~~~--- 91 (352)
T 3oby_A 55 ----------------------------------------DKEMVTVRLGIEVEKVEFHRFANRLRVSGKIVAGIEE--- 91 (352)
T ss_dssp --------------------------------------------CCCCEEEEEEEEEECSSSSCEEEEEEEEEC------
T ss_pred ----------------------------------------ceEEEEEEEEEEEEEEEecCCCCEEEEEEEEEecCCC---
Confidence 1356778999999999999999999999999999986
Q ss_pred cceEEEEeecCceeEEEecCCChhhHHHHHHHhcccCCCcEEEEEEeCCeEEEEEEeCCeEEEEEEEEeecCCccc----
Q psy17307 161 GAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRR---- 236 (342)
Q Consensus 161 G~~HTl~i~~~~~~~i~K~~W~~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~~~~~~i~~~ip~K~~---- 236 (342)
|+|||++|+||+||+++| ||++|++++|++|++++.++.+++|+||+|+|+||+|+++++++++++++++|+|+.
T Consensus 92 G~~hT~~iep~~~i~i~k-~w~~~~~e~L~ea~~~~~~~~~~~vv~d~g~A~i~~l~~~~~~~~~~i~~~ipkK~g~~r~ 170 (352)
T 3oby_A 92 SGYHTLNITVGKELSIIK-KWKPEQLERLRRAVEDSNRPEIVMLTIEEGYAVAGVLRQWGVEEIFEERMGYGKGMGDSRK 170 (352)
T ss_dssp -CEEEEEECTTCCEEEEE-ECCHHHHHHHHHHHTTSCCCCEEEEEEETTEEEEEEEETTEEEEEEEEEC--------CCC
T ss_pred CeEEEEEEeCCCeEEEEE-cCCHHHHHHHHHHhhccccCcEEEEEEECCcEEEEEEeCCEEEEEEEEeccCCCccchhHH
Confidence 999999999999999999 999999999999999888899999999999999999999999999999999999863
Q ss_pred Ccc--------c-cccee--eCCcchHHHHhhccHHH-HhcCCcEEEEecCCcchhHHHHHhcChhhhhhhhcccc----
Q psy17307 237 DNK--------D-LLKEL--LSPITTVEAVKMDNKVL-LENKSKFLLVHSSSAFKHSLKEILADPTVTSKMQDTKA---- 300 (342)
Q Consensus 237 ~~~--------~-~~k~V--agPG~~k~~~~~~~~~~-~~~k~k~v~~~~S~g~~~gL~EvL~~~~v~~~l~d~k~---- 300 (342)
.|. + .+++| |||||+++.|.+.+... .+.+++|+++|+|+||++||+|+|++|+++++|+++|+
T Consensus 171 ~F~~~V~e~~~~~~v~~iIlaGPg~~K~~f~~~l~~~~~~l~~kvv~v~~s~gg~~gl~Evl~~~~v~~~L~~~k~~~E~ 250 (352)
T 3oby_A 171 EFFGEVAAKLESFDFKYLIVAGPGFAKNDFLDFLKERYPEMAKNAVVVDVSSVGSRGFIEILKRRVVDKIVGEVRLAEEA 250 (352)
T ss_dssp CHHHHHHHHHHHHCCSEEEEECSTTHHHHHHHHHHHHCHHHHTTEEECCCCCCHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHHHhhCcEEEEECCCCchhhHHHHHhChhHHHHHHHHHHHHHH
Confidence 111 1 14555 99999999887632221 12356899999999999999999999999999999986
Q ss_pred -----------CCCCeEEEcHHHHHHHHHcCCccEEEEecCCCCCC
Q psy17307 301 -----------LDPSRAFYGYRHVSAANESQAIDTLLIADCLFRNS 335 (342)
Q Consensus 301 -----------~d~~~a~YG~~eV~~A~e~GAVetLLIsD~l~r~~ 335 (342)
+| ++||||+++|.+|+++|||++|||+|+++|+.
T Consensus 251 ~~le~f~~~l~~d-~~a~YG~~eV~~Ale~GAVetLLIsd~l~r~~ 295 (352)
T 3oby_A 251 EYIDRLLEGIAKG-ERVAYGLDEVREAHNYRAIEVLLVADEFLLEE 295 (352)
T ss_dssp HHHHHHHHHHHHT-CSEEESHHHHHHHHTTTCEEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHhcC-CcEEECHHHHHHHHHcCCceEEEEeccchhcc
Confidence 66 99999999999999999999999999999853
No 5
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.2e-66 Score=505.33 Aligned_cols=265 Identities=22% Similarity=0.307 Sum_probs=215.1
Q ss_pred CeeeeecccCCCCceeEEEeeCCCcchhhhhhcccCCCEEEEEEEEEEeeccCCCCccceEEEEEEEEEEEEEeecccce
Q psy17307 1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLIAEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQAC 80 (342)
Q Consensus 1 Mk~~~~~~~~~~~~~~v~l~~e~~dDlw~lynli~~gD~v~~~t~Rkv~~~~~~g~~~~~~~~~~l~i~v~~~~f~~~~~ 80 (342)
|||++++. ++|.|+|+||++||||||||||++||.|+|+|+|+|+. |+
T Consensus 21 Mki~~~~~----~~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~Rkv~~----~~------------------------ 68 (364)
T 3obw_A 21 MRILEFDE----KRQAVKLHIESEDDLWLLHLILEKDDKVVAKTTRDVGL----GK------------------------ 68 (364)
T ss_dssp ------CC----CCCCEEEECCSHHHHHHHHHHCCTTCEEEEEEEEECC-------------------------------
T ss_pred cEEEEecC----CCceEEEEeCCHHHHHHHHHhccCCCEEEEEEEEEEEc----CC------------------------
Confidence 99999875 88999999999999999999999999999999999974 11
Q ss_pred EEEEeecCceeeeeeccCCCCeEEEEEeeeeeeccCCCCcccceeeeEEEEEEEEEeeeccccEEEEeceeeecc-cccc
Q psy17307 81 VLRLKESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKGRNIQEN-QYVK 159 (342)
Q Consensus 81 ~l~~~~~dd~~~~~~li~~Gd~v~~~t~Rkv~~e~~~~~~~~~r~~~~l~i~Ve~~ef~~~~~~lri~G~~~~~~-e~v~ 159 (342)
.++|++++|+|+||++|||+++++||++|+++.++ ++++
T Consensus 69 ----------------------------------------~~~r~~~~L~i~Ve~ief~~~~~~Lri~G~iv~~~~~~v~ 108 (364)
T 3obw_A 69 ----------------------------------------ESRRIPMTIILKVDYTEFQEFTNRLRIHGIIEDAPERFGI 108 (364)
T ss_dssp ----------------------------------------CCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEECCGGGCC
T ss_pred ----------------------------------------ceEEEEEEEEEEEEEEEecCCCCEEEEEEEEEeccccccc
Confidence 23566688888899999999999999999999855 8999
Q ss_pred ccceEEEEeecCceeEEEecCCChhhHHHHHHHhcccCCCcEEEEEEeCCeEEEEEEeCCeEEEEEEEEeecCCcccC--
Q psy17307 160 MGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRD-- 237 (342)
Q Consensus 160 ~G~~HTl~i~~~~~~~i~K~~W~~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~~~~~~i~~~ip~K~~~-- 237 (342)
+|+|||++|+||+||+++|++|++|++++|++|++. ++.+++|+||+|+|+||+|+++++++++++++++|+|++.
T Consensus 109 ~G~~HT~~ie~~~~i~i~K~~w~~~~le~L~e~~~~--~~~~~~vv~d~g~A~i~~l~~~~~~~~~~i~~~iPkK~~~~~ 186 (364)
T 3obw_A 109 KGAHHTINLDIGDEIIIIKQQWNKYVLDRLKRQANK--RSRIIIALVDFDEYLIAIPFEQGIKILSEKSLRPLNEEEGII 186 (364)
T ss_dssp TTCEEEEEECTTCEEEEECSCC----------------CCCEEEEEEETTEEEEEEECSSCEECCCEEECGGGCSSTTHH
T ss_pred cceEEEEEEcCCCeEEEEEccCCHHHHHHHHHHhCc--CCCEEEEEEECCcEEEEEEeCCEEEEEEEEEeeCccchhHHH
Confidence 999999999999999999999999999999999985 6699999999999999999999999999999999999753
Q ss_pred --cc-------------ccccee--eCCcchHHHHhhccHHHHhcCCcEEEEecCCcchhHHHHHhcChhhhhhhhcccc
Q psy17307 238 --NK-------------DLLKEL--LSPITTVEAVKMDNKVLLENKSKFLLVHSSSAFKHSLKEILADPTVTSKMQDTKA 300 (342)
Q Consensus 238 --~~-------------~~~k~V--agPG~~k~~~~~~~~~~~~~k~k~v~~~~S~g~~~gL~EvL~~~~v~~~l~d~k~ 300 (342)
|. ..+++| ||||++++.|.+-+...+. +.++.++|+|+||++||+|+|++|+++++|+++++
T Consensus 187 ~~f~~~V~e~~~~~~~~~~v~~iIlaGPg~~K~~f~~~l~~~~~-~~~i~~vd~s~g~~~gl~Evl~~~~v~~~l~~~k~ 265 (364)
T 3obw_A 187 EQNALEIATELAEYVKQYDPDAILLAGPGFFKEEVSKKVNAILK-NKKIYIDSVSSATRAGLHEVLKRDIIDKIMTDYEI 265 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSEEEEECSSSHHHHHHHHHHTTTC-CSEEEEECCSCSSHHHHHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCEEEEECChHHHHHHHHHHHHHhh-cCeEEEEeCCCCchHhHHHHHhchHHHHHHHHHHH
Confidence 11 225565 9999999988663322222 34688999999999999999999999999999986
Q ss_pred ---------------CCCCeEEEcHHHHHHHHHcCCccEEEEecCCCCCCCchhhc
Q psy17307 301 ---------------LDPSRAFYGYRHVSAANESQAIDTLLIADCLFRNSDLNERK 341 (342)
Q Consensus 301 ---------------~d~~~a~YG~~eV~~A~e~GAVetLLIsD~l~r~~d~~~Rk 341 (342)
+|+++||||+++|.+|+++|||++|||+|+++|+.|+ +|+
T Consensus 266 ~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~-~r~ 320 (364)
T 3obw_A 266 AIGAKKMEKAMELLAKQPELVTYGLEQVKNAIEMGAVETVLVIEDLLSSDEQ-ERL 320 (364)
T ss_dssp HHHHHHHHHHHHHHTTSCSSEEESHHHHHHHHHHTCEEEEEEEGGGGSSCHH-HHH
T ss_pred HHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCCcEEEEeccCcccccc-hHH
Confidence 7889999999999999999999999999999999877 553
No 6
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=100.00 E-value=6.1e-63 Score=483.47 Aligned_cols=265 Identities=22% Similarity=0.289 Sum_probs=233.6
Q ss_pred CeeeeecccCCCCceeEEEeeCCCcchhhhhhcccCCCEEEEEEEEEEeeccCCCCccceEEEEEEEEEEEEEeecccce
Q psy17307 1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLIAEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQAC 80 (342)
Q Consensus 1 Mk~~~~~~~~~~~~~~v~l~~e~~dDlw~lynli~~gD~v~~~t~Rkv~~~~~~g~~~~~~~~~~l~i~v~~~~f~~~~~ 80 (342)
|||+++++ ++|.|+|+||++||||||||||++||.|+|+|.|||++ |+.+++
T Consensus 3 Mki~~~~~----~~g~v~l~pe~~dDlw~ly~li~~gD~v~~~t~R~v~~----g~~~~~-------------------- 54 (358)
T 3agj_B 3 MRVEVLDN----KRRIVRLRPESEEDLWLLRITLRPGDVVRKRTSRDVPV----GSGRKE-------------------- 54 (358)
T ss_dssp CEEEECSS----SSCEEEEECCSHHHHHHHHHHCCTTCEEEEEEEEEECC----SSSCCE--------------------
T ss_pred CEEEEeec----cCCEEEEEECCHHHHHHHHHhCCCCCEEEEEEEEEEec----CCCccE--------------------
Confidence 99999998 38999999999999999999999999999999999976 433344
Q ss_pred EEEEeecCceeeeeeccCCCCeEEEEEeeeeeeccCCCCcccceeeeEEEEEEEEEeeeccccEEEEeceeeecc-cccc
Q psy17307 81 VLRLKESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKGRNIQEN-QYVK 159 (342)
Q Consensus 81 ~l~~~~~dd~~~~~~li~~Gd~v~~~t~Rkv~~e~~~~~~~~~r~~~~l~i~Ve~~ef~~~~~~lri~G~~~~~~-e~v~ 159 (342)
|++++|+|+||+++||++++.||++|+++.+| +||+
T Consensus 55 -------------------------------------------r~~~~l~i~Ve~~~f~~~~~~Lri~G~i~~~~~~~v~ 91 (358)
T 3agj_B 55 -------------------------------------------RVVMTLRIRLDSIEFQPFTGKLRISGIVVEGPDEFGV 91 (358)
T ss_dssp -------------------------------------------EEEEEEEEEEEEEEECTTSCEEEEEEEEEECCGGGCC
T ss_pred -------------------------------------------EEEEEEEEEEEEEEcCCCCCEEEEEEEEccCCCcccc
Confidence 44577778888888888889999999999988 8999
Q ss_pred ccceEEEEeecCceeEEEecC-CChhhHHHHHHHhcccCCCcEEEEEEeCCeEEEEEEeCCeEEEEEEEEeecCCcccCc
Q psy17307 160 MGAYHTLDLELNRKFELSKPE-WDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRDN 238 (342)
Q Consensus 160 ~G~~HTl~i~~~~~~~i~K~~-W~~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~~~~~~i~~~ip~K~~~~ 238 (342)
+|+|||++|+||+||+|+|++ |++|++++|++| +.++.+++|+||+|+|+||++++++++++++++.++|+|+ ++
T Consensus 92 ~g~~ht~~ie~~~~i~i~k~~~w~~~~le~L~~~---~~~~~~~~vvvd~~~A~i~~l~~~~~~~~~~i~~~vpkK~-g~ 167 (358)
T 3agj_B 92 KGRRHSTAVSIGTWLVVERDKGWSEQELERLAAG---RARGTAVIAAVDYDEFALAVLAGHGMKILEDTSARLPGKD-DP 167 (358)
T ss_dssp TTSEEEEEEETTCCEEEECTTCCCHHHHHHHHHC---CCCCEEEEEEECSSEEEEEEEESSCEEEEEEEECCCCCTT-ST
T ss_pred cccEEEEEEeCCCcEEEEEecCCCHhhHHHHHhh---CcCCCEEEEEEECCcEEEEEEeCCEEEEEEEEEecCCCCC-ch
Confidence 999999999999999999986 999999999999 4577999999999999999999999999999999999998 43
Q ss_pred c----------------------ccccee--eCCcchHHHHhhccHHHHhcCCcEEEEecCCcchhHHHHHhcChhhhhh
Q psy17307 239 K----------------------DLLKEL--LSPITTVEAVKMDNKVLLENKSKFLLVHSSSAFKHSLKEILADPTVTSK 294 (342)
Q Consensus 239 ~----------------------~~~k~V--agPG~~k~~~~~~~~~~~~~k~k~v~~~~S~g~~~gL~EvL~~~~v~~~ 294 (342)
+ ..+++| ||||++++.|.+.+...+..+ +|.++++|+||++|++|+|++++++++
T Consensus 168 q~e~~~~~f~~~Va~~l~~~~~~~~~~~lIlAGpg~~k~~f~~~L~~~~~~~-~i~~v~~s~g~~~gl~E~l~~~~v~~~ 246 (358)
T 3agj_B 168 SREQEVEKYVDRAAKRIVEEAARHRSPIAVIAGPGQLKTSVAEKVQRAMPSL-KVATVDTSMGGVAGVREALRRESVTRI 246 (358)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEESSSHHHHHHHHHHHHSTTS-EEEEEECSCCHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECCHHHHHHHHHHHHHHhhhc-eEEEEEcCCCCchhHHHHHhChhHHHH
Confidence 2 113454 999999998865433333332 677999999999999999999999999
Q ss_pred hhcccc---------------CCCCeEEEcHHHHHHHHHcCCccEEEEecCCCCCCCchhhc
Q psy17307 295 MQDTKA---------------LDPSRAFYGYRHVSAANESQAIDTLLIADCLFRNSDLNERK 341 (342)
Q Consensus 295 l~d~k~---------------~d~~~a~YG~~eV~~A~e~GAVetLLIsD~l~r~~d~~~Rk 341 (342)
|+++++ +|+++||||+++|.+|+++|||+||||+|+++|++|++.|+
T Consensus 247 l~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GAVetLLV~d~l~r~~d~~~r~ 308 (358)
T 3agj_B 247 LRELSIVEAEGVLEEFLRRIAKSRDTVAYTPGEVLAVARMGAVDTVLLVDTLLHSPDDAVRE 308 (358)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHCGGGEEESHHHHHHHHHHTCEEEEEEEHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCceEEEEecccccCCChhhHH
Confidence 999986 78899999999999999999999999999999998877664
No 7
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=100.00 E-value=3.1e-62 Score=476.28 Aligned_cols=260 Identities=20% Similarity=0.318 Sum_probs=209.4
Q ss_pred CeeeeecccCCCCceeEEEeeCCCcchhhhhhcccCCCEEEEEEEEEEeecc-CCCCccceEEEEEEEEEEEEEeecccc
Q psy17307 1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLIAEGDSVRASTIRKVQSES-NTGSSTSSRVRTMLTISVESIDFDTQA 79 (342)
Q Consensus 1 Mk~~~~~~~~~~~~~~v~l~~e~~dDlw~lynli~~gD~v~~~t~Rkv~~~~-~~g~~~~~~~~~~l~i~v~~~~f~~~~ 79 (342)
|||+++++ ++|.|+|+||++||||||||||++||.|+|+|.|||++++ .+|+.+++
T Consensus 1 Mki~~~~~----~~g~v~l~pE~~dDlw~lynli~~GD~v~a~T~Rkv~~~~~~~g~~~~e------------------- 57 (347)
T 2qi2_A 1 MRILEEDL----KNSTYRIRIESLDDLWYLRNILSEGDEVSAITFRRVEESADVQRSRERE------------------- 57 (347)
T ss_dssp CEEEEEET----TTTEEEEECCSSHHHHHHHHHCCTTCEEEEEEC-------------CCE-------------------
T ss_pred CceeEeec----cCcEEEEEECCHHHHHHHHHhCCCCCEEEEEEEEEEecccccCCCCccE-------------------
Confidence 99999998 3899999999999999999999999999999999998754 44444444
Q ss_pred eEEEEeecCceeeeeeccCCCCeEEEEEeeeeeeccCCCCcccceeeeEEEEEEEEEeeeccccEEEEeceeeecccccc
Q psy17307 80 CVLRLKESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKGRNIQENQYVK 159 (342)
Q Consensus 80 ~~l~~~~~dd~~~~~~li~~Gd~v~~~t~Rkv~~e~~~~~~~~~r~~~~l~i~Ve~~ef~~~~~~lri~G~~~~~~e~v~ 159 (342)
|++++|+|+||+++||+++++||++|.++.++++ +
T Consensus 58 --------------------------------------------r~~~~l~i~Ve~v~f~~~~~~Lri~G~vv~~~~~-~ 92 (347)
T 2qi2_A 58 --------------------------------------------RIPITIRLKVEKIEFQDFDNRLRILGTVIEGPED-T 92 (347)
T ss_dssp --------------------------------------------EEEEEEEEEECCTTCSCEEEEEEECC----------
T ss_pred --------------------------------------------EEEEEEEEEEEEEEccCCCCEEecceEEEEcCCC-C
Confidence 4557777777778888888899999999988887 7
Q ss_pred ccceEEEEeecCceeEEEecCCChhhHHHHHHHhcccCCCcEEEEEEeCCeEEEEEEeCCeEEEEEEEEeecCCcccCc-
Q psy17307 160 MGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRDN- 238 (342)
Q Consensus 160 ~G~~HTl~i~~~~~~~i~K~~W~~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~~~~~~i~~~ip~K~~~~- 238 (342)
+|+|||++++||+||+++| ||++|++++|++|++++.++.+++|+||+|+|+||+++++++++++++++++|||+++.
T Consensus 93 ~g~~htl~ie~~~~i~i~k-~w~~f~~e~L~~a~~~~~~~~~~~vv~d~~~A~i~~l~~~~~~~~~~i~~~~~Kk~~~s~ 171 (347)
T 2qi2_A 93 KGKHQSITVTVDSEISITK-EWDDQHIDLLKEATDEKYVTVYTAVAMDEDEAQIFLIHPYGIQQVGTVYSGRSGKYAEGN 171 (347)
T ss_dssp CCSEEEEEECTTCEEEEES-CCCHHHHHHHHHHTCHHHHCCEEEEEECSSEEEEEEECSSCEEEEEEEECCHHHHC----
T ss_pred CccEEEEEEcCCCeEEEEE-cCCHhHHHHHHHHhccccCCCEEEEEEeCCcEEEEEEECCEEEEEEEEeecCCCccccch
Confidence 8999999999999999999 99999999999999986677999999999999999999999999999999988887421
Q ss_pred -c---------c-c--c-cee--eCCcchHHHHhhccHHHHhcCCcEEEEecCCcchhHHHHHhcChhhhhhhhcccc--
Q psy17307 239 -K---------D-L--L-KEL--LSPITTVEAVKMDNKVLLENKSKFLLVHSSSAFKHSLKEILADPTVTSKMQDTKA-- 300 (342)
Q Consensus 239 -~---------~-~--~-k~V--agPG~~k~~~~~~~~~~~~~k~k~v~~~~S~g~~~gL~EvL~~~~v~~~l~d~k~-- 300 (342)
. + + . ++| ||||++++.|.+-.... .+.+|+++++|+||++|++|+|++|+++++|+++++
T Consensus 172 f~r~~F~~~V~~~~~~~d~~lIlaGPg~~k~~f~~~l~~~--~~~~i~~v~~s~~~~~gl~Evl~~~~v~~~L~~~k~~~ 249 (347)
T 2qi2_A 172 YSEASYFDQIVNALKNYSNSIIILGPGFARDRFARYCAQR--GVNVIGSFPANRTDSGAVYEFITSADGAKLLSNERIAR 249 (347)
T ss_dssp CCHHHHHHHHHHHHHTCCSCEEEEESSSHHHHHHHHHHHT--SCCCSCCEECSSSSHHHHHHHHHSHHHHHHHTTSHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCeEEEECCHHHHHHHHHHHHHh--hcceEEEEecCCCccccHHHHHhChhHHHHHHHHHHHH
Confidence 1 1 1 1 565 99999998884422221 135678999999999999999999999999999986
Q ss_pred -------------CCCCeEEEcHHHHHHHHHcCCccEEEEecCCCC
Q psy17307 301 -------------LDPSRAFYGYRHVSAANESQAIDTLLIADCLFR 333 (342)
Q Consensus 301 -------------~d~~~a~YG~~eV~~A~e~GAVetLLIsD~l~r 333 (342)
+| ++|||+++|.+|+++|||++|||+|+++|
T Consensus 250 E~~~l~~f~~~l~~d--~~~YG~~eV~~Ale~GAVetLlV~d~l~r 293 (347)
T 2qi2_A 250 DKEIVDEFLVAVKKD--MGVYGRDQTESALQMGALSDLIITDEMFR 293 (347)
T ss_dssp HHHHHHHHHHHHHTT--CEEESHHHHHHHHHTTCEEEEEEEHHHHT
T ss_pred HHHHHHHHHHHHhcC--CEEEcHHHHHHHHHcCCCeEEEEeccccc
Confidence 44 99999999999999999999999999997
No 8
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=99.98 E-value=3.7e-35 Score=293.57 Aligned_cols=213 Identities=16% Similarity=0.145 Sum_probs=99.6
Q ss_pred Eee-eeeeccCCCCcccceeeeEEEEEEEEEeeeccccEEEEeceeeeccccccccceEEEEeecCceeEEEec-CCChh
Q psy17307 107 TIR-KVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKGRNIQENQYVKMGAYHTLDLELNRKFELSKP-EWDSI 184 (342)
Q Consensus 107 t~R-kv~~e~~~~~~~~~r~~~~l~i~Ve~~ef~~~~~~lri~G~~~~~~e~v~~G~~HTl~i~~~~~~~i~K~-~W~~~ 184 (342)
+.| |+..++.++|.++.+.++.+..+| |.++.+++.|.++.++ +.|+|||++|+||+||+++|+ ||++|
T Consensus 66 nIksk~~r~~v~~ai~s~~~rlkl~~~v------p~~g~v~~~G~~~~e~---~~~~~~T~~iep~~pi~i~k~~~w~~~ 136 (441)
T 3e20_C 66 NIKSRVNRLSVLSAITSTRERLKLYNKV------PDNGLVIYCGEVIMEG---NKTRKLNIDFEPFKPINTSQYLCDNKF 136 (441)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTTCSSC------TTSCCEEEEEEECCGG---GCCEEEEEEECCSCCTTCCEEEEESSC
T ss_pred hhhhhhhccchhhHHHHHHHHHhhhccC------CCCCEEEEeceeeccC---CceeEEEEEecCCCceEEEEEccCCHH
Confidence 344 666666777777777777777766 8889999999998765 359999999999999999988 89999
Q ss_pred hHHHHHHHhcccCCCcEEEEEEeCCeEEEEEEeCCeEEEEEEEEeecCCccc-Ccc------------------------
Q psy17307 185 ALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRR-DNK------------------------ 239 (342)
Q Consensus 185 ~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~~~~~~i~~~ip~K~~-~~~------------------------ 239 (342)
++++|++|+++.. .+++|+||+++|.++.+.++++.++++++.++|+|++ +++
T Consensus 137 ~le~L~eal~~~~--~~gvVvvD~~ga~i~~l~g~~~evl~~i~~~vPkK~~~GG~S~~RF~R~ree~~~~f~~~Vae~l 214 (441)
T 3e20_C 137 HTEALAELLESDQ--RFGFIVMDGHQTLYGVVSGSAREVLQRFTVDLPKKHGRGGQSALRFARLRDEKRHNYVRKVAEGA 214 (441)
T ss_dssp CCTTGGGGC-----------------------------------------------------------------------
T ss_pred HHHHHHHHhCccC--cEEEEEEecCCeEEEEEecCeEEEEEEEEecCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999865 7999999999999999999999999999999999864 321
Q ss_pred -c--------cccee--eCCcchHHHHhhccHHHHhcCCcE-EEEecCCcchhHHHHHhcChhhhhhhhcccc-------
Q psy17307 240 -D--------LLKEL--LSPITTVEAVKMDNKVLLENKSKF-LLVHSSSAFKHSLKEILADPTVTSKMQDTKA------- 300 (342)
Q Consensus 240 -~--------~~k~V--agPG~~k~~~~~~~~~~~~~k~k~-v~~~~S~g~~~gL~EvL~~~~v~~~l~d~k~------- 300 (342)
+ .+++| ||||++++.|.+......+.+.++ .++++|+||++|++|+|++ ++++|+++++
T Consensus 215 ~~~~~~~~~~~v~~lVlaGPg~~k~~f~~~~~l~~~L~~kvv~~vdvs~gg~~Gl~EvL~~--~~~~L~d~k~~~E~~ll 292 (441)
T 3e20_C 215 VQHFITDDKPNVAGIVLAGSADFKTELGQSDLFDQRLQSRIIKTVDVSYGGDAGFNQAIEL--AADTLSNVKYVQEKKLI 292 (441)
T ss_dssp ---------------------------------------------------------------------CHHHHHHHHHH
T ss_pred HHHhhhhcccCcCEEEEECCHHHHHHHHHhcccCHHHHhheEEEEECCCCCccCHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 0 13444 999999988765211111223344 4789999999999999999 5588888875
Q ss_pred --------CCCCeEEEcHHHHHHHHHcCCccEEEEecCCC
Q psy17307 301 --------LDPSRAFYGYRHVSAANESQAIDTLLIADCLF 332 (342)
Q Consensus 301 --------~d~~~a~YG~~eV~~A~e~GAVetLLIsD~l~ 332 (342)
+|+++||||+++|.+|+++|||++|||+|++.
T Consensus 293 e~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLIsD~l~ 332 (441)
T 3e20_C 293 QRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFADLD 332 (441)
T ss_dssp HHHHHHHHTTCSCCCCSHHHHHHHHHSSCCSEEEEETTCC
T ss_pred HHHHHHHhcCCCcEEECHHHHHHHHHhCCccEEEEecccc
Confidence 78999999999999999999999999999996
No 9
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=99.97 E-value=1.3e-33 Score=282.58 Aligned_cols=233 Identities=14% Similarity=0.100 Sum_probs=183.0
Q ss_pred eeeeeccCCCCeEEEEEeeeeeec---cCCCCcccceeeeEEEEEEEEEee-----eccccEEEEeceeeeccccccccc
Q psy17307 91 WHAYNLITEGDSVRASTIRKVQSE---SNTGSSTSSRVRTMLTISVESIDF-----DTQACVLRLKGRNIQENQYVKMGA 162 (342)
Q Consensus 91 ~~~~~li~~Gd~v~~~t~Rkv~~e---~~~~~~~~~r~~~~l~i~Ve~~ef-----~~~~~~lri~G~~~~~~e~v~~G~ 162 (342)
-.++++|.|||.|...|.|+.+.. +...+ ...|..+.+.|.++..+| .+..+.+.+.|.+..++. .++
T Consensus 33 ~~isl~I~pgd~v~~~t~rl~~e~~~~~~iks-~~~r~~v~~ai~~~~~~l~~~~~~~~~Glvvf~g~~~~~~g---~~~ 108 (437)
T 1dt9_A 33 SMISLIIPPKDQISRVAKMLADEFGTASNIKS-RVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEG---KEK 108 (437)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHHHHHTTCCC-THHHHHHHHHHHHHHHHHTTCSSCCTTCEEEEEEEEECGGG---CEE
T ss_pred eEEEEEECCCCchhHHHHHHHHHhcccccccc-chHHHhHHHHHHHHHHHhccCCCCCCCeEEEEeCccccCCC---ceE
Confidence 467788999999998777775432 22122 346677777888888888 344445555555444332 368
Q ss_pred eEEEEeecCcee--EEEecCCChhhHHHHHHHhcccCCCcEEEEEEeCCeEEEEEEeCCeEEEEEEEEeecCCccc-Ccc
Q psy17307 163 YHTLDLELNRKF--ELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRR-DNK 239 (342)
Q Consensus 163 ~HTl~i~~~~~~--~i~K~~W~~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~~~~~~i~~~ip~K~~-~~~ 239 (342)
|||++++|++|| +++| ||++|++++|++|+++ .+.+++|+||+|.|+||++++++++++++++.++|+|++ +++
T Consensus 109 ~~tl~~e~~~pi~~~~~~-~~~~f~l~~L~~~~~~--~~~~~vvvvd~~~A~i~~~~~~~~~~~~~i~~~~P~K~~~Gg~ 185 (437)
T 1dt9_A 109 KVNIDFEPFKPINTSLYL-CDNKFHTEALTALLSD--DSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQ 185 (437)
T ss_dssp EEEEEECCSCCTTCCEEE-EESSCCCHHHHHHCCC--CCEEEEEECCSSCCCEEEEETTEEEEEECCCCCCSCCCCSSCS
T ss_pred EEEEEecCCCCCceeEEE-ecChhhHHHHHHHhcC--CCCEEEEEEeCCceEEEEEcCcEEEEEEEEEecCCCCCcCCCc
Confidence 999999999999 7888 9999999999999988 558999999999999999999999999999999999985 221
Q ss_pred -------------------------c--------cccee--eCCcchHHHHhhccHHHHhcCC-cEEEEecCCcchhHHH
Q psy17307 240 -------------------------D--------LLKEL--LSPITTVEAVKMDNKVLLENKS-KFLLVHSSSAFKHSLK 283 (342)
Q Consensus 240 -------------------------~--------~~k~V--agPG~~k~~~~~~~~~~~~~k~-k~v~~~~S~g~~~gL~ 283 (342)
+ .+++| ||||++++.|.+........+. .+.++++|+|+++|++
T Consensus 186 s~~Rf~R~ree~~~~f~~~Vae~l~~~~~~~~~~~~~~lIlaGpg~~k~~f~~~~~l~~~L~~~vv~~v~~s~g~~~gl~ 265 (437)
T 1dt9_A 186 SALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFN 265 (437)
T ss_dssp CSHHHHHHHHHHTTTTTTHHHHHTTTTTSCSSSCSSSCCEEEESTTTTHHHHSCSSSCTTTTTTCCCEEECSSCTTHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccEEEEECCHHHHHHHHHhhccChhhHhcEEEEEecCCCccccHH
Confidence 1 12444 9999999888653211111122 3457899999999999
Q ss_pred HHhcChhhhhhhhcccc---------------CCCCeEEEcHHHHHHHHHcCCccEEEEecCCC
Q psy17307 284 EILADPTVTSKMQDTKA---------------LDPSRAFYGYRHVSAANESQAIDTLLIADCLF 332 (342)
Q Consensus 284 EvL~~~~v~~~l~d~k~---------------~d~~~a~YG~~eV~~A~e~GAVetLLIsD~l~ 332 (342)
|+|++ ++++|+++++ ++++++|||+++|.+|+++|||++|||+|+++
T Consensus 266 E~l~~--~~~~l~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GaVetLLv~d~l~ 327 (437)
T 1dt9_A 266 QAIEL--STEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLD 327 (437)
T ss_dssp HHHHH--HSSTTTSHHHHHHHHHHHHHHHHHHSSSCCEEESHHHHHHHHHSSCCSEEEEESCCC
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEecHHHHHHHHHhCCccEEEEecCcc
Confidence 99998 4588888875 78899999999999999999999999999999
No 10
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=99.94 E-value=1.1e-27 Score=235.23 Aligned_cols=166 Identities=18% Similarity=0.189 Sum_probs=137.4
Q ss_pred cccceEEEEeecCceeEEEec-CCChhhHHHHHHHhcccCCCcEEEEEEeCCeEEEEEEeCCeEEEEEEEEeecCCccc-
Q psy17307 159 KMGAYHTLDLELNRKFELSKP-EWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRR- 236 (342)
Q Consensus 159 ~~G~~HTl~i~~~~~~~i~K~-~W~~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~~~~~~i~~~ip~K~~- 236 (342)
..|+|||++++|+.||+++|+ ||+.|++++|.+++++. +.+++|+||+|.|.||+++++++.++++++.++|+|++
T Consensus 102 ~~~~~~t~~~~~~~p~~~~~~~~~~~f~l~~L~~~~~~~--~~~~vvvvd~~~A~i~~~~~~~~~~~~~i~~~vp~K~~~ 179 (373)
T 3agk_A 102 STGKFECFMFSPPEPIRVFYYRTDKRFITDFLEDMVEDN--NAIGIIIVERDQATIGLLKGARLEVLKELEGFVPGKHKM 179 (373)
T ss_dssp ---CCEEEEEBCSSCCCSCEEEEESSCCCHHHHTTSSCS--CEEEEEEEETTEEEEEEEETTEEEEEEEEECCCC-----
T ss_pred CCccEEEEEecCCCCceEEEEecCChhHHHHHHHHhcCC--CCEEEEEEeCCcEEEEEEeCcEEEEEEEEEecCCCCCcC
Confidence 469999999999999999997 89999999999999884 69999999999999999999999999999999999985
Q ss_pred Ccc-------------------------cc---------ccee--eCCcchHHHHh--hccHHHHhcCCcEE--EEecCC
Q psy17307 237 DNK-------------------------DL---------LKEL--LSPITTVEAVK--MDNKVLLENKSKFL--LVHSSS 276 (342)
Q Consensus 237 ~~~-------------------------~~---------~k~V--agPG~~k~~~~--~~~~~~~~~k~k~v--~~~~S~ 276 (342)
+++ +. .++| ||||++++.|. +.+...+. .+++ ++++|+
T Consensus 180 gG~s~~rf~r~~e~~~~~f~~~V~~~l~~~~~~~~~~~~~~~lilaGp~~~k~~f~~~~~l~~~l~--~~vi~~~v~~s~ 257 (373)
T 3agk_A 180 GGQSQRRYERIIEQMVDEFFKKVGEEASNLLVPLAEKGVLKGVIVAGPGLAKQEFVEGNYLDYRLK--KILAPELVDVAY 257 (373)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEESTTHHHHHHHSSCSCHHHH--TTBCSSCEECCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCcceEEEECChHHHHHhhhhhhcChHhh--hCceeEEEccCC
Confidence 211 11 2344 99999999887 43333333 4677 899999
Q ss_pred cchhHHHHHhcChhhhhhhhcccc---------------CCCCeEEEcHHHHHHHHHcCCccEEEEecC
Q psy17307 277 AFKHSLKEILADPTVTSKMQDTKA---------------LDPSRAFYGYRHVSAANESQAIDTLLIADC 330 (342)
Q Consensus 277 g~~~gL~EvL~~~~v~~~l~d~k~---------------~d~~~a~YG~~eV~~A~e~GAVetLLIsD~ 330 (342)
++.+|++|+|++ +.++|+++++ ++++++|||+++|.+|+++|||+||||+|+
T Consensus 258 ~~~~g~~E~l~~--~~~~l~~~~~~~e~~~l~~f~~~l~~~~g~a~yG~~eV~~Al~~GaVetLlv~d~ 324 (373)
T 3agk_A 258 QGLQGLKEAVMK--AEKVVEAQMYRDAVNAMEEFKLHLAKGTGMIVYGEKDVEAALEMGAVKTLLIHES 324 (373)
T ss_dssp CHHHHHHHHHHH--CTTCGGGHHHHHHHHHHHHHHHHHHTTCCCEEESHHHHHHHHHTTCEEEEEEETT
T ss_pred CccccHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeeCHHHHHHHHHhCCccEEEEeCC
Confidence 999999999996 4588888764 788999999999999999999999999998
No 11
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=99.37 E-value=1.7e-13 Score=120.16 Aligned_cols=59 Identities=25% Similarity=0.366 Sum_probs=54.4
Q ss_pred cCCcchhHHHHHhcChhhhhhhhcccc---------------CCCCeEEEcHHHHHHHHHcCCccEEEEecCCCCC
Q psy17307 274 SSSAFKHSLKEILADPTVTSKMQDTKA---------------LDPSRAFYGYRHVSAANESQAIDTLLIADCLFRN 334 (342)
Q Consensus 274 ~S~g~~~gL~EvL~~~~v~~~l~d~k~---------------~d~~~a~YG~~eV~~A~e~GAVetLLIsD~l~r~ 334 (342)
.||||++||+|+|++. +++|+++|+ +|++++|||+++|.+|++||||++|||+|+|+++
T Consensus 2 ~sy~ge~Gl~E~i~~~--~~~L~~~k~~~Ekkli~~f~~~i~~d~g~~~yG~~ev~~Ale~GAVetLlv~e~l~~~ 75 (166)
T 3ir9_A 2 NAYTDESGLSELVNAA--GEKLQDLELMGQKNAVRDFFKELIADSGKVAYGESQVRANLEINSVDVLLLSEDLRAE 75 (166)
T ss_dssp -CCSCCSSHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTCTTCEEESHHHHHHHHTTTCEEEEEEETTCCCE
T ss_pred CCcccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEcHHHHHHHHHhCCceEEEEecCccce
Confidence 5899999999999985 488988886 7899999999999999999999999999999987
No 12
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=99.28 E-value=3.2e-13 Score=112.89 Aligned_cols=57 Identities=53% Similarity=0.771 Sum_probs=52.1
Q ss_pred HhcChhhhhhhhcccc---------------CCCCeEEEcHHHHHHHHHcCCccEEEEecCCCCCCCchhhc
Q psy17307 285 ILADPTVTSKMQDTKA---------------LDPSRAFYGYRHVSAANESQAIDTLLIADCLFRNSDLNERK 341 (342)
Q Consensus 285 vL~~~~v~~~l~d~k~---------------~d~~~a~YG~~eV~~A~e~GAVetLLIsD~l~r~~d~~~Rk 341 (342)
+|++|+++++|+++|+ +|++++|||+++|.+|+++|||+||||+|+++|++|+..|+
T Consensus 3 ~l~~~~v~~~l~~~k~~~E~~ll~~f~~~i~~d~g~~~yG~~eV~~Ale~GAVetLLI~d~l~r~~d~~~~~ 74 (124)
T 1x52_A 3 SGSSGTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDELFRHQDVATRS 74 (124)
T ss_dssp SCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHSCGGGEEESHHHHHHHHHTTCEEEEEEEHHHHTCSSHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCccEEEechhhhcCCChHHHH
Confidence 5789999999988886 88899999999999999999999999999999999886664
No 13
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=98.60 E-value=1.3e-08 Score=98.64 Aligned_cols=72 Identities=26% Similarity=0.497 Sum_probs=48.2
Q ss_pred EEEEEEeecccceEEEEeecCceeeeeeccCCCCeEEEEEeeeeeecc-CCCCcccceeeeEEEEEEEEEeeeccccEEE
Q psy17307 68 ISVESIDFDTQACVLRLKESEDMWHAYNLITEGDSVRASTIRKVQSES-NTGSSTSSRVRTMLTISVESIDFDTQACVLR 146 (342)
Q Consensus 68 i~v~~~~f~~~~~~l~~~~~dd~~~~~~li~~Gd~v~~~t~Rkv~~e~-~~~~~~~~r~~~~l~i~Ve~~ef~~~~~~lr 146 (342)
|++.+.++..+..+|.++++||+||+||||++||.|+++|.|+++.+. .+| ....-++.+.+ +|+
T Consensus 1 Mki~~~~~~~g~v~l~pE~~dDlw~lynli~~GD~v~a~T~Rkv~~~~~~~g----~~~~er~~~~l----------~i~ 66 (347)
T 2qi2_A 1 MRILEEDLKNSTYRIRIESLDDLWYLRNILSEGDEVSAITFRRVEESADVQR----SRERERIPITI----------RLK 66 (347)
T ss_dssp CEEEEEETTTTEEEEECCSSHHHHHHHHHCCTTCEEEEEEC-----------------CCEEEEEEE----------EEE
T ss_pred CceeEeeccCcEEEEEECCHHHHHHHHHhCCCCCEEEEEEEEEEecccccCC----CCccEEEEEEE----------EEE
Confidence 567777777889999999999999999999999999999999998653 222 22344444444 566
Q ss_pred Eeceeee
Q psy17307 147 LKGRNIQ 153 (342)
Q Consensus 147 i~G~~~~ 153 (342)
|..+...
T Consensus 67 Ve~v~f~ 73 (347)
T 2qi2_A 67 VEKIEFQ 73 (347)
T ss_dssp ECCTTCS
T ss_pred EEEEEcc
Confidence 6666555
No 14
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=98.54 E-value=4.6e-08 Score=95.24 Aligned_cols=70 Identities=29% Similarity=0.417 Sum_probs=56.6
Q ss_pred EEEEEEeecccceEEEEeecCceeeeeeccCCCCeEEEEEeeeeeeccCCCCcccceeeeEEEEEEEEEeeeccccEEEE
Q psy17307 68 ISVESIDFDTQACVLRLKESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRL 147 (342)
Q Consensus 68 i~v~~~~f~~~~~~l~~~~~dd~~~~~~li~~Gd~v~~~t~Rkv~~e~~~~~~~~~r~~~~l~i~Ve~~ef~~~~~~lri 147 (342)
|++.+-++..+..+|.++++||+||+||||++||.|+++|.|+++. |+ ...-++.+.+ +|+|
T Consensus 3 Mki~~~~~~~g~v~l~pe~~dDlw~ly~li~~gD~v~~~t~R~v~~----g~----~~~~r~~~~l----------~i~V 64 (358)
T 3agj_B 3 MRVEVLDNKRRIVRLRPESEEDLWLLRITLRPGDVVRKRTSRDVPV----GS----GRKERVVMTL----------RIRL 64 (358)
T ss_dssp CEEEECSSSSCEEEEECCSHHHHHHHHHHCCTTCEEEEEEEEEECC----SS----SCCEEEEEEE----------EEEE
T ss_pred CEEEEeeccCCEEEEEECCHHHHHHHHHhCCCCCEEEEEEEEEEec----CC----CccEEEEEEE----------EEEE
Confidence 6777778888999999999999999999999999999999999975 21 2344455544 6888
Q ss_pred eceeeecc
Q psy17307 148 KGRNIQEN 155 (342)
Q Consensus 148 ~G~~~~~~ 155 (342)
..+...+.
T Consensus 65 e~~~f~~~ 72 (358)
T 3agj_B 65 DSIEFQPF 72 (358)
T ss_dssp EEEEECTT
T ss_pred EEEEcCCC
Confidence 88888743
No 15
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=98.45 E-value=2.5e-07 Score=90.23 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=61.8
Q ss_pred EEEEEEEEEEEEEeecccceEEEEee-----cCc-----eeeeeeccCCCCeEEEE--EeeeeeeccCCCCcccceeeeE
Q psy17307 61 RVRTMLTISVESIDFDTQACVLRLKE-----SED-----MWHAYNLITEGDSVRAS--TIRKVQSESNTGSSTSSRVRTM 128 (342)
Q Consensus 61 ~~~~~l~i~v~~~~f~~~~~~l~~~~-----~dd-----~~~~~~li~~Gd~v~~~--t~Rkv~~e~~~~~~~~~r~~~~ 128 (342)
|++|+|+|+|+++|||+++++|||.| +++ .|||++ |+||+.|++. .|.+++.+++..+.+ ..+..
T Consensus 72 r~~~~L~i~Ve~ief~~~~~~Lri~G~iv~~~~~~v~~G~~HT~~-ie~~~~i~i~K~~w~~~~le~L~e~~~--~~~~~ 148 (364)
T 3obw_A 72 RIPMTIILKVDYTEFQEFTNRLRIHGIIEDAPERFGIKGAHHTIN-LDIGDEIIIIKQQWNKYVLDRLKRQAN--KRSRI 148 (364)
T ss_dssp EEEEEEEEEEEEEEEETTTTEEEEEEEEEECCGGGCCTTCEEEEE-ECTTCEEEEECSCC----------------CCCE
T ss_pred EEEEEEEEEEEEEEecCCCCEEEEEEEEEeccccccccceEEEEE-EcCCCeEEEEEccCCHHHHHHHHHHhC--cCCCE
Confidence 78999999999999999999999998 323 699999 9999999993 599999999988543 45667
Q ss_pred EEEEEEEEeeeccccEEEEeceeee
Q psy17307 129 LTISVESIDFDTQACVLRLKGRNIQ 153 (342)
Q Consensus 129 l~i~Ve~~ef~~~~~~lri~G~~~~ 153 (342)
..|.++..++.. +.|+-+|+.+.
T Consensus 149 ~~vv~d~g~A~i--~~l~~~~~~~~ 171 (364)
T 3obw_A 149 IIALVDFDEYLI--AIPFEQGIKIL 171 (364)
T ss_dssp EEEEEETTEEEE--EEECSSCEECC
T ss_pred EEEEEECCcEEE--EEEeCCEEEEE
Confidence 778888888776 56776677664
No 16
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=98.43 E-value=1.2e-08 Score=99.27 Aligned_cols=93 Identities=18% Similarity=0.300 Sum_probs=79.0
Q ss_pred cceEEEEEEEEEEEEEeecccceEEEEee-----cCc-----eeeeeeccCCCCeEEEE--EeeeeeeccCCCCccccee
Q psy17307 58 TSSRVRTMLTISVESIDFDTQACVLRLKE-----SED-----MWHAYNLITEGDSVRAS--TIRKVQSESNTGSSTSSRV 125 (342)
Q Consensus 58 ~~~~~~~~l~i~v~~~~f~~~~~~l~~~~-----~dd-----~~~~~~li~~Gd~v~~~--t~Rkv~~e~~~~~~~~~r~ 125 (342)
+++|++|+|+|+|+++|||+++++|||+| +++ .|||++ |.||+.|++. .|.+++.+++..+.+.+..
T Consensus 55 ~~~r~~~~l~i~Ve~~ef~~~~~~Lri~G~i~~~~~~~v~~G~~hT~~-ie~~~~i~i~k~~w~~~~~e~L~ea~~~~~~ 133 (357)
T 3j15_A 55 KVEVIPVFLGVQAEKINFHKFANQVRVTGPIVYASREDVPLGKYHTIA-IEQGTVVTIQKPRWKEHHIERLKEAVAASKR 133 (357)
T ss_dssp CCCCCCCCCEEECSCEEEETTTTEEEECCBEEECCCSSCCCSSBCCEE-ECSSCCEEECTTCCCHHHHHHHHHSCSSCCC
T ss_pred ccEEEEEEEEEEEEEEEecCCCCEEEEEEEEEeccccccccccEEEEE-ecCCCeEEEEEecCCHHHHHHHHHHHhcccc
Confidence 35899999999999999999999999998 423 699999 9999999993 5999999999887776667
Q ss_pred eeEEEEEEEEEeeeccccEEEEeceeee
Q psy17307 126 RTMLTISVESIDFDTQACVLRLKGRNIQ 153 (342)
Q Consensus 126 ~~~l~i~Ve~~ef~~~~~~lri~G~~~~ 153 (342)
+.+..|.++..+++. +.|+-+|+.+.
T Consensus 134 ~~~~~Vv~d~g~A~i--~~l~~~~~~~~ 159 (357)
T 3j15_A 134 ARVMIVVIDDGEADM--ALVREYGVEIL 159 (357)
T ss_dssp SCCCEEEECSSCEEE--EEEETTEEEEE
T ss_pred CcEEEEEEECCcEEE--EEEeCCEEEEE
Confidence 778888898888877 56777777765
No 17
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=98.36 E-value=1.5e-07 Score=92.57 Aligned_cols=64 Identities=8% Similarity=0.197 Sum_probs=41.1
Q ss_pred cccceEEEEeecCceeeeeeccCCCCeEEEEEeeeeeeccCCCCcccceeeeEEEEEEEEEeeeccccEEEEeceeeecc
Q psy17307 76 DTQACVLRLKESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKGRNIQEN 155 (342)
Q Consensus 76 ~~~~~~l~~~~~dd~~~~~~li~~Gd~v~~~t~Rkv~~e~~~~~~~~~r~~~~l~i~Ve~~ef~~~~~~lri~G~~~~~~ 155 (342)
..+..+|.++++||+||+||||++||.|+++|.|+++. ..... ...+.++.+ +|+|..++..+.
T Consensus 14 ~~g~v~l~pE~~dDlw~lynli~~gD~v~~~T~Rkv~~-----~~~g~-~~~r~~~~L----------~i~Ve~~~f~~~ 77 (386)
T 2vgn_A 14 GGAVITLLPEDKEDLFTVYQIVDKDDELIFKKKFTSKL-----DEAGK-KKSTDLVKL----------KIKVISEDFDMK 77 (386)
T ss_dssp TCEEEEEECCSHHHHHHHHTTCCTTCEEEEEECC-------------------CCEEE----------EEEEEEEEEETT
T ss_pred CCceEEEEECCHHHHHHHHHhcCCCCEEEEEEEEEEec-----cCCCC-ceEEEEEEE----------EEEEEEEEecCC
Confidence 34667888999999999999999999999999999964 11122 222333333 577777777753
No 18
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.35 E-value=3e-08 Score=97.61 Aligned_cols=65 Identities=28% Similarity=0.515 Sum_probs=37.3
Q ss_pred ccceEEEEeecCceeeeeeccCCCCeEEEEEeeeeeeccCCCCcccceeeeEEEEEEEEEeeeccccEEEEeceeeecc
Q psy17307 77 TQACVLRLKESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKGRNIQEN 155 (342)
Q Consensus 77 ~~~~~l~~~~~dd~~~~~~li~~Gd~v~~~t~Rkv~~e~~~~~~~~~r~~~~l~i~Ve~~ef~~~~~~lri~G~~~~~~ 155 (342)
.+..+|.++++||+||+||||++||.|+++|.|+++.++.++ ....-++.+.+ +|+|..+...+.
T Consensus 13 ~g~v~l~pE~~dDlw~lynlI~~GD~V~a~T~Rkv~~~~~~~----~~~~~r~~~~L----------~i~Ve~ief~~~ 77 (390)
T 3mca_B 13 SGWITMCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATG----STSGSRVVMKL----------RILVENMDFDTK 77 (390)
T ss_dssp CBCCBC---CTHHHHHHHHHCCTTCEEBCCCCCC----------------------------------EECCCEEECTT
T ss_pred CceEEEEeCCHHHHHHHHHhcCCCCEEEEEEEEEEEccCCCC----CCceEEEEEEE----------EEEEEEEEecCC
Confidence 457889999999999999999999999999999998776444 23333344433 678888887743
No 19
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=98.06 E-value=2e-06 Score=83.57 Aligned_cols=90 Identities=26% Similarity=0.247 Sum_probs=75.5
Q ss_pred EEEEEEEEEEEEEeecccceEEEEee-----cC-ceeeeeeccCCCCeEEE-EEeeeeeeccCCCCcccceeeeEEEEEE
Q psy17307 61 RVRTMLTISVESIDFDTQACVLRLKE-----SE-DMWHAYNLITEGDSVRA-STIRKVQSESNTGSSTSSRVRTMLTISV 133 (342)
Q Consensus 61 ~~~~~l~i~v~~~~f~~~~~~l~~~~-----~d-d~~~~~~li~~Gd~v~~-~t~Rkv~~e~~~~~~~~~r~~~~l~i~V 133 (342)
|++|+|+|+|+++|||+++++|||.| +| -.|||++ |.||+.|++ +.|.+++.+++..+.+.+..+.+..|.+
T Consensus 58 r~~~~L~i~Ve~ief~~~~~~Lri~G~i~~~~~~G~~hT~~-iep~~~i~i~k~w~~~~~e~L~ea~~~~~~~~~~~vv~ 136 (352)
T 3oby_A 58 MVTVRLGIEVEKVEFHRFANRLRVSGKIVAGIEESGYHTLN-ITVGKELSIIKKWKPEQLERLRRAVEDSNRPEIVMLTI 136 (352)
T ss_dssp -CCCCEEEEEEEEEECSSSSCEEEEEEEEEC----CEEEEE-ECTTCCEEEEEECCHHHHHHHHHHHTTSCCCCEEEEEE
T ss_pred EEEEEEEEEEEEEEecCCCCEEEEEEEEEecCCCCeEEEEE-EeCCCeEEEEEcCCHHHHHHHHHHhhccccCcEEEEEE
Confidence 67899999999999999999999998 23 4899999 999999999 6888899999988766556678888999
Q ss_pred EEEeeeccccEEEEeceeee
Q psy17307 134 ESIDFDTQACVLRLKGRNIQ 153 (342)
Q Consensus 134 e~~ef~~~~~~lri~G~~~~ 153 (342)
+..++.. +.|+-+|+.+.
T Consensus 137 d~g~A~i--~~l~~~~~~~~ 154 (352)
T 3oby_A 137 EEGYAVA--GVLRQWGVEEI 154 (352)
T ss_dssp ETTEEEE--EEEETTEEEEE
T ss_pred ECCcEEE--EEEeCCEEEEE
Confidence 8888877 56777777775
No 20
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=82.98 E-value=0.0021 Score=63.88 Aligned_cols=108 Identities=9% Similarity=-0.016 Sum_probs=74.6
Q ss_pred hhhhcccCCCEEEEEEEEEEeeccCCC--CccceEEEEEEEEEEEEEee-----cccceEEEEeec----Cc--eeeeee
Q psy17307 29 HAYNLIAEGDSVRASTIRKVQSESNTG--SSTSSRVRTMLTISVESIDF-----DTQACVLRLKES----ED--MWHAYN 95 (342)
Q Consensus 29 ~lynli~~gD~v~~~t~Rkv~~~~~~g--~~~~~~~~~~l~i~v~~~~f-----~~~~~~l~~~~~----dd--~~~~~~ 95 (342)
.+|++|.+||.|.+.|.|++...+.++ ..+.+|.++.++|+++..+| .+..+.+...+. ++ .|||++
T Consensus 34 ~isl~I~pgd~v~~~t~rl~~e~~~~~~iks~~~r~~v~~ai~~~~~~l~~~~~~~~~Glvvf~g~~~~~~g~~~~~tl~ 113 (437)
T 1dt9_A 34 MISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNID 113 (437)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHTTCSSCCTTCEEEEEEEEECGGGCEEEEEEE
T ss_pred EEEEEECCCCchhHHHHHHHHHhccccccccchHHHhHHHHHHHHHHHhccCCCCCCCeEEEEeCccccCCCceEEEEEE
Confidence 468899999999999999975321111 12578899999999999999 344444554443 23 599999
Q ss_pred ccCCCCeE--EE-EEeeeeeeccCCCCcccceeeeEEEEEEEEEeee
Q psy17307 96 LITEGDSV--RA-STIRKVQSESNTGSSTSSRVRTMLTISVESIDFD 139 (342)
Q Consensus 96 li~~Gd~v--~~-~t~Rkv~~e~~~~~~~~~r~~~~l~i~Ve~~ef~ 139 (342)
+.|+..+ ++ +.|.+++.+.+..+... .+....|.|+...++
T Consensus 114 -~e~~~pi~~~~~~~~~~f~l~~L~~~~~~--~~~~~vvvvd~~~A~ 157 (437)
T 1dt9_A 114 -FEPFKPINTSLYLCDNKFHTEALTALLSD--DSKFGFIVIDGSGAL 157 (437)
T ss_dssp -ECCSCCTTCCEEEEESSCCCHHHHHHCCC--CCEEEEEECCSSCCC
T ss_pred -ecCCCCCceeEEEecChhhHHHHHHHhcC--CCCEEEEEEeCCceE
Confidence 8899888 44 46888888887775444 223555555555554
No 21
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=60.45 E-value=0.056 Score=53.70 Aligned_cols=125 Identities=18% Similarity=0.117 Sum_probs=62.7
Q ss_pred EEEeeCCCcchhhhhhcccCCCEEEEEEEE-EEeeccCCCCccceEEEEEEEEEEEEEeecccceEEEEeec------Cc
Q psy17307 17 VALVPEESEDMWHAYNLIAEGDSVRASTIR-KVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKES------ED 89 (342)
Q Consensus 17 v~l~~e~~dDlw~lynli~~gD~v~~~t~R-kv~~~~~~g~~~~~~~~~~l~i~v~~~~f~~~~~~l~~~~~------dd 89 (342)
|.|..--.+.+--.-+.+.. ..=+|.|.| |++..+.+|+..+.+.++.|..+| +..+.|++.|. .-
T Consensus 40 isl~ipp~~~i~~v~~~l~~-e~~~asnIksk~~r~~v~~ai~s~~~rlkl~~~v------p~~g~v~~~G~~~~e~~~~ 112 (441)
T 3e20_C 40 ITLIIPPGEQISRYSNMLAE-EYGTASNIKSRVNRLSVLSAITSTRERLKLYNKV------PDNGLVIYCGEVIMEGNKT 112 (441)
T ss_dssp EEEECCTTCCHHHHHHHHHH-HHHHTTCCCCHHHHHHHHHHHHHHHHHHTTCSSC------TTSCCEEEEEEECCGGGCC
T ss_pred EEEEeCCCCcHHHHHHHHHH-HHhhhhhhhhhhhccchhhHHHHHHHHHhhhccC------CCCCEEEEeceeeccCCce
Confidence 66655434443333333321 011234444 566666666666666667777666 88888888882 23
Q ss_pred eeeeeeccCCCCeEEE-E--EeeeeeeccCCCCcccceeeeEEEEEEEEEeeeccccEEEEeceeee
Q psy17307 90 MWHAYNLITEGDSVRA-S--TIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQACVLRLKGRNIQ 153 (342)
Q Consensus 90 ~~~~~~li~~Gd~v~~-~--t~Rkv~~e~~~~~~~~~r~~~~l~i~Ve~~ef~~~~~~lri~G~~~~ 153 (342)
.|||++ |.|+..|++ + .|.+++.+++..+.+... ....|.|+..++.. +.++-.|+.+.
T Consensus 113 ~~~T~~-iep~~pi~i~k~~~w~~~~le~L~eal~~~~--~~gvVvvD~~ga~i--~~l~g~~~evl 174 (441)
T 3e20_C 113 RKLNID-FEPFKPINTSQYLCDNKFHTEALAELLESDQ--RFGFIVMDGHQTLY--GVVSGSAREVL 174 (441)
T ss_dssp EEEEEE-ECCSCCTTCCEEEEESSCCCTTGGGGC---------------------------------
T ss_pred eEEEEE-ecCCCceEEEEEccCCHHHHHHHHHHhCccC--cEEEEEEecCCeEE--EEEecCeEEEE
Confidence 799999 999999987 2 699999999988765543 24445566656543 35666665543
No 22
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O
Probab=59.30 E-value=5.6 Score=29.17 Aligned_cols=43 Identities=9% Similarity=-0.031 Sum_probs=35.9
Q ss_pred eeeEEEEEEEEEeeeccccE-EEEeceeeeccccccccceEEEE
Q psy17307 125 VRTMLTISVESIDFDTQACV-LRLKGRNIQENQYVKMGAYHTLD 167 (342)
Q Consensus 125 ~~~~l~i~Ve~~ef~~~~~~-lri~G~~~~~~e~v~~G~~HTl~ 167 (342)
.+.+|.++.-..+|-..++- +|++|..+.|-+.|.+|.=|||-
T Consensus 17 ~~krlGvK~~~Gq~V~aG~IivrQRgtk~hPG~nVg~GkD~TLf 60 (69)
T 2ftc_O 17 SGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNKCLY 60 (69)
T ss_pred CCceeeEEecCCeEecCCeEEEecCCCeEcCCCCeeecCCCcEE
Confidence 45689999999998554444 99999999999999999999974
No 23
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=52.91 E-value=15 Score=28.36 Aligned_cols=31 Identities=10% Similarity=0.049 Sum_probs=28.0
Q ss_pred CCCCeEEEcHHHHHHHHHcCCccEEEEecCC
Q psy17307 301 LDPSRAFYGYRHVSAANESQAIDTLLIADCL 331 (342)
Q Consensus 301 ~d~~~a~YG~~eV~~A~e~GAVetLLIsD~l 331 (342)
...+++..|.++|.+|++.|-+.-++|+.+.
T Consensus 15 ~kagk~v~G~~~v~kai~~gka~lViiA~D~ 45 (101)
T 3v7q_A 15 NRARKVVSGEDLVIKEIRNARAKLVLLTEDA 45 (101)
T ss_dssp HHTTCEEESHHHHHHHHHTTCCSEEEEETTS
T ss_pred hhhhhcccchhhhHHHHhcCceeEEEEeccc
Confidence 4568999999999999999999999999864
No 24
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=50.33 E-value=18 Score=27.90 Aligned_cols=31 Identities=10% Similarity=0.158 Sum_probs=27.9
Q ss_pred CCCCeEEEcHHHHHHHHHcCCccEEEEecCC
Q psy17307 301 LDPSRAFYGYRHVSAANESQAIDTLLIADCL 331 (342)
Q Consensus 301 ~d~~~a~YG~~eV~~A~e~GAVetLLIsD~l 331 (342)
...++...|.++|.+|++.|-+.-++|+.+.
T Consensus 14 ~kagk~v~G~~~v~kai~~gka~lViiA~D~ 44 (101)
T 3on1_A 14 ARARQLLTGEEQVVKAVQNGQVTLVILSSDA 44 (101)
T ss_dssp HHTTCEEESHHHHHHHHHTTCCSEEEEETTS
T ss_pred HHHCCEeECHHHHHHHHHcCCCcEEEEeCCC
Confidence 4568999999999999999999999999864
No 25
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=49.84 E-value=27 Score=28.25 Aligned_cols=41 Identities=12% Similarity=0.090 Sum_probs=33.3
Q ss_pred hHHHHHhcChhhhhhhhccccCCCCeEEEcHHHHHHHHHcCCccEEEEecCC
Q psy17307 280 HSLKEILADPTVTSKMQDTKALDPSRAFYGYRHVSAANESQAIDTLLIADCL 331 (342)
Q Consensus 280 ~gL~EvL~~~~v~~~l~d~k~~d~~~a~YG~~eV~~A~e~GAVetLLIsD~l 331 (342)
..|+++|+... ..++...|.+++.+|++.|-+.-++|+.+.
T Consensus 10 ~~l~~~L~~A~-----------~~gkl~~G~~~v~Kai~~gka~LViiA~D~ 50 (126)
T 2xzm_U 10 EVLAKVIKSSN-----------CQDAISKGLHEVLRTIEAKQALFVCVAEDC 50 (126)
T ss_dssp HHHHHHHTTTT-----------SSSCEEESHHHHHHHHHHTCCSEEEEESSC
T ss_pred HHHHHHHHHHH-----------HcCCEeecHHHHHHHHHcCCceEEEEeCCC
Confidence 45566665544 558899999999999999999999999764
No 26
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.52 E-value=17 Score=27.85 Aligned_cols=29 Identities=7% Similarity=0.209 Sum_probs=26.8
Q ss_pred CCCeEEEcHHHHHHHHHcCCccEEEEecC
Q psy17307 302 DPSRAFYGYRHVSAANESQAIDTLLIADC 330 (342)
Q Consensus 302 d~~~a~YG~~eV~~A~e~GAVetLLIsD~ 330 (342)
..++...|.++|.+|++.|-+.-++|+.+
T Consensus 12 kagk~v~G~~~v~kai~~gka~lViiA~D 40 (99)
T 3j21_Z 12 ETGKVVLGSNETIRLAKTGGAKLIIVAKN 40 (99)
T ss_dssp HSSCEEESHHHHHHHHHHTCCSEEEEECC
T ss_pred HhCCEeECHHHHHHHHHcCCccEEEEeCC
Confidence 45889999999999999999999999987
No 27
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=46.67 E-value=18 Score=28.02 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=27.6
Q ss_pred CCCCeEEEcHHHHHHHHHcCCccEEEEecCC
Q psy17307 301 LDPSRAFYGYRHVSAANESQAIDTLLIADCL 331 (342)
Q Consensus 301 ~d~~~a~YG~~eV~~A~e~GAVetLLIsD~l 331 (342)
...++...|.++|.+|++.|-+.-++|+.+.
T Consensus 18 ~kagklv~G~~~v~kai~~gkaklViiA~D~ 48 (104)
T 4a18_G 18 MRSGKATLGYKSTIKAIRNGTAKLVFISNNC 48 (104)
T ss_dssp HHHSEEEESHHHHHHHHHHTCCCEEEECTTS
T ss_pred HHhCCEeECHHHHHHHHHcCCceEEEEeCCC
Confidence 3458999999999999999999999999864
No 28
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=45.53 E-value=21 Score=26.43 Aligned_cols=30 Identities=10% Similarity=0.191 Sum_probs=27.1
Q ss_pred CCCeEEEcHHHHHHHHHcCCccEEEEecCC
Q psy17307 302 DPSRAFYGYRHVSAANESQAIDTLLIADCL 331 (342)
Q Consensus 302 d~~~a~YG~~eV~~A~e~GAVetLLIsD~l 331 (342)
..++...|.++|.+|++.|-+.-++|+.+.
T Consensus 8 kagk~~~G~~~v~kai~~gkaklViiA~D~ 37 (82)
T 3v7e_A 8 QAKSIIIGTKQTVKALKRGSVKEVVVAKDA 37 (82)
T ss_dssp HCSEEEESHHHHHHHHTTTCEEEEEEETTS
T ss_pred HcCCeeEcHHHHHHHHHcCCeeEEEEeCCC
Confidence 458899999999999999999999998864
No 29
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=43.19 E-value=24 Score=27.01 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=26.6
Q ss_pred CCCeEEEcHHHHHHHHHcCCccEEEEecC
Q psy17307 302 DPSRAFYGYRHVSAANESQAIDTLLIADC 330 (342)
Q Consensus 302 d~~~a~YG~~eV~~A~e~GAVetLLIsD~ 330 (342)
..++...|.++|.+|++.|-+.-++|+.+
T Consensus 13 kagkl~~G~~~v~kai~~gka~lViiA~D 41 (101)
T 1w41_A 13 DTGKIVMGARKSIQYAKMGGAKLIIVARN 41 (101)
T ss_dssp HHSEEEESHHHHHHHHHHTCCSEEEEETT
T ss_pred HcCCEeECHHHHHHHHHcCCCcEEEEeCC
Confidence 34889999999999999999999999987
No 30
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=39.31 E-value=33 Score=26.58 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=28.3
Q ss_pred CCCCeEEEcHHHHHHHHHcCCccEEEEecCC
Q psy17307 301 LDPSRAFYGYRHVSAANESQAIDTLLIADCL 331 (342)
Q Consensus 301 ~d~~~a~YG~~eV~~A~e~GAVetLLIsD~l 331 (342)
...++...|.++|.+|++.|-+.-++++.+.
T Consensus 18 ~kagk~v~G~~~v~kai~~gkaklVilA~D~ 48 (105)
T 3u5e_c 18 IKSGKYTLGYKSTVKSLRQGKSKLIIIAANT 48 (105)
T ss_dssp HTTSEEEESHHHHHHHHHTTCCSEEEECTTS
T ss_pred HHhCCeeECHHHHHHHHHcCCceEEEEeCCC
Confidence 4568999999999999999999999999875
No 31
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=38.91 E-value=30 Score=27.01 Aligned_cols=30 Identities=10% Similarity=0.168 Sum_probs=27.3
Q ss_pred CCCeEEEcHHHHHHHHHcCCccEEEEecCC
Q psy17307 302 DPSRAFYGYRHVSAANESQAIDTLLIADCL 331 (342)
Q Consensus 302 d~~~a~YG~~eV~~A~e~GAVetLLIsD~l 331 (342)
..++...|.++|.+|++.|-+.-++|+.+.
T Consensus 18 kagkl~~G~~~v~kai~~gka~lViiA~D~ 47 (110)
T 3cpq_A 18 DTGKVILGSKRTIKFVKHGEGKLVVLAGNI 47 (110)
T ss_dssp HHSEEEESHHHHHHHHHTTCCSEEEECTTC
T ss_pred HcCCeeeCHHHHHHHHHcCCceEEEEeCCC
Confidence 458999999999999999999999999875
No 32
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=38.11 E-value=31 Score=27.84 Aligned_cols=31 Identities=10% Similarity=0.252 Sum_probs=27.6
Q ss_pred CCCCeEEEcHHHHHHHHHcCCccEEEEecCC
Q psy17307 301 LDPSRAFYGYRHVSAANESQAIDTLLIADCL 331 (342)
Q Consensus 301 ~d~~~a~YG~~eV~~A~e~GAVetLLIsD~l 331 (342)
...+++..|.++|.+|++.|-+.-++|+.+.
T Consensus 23 ~kaGklv~G~~~v~kaIr~gkakLVIiA~Da 53 (125)
T 3vi6_A 23 MKSGKYVLGYKQTLKMIRQGKAKLVILANNC 53 (125)
T ss_dssp HHHSEEEESHHHHHHHHHTTCCSEEEECTTS
T ss_pred HHhCCeeeCHHHHHHHHHcCCceEEEEeCCC
Confidence 4558999999999999999999999999854
No 33
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=37.88 E-value=31 Score=27.40 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=27.2
Q ss_pred CCCeEEEcHHHHHHHHHcCCccEEEEecCC
Q psy17307 302 DPSRAFYGYRHVSAANESQAIDTLLIADCL 331 (342)
Q Consensus 302 d~~~a~YG~~eV~~A~e~GAVetLLIsD~l 331 (342)
..++...|.++|.+|++.|-+.-++|+.+.
T Consensus 26 kag~l~~G~~~v~kal~~gka~lViiA~D~ 55 (120)
T 1vq8_F 26 DTGAVKKGTNETTKSIERGSAELVFVAEDV 55 (120)
T ss_dssp HSSCEEESHHHHHHHHHHTCCSEEEEESCC
T ss_pred HcCCEeECHHHHHHHHHcCCceEEEEeCCC
Confidence 458899999999999999999999999765
No 34
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=36.75 E-value=36 Score=27.16 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=27.1
Q ss_pred CCCeEEEcHHHHHHHHHcCCccEEEEecCC
Q psy17307 302 DPSRAFYGYRHVSAANESQAIDTLLIADCL 331 (342)
Q Consensus 302 d~~~a~YG~~eV~~A~e~GAVetLLIsD~l 331 (342)
..++...|.++|.+|++.|-+.-++|+.+.
T Consensus 25 kagkl~~G~~~v~kal~~gka~lViiA~D~ 54 (124)
T 2fc3_A 25 ETGRIKKGTNETTKAVERGLAKLVVIAEDV 54 (124)
T ss_dssp HHSEEEESHHHHHHHHHTTCCSEEEEETTC
T ss_pred HhCCccCCHHHHHHHHHcCCceEEEEcCCC
Confidence 448899999999999999999999999765
No 35
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=35.33 E-value=36 Score=26.89 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=27.1
Q ss_pred CCCeEEEcHHHHHHHHHcCCccEEEEecCC
Q psy17307 302 DPSRAFYGYRHVSAANESQAIDTLLIADCL 331 (342)
Q Consensus 302 d~~~a~YG~~eV~~A~e~GAVetLLIsD~l 331 (342)
..++...|.++|.+|++.|-+.-++|+.+.
T Consensus 24 kag~l~~G~~~v~kal~~gka~lViiA~D~ 53 (119)
T 1rlg_A 24 ESGKVKKGTNETTKAVERGLAKLVYIAEDV 53 (119)
T ss_dssp HHSEEEESHHHHHHHHTTTCCSEEEEESCC
T ss_pred HhCCeeECHHHHHHHHHcCCCcEEEEeCCC
Confidence 448999999999999999999999999865
No 36
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=35.18 E-value=41 Score=26.56 Aligned_cols=31 Identities=16% Similarity=0.256 Sum_probs=28.1
Q ss_pred CCCCeEEEcHHHHHHHHHcCCccEEEEecCC
Q psy17307 301 LDPSRAFYGYRHVSAANESQAIDTLLIADCL 331 (342)
Q Consensus 301 ~d~~~a~YG~~eV~~A~e~GAVetLLIsD~l 331 (342)
...++...|.++|.+|++.|-+.-++|+.+.
T Consensus 22 ~kagk~~~G~~~t~kai~~gkakLVilA~D~ 52 (112)
T 3iz5_f 22 MKSGKYTLGYKTVLKTLRSSLGKLIILANNC 52 (112)
T ss_dssp HTTCEEEESHHHHHHHHHTTCCSEEEECSCC
T ss_pred HHhCCeeECHHHHHHHHHcCCceEEEEeCCC
Confidence 4668999999999999999999999999865
No 37
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=34.36 E-value=39 Score=26.86 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=26.2
Q ss_pred CeEEEcHHHHHHHHHcCCccEEEEecCC
Q psy17307 304 SRAFYGYRHVSAANESQAIDTLLIADCL 331 (342)
Q Consensus 304 ~~a~YG~~eV~~A~e~GAVetLLIsD~l 331 (342)
++...|.++|.+|++.|-+.-++|+.+.
T Consensus 28 gkl~~G~~~v~kai~~gka~lViiA~D~ 55 (120)
T 1xbi_A 28 QKIKKGANEVTKAVERGIAKLVIIAEDV 55 (120)
T ss_dssp SEEEESHHHHHHHHHHTCCSEEEEESCC
T ss_pred CCccccHHHHHHHHHcCCceEEEEcCCC
Confidence 8999999999999999999999999765
No 38
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=34.03 E-value=58 Score=25.75 Aligned_cols=35 Identities=14% Similarity=0.330 Sum_probs=31.4
Q ss_pred EEEeecccceEEEEeecCceeeeeeccCCCCeEEEE
Q psy17307 71 ESIDFDTQACVLRLKESEDMWHAYNLITEGDSVRAS 106 (342)
Q Consensus 71 ~~~~f~~~~~~l~~~~~dd~~~~~~li~~Gd~v~~~ 106 (342)
+.-.|...++.+.|+=+++.|.-.+ |.|+|.|++.
T Consensus 53 d~Y~F~D~TG~I~VeId~~~w~g~~-v~p~~~Vri~ 87 (109)
T 1nnx_A 53 DLYVFKDASGTINVDIDHKRWNGVT-VTPKDTVEIQ 87 (109)
T ss_dssp TEEEEEETTEEEEEECCGGGSTTCC-CCTTSCEEEE
T ss_pred CeEEEECCCccEEEEEChhhcCCcc-cCCCCEEEEE
Confidence 5678999999999999999999888 9999999994
No 39
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=33.31 E-value=41 Score=26.79 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=28.4
Q ss_pred CCCCeEEEcHHHHHHHHHcCCccEEEEecCCC
Q psy17307 301 LDPSRAFYGYRHVSAANESQAIDTLLIADCLF 332 (342)
Q Consensus 301 ~d~~~a~YG~~eV~~A~e~GAVetLLIsD~l~ 332 (342)
...++...|.++|.+|++.|-+.-++|+.+.-
T Consensus 16 ~k~gkl~~G~~~v~kai~~gkakLViiA~D~~ 47 (121)
T 2lbw_A 16 SKAKNVKRGVKEVVKALRKGEKGLVVIAGDIW 47 (121)
T ss_dssp HTTTCEEESHHHHHHHHHHSCCCEEEECTTCS
T ss_pred HHcCCccccHHHHHHHHHcCCceEEEEeCCCC
Confidence 46689999999999999999999999997653
No 40
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=31.68 E-value=49 Score=26.42 Aligned_cols=31 Identities=10% Similarity=-0.028 Sum_probs=28.0
Q ss_pred CCCCeEEEcHHHHHHHHHcCCccEEEEecCC
Q psy17307 301 LDPSRAFYGYRHVSAANESQAIDTLLIADCL 331 (342)
Q Consensus 301 ~d~~~a~YG~~eV~~A~e~GAVetLLIsD~l 331 (342)
...+++..|.++|.+|++.|-+.-++|+.+.
T Consensus 27 ~kagklv~G~~~v~kai~~gka~lViiA~D~ 57 (122)
T 3o85_A 27 ASLQAIKRGANEALKQVNRGKAELVIIAADA 57 (122)
T ss_dssp HHTTCEEESHHHHHHHHHTTCCSEEEEETTC
T ss_pred HHhCCEeEcHHHHHHHHHcCCceEEEEeCCC
Confidence 4568899999999999999999999999765
No 41
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=31.51 E-value=44 Score=27.20 Aligned_cols=31 Identities=13% Similarity=0.055 Sum_probs=27.6
Q ss_pred CCCCeEEEcHHHHHHHHHcCCccEEEEecCC
Q psy17307 301 LDPSRAFYGYRHVSAANESQAIDTLLIADCL 331 (342)
Q Consensus 301 ~d~~~a~YG~~eV~~A~e~GAVetLLIsD~l 331 (342)
...++...|.++|.+|++.|-+.-++|+.+.
T Consensus 37 ~kagklv~G~~~v~kal~~gkaklViiA~D~ 67 (135)
T 2aif_A 37 CNYKQLRKGANEATKALNRGIAEIVLLAADA 67 (135)
T ss_dssp HHTTCEEESHHHHHHHHHTTCEEEEEEETTC
T ss_pred HHcCCcccCHHHHHHHHHcCCCeEEEEecCC
Confidence 4568999999999999999999999998764
No 42
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=28.42 E-value=50 Score=26.93 Aligned_cols=31 Identities=6% Similarity=0.007 Sum_probs=27.7
Q ss_pred CCCCeEEEcHHHHHHHHHcCCccEEEEecCC
Q psy17307 301 LDPSRAFYGYRHVSAANESQAIDTLLIADCL 331 (342)
Q Consensus 301 ~d~~~a~YG~~eV~~A~e~GAVetLLIsD~l 331 (342)
...++...|.++|.+|++.|-+.-++|+.+.
T Consensus 28 ~k~gkl~~G~~~v~kai~~gkakLViiA~D~ 58 (134)
T 2ale_A 28 ANLRQLKKGANEATKTLNRGISEFIIMAADC 58 (134)
T ss_dssp HHTTCEEESHHHHHHHHHHTCEEEEEEETTC
T ss_pred HHcCCcccCchHHHHHHHhCCCeEEEEeCCC
Confidence 3568899999999999999999999999765
No 43
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=26.34 E-value=79 Score=27.63 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=39.2
Q ss_pred hhcccCCCEEEEEEEEEEeeccCCCCccceEEEEEEEEEEEEEe----ecccceEEEEeec----CceeeeeeccCCCCe
Q psy17307 31 YNLIAEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESID----FDTQACVLRLKES----EDMWHAYNLITEGDS 102 (342)
Q Consensus 31 ynli~~gD~v~~~t~Rkv~~~~~~g~~~~~~~~~~l~i~v~~~~----f~~~~~~l~~~~~----dd~~~~~~li~~Gd~ 102 (342)
+...++||+|.+.-++ +.. ....+.|..++ -..+.+-|++++- .|.-...+.+++||+
T Consensus 76 ~y~p~vGDvV~G~V~~-v~~-------------~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~ 141 (209)
T 2nn6_I 76 QLLPDVGAIVTCKVSS-INS-------------RFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDI 141 (209)
T ss_dssp CCCCCTTCEEEEEEEE-ECS-------------SEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSE
T ss_pred cCCCCCCCEEEEEEEE-EEC-------------ceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCE
Confidence 3578999999997543 221 11223333222 1356788888862 233467778999999
Q ss_pred EEEEE
Q psy17307 103 VRAST 107 (342)
Q Consensus 103 v~~~t 107 (342)
|+++-
T Consensus 142 V~akV 146 (209)
T 2nn6_I 142 VLAKV 146 (209)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99963
No 44
>2xsk_A CSGC; chaperone; 1.70A {Escherichia coli} PDB: 2y2y_A 2y2t_A
Probab=24.98 E-value=1.8e+02 Score=22.90 Aligned_cols=79 Identities=16% Similarity=0.149 Sum_probs=42.8
Q ss_pred CceeEEEeeCCCcchhhhhhcccCCCEEEEEEEEEEeeccCCCCcc-ceEEEEEEEEEEEEEeecccceEEEEeecCc-e
Q psy17307 13 KSGVVALVPEESEDMWHAYNLIAEGDSVRASTIRKVQSESNTGSST-SSRVRTMLTISVESIDFDTQACVLRLKESED-M 90 (342)
Q Consensus 13 ~~~~v~l~~e~~dDlw~lynli~~gD~v~~~t~Rkv~~~~~~g~~~-~~~~~~~l~i~v~~~~f~~~~~~l~~~~~dd-~ 90 (342)
+++.|.+-....+|||.+-=.+..-+-..|--.=....++..|... .++..+.| -...|=| .
T Consensus 2 ~S~QitF~Ttqqg~~ytI~PqVTlt~aC~CqV~i~~~R~G~~GqS~SqQ~~tl~l----------------pANqpi~L~ 65 (110)
T 2xsk_A 2 GSSQITFNTTQQGDMYTIIPEVTLTQSXLXRVQILSLREGSSGQSQTKQEKTLSL----------------PANQPIALT 65 (110)
T ss_dssp -CCEEEEEEEEETTEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEEEEEEEE----------------CSSSEEECC
T ss_pred CcceEEEeccccCceEEEEEEEEeeccceeeEEEEEEEeccCCcceeeccceEec----------------CCCCcceee
Confidence 3456777777777777766555555554444433344455555322 33443222 1112433 3
Q ss_pred eeeeeccCCCCeEEE-EEe
Q psy17307 91 WHAYNLITEGDSVRA-STI 108 (342)
Q Consensus 91 ~~~~~li~~Gd~v~~-~t~ 108 (342)
-..+| |.+||.|.+ .|.
T Consensus 66 ~lsln-I~~~D~vkIiVTV 83 (110)
T 2xsk_A 66 KLSLN-ISPDDRVKIVVTV 83 (110)
T ss_dssp CEEEE-CCTTCEEEEEEEE
T ss_pred eEEEE-ecCCCcEEEEEEE
Confidence 45556 999999888 344
No 45
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=24.05 E-value=1.8e+02 Score=22.05 Aligned_cols=53 Identities=17% Similarity=0.093 Sum_probs=35.6
Q ss_pred ceEEEEEEEEEEEEEeecccceEEEEeecCc-eeeeeeccCCCCeEEEEEeeee
Q psy17307 59 SSRVRTMLTISVESIDFDTQACVLRLKESED-MWHAYNLITEGDSVRASTIRKV 111 (342)
Q Consensus 59 ~~~~~~~l~i~v~~~~f~~~~~~l~~~~~dd-~~~~~~li~~Gd~v~~~t~Rkv 111 (342)
|.+..=++.++|+..-+|+-+.+.--..--= -|---|...+||.|++...|+.
T Consensus 11 S~Km~KTivV~ve~~~~hp~Y~K~~kr~kk~~aHDe~n~~k~GD~V~I~E~RPl 64 (89)
T 1qd7_I 11 SDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHNEAKVGDIVKIMETRPL 64 (89)
T ss_pred ecCCCceEEEEEEEEEEcCccceEEeccEEEEEeCCccCCCCCCEEEEEEcccC
Confidence 4455557899999999999888765443100 0111245899999999766766
No 46
>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_W 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W ...
Probab=23.66 E-value=5 Score=30.00 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=35.4
Q ss_pred eEEEEEEEEEeeeccccE-EEEeceeeeccccccccceEEEEeecCceeEE
Q psy17307 127 TMLTISVESIDFDTQACV-LRLKGRNIQENQYVKMGAYHTLDLELNRKFEL 176 (342)
Q Consensus 127 ~~l~i~Ve~~ef~~~~~~-lri~G~~~~~~e~v~~G~~HTl~i~~~~~~~i 176 (342)
.+|.++.-..+|-..++- +|++|..+.|-+.|.+|+=|||---..=.+..
T Consensus 10 krLGvK~~~Gq~V~aG~IivRQRGtk~hPG~NVG~GkD~TLfAl~~G~V~f 60 (76)
T 3r8s_W 10 KRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKF 60 (76)
T ss_dssp CCCEESSCTTCEECTTCEEEECSSCSSEECTTEEECTTSCEEESSSEEEEE
T ss_pred ccceEEecCCeEEecCcEEEeccCccCcCCCCeeecCCCeEEEccCEEEEE
Confidence 356666666666444444 99999999999999999999986433333333
No 47
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Probab=22.54 E-value=2.8e+02 Score=21.66 Aligned_cols=53 Identities=15% Similarity=0.067 Sum_probs=35.8
Q ss_pred ceEEEEEEEEEEEEEeecccceEEEEeecCc-eeeeeeccCCCCeEEEEEeeee
Q psy17307 59 SSRVRTMLTISVESIDFDTQACVLRLKESED-MWHAYNLITEGDSVRASTIRKV 111 (342)
Q Consensus 59 ~~~~~~~l~i~v~~~~f~~~~~~l~~~~~dd-~~~~~~li~~Gd~v~~~t~Rkv 111 (342)
|.+..=++.++|+..-+|+-+.+.--..--= -|---|...+||.|++...|+.
T Consensus 12 S~Km~KTivV~ver~~~hpkY~K~~kr~kk~~aHDe~n~~k~GD~V~I~E~RPl 65 (105)
T 2vqe_Q 12 SDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPI 65 (105)
T ss_dssp EEEETTEEEEEEEEEEECTTTCCEEEEEEEEEEECTTCCCCTTCEEEEEEEEEE
T ss_pred ecCCCcEEEEEEEEEEEcCccceEEecceEEEEECCCCCCCCCCEEEEEEcccC
Confidence 4444457899999999999888765543100 0111145899999999766777
No 48
>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...
Probab=22.16 E-value=7.2 Score=29.72 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=36.9
Q ss_pred eEEEEEEEEEeeeccccE-EEEeceeeeccccccccceEEEEeecCceeEE
Q psy17307 127 TMLTISVESIDFDTQACV-LRLKGRNIQENQYVKMGAYHTLDLELNRKFEL 176 (342)
Q Consensus 127 ~~l~i~Ve~~ef~~~~~~-lri~G~~~~~~e~v~~G~~HTl~i~~~~~~~i 176 (342)
.+|.++.-..+|-..++- +|++|..+.|-+.|.+|+=|||---..=.+..
T Consensus 19 krLGvK~~~Gq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f 69 (85)
T 3v2d_0 19 KRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEF 69 (85)
T ss_dssp CCCEESSCTTCEECTTCEEEECSSCSEEECTTEEECTTCCEEESSSEEEEE
T ss_pred ccceeEecCCeEEcCCeEEEecCCccCcCCCCEeEcCCCeEEEecCEEEEE
Confidence 467777777777554444 99999999999999999999986443333443
Done!