Query psy17308
Match_columns 118
No_of_seqs 109 out of 1270
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 18:41:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17308.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17308hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 99.9 6.7E-25 2.3E-29 150.8 9.4 108 2-112 121-235 (303)
2 1okc_A ADP, ATP carrier protei 99.9 7.5E-25 2.6E-29 150.0 9.5 105 2-111 129-241 (297)
3 2lck_A Mitochondrial uncouplin 99.9 1.5E-24 5.3E-29 148.9 10.6 107 2-112 18-137 (303)
4 1okc_A ADP, ATP carrier protei 99.9 1.4E-24 4.8E-29 148.7 10.3 110 2-111 24-144 (297)
5 2acm_A Mucin-1; auto-catalytic 65.8 1.1 3.9E-05 22.9 -0.2 20 19-38 40-59 (66)
6 3i71_A Ethanolamine utilizatio 46.9 7.4 0.00025 19.8 1.0 26 83-108 15-40 (68)
7 2l5r_A Antimicrobial peptide a 29.5 22 0.00077 14.3 0.9 19 26-45 3-21 (26)
8 3tgu_G UQCRQ, mitochondrial ub 24.7 90 0.0031 16.8 3.2 38 32-69 32-69 (81)
9 3rea_A Protein NEF; HIV-1 NEF, 19.6 53 0.0018 20.2 1.6 26 14-39 37-62 (166)
10 3ik5_A Protein NEF; protein-pr 19.0 57 0.0019 19.6 1.6 27 13-39 16-42 (143)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.92 E-value=6.7e-25 Score=150.75 Aligned_cols=108 Identities=20% Similarity=0.309 Sum_probs=95.9
Q ss_pred cchhhhhhhhhccCC-------CcCcHHHHHHHHHHhcCchhhccchHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCCC
Q psy17308 2 LRDIIPFIRPKLGKL-------HEASCTDAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKDLFSPSL 74 (118)
Q Consensus 2 ~~~~~~~~k~~~~~~-------~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (118)
+..++|.+|+|+|.. +|+++++++++|+++||++|||||+.|++++.++..+++|.+||.+++.+.+....
T Consensus 121 ~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~-- 198 (303)
T 2lck_A 121 VAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLM-- 198 (303)
T ss_dssp HSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSC--
T ss_pred HcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--
Confidence 457899999998742 58999999999999999999999999999999999999999999999988754321
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhccHHHHHHHHHhccc
Q psy17308 75 HEQPFWIPLISGSVARIGAVTLVSPLELVRTKMQSEKM 112 (118)
Q Consensus 75 ~~~~~~~~~~~g~~a~~~~~~~~~P~dvvktrlq~~~~ 112 (118)
..+.+..+++|++||++++++++|+|+||+|||.+..
T Consensus 199 -~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~ 235 (303)
T 2lck_A 199 -TDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL 235 (303)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred -CCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc
Confidence 3456788999999999999999999999999999864
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.92 E-value=7.5e-25 Score=150.01 Aligned_cols=105 Identities=18% Similarity=0.258 Sum_probs=93.6
Q ss_pred cchhhhhhhhhccC--------CCcCcHHHHHHHHHHhcCchhhccchHHHHHhhhhhhHHHHHHHHHHHHHHHhhcCCC
Q psy17308 2 LRDIIPFIRPKLGK--------LHEASCTDAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKDLFSPS 73 (118)
Q Consensus 2 ~~~~~~~~k~~~~~--------~~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (118)
+..++|.+|+|+|. .+|+++++++++++++||++|||||+.|++++.++.++++|.+||.+++.+.+..
T Consensus 129 ~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~--- 205 (297)
T 1okc_A 129 FVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK--- 205 (297)
T ss_dssp HHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG---
T ss_pred HhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC---
Confidence 45789999999874 2589999999999999999999999999999999999999999999998765432
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhccHHHHHHHHHhcc
Q psy17308 74 LHEQPFWIPLISGSVARIGAVTLVSPLELVRTKMQSEK 111 (118)
Q Consensus 74 ~~~~~~~~~~~~g~~a~~~~~~~~~P~dvvktrlq~~~ 111 (118)
..+.+..+++|+++|++++++++|+|+||+|||++.
T Consensus 206 --~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~ 241 (297)
T 1okc_A 206 --NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQS 241 (297)
T ss_dssp --CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred --CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcC
Confidence 345677889999999999999999999999999875
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.92 E-value=1.5e-24 Score=148.95 Aligned_cols=107 Identities=18% Similarity=0.219 Sum_probs=96.3
Q ss_pred cchhhhhhhhhccCC-------------CcCcHHHHHHHHHHhcCchhhccchHHHHHhhhhhhHHHHHHHHHHHHHHHh
Q psy17308 2 LRDIIPFIRPKLGKL-------------HEASCTDAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKD 68 (118)
Q Consensus 2 ~~~~~~~~k~~~~~~-------------~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (118)
+.+++|++|+++|.. +|+++++++++++++||++|||||+.+++++.++..+++|++|+.+++.+.+
T Consensus 18 ~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~ 97 (303)
T 2lck_A 18 ITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTK 97 (303)
T ss_dssp TTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSC
T ss_pred HcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457899999998853 5889999999999999999999999999999999999999999999998865
Q ss_pred hcCCCCCCcchHHHHHHHHHHHHHHHHhhccHHHHHHHHHhccc
Q psy17308 69 LFSPSLHEQPFWIPLISGSVARIGAVTLVSPLELVRTKMQSEKM 112 (118)
Q Consensus 69 ~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~P~dvvktrlq~~~~ 112 (118)
... ..+.+..+++|++||++++++++|+|+||+|||.+..
T Consensus 98 ~~~----~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~ 137 (303)
T 2lck_A 98 GSE----HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQAR 137 (303)
T ss_dssp CCS----SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCS
T ss_pred CCc----CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccc
Confidence 422 3567889999999999999999999999999999864
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.92 E-value=1.4e-24 Score=148.67 Aligned_cols=110 Identities=19% Similarity=0.284 Sum_probs=93.6
Q ss_pred cchhhhhhhhhccCC----------CcCcHHHHHHHHHHhcCchhhccchHHHHHhhhhhhHHHHHHHHHHHHHHHhhcC
Q psy17308 2 LRDIIPFIRPKLGKL----------HEASCTDAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKDLFS 71 (118)
Q Consensus 2 ~~~~~~~~k~~~~~~----------~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (118)
+.+++|++|+++|.. +|+++++++++++++||++|||||+.+++++.++..+++|+.||.+++.+.....
T Consensus 24 ~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~ 103 (297)
T 1okc_A 24 AVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVD 103 (297)
T ss_dssp HTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 457899999998742 5899999999999999999999999999999999999999999999996544322
Q ss_pred CCCC-CcchHHHHHHHHHHHHHHHHhhccHHHHHHHHHhcc
Q psy17308 72 PSLH-EQPFWIPLISGSVARIGAVTLVSPLELVRTKMQSEK 111 (118)
Q Consensus 72 ~~~~-~~~~~~~~~~g~~a~~~~~~~~~P~dvvktrlq~~~ 111 (118)
.... ..+.+..+++|++||++++++++|+|+||+|||.+.
T Consensus 104 ~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~ 144 (297)
T 1okc_A 104 RHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADV 144 (297)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccc
Confidence 1110 123567899999999999999999999999999975
No 5
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=65.85 E-value=1.1 Score=22.89 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=17.3
Q ss_pred CcHHHHHHHHHHhcCchhhc
Q psy17308 19 ASCTDAFIKISRTEGILSLW 38 (118)
Q Consensus 19 ~~~~~~~~~i~~~eG~~gly 38 (118)
+++...+.+||+++|+.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 46888999999999998876
No 6
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=46.89 E-value=7.4 Score=19.82 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHH
Q psy17308 83 LISGSVARIGAVTLVSPLELVRTKMQ 108 (118)
Q Consensus 83 ~~~g~~a~~~~~~~~~P~dvvktrlq 108 (118)
+--|+++|-+++-+-.|+|..|..+.
T Consensus 15 ~~QGMTaGEVAA~f~w~Le~ar~aLe 40 (68)
T 3i71_A 15 VRQGMTAGEVAAHFGWPLEKARNALE 40 (68)
T ss_dssp CTTCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HhccccHHHHHHHhCCcHHHHHHHHH
Confidence 34467888888888999999998875
No 7
>2l5r_A Antimicrobial peptide alyteserin-1C; alpha helix, antimicrobial protein; NMR {Alytes obstetricans}
Probab=29.48 E-value=22 Score=14.28 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=10.5
Q ss_pred HHHHHhcCchhhccchHHHH
Q psy17308 26 IKISRTEGILSLWSGLAPTL 45 (118)
Q Consensus 26 ~~i~~~eG~~glyrG~~~~~ 45 (118)
++|++. |+..+.+|..+.+
T Consensus 3 keifka-glgslvkgiaahv 21 (26)
T 2l5r_A 3 KEIFKA-GLGSLVKGIAAHV 21 (26)
T ss_dssp HHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHH-hHHHHHHHHHHHH
Confidence 444443 6666666666544
No 8
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=24.70 E-value=90 Score=16.80 Aligned_cols=38 Identities=11% Similarity=0.380 Sum_probs=27.2
Q ss_pred cCchhhccchHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Q psy17308 32 EGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKDL 69 (118)
Q Consensus 32 eG~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (118)
.|+.-.||-+...+...+|...+.+.+|++.++.....
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l 69 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERL 69 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 35555666667777778888888888898887766543
No 9
>3rea_A Protein NEF; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 2.00A {Hiv-1 M} SCOP: d.102.1.1 PDB: 3rbb_A 3reb_A 1efn_B 1avv_A 1avz_A 2nef_A
Probab=19.61 E-value=53 Score=20.21 Aligned_cols=26 Identities=12% Similarity=0.031 Sum_probs=20.4
Q ss_pred cCCCcCcHHHHHHHHHHhcCchhhcc
Q psy17308 14 GKLHEASCTDAFIKISRTEGILSLWS 39 (118)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~eG~~glyr 39 (118)
.+.+|++.+|.-.-+..+.|+-|++-
T Consensus 37 RpmTYK~A~DlShFLKEKGGLeGl~y 62 (166)
T 3rea_A 37 RPMTYKAALDISHFLKEKGGLEGLIW 62 (166)
T ss_dssp BCCCHHHHHHHHHHHHHHCSSTTCBC
T ss_pred CCCChhhhhccchhhhhccCccceee
Confidence 45678888887777777889988775
No 10
>3ik5_A Protein NEF; protein-protein complex, cell membrane, lipoprotein, membran myristate; 2.05A {Simian immunodeficiency virus} SCOP: d.102.1.0 PDB: 3ioz_A
Probab=19.03 E-value=57 Score=19.63 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=20.4
Q ss_pred ccCCCcCcHHHHHHHHHHhcCchhhcc
Q psy17308 13 LGKLHEASCTDAFIKISRTEGILSLWS 39 (118)
Q Consensus 13 ~~~~~~~~~~~~~~~i~~~eG~~glyr 39 (118)
..+.+|++.+|.-.-+..+.|+.|++-
T Consensus 16 LRpmTyK~a~DlShFlKeKGGLeGl~y 42 (143)
T 3ik5_A 16 LRTMSYKLAIDMSHFIKEKGGLEGIYY 42 (143)
T ss_dssp CBCCCHHHHHHHHHHHHHHTCSTTCBC
T ss_pred CCCcchhhhhhcchhhhhcCCccceee
Confidence 346778888887777777888988764
Done!