RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17308
         (118 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 49.3 bits (116), Expect = 9e-09
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 20  SCTDAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQL 62
              D + KI++ EG  + + G    +L  +       V Y+++
Sbjct: 251 GTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAF-VLVLYDEI 292



 Score = 41.2 bits (95), Expect = 6e-06
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 78  PFWIPLISGSVARIGAVTLVSPLELVRTKMQSEKMS 113
            F    ++G VA   + T V+P+E V+  +Q +  S
Sbjct: 5   SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHAS 40


>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
           amagasakiense [TaxId: 63559]}
          Length = 391

 Score = 26.0 bits (56), Expect = 1.3
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 17  HEASCTDAFIKISRTEGILSLWSGLAPTLLLALPATIAY 55
                 DA  K+  T+G+  +   + PT + +   TI Y
Sbjct: 335 ELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFY 373


>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
           niger [TaxId: 5061]}
          Length = 385

 Score = 24.5 bits (52), Expect = 4.6
 Identities = 8/52 (15%), Positives = 20/52 (38%)

Query: 17  HEASCTDAFIKISRTEGILSLWSGLAPTLLLALPATIAYFVTYEQLRVKLKD 68
                 D   ++   +G+  +   + PT + +   T+ Y +  +     L+D
Sbjct: 329 EMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILED 380


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0399    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 418,201
Number of extensions: 16650
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 4
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.8 bits)