RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17308
(118 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 55.0 bits (133), Expect = 3e-11
Identities = 22/46 (47%), Positives = 25/46 (54%)
Query: 23 DAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKD 68
D F KI + EGI L+ GL P LL PA YF TYE L+ L
Sbjct: 49 DCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLK 94
Score = 40.3 bits (95), Expect = 2e-05
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 78 PFWIPLISGSVARIGAVTLVSPLELVRTKMQS 109
F L++G +A A T+ PL++V+T++QS
Sbjct: 4 SFLASLLAGGIAGAIAATVTYPLDVVKTRLQS 35
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 42.6 bits (100), Expect = 8e-06
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 34 ILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKDLFSPSLHEQPFWIPLISGSVARIGA 93
I L+SG+ PTL+ +PA+ A+F + +L KL + ++ + + LIS S+A I A
Sbjct: 42 IKKLYSGILPTLVGTVPAS-AFFYCFYELSKKLLTEYRENISKTNLY--LISTSIAEITA 98
Query: 94 VTLVSPLELVRTKMQ 108
+ P E+V+ MQ
Sbjct: 99 CIVRLPFEIVKQNMQ 113
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 38.6 bits (90), Expect = 2e-04
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 17/116 (14%)
Query: 3 RDIIPFIRPKLGKLHE-ASCTDAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYE- 60
+D IP I K GK+ + + F ++S+ +G+LSLW G I YF T
Sbjct: 38 QDSIPEI--KSGKVPRYSGIVNCFRRVSKEQGVLSLWRG-------NTANVIRYFPTQAF 88
Query: 61 --QLRVKLKDLFSPSLHEQPFW----IPLISGSVARIGAVTLVSPLELVRTKMQSE 110
+ K++F + FW + ++SG +A ++ +V PL+ RT++ S+
Sbjct: 89 NFAFKDYFKNMFPKYNQKTDFWKFFGVNILSGGLAGASSLLIVYPLDFARTRLASD 144
Score = 27.8 bits (62), Expect = 1.3
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 23 DAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKDLFSPSLHEQPFWIP 82
D +KIS+ G LSL+ G ++ + AYF Y+ + LF + +
Sbjct: 158 DCLMKISKQTGFLSLYQGFGVSVQGIIVYRGAYFGLYDSAKAL---LFGNDKNTNILYKW 214
Query: 83 LISGSVARIGAVTLVSPLELVRTKM 107
++ +V I A + P + VR +M
Sbjct: 215 AVAQTVT-ILAGLISYPFDTVRRRM 238
>gnl|CDD|183851 PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional.
Length = 402
Score = 28.3 bits (64), Expect = 0.83
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 21 CTDAFIKISRTEGIL 35
DAF +SRTEGI+
Sbjct: 339 ALDAFFLLSRTEGII 353
>gnl|CDD|185246 PRK15348, PRK15348, type III secretion system lipoprotein SsaJ;
Provisional.
Length = 249
Score = 28.4 bits (63), Expect = 0.87
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 17/67 (25%)
Query: 25 FIKISRTEGILSLWSGLAPT-LLLAL----------PATIAYFVTY------EQLRVKLK 67
F+K R EG+LS G+ + +AL P+++A F+ Y E RVK+K
Sbjct: 106 FLKEQRIEGMLSQMEGVINAKVTIALPTYDEGSNASPSSVAVFIKYSPQVNMEAFRVKIK 165
Query: 68 DLFSPSL 74
DL S+
Sbjct: 166 DLIEMSI 172
>gnl|CDD|222603 pfam14221, DUF4330, Domain of unknown function (DUF4330). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria, archaea and
eukaryotes. Proteins in this family are typically
between 165 and 177 amino acids in length. There is a
single completely conserved residue G that may be
functionally important.
Length = 170
Score = 28.0 bits (63), Expect = 0.96
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 79 FWIPLISGSVARIGAVTLVSPLELVR 104
FW P +SG+VA+ G+ V +VR
Sbjct: 33 FWKPGLSGAVAQAGSEQPVEVDVIVR 58
>gnl|CDD|235356 PRK05170, PRK05170, hypothetical protein; Provisional.
Length = 147
Score = 26.0 bits (58), Expect = 3.5
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 13/39 (33%)
Query: 49 LPATIAYFVTYEQLRVKLKDLFSPSLHEQPFWIPLISGS 87
LP T AY + E KDL S W PLI+GS
Sbjct: 87 LPPTCAYRLLAEG-----KDLPS--------WHPLITGS 112
>gnl|CDD|235836 PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L;
Reviewed.
Length = 624
Score = 26.7 bits (60), Expect = 3.6
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 38 WSGLAPTLLLALPATIAYFVTY----EQLRVKLKDLFSPSLHEQPFWIPLISGSVARIGA 93
P ++LA+ + A + L + + + H P W+ L+ VA G
Sbjct: 453 AVMTLPLIVLAVLSVFAGALIVPPFLGVLPLTTELAHGEAEHHLPVWVALLPLVVALAGI 512
Query: 94 VT 95
Sbjct: 513 AL 514
>gnl|CDD|236387 PRK09130, PRK09130, NADH dehydrogenase subunit G; Validated.
Length = 687
Score = 26.3 bits (59), Expect = 4.2
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 7 PFIRPKLGKLHEASCTDAFIKI 28
P++R K GKL AS +AF I
Sbjct: 276 PYVR-KNGKLVPASWDEAFAAI 296
>gnl|CDD|227282 COG4946, COG4946, Uncharacterized protein related to the
periplasmic component of the Tol biopolymer transport
system [Function unknown].
Length = 668
Score = 26.3 bits (58), Expect = 4.6
Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 16/65 (24%)
Query: 55 YFVTYEQL-----RVKLKDLFSPSLHEQPFWIPLISGSVARIGAVTLVSPLELVRTKMQS 109
YF++ L RV FS +P+ + L G SP + S
Sbjct: 504 YFLSARSLDPSNDRVIFN--FSFQRVSKPYLVVLGRGY---------YSPFNQPPDEANS 552
Query: 110 EKMSY 114
E
Sbjct: 553 EAGEV 557
>gnl|CDD|226291 COG3768, COG3768, Predicted membrane protein [Function unknown].
Length = 350
Score = 26.2 bits (58), Expect = 5.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 83 LISGSVARIGAVTLVSPLELV 103
LIS S + VT VSPL LV
Sbjct: 204 LISRSAKEVSLVTAVSPLALV 224
>gnl|CDD|224297 COG1379, COG1379, PHP family phosphoesterase with a Zn ribbon
[General function prediction only].
Length = 403
Score = 25.5 bits (56), Expect = 9.2
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 11 PKLGKLHEASCTDAFIKISRTEGILSLW 38
P+LGK H +C+ + + S E W
Sbjct: 239 PRLGKYHLTACSRCYTRYSLEEAKSLRW 266
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.409
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,035,140
Number of extensions: 518651
Number of successful extensions: 486
Number of sequences better than 10.0: 1
Number of HSP's gapped: 484
Number of HSP's successfully gapped: 29
Length of query: 118
Length of database: 10,937,602
Length adjustment: 81
Effective length of query: 37
Effective length of database: 7,344,928
Effective search space: 271762336
Effective search space used: 271762336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.2 bits)