RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17308
(118 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 70.0 bits (172), Expect = 1e-15
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 23 DAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKDLFSPSLHEQPFWIP 82
+ + RTEG SL++GL L + Y+ +K ++
Sbjct: 52 GTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDS----VKQFYTKGSEHAGIGSR 107
Query: 83 LISGSVARIGAVTLVSPLELVRTKMQSE 110
L++GS AV + P ++V+ + Q++
Sbjct: 108 LLAGSTTGALAVAVAQPTDVVKVRFQAQ 135
Score = 66.2 bits (162), Expect = 3e-14
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 20 SCTDAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKDLFSPSLHEQPF 79
S +A+ I+R EGI LW G +P + A VTY+ ++ L L
Sbjct: 146 STVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN---LMTDDL 202
Query: 80 WIPLISGSVARIGAVTLVSPLELVRTKMQSEK 111
S A + SP+++V+T+ +
Sbjct: 203 PCHFTSAFGAGFCTTVIASPVDVVKTRYMNSA 234
Score = 52.7 bits (127), Expect = 2e-09
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 20 SCTDAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKDLF----SPSLH 75
S + + R EG + + G P+ L + FVTYEQL+ L + +P H
Sbjct: 240 SAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSREAPFHH 299
Score = 32.3 bits (74), Expect = 0.023
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 80 WIPLISGSVARIGAVTLVSPLELVRTKMQ 108
+ + A A + PL+ + ++Q
Sbjct: 2 TVKFLGAGTAACIADLITFPLDTAKVRLQ 30
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 67.3 bits (165), Expect = 8e-15
Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 23 DAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKDLFSPSLH-EQPFWI 81
D ++I + +G LS W G ++ P F ++ + + F
Sbjct: 55 DCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAG 114
Query: 82 PLISGSVARIGAVTLVSPLELVRTKMQSE 110
L SG A ++ V PL+ RT++ ++
Sbjct: 115 NLASGGAAGATSLCFVYPLDFARTRLAAD 143
Score = 66.5 bits (163), Expect = 2e-14
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 23 DAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKDLFSPSLHEQPFWIP 82
+ KI +++G+ L+ G ++ + AYF Y+ + L D + +
Sbjct: 158 NCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVH-----IIVS 212
Query: 83 LISGSVARIGAVTLVSPLELVRTKMQ 108
+ A + P + VR +M
Sbjct: 213 WMIAQTVTAVAGLVSYPFDTVRRRMM 238
Score = 43.8 bits (104), Expect = 2e-06
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 23 DAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLR 63
D + KI++ EG + + G +L + V Y++++
Sbjct: 255 DCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFV-LVLYDEIK 294
Score = 36.1 bits (84), Expect = 0.001
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 78 PFWIPLISGSVARIGAV--TLVSPLELVRTKMQSEKMSYFGK 117
F ++G VA A+ T V+P+E V+ +Q + S
Sbjct: 6 SFLKDFLAGGVA--AAISKTAVAPIERVKLLLQVQHASKQIS 45
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.002
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 27 KISRTEGILSLWS-GLAPTLLLALPATI 53
+ + + L L++ AP L A+ AT+
Sbjct: 21 ALKKLQASLKLYADDSAPAL--AIKATM 46
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.039
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 18/70 (25%)
Query: 35 LSLWSG-LAPTLLLALPATIAYFVTYEQLRVKLKDLFSPSLHEQPFWIPLISGSVARIGA 93
L+L G L LL+ P F QL+ + F+ L E P +
Sbjct: 9 LTLSHGSLEHVLLV--PTAS--FFIASQLQ----EQFNKILPE-P--------TEGFAAD 51
Query: 94 VTLVSPLELV 103
+P ELV
Sbjct: 52 DEPTTPAELV 61
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.11
Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 34/86 (39%)
Query: 31 TEGILSLWSGLAPT-----------LLLAL--------PATIAYF--VTYEQLRVKLK-- 67
+ +L + P L++ AT + V ++L ++
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 68 -DLFSPSLHEQPF----------WIP 82
++ P+ + + F IP
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIP 388
Score = 26.7 bits (58), Expect = 2.0
Identities = 14/121 (11%), Positives = 28/121 (23%), Gaps = 28/121 (23%)
Query: 25 FIKISRTEGIL----SLWSGLAPTLLLALPATIAYFVTYEQLRVKLKDLFSPSLHEQPF- 79
+ E +L L + P + + ++ +L+ L +E
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 80 -----WIP------------LI---SGSVARIGAVTLVSPLELVRTKM---QSEKMSYFG 116
L+ V + + + L M E S
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 117 K 117
K
Sbjct: 309 K 309
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
2.50A {Thermus thermophilus}
Length = 418
Score = 25.3 bits (56), Expect = 6.9
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 23 DAFIKISRTEGIL 35
+ F ++R EGI+
Sbjct: 358 EGFKLLARLEGII 370
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase,
tryptophan biosynthesis, pyridoxal phosphate; HET: IPL
PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB:
1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B*
2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B*
1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...
Length = 396
Score = 25.2 bits (56), Expect = 7.1
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 23 DAFIKISRTEGIL 35
+AF + R EGI+
Sbjct: 333 EAFKTLCRHEGII 345
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan
biosynthesis, structural genomics; 2.20A {Mycobacterium
tuberculosis} PDB: 2o2j_A
Length = 422
Score = 24.9 bits (55), Expect = 7.5
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 23 DAFIKISRTEGIL 35
DAF + R EGI+
Sbjct: 360 DAFGLLCRMEGII 372
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural
genomics/proteomics initiative, structural genomics,
lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP:
c.79.1.1 PDB: 1wdw_B*
Length = 388
Score = 24.8 bits (55), Expect = 8.0
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 23 DAFIKISRTEGIL 35
AF ++SRTEGI+
Sbjct: 329 KAFHELSRTEGII 341
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.409
Gapped
Lambda K H
0.267 0.0808 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,734,893
Number of extensions: 90081
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 19
Length of query: 118
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,440,192
Effective search space: 164287104
Effective search space used: 164287104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)