RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17307
(342 letters)
>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId:
4932]}
Length = 135
Score = 136 bits (343), Expect = 3e-40
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
Query: 82 LRLKESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTMLTISVESIDFDTQ 141
L ++ ED++ Y ++ + D + + + S L I V S DFD +
Sbjct: 20 LLPEDKEDLFTVYQIVDKDDELIFKKKFTSKLDE--AGKKKSTDLVKLKIKVISEDFDMK 77
Query: 142 ACVLRLKGRNIQE-----NQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACN 194
L+ KG + + N + +G Y + L+ F + K ++ + + ACN
Sbjct: 78 DEYLKYKGVTVTDESGASNVDIPVGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEACN 135
Score = 96.4 bits (240), Expect = 3e-25
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 1 MKLVHKNIN-DKDKSGVVALVPEESEDMWHAYNLIAEGDSVRASTIRKVQSESNTGSSTS 59
MK++ + V+ L+PE+ ED++ Y ++ + D + + +
Sbjct: 1 MKVISLKKDSFNKGGAVITLLPEDKEDLFTVYQIVDKDDELIFKKKFTSKLDE--AGKKK 58
Query: 60 SRVRTMLTISVESIDFDTQACVLRLK 85
S L I V S DFD + L+ K
Sbjct: 59 STDLVKLKIKVISEDFDMKDEYLKYK 84
>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 126
Score = 135 bits (342), Expect = 3e-40
Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 74 DFDTQACVLRLKESEDMWHAYNLITEGDSVRASTIRKVQSESNTGSSTSSRVRTM-LTIS 132
D +R++ +D+W+ N+++EGD V A T R+V+ ++ S + + +
Sbjct: 7 DLKNSTYRIRIESLDDLWYLRNILSEGDEVSAITFRRVEESADVQRSRERERIPITIRLK 66
Query: 133 VESIDFDTQACVLRLKGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVA 192
VE I+F LR+ G I+ + K G + ++ + ++ + ++K EWD ++ ++ A
Sbjct: 67 VEKIEFQDFDNRLRILGTVIEGPEDTK-GKHQSITVTVDSEISITK-EWDDQHIDLLKEA 124
Query: 193 CN 194
+
Sbjct: 125 TD 126
Score = 96.7 bits (241), Expect = 2e-25
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 1 MKLVHKNINDKDKSGVVALVPEESEDMWHAYNLIAEGDSVRASTIRKVQSESNTGSSTSS 60
M+++ +++ K+ + E +D+W+ N+++EGD V A T R+V+ ++ S
Sbjct: 1 MRILEEDL----KNSTYRIRIESLDDLWYLRNILSEGDEVSAITFRRVEESADVQRSRER 56
Query: 61 RVRTM-LTISVESIDFDTQACVLRLK 85
+ + + VE I+F LR+
Sbjct: 57 ERIPITIRLKVEKIEFQDFDNRLRIL 82
>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae
[TaxId: 4932]}
Length = 142
Score = 110 bits (276), Expect = 3e-30
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 36/141 (25%)
Query: 195 IEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRDN-------------KDL 241
IE +D AAV++QEG+A++ L+T+S ++++ KIE ++P+K+R K +
Sbjct: 1 IEYKSDTAAVVLQEGIAHVCLVTSSSTILKQKIEYSMPKKKRTTDVLKFDEKTEKFYKAI 60
Query: 242 LKELLSPI-----------------------TTVEAVKMDNKVLLENKSKFLLVHSSSAF 278
+ + A + NK +L+NK F + H S+ +
Sbjct: 61 YSAMKKDLNFDKLKTIILCSPGFYAKILMDKIFQYAEEEHNKKILDNKGMFFIAHCSTGY 120
Query: 279 KHSLKEILADPTVTSKMQDTK 299
+ E+L +P SK+QDTK
Sbjct: 121 LQGINEVLKNPLYASKLQDTK 141
>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human
(Homo sapiens) [TaxId: 9606]}
Length = 111
Score = 50.1 bits (120), Expect = 1e-08
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 15/68 (22%)
Query: 290 TVTSKMQDTK---------------ALDPSRAFYGYRHVSAANESQAIDTLLIADCLFRN 334
TV S++ DTK +P RAFYG + V ANE+ AIDTLLI+D LFR+
Sbjct: 1 TVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDELFRH 60
Query: 335 SDLNERKK 342
D+ R +
Sbjct: 61 QDVATRSR 68
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae
[TaxId: 4932]}
Length = 104
Score = 47.4 bits (113), Expect = 9e-08
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 300 ALDPSRAFYGYRHVSAANESQAIDTLLIADCLFRNSDLNERKK 342
D +A+YG + V A E AI LL+ D + + ++ +R++
Sbjct: 15 NKDDDKAWYGEKEVVKAAEYGAISYLLLTDKVLHSDNIAQREE 57
>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 117
Score = 44.8 bits (106), Expect = 1e-06
Identities = 12/116 (10%), Positives = 26/116 (22%), Gaps = 17/116 (14%)
Query: 196 EKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRDNKDLLKELLSPITTVEAV 255
+ AV M E A I LI + + K + I
Sbjct: 2 KYVTVYTAVAMDEDEAQIFLIHPYGIQQVGTVYSGRSGKYAEGNYSEASYFDQIVN-ALK 60
Query: 256 KMDNKVLL----------------ENKSKFLLVHSSSAFKHSLKEILADPTVTSKM 295
N +++ + ++ ++ E + +
Sbjct: 61 NYSNSIIILGPGFARDRFARYCAQRGVNVIGSFPANRTDSGAVYEFITSADGAKLL 116
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 95
Score = 41.6 bits (98), Expect = 8e-06
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 299 KALDPSRAFYGYRHVSAANESQAIDTLLIADCLFRNSDLNE 339
A+ YG +A + A+ L+I D +FR D
Sbjct: 16 VAVKKDMGVYGRDQTESALQMGALSDLIITDEMFRTEDGRR 56
>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic
peptide chain release factor subunit 1, ERF1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 146
Score = 36.8 bits (85), Expect = 9e-04
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 300 ALDPSRAFYGYRHVSAANESQAIDTLLIADCLFRN 334
+ D + +G A E A++ L++ + L
Sbjct: 19 SQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIM 53
>d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF
{Human (Homo sapiens) [TaxId: 9606]}
Length = 100
Score = 27.6 bits (61), Expect = 0.87
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 260 KVLLENKSKFLLVHSSSAFKHSLKEILADPTVT 292
E+K KF + F L EI +PTV
Sbjct: 64 FPYEESKEKFGKPNKRKGFSEGLWEIENNPTVK 96
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.126 0.341
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,097,524
Number of extensions: 44993
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 13
Length of query: 342
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 256
Effective length of database: 1,226,816
Effective search space: 314064896
Effective search space used: 314064896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.3 bits)