Query psy17309
Match_columns 824
No_of_seqs 641 out of 4165
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 18:42:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17309.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17309hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441|consensus 100.0 2.1E-85 4.5E-90 736.5 49.0 518 217-742 46-568 (571)
2 PHA02713 hypothetical protein; 100.0 6.2E-78 1.4E-82 680.9 43.9 483 218-730 37-543 (557)
3 PHA03098 kelch-like protein; P 100.0 3.8E-70 8.1E-75 625.9 47.1 495 218-737 22-528 (534)
4 PHA02790 Kelch-like protein; P 100.0 1.9E-68 4.1E-73 596.2 44.5 442 217-727 31-477 (480)
5 KOG4441|consensus 100.0 7.2E-51 1.6E-55 457.3 32.1 491 224-805 46-567 (571)
6 PHA02713 hypothetical protein; 100.0 1.5E-44 3.2E-49 409.0 41.1 459 223-796 35-546 (557)
7 PLN02153 epithiospecifier prot 100.0 1.7E-39 3.6E-44 350.1 36.7 178 496-673 125-339 (341)
8 PLN02193 nitrile-specifier pro 100.0 6.7E-39 1.5E-43 357.4 42.7 222 499-721 219-469 (470)
9 PLN02153 epithiospecifier prot 100.0 1.4E-38 3.1E-43 342.8 33.6 274 482-755 4-326 (341)
10 PHA03098 kelch-like protein; P 100.0 3E-38 6.6E-43 362.2 34.3 473 222-792 19-520 (534)
11 PLN02193 nitrile-specifier pro 100.0 1.2E-37 2.7E-42 347.2 37.3 293 459-753 120-453 (470)
12 PHA02790 Kelch-like protein; P 100.0 7.6E-38 1.6E-42 349.9 33.0 428 223-790 30-477 (480)
13 TIGR03547 muta_rot_YjhT mutatr 100.0 1.4E-36 2.9E-41 328.9 31.0 258 493-754 2-332 (346)
14 TIGR03548 mutarot_permut cycli 100.0 3E-36 6.4E-41 322.5 30.5 256 498-754 3-314 (323)
15 KOG4693|consensus 100.0 3.1E-35 6.7E-40 276.6 21.8 267 486-754 3-313 (392)
16 PRK14131 N-acetylneuraminic ac 100.0 1.3E-34 2.9E-39 315.2 29.9 259 492-754 22-354 (376)
17 TIGR03547 muta_rot_YjhT mutatr 100.0 4.7E-34 1E-38 309.1 32.9 254 459-718 17-344 (346)
18 TIGR03548 mutarot_permut cycli 100.0 2.3E-34 5.1E-39 307.8 29.9 246 459-707 13-314 (323)
19 PRK14131 N-acetylneuraminic ac 100.0 3.2E-33 6.9E-38 304.3 33.1 262 459-726 38-374 (376)
20 KOG4693|consensus 100.0 2E-32 4.3E-37 257.7 21.2 249 459-707 23-313 (392)
21 KOG0379|consensus 100.0 4.4E-28 9.6E-33 269.2 26.7 258 492-749 54-334 (482)
22 KOG4152|consensus 100.0 3.6E-28 7.9E-33 247.8 19.0 137 14-152 10-157 (830)
23 KOG0379|consensus 100.0 3E-27 6.5E-32 262.6 27.6 155 495-649 160-328 (482)
24 KOG1230|consensus 100.0 4.6E-27 1E-31 234.9 19.4 236 492-727 60-347 (521)
25 KOG1230|consensus 99.9 1.5E-25 3.2E-30 224.2 22.3 299 459-761 78-461 (521)
26 KOG4152|consensus 99.9 4.6E-26 1E-30 232.5 18.8 263 486-750 18-339 (830)
27 KOG4350|consensus 99.8 1E-19 2.2E-24 181.4 5.3 197 217-418 54-254 (620)
28 COG3055 Uncharacterized protei 99.8 3.9E-17 8.4E-22 162.6 21.1 261 492-758 30-364 (381)
29 KOG2075|consensus 99.7 1.7E-17 3.7E-22 170.6 8.8 204 216-421 128-344 (521)
30 COG3055 Uncharacterized protei 99.7 9.2E-15 2E-19 145.8 22.0 233 482-717 67-371 (381)
31 PF07707 BACK: BTB And C-termi 99.7 1.4E-16 3E-21 139.6 6.4 102 309-411 1-102 (103)
32 smart00875 BACK BTB And C-term 99.5 4E-14 8.6E-19 123.6 11.3 99 309-409 1-99 (101)
33 KOG2437|consensus 99.4 1.1E-13 2.3E-18 142.7 4.2 233 495-727 257-541 (723)
34 KOG2437|consensus 99.4 3.4E-13 7.4E-18 139.0 7.4 163 46-208 273-472 (723)
35 PF13964 Kelch_6: Kelch motif 99.4 9.7E-13 2.1E-17 97.5 6.0 49 84-132 1-50 (50)
36 KOG4682|consensus 99.3 2.9E-12 6.4E-17 129.0 7.8 151 228-379 89-245 (488)
37 PF13964 Kelch_6: Kelch motif 99.2 3.1E-11 6.7E-16 89.4 5.9 48 131-178 1-49 (50)
38 PF13415 Kelch_3: Galactose ox 99.1 7.2E-11 1.6E-15 86.8 5.9 47 94-140 1-49 (49)
39 PF01344 Kelch_1: Kelch motif; 99.1 1.3E-10 2.9E-15 84.9 5.2 46 84-129 1-47 (47)
40 PF07646 Kelch_2: Kelch motif; 99.1 2.5E-10 5.4E-15 83.9 6.0 46 84-129 1-49 (49)
41 KOG4591|consensus 99.1 2.2E-10 4.8E-15 104.3 6.4 141 219-363 81-223 (280)
42 PF13418 Kelch_4: Galactose ox 99.0 2.2E-10 4.8E-15 84.5 3.9 46 84-129 1-48 (49)
43 PF01344 Kelch_1: Kelch motif; 99.0 3.3E-10 7.2E-15 82.8 4.7 46 131-176 1-47 (47)
44 PF07646 Kelch_2: Kelch motif; 98.9 1.9E-09 4.1E-14 79.2 6.3 46 131-176 1-49 (49)
45 PF13854 Kelch_5: Kelch motif 98.9 2.3E-09 4.9E-14 75.6 5.6 40 81-120 1-42 (42)
46 PF13418 Kelch_4: Galactose ox 98.9 1.1E-09 2.4E-14 80.7 4.0 47 131-177 1-49 (49)
47 PLN02772 guanylate kinase 98.9 1.2E-08 2.7E-13 107.1 12.3 112 82-195 22-146 (398)
48 PF13415 Kelch_3: Galactose ox 98.8 1.3E-08 2.9E-13 74.7 6.1 47 696-742 1-49 (49)
49 smart00612 Kelch Kelch domain. 98.8 9.3E-09 2E-13 75.1 4.6 47 96-142 1-47 (47)
50 smart00612 Kelch Kelch domain. 98.6 6.5E-08 1.4E-12 70.6 5.2 47 557-603 1-47 (47)
51 PF13854 Kelch_5: Kelch motif 98.6 1.3E-07 2.7E-12 66.7 5.3 40 128-167 1-42 (42)
52 PLN02772 guanylate kinase 98.5 5.5E-07 1.2E-11 94.9 10.2 73 45-119 34-109 (398)
53 PF07250 Glyoxal_oxid_N: Glyox 98.5 3.1E-06 6.8E-11 84.1 13.9 148 526-686 48-211 (243)
54 TIGR01640 F_box_assoc_1 F-box 98.4 7.5E-05 1.6E-09 75.8 22.9 195 524-722 14-230 (230)
55 KOG0783|consensus 98.3 7.3E-07 1.6E-11 98.2 6.1 115 226-340 723-851 (1267)
56 PF00651 BTB: BTB/POZ domain; 98.3 5.7E-08 1.2E-12 86.1 -2.0 85 219-303 23-110 (111)
57 PF07250 Glyoxal_oxid_N: Glyox 98.2 4.8E-05 1.1E-09 75.7 15.2 150 571-733 46-211 (243)
58 smart00225 BTB Broad-Complex, 98.1 4.8E-07 1E-11 76.4 0.1 75 223-297 15-90 (90)
59 TIGR01640 F_box_assoc_1 F-box 98.1 0.00018 3.9E-09 72.9 18.6 168 554-730 4-187 (230)
60 PRK11138 outer membrane biogen 97.8 0.017 3.7E-07 63.8 29.5 249 455-749 65-341 (394)
61 PRK11138 outer membrane biogen 97.8 0.012 2.5E-07 65.1 27.2 231 475-749 130-382 (394)
62 PF03089 RAG2: Recombination a 97.7 0.0019 4E-08 63.7 16.8 182 558-741 41-273 (337)
63 PF13360 PQQ_2: PQQ-like domai 97.7 0.046 1E-06 55.5 28.2 206 476-723 4-233 (238)
64 TIGR03300 assembly_YfgL outer 97.5 0.15 3.2E-06 56.0 29.9 230 475-749 75-326 (377)
65 TIGR03300 assembly_YfgL outer 97.5 0.078 1.7E-06 58.2 27.6 231 475-749 115-367 (377)
66 PF03089 RAG2: Recombination a 97.4 0.027 5.9E-07 55.8 20.1 154 460-613 39-230 (337)
67 PF07893 DUF1668: Protein of u 97.1 0.018 3.9E-07 61.8 16.7 122 601-733 75-220 (342)
68 PF13360 PQQ_2: PQQ-like domai 97.1 0.28 6.1E-06 49.7 24.8 174 524-726 3-199 (238)
69 PF07893 DUF1668: Protein of u 96.8 0.043 9.3E-07 58.9 16.8 121 554-685 75-221 (342)
70 PF08450 SGL: SMP-30/Gluconola 96.6 0.26 5.7E-06 50.4 20.4 200 473-702 20-243 (246)
71 PF08450 SGL: SMP-30/Gluconola 96.5 0.53 1.2E-05 48.1 21.2 202 508-742 11-232 (246)
72 TIGR03866 PQQ_ABC_repeats PQQ- 96.1 2.3 5E-05 44.4 26.4 174 475-676 11-190 (300)
73 KOG0310|consensus 95.9 0.8 1.7E-05 49.0 19.0 185 508-730 79-276 (487)
74 cd00216 PQQ_DH Dehydrogenases 95.9 4.2 9E-05 46.3 26.7 254 475-750 120-455 (488)
75 PF12768 Rax2: Cortical protei 95.9 0.11 2.4E-06 53.5 12.5 109 569-682 14-130 (281)
76 TIGR03866 PQQ_ABC_repeats PQQ- 95.8 1.4 3E-05 46.1 21.2 184 510-724 2-191 (300)
77 PF12768 Rax2: Cortical protei 95.6 0.17 3.7E-06 52.1 12.7 109 522-635 14-130 (281)
78 PF02191 OLF: Olfactomedin-lik 95.4 0.68 1.5E-05 47.0 16.1 183 508-703 30-237 (250)
79 cd00094 HX Hemopexin-like repe 95.2 1.2 2.6E-05 43.5 16.7 143 551-723 12-178 (194)
80 cd00216 PQQ_DH Dehydrogenases 95.2 4.5 9.8E-05 46.0 23.6 118 503-633 56-192 (488)
81 cd00094 HX Hemopexin-like repe 95.1 1.2 2.5E-05 43.7 16.3 142 504-676 12-178 (194)
82 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.1 7.3 0.00016 44.6 25.0 118 504-633 65-198 (527)
83 KOG2055|consensus 95.1 1.6 3.5E-05 46.5 17.5 183 508-720 224-417 (514)
84 PF05096 Glu_cyclase_2: Glutam 95.0 0.19 4.1E-06 50.6 10.1 152 550-724 49-207 (264)
85 PF11822 DUF3342: Domain of un 94.9 0.019 4.1E-07 58.8 2.9 82 244-357 43-125 (317)
86 cd00200 WD40 WD40 domain, foun 94.8 5.2 0.00011 40.6 24.7 224 461-722 22-251 (289)
87 PRK04792 tolB translocation pr 94.6 9.1 0.0002 43.0 23.8 191 523-728 197-390 (448)
88 PRK13684 Ycf48-like protein; P 94.5 8 0.00017 41.5 23.8 214 483-728 74-296 (334)
89 PRK00178 tolB translocation pr 94.4 9.4 0.0002 42.6 23.7 147 571-729 223-372 (430)
90 PF05096 Glu_cyclase_2: Glutam 94.4 0.68 1.5E-05 46.7 12.5 152 503-676 49-206 (264)
91 PF03178 CPSF_A: CPSF A subuni 94.1 2.2 4.8E-05 45.5 17.0 137 556-703 42-190 (321)
92 PRK04922 tolB translocation pr 94.1 10 0.00022 42.4 23.0 146 570-728 227-376 (433)
93 cd00200 WD40 WD40 domain, foun 94.1 6.5 0.00014 39.9 20.3 185 509-724 21-211 (289)
94 smart00284 OLF Olfactomedin-li 94.0 5.9 0.00013 40.0 18.2 182 509-702 35-241 (255)
95 COG1520 FOG: WD40-like repeat 93.9 9.8 0.00021 41.5 21.9 225 476-719 79-319 (370)
96 TIGR02800 propeller_TolB tol-p 93.8 11 0.00024 41.7 22.7 148 524-682 214-363 (417)
97 COG4257 Vgb Streptogramin lyas 93.8 8.3 0.00018 38.8 21.1 234 476-744 84-326 (353)
98 PF02191 OLF: Olfactomedin-lik 93.6 7.8 0.00017 39.4 18.6 184 458-656 29-237 (250)
99 KOG0310|consensus 93.6 7.7 0.00017 41.9 18.7 214 459-708 79-302 (487)
100 PF12217 End_beta_propel: Cata 93.4 9 0.0002 38.0 19.1 159 499-657 75-257 (367)
101 COG4257 Vgb Streptogramin lyas 93.4 5.8 0.00012 39.9 16.3 182 476-681 125-313 (353)
102 PRK13684 Ycf48-like protein; P 93.3 13 0.00029 39.8 22.2 194 484-705 118-322 (334)
103 COG1520 FOG: WD40-like repeat 93.3 15 0.00032 40.1 21.9 152 505-679 65-225 (370)
104 PRK00178 tolB translocation pr 93.1 18 0.00038 40.4 26.9 181 524-720 223-406 (430)
105 PRK05137 tolB translocation pr 93.0 18 0.00039 40.4 27.4 191 524-727 226-419 (435)
106 PF14870 PSII_BNR: Photosynthe 92.9 14 0.0003 38.7 22.0 215 483-728 45-269 (302)
107 smart00284 OLF Olfactomedin-li 92.9 8.1 0.00018 39.1 17.1 169 555-735 34-222 (255)
108 TIGR02800 propeller_TolB tol-p 92.8 19 0.0004 40.0 23.7 191 523-728 169-362 (417)
109 PF09910 DUF2139: Uncharacteri 92.7 2.5 5.4E-05 42.9 12.9 154 82-240 30-225 (339)
110 PRK04922 tolB translocation pr 92.4 21 0.00046 39.8 26.3 183 523-722 227-413 (433)
111 PRK05137 tolB translocation pr 92.1 23 0.0005 39.6 23.5 190 523-727 181-373 (435)
112 PF03178 CPSF_A: CPSF A subuni 92.1 6.4 0.00014 41.9 16.7 137 509-657 42-190 (321)
113 PTZ00421 coronin; Provisional 91.8 27 0.00059 39.6 23.9 194 508-726 87-296 (493)
114 PF09910 DUF2139: Uncharacteri 91.2 19 0.00042 36.7 17.5 147 548-702 39-219 (339)
115 PLN00181 protein SPA1-RELATED; 91.0 19 0.00041 43.9 21.2 180 509-721 545-739 (793)
116 KOG2055|consensus 91.0 7.2 0.00016 41.9 14.7 147 555-722 224-376 (514)
117 PF01466 Skp1: Skp1 family, di 90.9 0.43 9.3E-06 38.7 4.6 39 271-309 10-48 (78)
118 PF14870 PSII_BNR: Photosynthe 90.8 20 0.00044 37.5 18.0 199 482-705 88-295 (302)
119 PRK11028 6-phosphogluconolacto 90.6 27 0.00058 37.3 26.8 183 475-679 12-213 (330)
120 PRK04792 tolB translocation pr 90.3 35 0.00076 38.3 27.7 148 524-682 242-391 (448)
121 PRK03629 tolB translocation pr 90.3 34 0.00075 38.1 24.3 204 510-728 166-371 (429)
122 KOG0772|consensus 90.2 33 0.00071 37.7 18.8 268 507-816 225-521 (641)
123 PLN00181 protein SPA1-RELATED; 90.0 54 0.0012 40.0 24.3 142 508-674 587-739 (793)
124 PF02897 Peptidase_S9_N: Proly 89.5 38 0.00082 37.5 21.7 240 471-727 146-411 (414)
125 TIGR03075 PQQ_enz_alc_DH PQQ-d 89.3 9.7 0.00021 43.6 15.7 117 551-679 65-197 (527)
126 KOG1987|consensus 89.3 0.68 1.5E-05 48.8 6.1 118 223-340 116-239 (297)
127 PF10282 Lactonase: Lactonase, 89.0 37 0.00079 36.6 25.1 246 464-731 3-288 (345)
128 PTZ00420 coronin; Provisional 89.0 50 0.0011 38.1 22.2 191 509-726 87-299 (568)
129 KOG2048|consensus 88.5 50 0.0011 37.5 23.8 239 473-744 45-302 (691)
130 KOG1036|consensus 88.4 18 0.00038 37.0 14.5 157 571-749 35-204 (323)
131 PRK02889 tolB translocation pr 88.0 49 0.0011 36.9 21.5 191 523-728 175-368 (427)
132 PF08268 FBA_3: F-box associat 88.0 4.8 0.0001 36.3 9.8 81 646-727 2-87 (129)
133 KOG1036|consensus 87.6 33 0.00072 35.1 15.8 132 524-676 35-166 (323)
134 PRK04043 tolB translocation pr 87.0 55 0.0012 36.3 23.4 184 524-723 213-403 (419)
135 PF02897 Peptidase_S9_N: Proly 86.7 52 0.0011 36.4 19.4 204 508-720 134-357 (414)
136 KOG2075|consensus 85.6 2 4.2E-05 46.4 6.5 36 302-337 183-218 (521)
137 PLN02919 haloacid dehalogenase 85.4 1.1E+02 0.0024 38.4 29.7 226 473-723 588-891 (1057)
138 KOG0316|consensus 85.1 27 0.00059 34.3 13.2 108 601-725 69-178 (307)
139 KOG2716|consensus 85.0 1 2.2E-05 44.4 4.0 58 246-304 46-105 (230)
140 KOG3473|consensus 84.8 0.22 4.8E-06 40.7 -0.6 63 226-288 35-111 (112)
141 KOG0511|consensus 84.5 1.5 3.2E-05 45.5 4.9 116 231-347 314-440 (516)
142 KOG3545|consensus 84.4 35 0.00077 34.1 14.1 197 478-702 13-235 (249)
143 PF10282 Lactonase: Lactonase, 84.4 64 0.0014 34.7 25.1 245 459-728 48-332 (345)
144 KOG0289|consensus 83.4 39 0.00084 36.3 14.6 140 548-706 350-497 (506)
145 PLN00033 photosystem II stabil 83.2 77 0.0017 34.8 21.9 195 483-704 164-389 (398)
146 KOG0316|consensus 83.1 51 0.0011 32.6 16.7 187 508-722 70-259 (307)
147 PRK11028 6-phosphogluconolacto 82.6 71 0.0015 34.0 27.5 234 475-734 57-320 (330)
148 PF13088 BNR_2: BNR repeat-lik 82.6 62 0.0014 33.3 19.3 217 483-701 28-275 (275)
149 KOG0646|consensus 81.6 24 0.00053 38.1 12.5 200 501-724 84-311 (476)
150 PRK03629 tolB translocation pr 80.6 1E+02 0.0022 34.4 28.4 185 524-722 223-408 (429)
151 PRK10115 protease 2; Provision 80.6 1.3E+02 0.0029 35.8 27.8 250 461-728 139-402 (686)
152 PF08268 FBA_3: F-box associat 80.5 13 0.00028 33.4 9.2 82 92-174 3-89 (129)
153 PF13088 BNR_2: BNR repeat-lik 80.2 75 0.0016 32.7 19.7 175 555-732 58-254 (275)
154 PLN00033 photosystem II stabil 78.8 1.1E+02 0.0023 33.7 26.3 216 482-728 117-364 (398)
155 PLN03215 ascorbic acid mannose 78.6 83 0.0018 34.0 15.6 96 580-684 189-305 (373)
156 KOG1724|consensus 77.6 2.5 5.5E-05 39.4 3.5 60 246-305 44-128 (162)
157 KOG1665|consensus 77.5 3.6 7.9E-05 39.5 4.5 51 248-298 54-105 (302)
158 PF06433 Me-amine-dh_H: Methyl 77.5 28 0.0006 36.8 11.4 232 471-724 63-324 (342)
159 PRK04043 tolB translocation pr 77.3 1.2E+02 0.0027 33.6 21.6 149 571-729 213-366 (419)
160 KOG0296|consensus 76.5 1.1E+02 0.0023 32.4 17.1 143 555-722 75-222 (399)
161 TIGR03074 PQQ_membr_DH membran 75.8 1.9E+02 0.0041 34.9 25.0 119 502-633 188-353 (764)
162 KOG1332|consensus 75.5 91 0.002 31.1 14.9 102 604-729 176-296 (299)
163 PRK02889 tolB translocation pr 75.0 1.4E+02 0.0031 33.1 25.1 182 524-720 220-403 (427)
164 PF02214 BTB_2: BTB/POZ domain 74.9 0.91 2E-05 38.3 -0.1 52 244-296 40-94 (94)
165 KOG2838|consensus 74.6 2.3 5E-05 42.0 2.5 67 245-311 299-395 (401)
166 PF14583 Pectate_lyase22: Olig 74.1 1.4E+02 0.0029 32.4 15.6 232 460-706 47-303 (386)
167 KOG2321|consensus 73.9 30 0.00064 38.5 10.7 104 602-723 145-261 (703)
168 KOG0783|consensus 73.7 8.2 0.00018 44.6 6.7 49 248-296 612-681 (1267)
169 PF14583 Pectate_lyase22: Olig 73.5 46 0.001 35.8 12.0 231 508-752 46-302 (386)
170 PRK01742 tolB translocation pr 73.1 1.6E+02 0.0035 32.8 21.8 182 524-727 184-368 (429)
171 KOG0281|consensus 73.0 1.3E+02 0.0027 31.6 19.9 110 593-721 320-429 (499)
172 PLN02919 haloacid dehalogenase 72.6 2.7E+02 0.0058 35.2 27.7 195 508-727 579-840 (1057)
173 TIGR02658 TTQ_MADH_Hv methylam 72.6 1.4E+02 0.0031 32.0 24.6 67 649-722 259-332 (352)
174 KOG0318|consensus 72.2 25 0.00054 38.6 9.6 107 84-195 442-553 (603)
175 PTZ00421 coronin; Provisional 71.5 1.9E+02 0.0041 32.9 19.7 152 509-679 138-296 (493)
176 PF07707 BACK: BTB And C-termi 70.3 12 0.00025 31.9 5.8 60 277-337 1-75 (103)
177 KOG0649|consensus 69.5 1.2E+02 0.0027 30.1 13.6 149 535-705 100-264 (325)
178 TIGR03074 PQQ_membr_DH membran 67.2 2.9E+02 0.0062 33.4 19.6 117 550-679 189-352 (764)
179 KOG4350|consensus 66.8 7.7 0.00017 40.8 4.4 32 272-303 145-176 (620)
180 PF02239 Cytochrom_D1: Cytochr 65.2 96 0.0021 33.7 12.8 179 523-724 15-206 (369)
181 COG5201 SKP1 SCF ubiquitin lig 65.2 3.9 8.4E-05 35.5 1.6 34 272-305 90-123 (158)
182 COG3823 Glutamine cyclotransfe 64.8 1.4E+02 0.003 29.2 11.8 160 503-684 50-218 (262)
183 PF12217 End_beta_propel: Cata 64.7 1.6E+02 0.0035 29.6 14.9 201 505-705 22-258 (367)
184 smart00512 Skp1 Found in Skp1 64.0 4.1 8.9E-05 35.1 1.6 44 246-289 42-104 (104)
185 KOG0286|consensus 63.0 1.9E+02 0.0041 29.8 20.8 178 508-719 108-302 (343)
186 TIGR02658 TTQ_MADH_Hv methylam 62.5 2.3E+02 0.0049 30.6 26.8 119 458-585 11-142 (352)
187 KOG0649|consensus 61.1 1.8E+02 0.004 29.0 13.2 128 508-657 126-263 (325)
188 PTZ00420 coronin; Provisional 60.7 3.2E+02 0.0069 31.7 20.1 146 509-676 138-296 (568)
189 PRK10115 protease 2; Provision 60.1 3.6E+02 0.0079 32.2 22.3 209 508-727 137-353 (686)
190 PF00651 BTB: BTB/POZ domain; 59.8 14 0.00031 31.8 4.4 31 305-335 80-110 (111)
191 PLN03215 ascorbic acid mannose 59.8 2.6E+02 0.0056 30.3 17.8 102 62-176 183-305 (373)
192 COG3386 Gluconolactonase [Carb 59.2 2.4E+02 0.0052 29.8 20.0 205 475-706 47-277 (307)
193 KOG1332|consensus 58.7 73 0.0016 31.7 9.0 102 510-635 176-296 (299)
194 KOG2321|consensus 58.5 64 0.0014 36.1 9.5 118 498-630 133-262 (703)
195 PF06433 Me-amine-dh_H: Methyl 57.4 70 0.0015 33.9 9.4 234 475-723 17-280 (342)
196 KOG0266|consensus 56.5 3.3E+02 0.0072 30.6 21.6 172 524-721 225-410 (456)
197 KOG0278|consensus 55.9 1.4E+02 0.0029 30.0 10.4 121 474-614 164-290 (334)
198 KOG0291|consensus 53.5 4.3E+02 0.0094 31.0 21.1 177 509-707 319-500 (893)
199 KOG2048|consensus 53.1 4.1E+02 0.0089 30.6 23.5 112 602-728 393-513 (691)
200 KOG0286|consensus 52.1 2.9E+02 0.0062 28.5 21.6 178 458-658 107-293 (343)
201 KOG0266|consensus 51.4 4E+02 0.0086 29.9 15.8 142 555-721 214-365 (456)
202 KOG0315|consensus 50.7 2.8E+02 0.006 27.9 20.7 242 477-744 63-310 (311)
203 KOG1898|consensus 49.9 5.8E+02 0.013 31.4 16.1 161 572-743 854-1029(1205)
204 KOG0289|consensus 49.9 3.8E+02 0.0082 29.2 17.2 138 501-657 350-494 (506)
205 KOG0274|consensus 48.8 4.7E+02 0.01 30.1 19.2 169 524-722 311-484 (537)
206 KOG4378|consensus 48.8 4.2E+02 0.009 29.4 15.5 88 619-721 188-281 (673)
207 KOG2715|consensus 48.7 13 0.00028 34.2 2.2 57 248-304 66-122 (210)
208 KOG3545|consensus 46.6 3.2E+02 0.007 27.5 17.5 185 526-735 12-216 (249)
209 PRK01742 tolB translocation pr 43.9 4.9E+02 0.011 28.9 26.2 163 524-707 228-393 (429)
210 KOG0291|consensus 42.4 6.4E+02 0.014 29.7 23.5 159 547-727 308-473 (893)
211 KOG3881|consensus 40.7 4.9E+02 0.011 28.0 13.0 147 508-675 160-322 (412)
212 KOG0643|consensus 40.7 4.1E+02 0.0089 27.1 17.8 171 475-659 74-253 (327)
213 KOG0281|consensus 40.3 2.9E+02 0.0063 29.0 10.4 52 665-723 340-391 (499)
214 PF09826 Beta_propel: Beta pro 37.4 6.8E+02 0.015 28.7 20.1 235 503-749 58-341 (521)
215 KOG3881|consensus 37.2 5.6E+02 0.012 27.6 12.5 148 556-722 161-322 (412)
216 PF15525 DUF4652: Domain of un 36.3 4E+02 0.0086 25.6 10.8 84 58-144 85-175 (200)
217 COG4447 Uncharacterized protei 35.2 5.2E+02 0.011 26.6 11.4 199 479-703 109-321 (339)
218 PF02239 Cytochrom_D1: Cytochr 34.4 6.4E+02 0.014 27.4 18.9 248 475-749 16-284 (369)
219 KOG0308|consensus 34.1 5.3E+02 0.011 29.8 11.9 119 94-236 129-261 (735)
220 KOG0296|consensus 33.2 6.3E+02 0.014 27.0 17.3 144 508-676 75-223 (399)
221 KOG0265|consensus 33.1 5.8E+02 0.012 26.5 12.5 131 555-723 58-207 (338)
222 COG3823 Glutamine cyclotransfe 32.3 5E+02 0.011 25.5 10.2 162 550-732 50-219 (262)
223 KOG0643|consensus 31.7 5.8E+02 0.012 26.1 17.7 171 524-708 74-255 (327)
224 KOG0305|consensus 31.4 8E+02 0.017 27.7 16.8 175 525-722 198-378 (484)
225 KOG0278|consensus 30.8 5.7E+02 0.012 25.8 11.9 124 570-708 164-290 (334)
226 KOG0216|consensus 30.6 1E+02 0.0022 36.3 5.9 152 219-376 166-329 (1111)
227 KOG0308|consensus 29.3 4.2E+02 0.0091 30.5 10.2 94 602-707 129-235 (735)
228 KOG0318|consensus 28.9 8.8E+02 0.019 27.3 21.7 63 649-721 454-518 (603)
229 KOG0285|consensus 28.8 7.4E+02 0.016 26.4 16.8 207 475-722 173-391 (460)
230 COG4880 Secreted protein conta 28.7 8.1E+02 0.018 26.8 12.7 58 520-581 402-459 (603)
231 KOG0263|consensus 28.6 4.7E+02 0.01 30.7 10.7 104 600-720 543-649 (707)
232 PF13570 PQQ_3: PQQ-like domai 28.4 89 0.0019 21.1 3.4 26 88-119 15-40 (40)
233 PF14781 BBS2_N: Ciliary BBSom 28.3 4.5E+02 0.0098 23.8 9.4 63 650-727 64-134 (136)
234 PF06531 DUF1108: Protein of u 27.9 79 0.0017 25.5 3.2 28 369-396 59-86 (86)
235 COG0823 TolB Periplasmic compo 26.9 9.1E+02 0.02 26.8 12.8 146 571-727 218-366 (425)
236 KOG1778|consensus 26.1 84 0.0018 33.1 4.2 96 245-341 65-163 (319)
237 KOG0294|consensus 25.9 7.9E+02 0.017 25.8 16.6 46 485-535 29-74 (362)
238 KOG2714|consensus 25.9 35 0.00075 36.7 1.3 44 251-294 58-102 (465)
239 KOG1523|consensus 25.4 7.4E+02 0.016 26.0 10.4 138 523-672 31-180 (361)
240 PF08662 eIF2A: Eukaryotic tra 25.3 6.2E+02 0.014 24.4 10.3 72 508-590 71-142 (194)
241 KOG0279|consensus 25.2 7.6E+02 0.017 25.4 17.1 147 552-722 71-224 (315)
242 KOG0279|consensus 25.0 7.7E+02 0.017 25.4 19.4 185 508-723 74-265 (315)
243 cd00260 Sialidase Sialidases o 24.7 8.6E+02 0.019 25.8 20.6 117 624-741 180-318 (351)
244 PF01756 ACOX: Acyl-CoA oxidas 24.0 1E+02 0.0023 29.7 4.3 60 277-336 45-105 (187)
245 PF03000 NPH3: NPH3 family; I 24.0 6.2E+02 0.013 25.9 9.8 125 256-384 71-235 (258)
246 COG0823 TolB Periplasmic compo 24.0 1E+03 0.022 26.4 14.6 149 524-681 218-367 (425)
247 KOG0263|consensus 23.9 7E+02 0.015 29.3 11.0 90 524-626 557-649 (707)
248 KOG0272|consensus 23.8 9.7E+02 0.021 26.1 12.7 110 554-683 313-426 (459)
249 PF08662 eIF2A: Eukaryotic tra 23.7 6.7E+02 0.015 24.2 10.1 90 602-704 71-162 (194)
250 smart00875 BACK BTB And C-term 22.9 65 0.0014 26.9 2.3 27 278-304 2-28 (101)
251 KOG0973|consensus 22.4 1.5E+03 0.033 27.8 13.7 22 602-628 140-161 (942)
252 COG3386 Gluconolactonase [Carb 22.2 9.3E+02 0.02 25.3 19.1 191 524-735 47-257 (307)
253 KOG0299|consensus 21.4 8.8E+02 0.019 26.7 10.5 152 549-723 207-359 (479)
254 PRK02888 nitrous-oxide reducta 21.2 1.3E+03 0.028 27.1 12.4 52 665-721 296-352 (635)
255 KOG4682|consensus 20.7 85 0.0018 33.6 2.9 34 271-304 169-202 (488)
256 KOG0272|consensus 20.7 1.1E+03 0.024 25.7 12.5 131 508-659 314-451 (459)
No 1
>KOG4441|consensus
Probab=100.00 E-value=2.1e-85 Score=736.45 Aligned_cols=518 Identities=36% Similarity=0.653 Sum_probs=486.4
Q ss_pred cccCcceeeeeeecceEEEE-cccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHH
Q psy17309 217 MNFKRCYVSTAVHQDVIYAM-GGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDL 295 (824)
Q Consensus 217 ~~~~r~~~~~~~~~~~~~~~-~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~ 295 (824)
..++.|+..+++++.||++| .+.+.|+.+++|++.++++.+++.+++|+||+++.|+.+||++||.+|++|||+.+++.
T Consensus 46 ~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~ 125 (571)
T KOG4441|consen 46 REFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDA 125 (571)
T ss_pred eeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHH
Confidence 45678888999999999999 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCCHHHHHHHhcCCCcccCChHHHHHHH
Q psy17309 296 CCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELI 375 (824)
Q Consensus 296 c~~~l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~ll~~d~L~v~~E~~v~~av 375 (824)
|++||+++++++||++|..+|+.|++.+|.+.+..|+.+||.++. .+++|++|+.++|..+|++|.|++.+|+.||+++
T Consensus 126 C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~-~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~ 204 (571)
T KOG4441|consen 126 CCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVS-KTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAA 204 (571)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh-ccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 7889999999999999999999999999999999
Q ss_pred HHHHhcCccchHHHHHHhhhhccCCCCChHHHHhhccCCccccCCchhHHHHHHHHHHhhhhhhhhccCCCCCCCCccCC
Q psy17309 376 IRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLYDLELIAQIDGEVPTPEIARP 455 (824)
Q Consensus 376 ~~W~~~~~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (824)
++|++||.+.|++++.+|+++||++++++.++.+.+...+++..++.|+.++.++++++...... ..++. +..+|
T Consensus 205 ~~Wv~~d~~~R~~~~~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~----~~~~~-~~t~~ 279 (571)
T KOG4441|consen 205 MRWVKHDFEEREEHLPALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRR----PVMQS-PRTRP 279 (571)
T ss_pred HHHHhcCHhhHHHHHHHHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccC----ccccC-CCccc
Confidence 99999999999999999999999999999999999999999999999999999999876542211 11222 36667
Q ss_pred C-CCCCEEEEEccCCC-CCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecC-CCcccceEEEEECC
Q psy17309 456 R-VPHEILFAIGGWSG-GSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFD-GNEYYNSCRCFNAV 532 (824)
Q Consensus 456 r-~~~~~l~~~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~yd~~ 532 (824)
| ...+.++++||... ....+.+++|||.+++|.. .+++|.+|..+++++++++||++||++ +....+++++|||.
T Consensus 280 r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~--~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 280 RRSVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS--LAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CcCCCCeEEEECCCCCCCcccceeEEecCCcCcEee--cCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCC
Confidence 7 56789999999986 7788999999999999999 778889999999999999999999999 78889999999999
Q ss_pred CCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccC
Q psy17309 533 TKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFN 612 (824)
Q Consensus 533 ~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~ 612 (824)
+++|..+++|+.+|..+++++++|.||++||.++...++++++|||.+++|+.+++|+.+|++|++++++|+||++||.+
T Consensus 358 ~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~ 437 (571)
T KOG4441|consen 358 TNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGD 437 (571)
T ss_pred CCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC-cCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceE
Q psy17309 613 GHN-CLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFA 691 (824)
Q Consensus 613 ~~~-~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~ 691 (824)
+.. .++++++|||.+++|+.+++|+.+|.++++++++++||++||.++...+.+|++|||.+++|+.+++|+.+|..++
T Consensus 438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g 517 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVG 517 (571)
T ss_pred CCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccccc
Confidence 876 8999999999999999999999999999999999999999999887678889999999999999999999999999
Q ss_pred EEEECCEEEEEccCCCCceeeEEEEEECCCCcEEeccCCCCCccceeEEEE
Q psy17309 692 IEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVI 742 (824)
Q Consensus 692 ~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 742 (824)
+++++++||++||.++...+++++.|||.+++|+...++...|...+++++
T Consensus 518 ~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~~~~~~~~~~~~~~ 568 (571)
T KOG4441|consen 518 VVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTEPESGRGGAGVAVI 568 (571)
T ss_pred EEEECCEEEEEecccCccccceeEEcCCCCCceeeCCCccccccCcceEEe
Confidence 999999999999999999999999999999999999885556666555544
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=6.2e-78 Score=680.90 Aligned_cols=483 Identities=18% Similarity=0.279 Sum_probs=430.0
Q ss_pred ccCcceeeeeeecceEEEE-ccccccc-ccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHH
Q psy17309 218 NFKRCYVSTAVHQDVIYAM-GGYNGQR-RQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDL 295 (824)
Q Consensus 218 ~~~r~~~~~~~~~~~~~~~-~g~~~e~-~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~ 295 (824)
.++.|+..+++.+.||++| .+.+.|+ .+++|+|+++++++|+.+|+|+|||+ |+.+|+++||.+|++||++.|++.
T Consensus 37 ~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~ 114 (557)
T PHA02713 37 EIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLIDDLVTD 114 (557)
T ss_pred EEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHHHHHHH
Confidence 4678888999999999998 6667765 58999999999999999999999997 789999999999999999999999
Q ss_pred HHHHHhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCCHHHHHHHhcCCC-cccCChHHHHHH
Q psy17309 296 CCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDE-LNVKSEETVWEL 374 (824)
Q Consensus 296 c~~~l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~ll~~d~-L~v~~E~~v~~a 374 (824)
|++||+++|+++||++++.+|..+.+..|.++|.+|+.+||.+|+ ++++|++|+.++|.++|++|+ |+|.+|+.||+|
T Consensus 115 C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~-~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~ea 193 (557)
T PHA02713 115 CESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLI-TTDAFKKTVFEILFDIISTNDNVYLYREGYKVTI 193 (557)
T ss_pred HHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHh-CChhhhhCCHHHHHHHhccccccCCCcHHHHHHH
Confidence 999999999999999999999999999999999999999999999 789999999999999999987 799999999999
Q ss_pred HHHHHhcCccchHHHHHHhhhhccCCCCChHHHHhhccCCccccCCchhHHHHHHHHHHhhhhhhhhccCCCCCCCCccC
Q psy17309 375 IIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLYDLELIAQIDGEVPTPEIAR 454 (824)
Q Consensus 375 v~~W~~~~~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (824)
+++|++||+++|.+ +.+||++|||+++++.++. .+...+++...+.|.+++.++++.. ...
T Consensus 194 v~~W~~~d~~~r~~-~~~ll~~VR~~~l~~~~~~-~~~~~~~i~~~~~c~~~l~~a~~~~-----------------~~~ 254 (557)
T PHA02713 194 LLKWLEYNYITEEQ-LLCILSCIDIQNLDKKSRL-LLYSNKTINMYPSCIQFLLDNKQNR-----------------NII 254 (557)
T ss_pred HHHHHhcCHHHHHH-HhhhHhhhhHhhcchhhhh-hhcchHHHHhhHHHHHHHhhhhhhc-----------------ccC
Confidence 99999999887766 6699999999999998876 6777788889999999998876421 122
Q ss_pred CCCCCCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecC-CCcccceEEEEECCC
Q psy17309 455 PRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFD-GNEYYNSCRCFNAVT 533 (824)
Q Consensus 455 ~r~~~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~yd~~~ 533 (824)
||. ..+++.||.. ......+++||+.+++|.. .+++|.+|..+++++++++||++||.+ +....+++++|||.+
T Consensus 255 ~r~--~~l~~~~g~~-~~~~~~v~~yd~~~~~W~~--l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~ 329 (557)
T PHA02713 255 PRQ--LCLVCHDTKY-NVCNPCILVYNINTMEYSV--ISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIEN 329 (557)
T ss_pred Ccc--eEEEEecCcc-ccCCCCEEEEeCCCCeEEE--CCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCC
Confidence 443 4566666532 2233568999999999999 567888899999999999999999975 344578999999999
Q ss_pred CceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCC
Q psy17309 534 KVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNG 613 (824)
Q Consensus 534 ~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~ 613 (824)
++|..+++||.+|..+++++++|+||++||.++...++++++|||.+++|+.+++||.+|..+++++++|+|||+||.++
T Consensus 330 n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~ 409 (557)
T PHA02713 330 KIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTE 409 (557)
T ss_pred CeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCc
Confidence 99999999999999999999999999999988766788999999999999999999999999999999999999999864
Q ss_pred C------------------CcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCc-cceEEEEeCCC
Q psy17309 614 H------------------NCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSR-MCNGEKYNPVT 674 (824)
Q Consensus 614 ~------------------~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~v~~yd~~~ 674 (824)
. ..++++++|||++++|+.+++|+.+|..+++++++|+||++||.++... .+.+++|||.+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 410 HIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred ccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 2 1257899999999999999999999999999999999999999764333 35689999999
Q ss_pred -CCEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEEeccCC
Q psy17309 675 -KTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDM 730 (824)
Q Consensus 675 -~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 730 (824)
++|+.+++||.+|..+++++++|+||++||.++. .++++|||.+++|+.+++-
T Consensus 490 ~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 490 YNGWELITTTESRLSALHTILHDNTIMMLHCYESY---MLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred CCCeeEccccCcccccceeEEECCEEEEEeeecce---eehhhcCcccccccchhhh
Confidence 8999999999999999999999999999998763 4799999999999998653
No 3
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=3.8e-70 Score=625.91 Aligned_cols=495 Identities=25% Similarity=0.385 Sum_probs=427.9
Q ss_pred ccCcceeeeeeecceEEEE-cccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHH
Q psy17309 218 NFKRCYVSTAVHQDVIYAM-GGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLC 296 (824)
Q Consensus 218 ~~~r~~~~~~~~~~~~~~~-~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c 296 (824)
..+.|+..+++++.+|++| .+.+. +++|++++ ++++|+.+|+|+|||++.++.+|+++||.+|++||++.|++.|
T Consensus 22 ~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~l~~~C 97 (534)
T PHA03098 22 IIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDFLINLC 97 (534)
T ss_pred EEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHHHHHHH
Confidence 4566677777777777777 34443 68899999 9999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCCHHHHHHHhcCCCcccCChHHHHHHHH
Q psy17309 297 CDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELII 376 (824)
Q Consensus 297 ~~~l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~ll~~d~L~v~~E~~v~~av~ 376 (824)
++||.++++.+||+.++.+|+.|++.+|.++|.+||.+||.++. ++++|++|+.++|..+|++|.|++.+|+.||++++
T Consensus 98 ~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~-~~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~ 176 (534)
T PHA03098 98 INYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIY-NDPDFIYLSKNELIKILSDDKLNVSSEDVVLEIII 176 (534)
T ss_pred HHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHh-cCchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 68899999999999999999999999999999999
Q ss_pred HHHhcCccchHHHHHHhhhhccCCCCChHHHHhhcc------CCccccCCchhHHHHHHHHHHhhhhhhhhccCCCCCCC
Q psy17309 377 RWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVK------HHPYVQSTPECRPIIIETFKFLYDLELIAQIDGEVPTP 450 (824)
Q Consensus 377 ~W~~~~~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 450 (824)
+|++++.++|.+++.+||++|||++++++++.+.+. +.+++ .++.|...+.++..+...
T Consensus 177 ~W~~~~~~~r~~~~~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------------- 241 (534)
T PHA03098 177 KWLTSKKNNKYKDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIV-FNKRCIKIIYSKKYNLNK-------------- 241 (534)
T ss_pred HHHhcChhhhHhHHHHHHhhccccccCHHHHHHHHHHHhhcCCccee-ccccchHHHHHHHhcccC--------------
Confidence 999999999999999999999999999999987664 55555 777898888776654210
Q ss_pred CccCCCCCCCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCC-cccceEEEE
Q psy17309 451 EIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGN-EYYNSCRCF 529 (824)
Q Consensus 451 ~~~~~r~~~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~y 529 (824)
...+.+.....+++.||.. .....+..|++..++|..++ +.+ .+..++++++++.||++||.... ...+++++|
T Consensus 242 ~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~y 316 (534)
T PHA03098 242 ILPRSSTFGSIIYIHITMS--IFTYNYITNYSPLSEINTII--DIH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSY 316 (534)
T ss_pred CCcCccCCCcceEeecccc--hhhceeeecchhhhhccccc--Ccc-ccccceEEEECCEEEEECCCcCCCCeeccEEEE
Confidence 0111111223455555543 23345667899899998853 333 24457888999999999998653 356789999
Q ss_pred ECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEc
Q psy17309 530 NAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITG 609 (824)
Q Consensus 530 d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~G 609 (824)
|+.+++|..+++||.+|..|++++++++||++||..+....+++++||+.+++|+.+++||.+|.+|++++++++|||+|
T Consensus 317 d~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~G 396 (534)
T PHA03098 317 DTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIG 396 (534)
T ss_pred eCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEEC
Confidence 99999999999999999999999999999999998866678899999999999999999999999999999999999999
Q ss_pred ccCC-CCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCC---ccceEEEEeCCCCCEEECCCCCC
Q psy17309 610 GFNG-HNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMS---RMCNGEKYNPVTKTWSQVPDMYN 685 (824)
Q Consensus 610 G~~~-~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~p~ 685 (824)
|... ...++++++||+.+++|+.++++|.+|.+++++.++++||++||.+... ..+.+++||+.+++|+.++++|.
T Consensus 397 G~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 476 (534)
T PHA03098 397 GISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNF 476 (534)
T ss_pred CcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCc
Confidence 9743 3457899999999999999999999999999999999999999975433 25679999999999999999999
Q ss_pred CCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEEeccCCCCCccce
Q psy17309 686 PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSAL 737 (824)
Q Consensus 686 ~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~ 737 (824)
+|..+++++++++||++||.+.....+++++||+++++|+.++.+|......
T Consensus 477 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~ 528 (534)
T PHA03098 477 PRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKVIGSL 528 (534)
T ss_pred ccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcccccce
Confidence 9999999999999999999987666789999999999999998877655443
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=1.9e-68 Score=596.21 Aligned_cols=442 Identities=22% Similarity=0.359 Sum_probs=374.8
Q ss_pred cccCcceeeeeeecceEEEE-cccccccccceeEE--eeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHH
Q psy17309 217 MNFKRCYVSTAVHQDVIYAM-GGYNGQRRQNSVEK--YNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQ 293 (824)
Q Consensus 217 ~~~~r~~~~~~~~~~~~~~~-~g~~~e~~~~~i~l--~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~ 293 (824)
..++.|+..++++++||++| .+.|.|+++ +|.+ .++++++++.||+|+|||++.|+.+||++||.||++||++.++
T Consensus 31 ~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~v~ 109 (480)
T PHA02790 31 GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEFII 109 (480)
T ss_pred cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHHHH
Confidence 35678888999999999999 667888855 5665 3899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcC-chhhhcCCHHHHHHHhcCCCcccCChHHHH
Q psy17309 294 DLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARE-SEEIVFISEQELEEIISSDELNVKSEETVW 372 (824)
Q Consensus 294 ~~c~~~l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~-~~~f~~L~~~~l~~ll~~d~L~v~~E~~v~ 372 (824)
+.|++||+++|+++||++|+.+|+.|++++|.++|.+||.+||.+|+++ .++|++|+. .++|++|.|++.+|++||
T Consensus 110 ~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~ 186 (480)
T PHA02790 110 YTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSM---KLILESDELNVPDEDYVV 186 (480)
T ss_pred HHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCH---HHhcccccCCCccHHHHH
Confidence 9999999999999999999999999999999999999999999999943 389999996 679999999999999999
Q ss_pred HHHHHHHhcCccchHHHHHHhhhh-ccCCCCChHHHHhhccCCccccCCchhHHHHHHHHHHhhhhhhhhccCCCCCCCC
Q psy17309 373 ELIIRWIDYDPENRKKHIVSLMKN-IRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLYDLELIAQIDGEVPTPE 451 (824)
Q Consensus 373 ~av~~W~~~~~~~r~~~~~~ll~~-vr~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 451 (824)
+++++|++++. .|...+.+++++ ||++++++..+.. +..++.++..++..
T Consensus 187 eav~~Wl~~~~-~~~~~l~~~vr~~ir~~~l~~~~l~~-------------~~~~~~~~~~~~~~--------------- 237 (480)
T PHA02790 187 DFVIKWYMKRR-NRLGNLLLLIKNVIRSNYLSPRGINN-------------VKWILDCTKIFHCD--------------- 237 (480)
T ss_pred HHHHHHHHhhH-HHHHHHHHHHHhcCChhhCCHHHHHH-------------HHHHHHHHHHhhcc---------------
Confidence 99999999863 355666666666 8888888776632 23344444433211
Q ss_pred ccCCCCCCCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEEC
Q psy17309 452 IARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNA 531 (824)
Q Consensus 452 ~~~~r~~~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~ 531 (824)
..||.... +... .+.+..++|..+. .....+.+++.||++||.++....+.+++|||
T Consensus 238 -~~~r~~~~--~~~~------------~~~~~~~~~~~~~--------~~~~~~~~~~~lyviGG~~~~~~~~~v~~Ydp 294 (480)
T PHA02790 238 -KQPRKSYK--YPFI------------EYPMNMDQIIDIF--------HMCTSTHVGEVVYLIGGWMNNEIHNNAIAVNY 294 (480)
T ss_pred -cccccccc--cccc------------ccCCcccceeecc--------CCcceEEECCEEEEEcCCCCCCcCCeEEEEEC
Confidence 12222111 0000 1234556676521 11223457999999999876667788999999
Q ss_pred CCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEccc
Q psy17309 532 VTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGF 611 (824)
Q Consensus 532 ~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~ 611 (824)
.+++|..+++|+.+|..+++++++|+||++||.++ .+++++|||.+++|+.+++||.+|.+|++++++|+|||+||.
T Consensus 295 ~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~ 371 (480)
T PHA02790 295 ISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGH 371 (480)
T ss_pred CCCEEEECCCCCchhhcceEEEECCEEEEECCcCC---CCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCc
Confidence 99999999999999999999999999999999753 267999999999999999999999999999999999999998
Q ss_pred CCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceE
Q psy17309 612 NGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFA 691 (824)
Q Consensus 612 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~ 691 (824)
++. .+++++|||.+++|+.+++||.+|..+++++++|+||++||. +++|||++++|+.+++||.+|..++
T Consensus 372 ~~~--~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~--------~e~ydp~~~~W~~~~~m~~~r~~~~ 441 (480)
T PHA02790 372 SET--DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN--------AEFYCESSNTWTLIDDPIYPRDNPE 441 (480)
T ss_pred CCC--CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc--------eEEecCCCCcEeEcCCCCCCccccE
Confidence 643 368999999999999999999999999999999999999983 6899999999999999999999999
Q ss_pred EEEECCEEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 692 IEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 692 ~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
+++++|+||++||.++....+.+++|||++++|+..
T Consensus 442 ~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 442 LIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred EEEECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 999999999999987665668899999999999875
No 5
>KOG4441|consensus
Probab=100.00 E-value=7.2e-51 Score=457.31 Aligned_cols=491 Identities=24% Similarity=0.427 Sum_probs=364.0
Q ss_pred eeeeeecceEEEEcccccccccceeEEeeecccchhhhheeeccccee---cCHhhHHHHHHHHhhcChHhHHHHHHHHH
Q psy17309 224 VSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLH---ITEDNVASLLLATDFFCMSKAQDLCCDFI 300 (824)
Q Consensus 224 ~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~---l~~~~v~~ll~~a~~~~i~~l~~~c~~~l 300 (824)
..+.+|+.++.+.+.||............ ..++. ++++.+ +.-.+|+
T Consensus 46 ~~~~aHR~VLAa~S~YFraMFt~~l~e~~--------------~~~i~l~~v~~~~l----------------~~ll~y~ 95 (571)
T KOG4441|consen 46 REFPAHRVVLAACSPYFRAMFTSGLKESK--------------QKEINLEGVDPETL----------------ELLLDYA 95 (571)
T ss_pred eeechHHHHHHhccHHHHHHhcCCccccc--------------ceEEEEecCCHHHH----------------HHHHHHh
Confidence 56779999999999999875544222111 11111 333333 3334555
Q ss_pred hh---cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----------------HHHcCchhhhcCCHHHHHHHhcC
Q psy17309 301 KR---LTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFV-----------------DVARESEEIVFISEQELEEIISS 360 (824)
Q Consensus 301 ~~---~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~-----------------~v~~~~~~f~~L~~~~l~~ll~~ 360 (824)
.. .|+.+|+.+++..|..+++..+++.|.+|+.+++. ++....+.|..-++.++.. ..
T Consensus 96 Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~--~e 173 (571)
T KOG4441|consen 96 YTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSK--TE 173 (571)
T ss_pred hcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc--cH
Confidence 44 67889999999999999999999999999998641 1221122333333322222 44
Q ss_pred CCcccCChHHHHHHHHHHHhcCccchHHHHHHhhhhccCCCCChHHHHhhccCC---ccccCCchhHHHHHHHHHHhhhh
Q psy17309 361 DELNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHH---PYVQSTPECRPIIIETFKFLYDL 437 (824)
Q Consensus 361 d~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~ 437 (824)
++|.++.|+ +. .++.=-..+.+++++.+..+++|++.+.-.+......+.+. |++... ++.+.......+
T Consensus 174 efl~L~~~~-l~-~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~vr~~ll~~~-----~l~~~v~~~~~~ 246 (571)
T KOG4441|consen 174 EFLLLSLEE-LI-GLLSSDDLNVDSEEEVFEAAMRWVKHDFEEREEHLPALLEAVRLPLLPPQ-----FLVEIVESEPLI 246 (571)
T ss_pred HhhCCCHHH-HH-hhccccCCCcCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHhcCccCCCHH-----HHHHHHhhhhhh
Confidence 455544333 22 22332345566777889999999999876654333322221 333221 111111110000
Q ss_pred hhhhccCCCCCCCCccCCCCCCCEEEEEccCCCCCCCceEEEEECCCCcEEEccc--CCCCCCCceeEEEEECCEEEEEe
Q psy17309 438 ELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQ--VDPMGPRAYHGTAVIGYNIYVIG 515 (824)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~r~~~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~~~~~~r~~~~~~~~~~~lyv~G 515 (824)
. . .+.+. .. ..+. .+|..++. +.++.+|..... ...+.||++|
T Consensus 247 ~----------~----~~~c~----------------~~--l~ea--~~~~~~~~~~~~~~~~~t~~r~-~~~~~l~~vG 291 (571)
T KOG4441|consen 247 K----------R----DSACR----------------DL--LDEA--KKYHLLPQRRPVMQSPRTRPRR-SVSGKLVAVG 291 (571)
T ss_pred c----------c----CHHHH----------------HH--HHHH--HHHhhCcccCccccCCCcccCc-CCCCeEEEEC
Confidence 0 0 00000 00 0000 01111111 002222222222 4468899999
Q ss_pred ecCC-CcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEeccc-CCCCCCeEEEEeCCCCcEEeecCCCccc
Q psy17309 516 GFDG-NEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN-GQRRQNSVEKYNYTENQWSLIAPMNVER 593 (824)
Q Consensus 516 G~~~-~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~t~~W~~~~~~p~~r 593 (824)
|..+ ....+.+.+|||.+++|..+++||.+|..+++++++|.||++||.+ +...++++|+|||.+++|+.+++|+.+|
T Consensus 292 G~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R 371 (571)
T KOG4441|consen 292 GYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR 371 (571)
T ss_pred CCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc
Confidence 9986 6778999999999999999999999999999999999999999999 7888999999999999999999999999
Q ss_pred CceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCC-ccceEEEEeC
Q psy17309 594 SDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMS-RMCNGEKYNP 672 (824)
Q Consensus 594 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~ 672 (824)
..+++++++|.||++||.++...++++|+|||.+++|+.+++|+.+|.+|++++++++||++||.++.. .++++++|||
T Consensus 372 ~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP 451 (571)
T KOG4441|consen 372 SDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDP 451 (571)
T ss_pred ccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcC
Confidence 999999999999999999999999999999999999999999999999999999999999999988777 7999999999
Q ss_pred CCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEEeccCCCCCccceeEEEEcCccceeccc
Q psy17309 673 VTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGLPNVYDYI 752 (824)
Q Consensus 673 ~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~ 752 (824)
.+++|+.+++|+.+|.++++++++++||++||.++.....+++.|||.+++|+.+++|+.+|..++++++++++|+.++.
T Consensus 452 ~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~ 531 (571)
T KOG4441|consen 452 ETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGF 531 (571)
T ss_pred CCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecc
Confidence 99999999999999999999999999999999998667788999999999999999999999999999999999998763
Q ss_pred cccccchhhHhhhhhhcccccccccccccCCCCCccccCcCCCCCcCcccccc
Q psy17309 753 HQHRDSLMEEKRQKLLAIEGRQRQNQSEEGNSSQQSVLPSSNSNVSSSDGVMN 805 (824)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~p~~~~~~~~~~~~~~ 805 (824)
.+. ..+-+++. ||+.+++|...+. +...|..++++.
T Consensus 532 ~~~---------~~l~~ve~-------ydp~~d~W~~~~~-~~~~~~~~~~~~ 567 (571)
T KOG4441|consen 532 DGN---------NNLNTVEC-------YDPETDTWTEVTE-PESGRGGAGVAV 567 (571)
T ss_pred cCc---------cccceeEE-------cCCCCCceeeCCC-ccccccCcceEE
Confidence 322 23344554 9999999999999 999999888764
No 6
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=409.02 Aligned_cols=459 Identities=15% Similarity=0.184 Sum_probs=325.3
Q ss_pred eeeeeeecceEEEEcccccccccceeEEeeecccchhhhheeeccccee---cCHhhHHHHHHHHhhcChHhHHHHHHHH
Q psy17309 223 YVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLH---ITEDNVASLLLATDFFCMSKAQDLCCDF 299 (824)
Q Consensus 223 ~~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~---l~~~~v~~ll~~a~~~~i~~l~~~c~~~ 299 (824)
+..+.+|+.+|.+.++||............ ...++. ++.+.+.. ..+|
T Consensus 35 ~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~-------------~~~~v~l~~v~~~~~~~----------------ll~y 85 (557)
T PHA02713 35 GEEIKAHKTILAAGSKYFRTLFTTPMIIRD-------------LVTRVNLQMFDKDAVKN----------------IVQY 85 (557)
T ss_pred CCEEeehHHHHhhcCHHHHHHhcCCchhhc-------------cCceEEeccCCHHHHHH----------------HHHH
Confidence 457999999999999999765443221110 001222 23333333 3344
Q ss_pred Hhh-cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----HH------------cCchhhhcCCHHHHHHHhcCC
Q psy17309 300 IKR-LTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVD-----VA------------RESEEIVFISEQELEEIISSD 361 (824)
Q Consensus 300 l~~-~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~-----v~------------~~~~~f~~L~~~~l~~ll~~d 361 (824)
+-. .++.+|+..++..|+.++++.|.+.|.+|+..++.. +. +....|.. +.+.++.+++
T Consensus 86 ~Yt~~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~---~~f~~v~~~~ 162 (557)
T PHA02713 86 LYNRHISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLM---SNIPTLITTD 162 (557)
T ss_pred hcCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHH---HHHHHHhCCh
Confidence 433 488999999999999999999999999999987631 11 00111211 1222222222
Q ss_pred -CcccCChHHHHHHHHHHHhc----CccchHHHHHHhhhhccCCCCChHHHHhhccC--CccccCCch----hHHHHHHH
Q psy17309 362 -ELNVKSEETVWELIIRWIDY----DPENRKKHIVSLMKNIRLGLLETEFFREKVKH--HPYVQSTPE----CRPIIIET 430 (824)
Q Consensus 362 -~L~v~~E~~v~~av~~W~~~----~~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~~--~~~~~~~~~----~~~~i~~~ 430 (824)
++.+. ++.+..-+.. +..++++.++.+++|++.+...++.+.+.++. .+++..... ..+++...
T Consensus 163 ef~~L~-----~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~r~~~~~ll~~VR~~~l~~~~~~~~~~~~~i~~~ 237 (557)
T PHA02713 163 AFKKTV-----FEILFDIISTNDNVYLYREGYKVTILLKWLEYNYITEEQLLCILSCIDIQNLDKKSRLLLYSNKTINMY 237 (557)
T ss_pred hhhhCC-----HHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHHHHHHhhhHhhhhHhhcchhhhhhhcchHHHHhh
Confidence 22222 2344444543 34567888999999999886555443322111 111111000 00000000
Q ss_pred HHHhhhhhhhhccCCCCCCCCccCCCCCCCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCE
Q psy17309 431 FKFLYDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYN 510 (824)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~ 510 (824)
.+.... . .+.. ......+|. ..
T Consensus 238 ~~c~~~--------------------l----------------------~~a~--------~~~~~~~r~--------~~ 259 (557)
T PHA02713 238 PSCIQF--------------------L----------------------LDNK--------QNRNIIPRQ--------LC 259 (557)
T ss_pred HHHHHH--------------------H----------------------hhhh--------hhcccCCcc--------eE
Confidence 000000 0 0000 000111332 23
Q ss_pred EEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEeccc-CCCCCCeEEEEeCCCCcEEeecCC
Q psy17309 511 IYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN-GQRRQNSVEKYNYTENQWSLIAPM 589 (824)
Q Consensus 511 lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~t~~W~~~~~~ 589 (824)
+++.||... .....+++||+.+++|..+++||.+|..+++++++++||++||.+ +...++++++|||.+++|+.+++|
T Consensus 260 l~~~~g~~~-~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m 338 (557)
T PHA02713 260 LVCHDTKYN-VCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM 338 (557)
T ss_pred EEEecCccc-cCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC
Confidence 455555211 123568999999999999999999999999999999999999975 344578999999999999999999
Q ss_pred CcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCC-------
Q psy17309 590 NVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMS------- 662 (824)
Q Consensus 590 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~------- 662 (824)
|.+|..+++++++|+||++||.++....+++++|||.+++|+.+++||.+|..+++++++|+||++||.++..
T Consensus 339 ~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~ 418 (557)
T PHA02713 339 IKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHH 418 (557)
T ss_pred cchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccc
Confidence 9999999999999999999999876678899999999999999999999999999999999999999975321
Q ss_pred -----------ccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCCc-eeeEEEEEECCC-CcEEeccC
Q psy17309 663 -----------RMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVT-TIYHVECYDEKT-DEWYEATD 729 (824)
Q Consensus 663 -----------~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~v~~yd~~~-~~W~~~~~ 729 (824)
.++++++|||.+++|+.+++|+.+|..+++++++++||++||.++.. ..+.+++|||++ ++|+.+++
T Consensus 419 ~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~ 498 (557)
T PHA02713 419 MNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT 498 (557)
T ss_pred cccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc
Confidence 25789999999999999999999999999999999999999986543 235689999999 89999999
Q ss_pred CCCCccceeEEEEcCccceeccccccccchhhHhhhhhhcccccccccccccCCCCCccccCcCCCC
Q psy17309 730 MNIYRSALSACVIMGLPNVYDYIHQHRDSLMEEKRQKLLAIEGRQRQNQSEEGNSSQQSVLPSSNSN 796 (824)
Q Consensus 730 ~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~p~~~~~ 796 (824)
||.+|..+++++++++||+.++..+. .+++ .||+.+++|+.+.+..++
T Consensus 499 m~~~r~~~~~~~~~~~iyv~Gg~~~~------------~~~e-------~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 499 TESRLSALHTILHDNTIMMLHCYESY------------MLQD-------TFNVYTYEWNHICHQHSN 546 (557)
T ss_pred cCcccccceeEEECCEEEEEeeecce------------eehh-------hcCcccccccchhhhcCC
Confidence 99999999999999999998664431 1244 499999999988876554
No 7
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.7e-39 Score=350.07 Aligned_cols=178 Identities=20% Similarity=0.255 Sum_probs=143.7
Q ss_pred CCCCceeEEEEECCEEEEEeecCCC------cccceEEEEECCCCceEEeccCC---CCcceEEEEEECCEEEEEecccC
Q psy17309 496 MGPRAYHGTAVIGYNIYVIGGFDGN------EYYNSCRCFNAVTKVWKEIAPMN---FKRCYVSTAVHQDVIYAMGGYNG 566 (824)
Q Consensus 496 ~~~r~~~~~~~~~~~lyv~GG~~~~------~~~~~~~~yd~~~~~W~~~~~~~---~~r~~~~~~~~~~~iyv~GG~~~ 566 (824)
|.+|..|++++.+++|||+||.+.. ..++++++||+.+++|..++++. .+|..|++++++++||++||...
T Consensus 125 p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~ 204 (341)
T PLN02153 125 PEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFAT 204 (341)
T ss_pred CCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEecccc
Confidence 3467788888889999999997532 13578999999999999998764 78999999999999999999642
Q ss_pred C--------CCCCeEEEEeCCCCcEEeecC---CCcccCceEEEEECCEEEEEcccCC---------CCcCCceEEEeCC
Q psy17309 567 Q--------RRQNSVEKYNYTENQWSLIAP---MNVERSDASATTLQGKIYITGGFNG---------HNCLNSCEVYDPE 626 (824)
Q Consensus 567 ~--------~~~~~~~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~lyv~GG~~~---------~~~~~~v~~yd~~ 626 (824)
. ...+++++||+.+++|+.++. +|.+|..|++++++++|||+||... ....+++++||++
T Consensus 205 ~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~ 284 (341)
T PLN02153 205 SILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE 284 (341)
T ss_pred ccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcC
Confidence 1 125789999999999999864 7899999999999999999999731 2346799999999
Q ss_pred CCeEEEcC-----CCCCCCcceEEEEE--CCEEEEEecCCCC-CccceEEEEeCC
Q psy17309 627 CNQWTLIE-----PMRHRRSGVSCIAY--HECIYVIGGFNGM-SRMCNGEKYNPV 673 (824)
Q Consensus 627 ~~~W~~~~-----~~p~~r~~~~~~~~--~~~iyv~GG~~~~-~~~~~v~~yd~~ 673 (824)
+++|+.+. ++|.++..++++.+ +++||++||.+.. ..+.++++|+..
T Consensus 285 ~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 285 TLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred ccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCCccccceEEEecc
Confidence 99999885 56666655455443 4589999998654 568999999864
No 8
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=6.7e-39 Score=357.40 Aligned_cols=222 Identities=24% Similarity=0.393 Sum_probs=190.5
Q ss_pred CceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEeccC---CCCcceEEEEEECCEEEEEecccCCCCCCeEEE
Q psy17309 499 RAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPM---NFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEK 575 (824)
Q Consensus 499 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 575 (824)
|..|++++++++|||+||.+....++++++||+.+++|+.++++ |.+|..|++++.+++||++||.+....++++++
T Consensus 219 ~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~ 298 (470)
T PLN02193 219 CLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDS 298 (470)
T ss_pred ccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEE
Confidence 55678888999999999988767789999999999999999888 789999999999999999999987777889999
Q ss_pred EeCCCCcEEeecC---CCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCC---CCCCcceEEEEEC
Q psy17309 576 YNYTENQWSLIAP---MNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPM---RHRRSGVSCIAYH 649 (824)
Q Consensus 576 yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~ 649 (824)
||+.+++|+.+++ +|.+|.+|++++++++||++||.++. ..+++++||+.+++|+.++++ |.+|..|++++++
T Consensus 299 yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~ 377 (470)
T PLN02193 299 YNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVG 377 (470)
T ss_pred EECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEEC
Confidence 9999999998864 67899999999999999999998754 368999999999999999754 8899999999999
Q ss_pred CEEEEEecCCC---------CCccceEEEEeCCCCCEEECCC------CCCCCcceEEE--EE--CCEEEEEccCCC-Cc
Q psy17309 650 ECIYVIGGFNG---------MSRMCNGEKYNPVTKTWSQVPD------MYNPRSNFAIE--VI--DDMIFAIGGFNG-VT 709 (824)
Q Consensus 650 ~~iyv~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~------~p~~r~~~~~~--~~--~~~i~v~GG~~~-~~ 709 (824)
++|||+||... ....+++++||+.+++|+.++. .|.+|..++++ .+ ++.|+++||.+. +.
T Consensus 378 ~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~ 457 (470)
T PLN02193 378 KHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTND 457 (470)
T ss_pred CEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccc
Confidence 99999999643 1235789999999999999864 35677766532 33 345999999975 45
Q ss_pred eeeEEEEEECCC
Q psy17309 710 TIYHVECYDEKT 721 (824)
Q Consensus 710 ~~~~v~~yd~~~ 721 (824)
.++++|+|++++
T Consensus 458 ~~~D~~~~~~~~ 469 (470)
T PLN02193 458 RFDDLFFYGIDS 469 (470)
T ss_pred cccceEEEecCC
Confidence 789999998875
No 9
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.4e-38 Score=342.77 Aligned_cols=274 Identities=22% Similarity=0.340 Sum_probs=227.0
Q ss_pred CCCCcEEEcccC--CCCCCCceeEEEEECCEEEEEeecCC--CcccceEEEEECCCCceEEeccCC-CCc---ceEEEEE
Q psy17309 482 TRADRWVKIDQV--DPMGPRAYHGTAVIGYNIYVIGGFDG--NEYYNSCRCFNAVTKVWKEIAPMN-FKR---CYVSTAV 553 (824)
Q Consensus 482 ~~~~~W~~~~~~--~~~~~r~~~~~~~~~~~lyv~GG~~~--~~~~~~~~~yd~~~~~W~~~~~~~-~~r---~~~~~~~ 553 (824)
+...+|..+... .+|.+|..|++++++++|||+||... ....+++++||+.+++|..+++++ .+| .+|++++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~ 83 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA 83 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence 356779987543 36889999999999999999999853 234579999999999999988764 344 3788999
Q ss_pred ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCC-----CcccCceEEEEECCEEEEEcccCCC------CcCCceEE
Q psy17309 554 HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPM-----NVERSDASATTLQGKIYITGGFNGH------NCLNSCEV 622 (824)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~-----p~~r~~~~~~~~~~~lyv~GG~~~~------~~~~~v~~ 622 (824)
++++||++||......++++++||+.+++|+.+++| |.+|..|++++++++|||+||.+.. ..++++++
T Consensus 84 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 84 VGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred ECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEE
Confidence 999999999987766788999999999999999887 8899999999999999999998632 13578999
Q ss_pred EeCCCCeEEEcCCCC---CCCcceEEEEECCEEEEEecCCCC--------CccceEEEEeCCCCCEEECCC---CCCCCc
Q psy17309 623 YDPECNQWTLIEPMR---HRRSGVSCIAYHECIYVIGGFNGM--------SRMCNGEKYNPVTKTWSQVPD---MYNPRS 688 (824)
Q Consensus 623 yd~~~~~W~~~~~~p---~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~v~~yd~~~~~W~~~~~---~p~~r~ 688 (824)
||+++++|+.+++++ .+|.+|++++++++|||+||.+.. ...+++++||+.+++|++++. +|.+|.
T Consensus 164 yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~ 243 (341)
T PLN02153 164 YNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS 243 (341)
T ss_pred EECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc
Confidence 999999999998653 789999999999999999996421 125789999999999999864 688999
Q ss_pred ceEEEEECCEEEEEccCCC---------CceeeEEEEEECCCCcEEecc-----CCCCCccceeEEEEcC--ccceeccc
Q psy17309 689 NFAIEVIDDMIFAIGGFNG---------VTTIYHVECYDEKTDEWYEAT-----DMNIYRSALSACVIMG--LPNVYDYI 752 (824)
Q Consensus 689 ~~~~~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~-----~~p~~r~~~~~~~~~~--~~~~~~~~ 752 (824)
.+++++++++|||+||... ....+++++||+++++|+.+. ++|..|..++++.+.+ ++|++++.
T Consensus 244 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~ 323 (341)
T PLN02153 244 VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGK 323 (341)
T ss_pred eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCc
Confidence 9999999999999999732 224578999999999999884 5666676655555543 68988777
Q ss_pred ccc
Q psy17309 753 HQH 755 (824)
Q Consensus 753 ~~~ 755 (824)
...
T Consensus 324 ~~~ 326 (341)
T PLN02153 324 LPT 326 (341)
T ss_pred CCC
Confidence 655
No 10
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=3e-38 Score=362.19 Aligned_cols=473 Identities=17% Similarity=0.204 Sum_probs=320.9
Q ss_pred ceeeeeeecceEEEEcccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHHHHHHh
Q psy17309 222 CYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301 (824)
Q Consensus 222 ~~~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c~~~l~ 301 (824)
.+..+.+|+.+|.+.+.||......... ..++.|.. +.. ..+.-.+||.
T Consensus 19 ~~~~~~~Hk~vLaa~S~yF~~mf~~~~~-----------------~~~i~l~~-~~~-------------~~~~~l~y~Y 67 (534)
T PHA03098 19 GGGIIKVHKIILSSSSEYFKKMFKNNFK-----------------ENEINLNI-DYD-------------SFNEVIKYIY 67 (534)
T ss_pred CCEEEEeHHHHHHhhhHHHHHHHhCCCC-----------------CceEEecC-CHH-------------HHHHHHHHhc
Confidence 4667899999999999998764333221 23444443 221 2334445653
Q ss_pred h---cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----------------HHcCchhhhcCCHHHHHHHhcC-
Q psy17309 302 R---LTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVD-----------------VARESEEIVFISEQELEEIISS- 360 (824)
Q Consensus 302 ~---~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~-----------------v~~~~~~f~~L~~~~l~~ll~~- 360 (824)
. .++.+|+..++.+|+.++++.|++.|.+|+..++.. +.+.+.+|+. +.+.++.++
T Consensus 68 tg~~~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~---~nf~~v~~~~ 144 (534)
T PHA03098 68 TGKINITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIR---NNIELIYNDP 144 (534)
T ss_pred CCceEEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHH---HHHHHHhcCc
Confidence 3 578999999999999999999999999999987521 1111112221 222233333
Q ss_pred CCcccCChHHHHHHHHHHHhcCccchHHHHHHhhhhccCCCCChHHHHhhccCC---ccccCCchhHHHHHHHHHHhhhh
Q psy17309 361 DELNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHH---PYVQSTPECRPIIIETFKFLYDL 437 (824)
Q Consensus 361 d~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~ 437 (824)
+++.++.| . +..+++=-..+...+.+.+..+++|++.+...+......+.+. +++. .+.+.+...+....
T Consensus 145 ~f~~l~~~-~-l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vR~~~~~-----~~~l~~~~~~~~~~ 217 (534)
T PHA03098 145 DFIYLSKN-E-LIKILSDDKLNVSSEDVVLEIIIKWLTSKKNNKYKDICLILKVLRITFLS-----EEGIKKLKRWKLRI 217 (534)
T ss_pred hhhcCCHH-H-HHHHhcCCCcCcCCHHHHHHHHHHHHhcChhhhHhHHHHHHhhccccccC-----HHHHHHHHHHHhhc
Confidence 44445422 2 2233322233345677788888888888765554333332222 1111 11111111100000
Q ss_pred hhhhccCCCCCCCCccCCCCCCCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeec
Q psy17309 438 ELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGF 517 (824)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~r~~~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~ 517 (824)
. ...+.. .+++.. .......+.+ ... +|.. ..+..+++.||.
T Consensus 218 ~-----~~~~~~----~~~~~~-------------~~~~~~~~~~----------~~~--~~~~----~~~~~~~~~~g~ 259 (534)
T PHA03098 218 K-----KKKIVF----NKRCIK-------------IIYSKKYNLN----------KIL--PRSS----TFGSIIYIHITM 259 (534)
T ss_pred C-----Ccceec----cccchH-------------HHHHHHhccc----------CCC--cCcc----CCCcceEeeccc
Confidence 0 000000 000000 0000000000 000 1110 012345555554
Q ss_pred CCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCC-CCCeEEEEeCCCCcEEeecCCCcccCce
Q psy17309 518 DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQR-RQNSVEKYNYTENQWSLIAPMNVERSDA 596 (824)
Q Consensus 518 ~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~p~~r~~~ 596 (824)
. .....+..|++.+++|..+++++. +..++++++++.||++||..... ..+++++||+.+++|+.+++||.+|..|
T Consensus 260 ~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~ 336 (534)
T PHA03098 260 S--IFTYNYITNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP 336 (534)
T ss_pred c--hhhceeeecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc
Confidence 3 233456788999999999887764 44578899999999999987533 4578999999999999999999999999
Q ss_pred EEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCC-CCccceEEEEeCCCC
Q psy17309 597 SATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNG-MSRMCNGEKYNPVTK 675 (824)
Q Consensus 597 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~~~ 675 (824)
++++++++||++||.++....+++++||+.+++|+.++++|.+|..++++.++++||++||... ...++++++||+.++
T Consensus 337 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 337 GVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred eEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 9999999999999998666788999999999999999999999999999999999999999643 334689999999999
Q ss_pred CEEECCCCCCCCcceEEEEECCEEEEEccCCCCc---eeeEEEEEECCCCcEEeccCCCCCccceeEEEEcCccceeccc
Q psy17309 676 TWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVT---TIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGLPNVYDYI 752 (824)
Q Consensus 676 ~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~ 752 (824)
+|+.++++|.+|..+++++++++||++||.+... ..+.+++||+.+++|+.++++|.+|..++++++++++|++++.
T Consensus 417 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 496 (534)
T PHA03098 417 KWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGD 496 (534)
T ss_pred eeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCC
Confidence 9999999999999999999999999999986433 2567999999999999999999999999999999999998765
Q ss_pred cccccchhhHhhhhhhcccccccccccccCCCCCccccCc
Q psy17309 753 HQHRDSLMEEKRQKLLAIEGRQRQNQSEEGNSSQQSVLPS 792 (824)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~p~ 792 (824)
..... .-.++ .||+..++|..++.
T Consensus 497 ~~~~~---------~~~v~-------~yd~~~~~W~~~~~ 520 (534)
T PHA03098 497 KYEYY---------INEIE-------VYDDKTNTWTLFCK 520 (534)
T ss_pred cCCcc---------cceeE-------EEeCCCCEEEecCC
Confidence 43211 11233 49999999998875
No 11
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.2e-37 Score=347.21 Aligned_cols=293 Identities=22% Similarity=0.323 Sum_probs=239.8
Q ss_pred CCEEEEEccCCCCCCCce--EEEEECCC----CcEEEcccC-CCCCCCceeEEEEECCEEEEEeecCC-C-cccceEEEE
Q psy17309 459 HEILFAIGGWSGGSPTDF--VETYDTRA----DRWVKIDQV-DPMGPRAYHGTAVIGYNIYVIGGFDG-N-EYYNSCRCF 529 (824)
Q Consensus 459 ~~~l~~~GG~~~~~~~~~--~~~yd~~~----~~W~~~~~~-~~~~~r~~~~~~~~~~~lyv~GG~~~-~-~~~~~~~~y 529 (824)
...|+.|+|..... .+. ++.+++.+ ++|..++.. .+|.+|..|+++++++.||++||... . ...+++++|
T Consensus 120 ~~~ivgf~G~~~~~-~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~y 198 (470)
T PLN02193 120 GGKIVGFHGRSTDV-LHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVF 198 (470)
T ss_pred CCeEEEEeccCCCc-EEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEE
Confidence 35677888875432 444 44457655 799987543 46889999999999999999999753 2 244689999
Q ss_pred ECCCCceEEeccC---CC-CcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCC---CcccCceEEEEEC
Q psy17309 530 NAVTKVWKEIAPM---NF-KRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPM---NVERSDASATTLQ 602 (824)
Q Consensus 530 d~~~~~W~~~~~~---~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~ 602 (824)
|+.+++|..++++ |. +|..|++++++++||++||.+....++++++||+.+++|+.++++ |.+|..|++++++
T Consensus 199 D~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~ 278 (470)
T PLN02193 199 DLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADE 278 (470)
T ss_pred ECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEEC
Confidence 9999999987653 33 356889999999999999988777789999999999999999887 8999999999999
Q ss_pred CEEEEEcccCCCCcCCceEEEeCCCCeEEEcCC---CCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEE
Q psy17309 603 GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEP---MRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQ 679 (824)
Q Consensus 603 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 679 (824)
++|||+||.+....++++++||+.+++|+.+++ +|.+|..|++++++++||++||.++. ..+++++||+.+++|+.
T Consensus 279 ~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~dv~~yD~~t~~W~~ 357 (470)
T PLN02193 279 ENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDDVHYYDPVQDKWTQ 357 (470)
T ss_pred CEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCceEEEECCCCEEEE
Confidence 999999999877778899999999999999874 67789999999999999999997654 36899999999999999
Q ss_pred CCCC---CCCCcceEEEEECCEEEEEccCCC---------CceeeEEEEEECCCCcEEeccC------CCCCccceeEE-
Q psy17309 680 VPDM---YNPRSNFAIEVIDDMIFAIGGFNG---------VTTIYHVECYDEKTDEWYEATD------MNIYRSALSAC- 740 (824)
Q Consensus 680 ~~~~---p~~r~~~~~~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~------~p~~r~~~~~~- 740 (824)
++++ |.+|..+++++++++|||+||... ....+++++||+.+++|+.++. .|.+|..++++
T Consensus 358 ~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~ 437 (470)
T PLN02193 358 VETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTT 437 (470)
T ss_pred eccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCcccccee
Confidence 9754 889999999999999999999753 1245789999999999998854 35677766432
Q ss_pred -EEcC--ccceecccc
Q psy17309 741 -VIMG--LPNVYDYIH 753 (824)
Q Consensus 741 -~~~~--~~~~~~~~~ 753 (824)
.+.+ .++++++..
T Consensus 438 ~~~~~~~~~~~fGG~~ 453 (470)
T PLN02193 438 GTIDGKKGLVMHGGKA 453 (470)
T ss_pred eEEcCCceEEEEcCCC
Confidence 3333 377776554
No 12
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=7.6e-38 Score=349.88 Aligned_cols=428 Identities=17% Similarity=0.196 Sum_probs=289.2
Q ss_pred eeeeeeecceEEEEcccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHHHHHHhh
Q psy17309 223 YVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKR 302 (824)
Q Consensus 223 ~~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c~~~l~~ 302 (824)
+-.+.+|+.+|.+.++||+........... . ....+ .+.++.+ .++...+|+-.
T Consensus 30 ~~~~~~HR~VLAa~S~YFraMF~~~~~Es~--~-~v~~~-------~~~v~~~----------------~l~~lldy~YT 83 (480)
T PHA02790 30 GGNIIVNSTILKKLSPYFRTHLRQKYTKNK--D-PVTRV-------CLDLDIH----------------SLTSIVIYSYT 83 (480)
T ss_pred CcEEeeehhhhhhcCHHHHHHhcCCccccc--c-ceEEE-------ecCcCHH----------------HHHHHHHhhee
Confidence 346889999999999999875443322110 0 00000 0123333 34445566744
Q ss_pred ---cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----------------HHHcCchhhhcCCHHHHHHHhcCCC
Q psy17309 303 ---LTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFV-----------------DVARESEEIVFISEQELEEIISSDE 362 (824)
Q Consensus 303 ---~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~-----------------~v~~~~~~f~~L~~~~l~~ll~~d~ 362 (824)
.|+.+|+..++..|..++++.|.+.|.+|+.+++. ++.+...+|..-++.++.+-...++
T Consensus 84 g~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef 163 (480)
T PHA02790 84 GKVYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNF 163 (480)
T ss_pred eeEEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhh
Confidence 68899999999999999999999999999998752 2332333444344443332001233
Q ss_pred cccCChHHHHHHHHHHHhcCccchHHHHHHhhhhccCCCCChHHHHhhccCCccccCCchhHHHHHHHHHHhhhhhhhhc
Q psy17309 363 LNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFLYDLELIAQ 442 (824)
Q Consensus 363 L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 442 (824)
+.++. ..++.--+.+..++++.++.+++|++........+.+.+.. .+...--....+.+. ..... .
T Consensus 164 ~~L~~-----~~lLssd~L~v~~Ee~V~eav~~Wl~~~~~~~~~l~~~vr~--~ir~~~l~~~~l~~~-~~~~~-~---- 230 (480)
T PHA02790 164 DYLSM-----KLILESDELNVPDEDYVVDFVIKWYMKRRNRLGNLLLLIKN--VIRSNYLSPRGINNV-KWILD-C---- 230 (480)
T ss_pred hhCCH-----HHhcccccCCCccHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCChhhCCHHHHHHH-HHHHH-H----
Confidence 33321 23333334456678889999999988632111122222211 010000001111110 00000 0
Q ss_pred cCCCCCCCCccCCCCCCCEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcc
Q psy17309 443 IDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEY 522 (824)
Q Consensus 443 ~~~~~~~~~~~~~r~~~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~ 522 (824)
.+. +. . .+.+|... . +..++
T Consensus 231 ------------~~~----------------------~~----------~--~~~~r~~~------~--~~~~~------ 250 (480)
T PHA02790 231 ------------TKI----------------------FH----------C--DKQPRKSY------K--YPFIE------ 250 (480)
T ss_pred ------------HHH----------------------hh----------c--cccccccc------c--ccccc------
Confidence 000 00 0 00111110 0 00010
Q ss_pred cceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC
Q psy17309 523 YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 602 (824)
Q Consensus 523 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 602 (824)
+.+.+.+|..... ...++..++.||++||.++....+++++|||.+++|..+++||.+|..+++++++
T Consensus 251 ------~~~~~~~~~~~~~------~~~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~ 318 (480)
T PHA02790 251 ------YPMNMDQIIDIFH------MCTSTHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPAN 318 (480)
T ss_pred ------cCCcccceeeccC------CcceEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEEC
Confidence 2345556765321 1224558999999999876667789999999999999999999999999999999
Q ss_pred CEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCC
Q psy17309 603 GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPD 682 (824)
Q Consensus 603 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 682 (824)
|+||++||.++ .+++++|||.+++|+.+++||.+|..+++++++|+||++||.++. .+.+++|||.+++|+.+++
T Consensus 319 ~~iYviGG~~~---~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 319 NKLYVVGGLPN---PTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET--DTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred CEEEEECCcCC---CCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC--CccEEEEeCCCCEEEeCCC
Confidence 99999999854 267999999999999999999999999999999999999997543 3679999999999999999
Q ss_pred CCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEEeccCCCCCccceeEEEEcCccceeccccccccchhhH
Q psy17309 683 MYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGLPNVYDYIHQHRDSLMEE 762 (824)
Q Consensus 683 ~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (824)
||.+|..+++++++++||++||. +++|||++++|+.+++||.+|..+++++++++||+.++.....
T Consensus 394 m~~~r~~~~~~~~~~~IYv~GG~--------~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~------ 459 (480)
T PHA02790 394 TYYPHYKSCALVFGRRLFLVGRN--------AEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGS------ 459 (480)
T ss_pred CCCccccceEEEECCEEEEECCc--------eEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCc------
Confidence 99999999999999999999983 6889999999999999999999999999999999997653211
Q ss_pred hhhhhhcccccccccccccCCCCCcccc
Q psy17309 763 KRQKLLAIEGRQRQNQSEEGNSSQQSVL 790 (824)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 790 (824)
.+-.++. ||+..++|+..
T Consensus 460 ---~~~~ve~-------Yd~~~~~W~~~ 477 (480)
T PHA02790 460 ---YIDTIEV-------YNNRTYSWNIW 477 (480)
T ss_pred ---ccceEEE-------EECCCCeEEec
Confidence 1223454 99999999754
No 13
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.4e-36 Score=328.91 Aligned_cols=258 Identities=20% Similarity=0.256 Sum_probs=214.3
Q ss_pred CCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEEC--CCCceEEeccCC-CCcceEEEEEECCEEEEEecccCCC-
Q psy17309 493 VDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNA--VTKVWKEIAPMN-FKRCYVSTAVHQDVIYAMGGYNGQR- 568 (824)
Q Consensus 493 ~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~- 568 (824)
+++|.+|..+++++++++|||+||... +++++||+ .+++|..+++|| .+|..+++++++++|||+||.....
T Consensus 2 ~~lp~~~~~~~~~~~~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~ 77 (346)
T TIGR03547 2 PDLPVGFKNGTGAIIGDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANS 77 (346)
T ss_pred CCCCccccCceEEEECCEEEEEccccC----CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCC
Confidence 457788998888899999999999742 67899996 578899999999 5899999999999999999985321
Q ss_pred -----CCCeEEEEeCCCCcEEeec-CCCcccCceEEE-EECCEEEEEcccCCCC--------------------------
Q psy17309 569 -----RQNSVEKYNYTENQWSLIA-PMNVERSDASAT-TLQGKIYITGGFNGHN-------------------------- 615 (824)
Q Consensus 569 -----~~~~~~~yd~~t~~W~~~~-~~p~~r~~~~~~-~~~~~lyv~GG~~~~~-------------------------- 615 (824)
.++++|+||+.+++|+.++ ++|.+|.+++++ +++++||++||.+...
T Consensus 78 ~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (346)
T TIGR03547 78 EGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYF 157 (346)
T ss_pred CCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHh
Confidence 4688999999999999997 567888888777 7899999999986321
Q ss_pred --------cCCceEEEeCCCCeEEEcCCCCC-CCcceEEEEECCEEEEEecCCCCC-ccceEEEEe--CCCCCEEECCCC
Q psy17309 616 --------CLNSCEVYDPECNQWTLIEPMRH-RRSGVSCIAYHECIYVIGGFNGMS-RMCNGEKYN--PVTKTWSQVPDM 683 (824)
Q Consensus 616 --------~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd--~~~~~W~~~~~~ 683 (824)
..+++++|||.+++|+.+++||. +|..++++.++++|||+||..... ....++.|| +++++|+.+++|
T Consensus 158 ~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m 237 (346)
T TIGR03547 158 SQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPL 237 (346)
T ss_pred CCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCC
Confidence 14789999999999999999996 688999999999999999975332 234565555 577799999999
Q ss_pred CCCCc-------ceEEEEECCEEEEEccCCCC-----------------ceeeEEEEEECCCCcEEeccCCCCCccceeE
Q psy17309 684 YNPRS-------NFAIEVIDDMIFAIGGFNGV-----------------TTIYHVECYDEKTDEWYEATDMNIYRSALSA 739 (824)
Q Consensus 684 p~~r~-------~~~~~~~~~~i~v~GG~~~~-----------------~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~ 739 (824)
|.+|. .+++++++++|||+||.+.. .....+++||+++++|+.+++||.+|..+++
T Consensus 238 ~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~ 317 (346)
T TIGR03547 238 PPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVS 317 (346)
T ss_pred CCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeEE
Confidence 88763 44577889999999997521 1234789999999999999999999999999
Q ss_pred EEEcCccceeccccc
Q psy17309 740 CVIMGLPNVYDYIHQ 754 (824)
Q Consensus 740 ~~~~~~~~~~~~~~~ 754 (824)
++++++||++++...
T Consensus 318 ~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 318 VSWNNGVLLIGGENS 332 (346)
T ss_pred EEcCCEEEEEeccCC
Confidence 899999999977543
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=3e-36 Score=322.46 Aligned_cols=256 Identities=21% Similarity=0.338 Sum_probs=215.5
Q ss_pred CCceeEEEEECCEEEEEeecCCC----------cccceEEEEE-CCC-CceEEeccCCCCcceEEEEEECCEEEEEeccc
Q psy17309 498 PRAYHGTAVIGYNIYVIGGFDGN----------EYYNSCRCFN-AVT-KVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN 565 (824)
Q Consensus 498 ~r~~~~~~~~~~~lyv~GG~~~~----------~~~~~~~~yd-~~~-~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 565 (824)
.+.++.++++++.|||+||.+.. ...+++++|+ +.. .+|..+++||.+|..+++++++++||++||.+
T Consensus 3 ~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~ 82 (323)
T TIGR03548 3 GVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSN 82 (323)
T ss_pred ceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCC
Confidence 56788899999999999998542 2346788886 332 37999999999999899999999999999988
Q ss_pred CCCCCCeEEEEeCCCCcE----EeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCC-CC
Q psy17309 566 GQRRQNSVEKYNYTENQW----SLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRH-RR 640 (824)
Q Consensus 566 ~~~~~~~~~~yd~~t~~W----~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r 640 (824)
+...++++++||+.+++| +.+++||.+|..|++++++++|||+||.......+++++||+.+++|+.++++|. +|
T Consensus 83 ~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r 162 (323)
T TIGR03548 83 SSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR 162 (323)
T ss_pred CCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC
Confidence 777789999999999998 7789999999999999999999999998655567899999999999999999884 78
Q ss_pred cceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCC---CCC--cceE-EEEECCEEEEEccCCCCc-----
Q psy17309 641 SGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMY---NPR--SNFA-IEVIDDMIFAIGGFNGVT----- 709 (824)
Q Consensus 641 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p---~~r--~~~~-~~~~~~~i~v~GG~~~~~----- 709 (824)
..+++++++++|||+||.+... ..++++||+++++|+.+++++ .|+ ..++ ++..+++||++||.+...
T Consensus 163 ~~~~~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 241 (323)
T TIGR03548 163 VQPVCVKLQNELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAV 241 (323)
T ss_pred CcceEEEECCEEEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHH
Confidence 8898899999999999976433 457899999999999998763 233 3344 344479999999987421
Q ss_pred ---------------------------eeeEEEEEECCCCcEEeccCCC-CCccceeEEEEcCccceeccccc
Q psy17309 710 ---------------------------TIYHVECYDEKTDEWYEATDMN-IYRSALSACVIMGLPNVYDYIHQ 754 (824)
Q Consensus 710 ---------------------------~~~~v~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~~~~~~~~~~ 754 (824)
..+++++||+.+++|+.++++| .+|..+++++++++||++++...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 242 IDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGELK 314 (323)
T ss_pred hhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEecccc
Confidence 1367999999999999999888 58999999999999999876543
No 15
>KOG4693|consensus
Probab=100.00 E-value=3.1e-35 Score=276.61 Aligned_cols=267 Identities=21% Similarity=0.341 Sum_probs=227.5
Q ss_pred cEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcc-----cceEEEEECCCCceEEecc-------------CCCCcc
Q psy17309 486 RWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEY-----YNSCRCFNAVTKVWKEIAP-------------MNFKRC 547 (824)
Q Consensus 486 ~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~-----~~~~~~yd~~~~~W~~~~~-------------~~~~r~ 547 (824)
.|.. .....+.|.+|+++.++.+||-|||+..+.. --+++++|..+-+|.++++ .|..|+
T Consensus 3 ~WTV--HLeGGPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRY 80 (392)
T KOG4693|consen 3 TWTV--HLEGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRY 80 (392)
T ss_pred eEEE--EecCCcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhc
Confidence 4655 4445557999999999999999999854322 2478999999999998875 245699
Q ss_pred eEEEEEECCEEEEEecccC-CCCCCeEEEEeCCCCcEEee---cCCCcccCceEEEEECCEEEEEcccCC--CCcCCceE
Q psy17309 548 YVSTAVHQDVIYAMGGYNG-QRRQNSVEKYNYTENQWSLI---APMNVERSDASATTLQGKIYITGGFNG--HNCLNSCE 621 (824)
Q Consensus 548 ~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~t~~W~~~---~~~p~~r~~~~~~~~~~~lyv~GG~~~--~~~~~~v~ 621 (824)
+|+++.+++++|+.||.+. .+..+.++.|||++++|++. +-+|.+|.+|++|+.++.+|||||+.. ....++++
T Consensus 81 GHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h 160 (392)
T KOG4693|consen 81 GHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTH 160 (392)
T ss_pred CceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccce
Confidence 9999999999999999975 55678999999999999875 458999999999999999999999954 46789999
Q ss_pred EEeCCCCeEEEcC---CCCCCCcceEEEEECCEEEEEecCCCCC---------ccceEEEEeCCCCCEEECC---CCCCC
Q psy17309 622 VYDPECNQWTLIE---PMRHRRSGVSCIAYHECIYVIGGFNGMS---------RMCNGEKYNPVTKTWSQVP---DMYNP 686 (824)
Q Consensus 622 ~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~---------~~~~v~~yd~~~~~W~~~~---~~p~~ 686 (824)
.+|..|.+|+.+. ..|.-|..|+++++++.+|||||..+.. ..+.+..+|+.+..|...+ ..|..
T Consensus 161 ~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~G 240 (392)
T KOG4693|consen 161 VLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGG 240 (392)
T ss_pred eEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCc
Confidence 9999999999985 4456689999999999999999964332 2467889999999999885 35889
Q ss_pred CcceEEEEECCEEEEEccCCCCc--eeeEEEEEECCCCcEEec---cCCCCCccceeEEEEcCccceeccccc
Q psy17309 687 RSNFAIEVIDDMIFAIGGFNGVT--TIYHVECYDEKTDEWYEA---TDMNIYRSALSACVIMGLPNVYDYIHQ 754 (824)
Q Consensus 687 r~~~~~~~~~~~i~v~GG~~~~~--~~~~v~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~~~~~~~~~~ 754 (824)
|.+|++.++++++|+|||.++.- ..+++|.|||.+..|+.+ +.-|.+|..+++++.++++|+|++-..
T Consensus 241 RRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 241 RRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred ccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 99999999999999999998753 568999999999999998 567999999999999999999965443
No 16
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.3e-34 Score=315.18 Aligned_cols=259 Identities=20% Similarity=0.237 Sum_probs=212.9
Q ss_pred cCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECC--CCceEEeccCC-CCcceEEEEEECCEEEEEecccC--
Q psy17309 492 QVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAV--TKVWKEIAPMN-FKRCYVSTAVHQDVIYAMGGYNG-- 566 (824)
Q Consensus 492 ~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~-- 566 (824)
.+++|.+|..+++++++++|||+||... +.+++||+. +++|..++++| .+|..+++++++++||++||...
T Consensus 22 l~~lP~~~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~ 97 (376)
T PRK14131 22 LPDLPVPFKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTN 97 (376)
T ss_pred CCCCCcCccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCC
Confidence 5678888888888999999999999643 458899986 47899999997 58999999999999999999764
Q ss_pred ----CCCCCeEEEEeCCCCcEEeecC-CCcccCceEEEE-ECCEEEEEcccCCC--------------------------
Q psy17309 567 ----QRRQNSVEKYNYTENQWSLIAP-MNVERSDASATT-LQGKIYITGGFNGH-------------------------- 614 (824)
Q Consensus 567 ----~~~~~~~~~yd~~t~~W~~~~~-~p~~r~~~~~~~-~~~~lyv~GG~~~~-------------------------- 614 (824)
...++++++||+.+++|+.+++ +|.++.+|++++ .+++|||+||.+..
T Consensus 98 ~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~ 177 (376)
T PRK14131 98 SEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAY 177 (376)
T ss_pred CCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHH
Confidence 1236889999999999999985 577888888777 79999999997531
Q ss_pred --------CcCCceEEEeCCCCeEEEcCCCCC-CCcceEEEEECCEEEEEecCCCCC-ccceEE--EEeCCCCCEEECCC
Q psy17309 615 --------NCLNSCEVYDPECNQWTLIEPMRH-RRSGVSCIAYHECIYVIGGFNGMS-RMCNGE--KYNPVTKTWSQVPD 682 (824)
Q Consensus 615 --------~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~--~yd~~~~~W~~~~~ 682 (824)
...+++++||+.+++|+.++++|. +|..++++.++++|||+||..... ...+++ .||+++++|+.+++
T Consensus 178 ~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 257 (376)
T PRK14131 178 FDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD 257 (376)
T ss_pred hcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC
Confidence 124789999999999999999996 688888999999999999964322 234444 56788999999999
Q ss_pred CCCCCcc--------eEEEEECCEEEEEccCCCCc-----------------eeeEEEEEECCCCcEEeccCCCCCccce
Q psy17309 683 MYNPRSN--------FAIEVIDDMIFAIGGFNGVT-----------------TIYHVECYDEKTDEWYEATDMNIYRSAL 737 (824)
Q Consensus 683 ~p~~r~~--------~~~~~~~~~i~v~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~p~~r~~~ 737 (824)
||.+|.. +.+++++++|||+||.+... ....+++||+++++|+.++.||.+|..+
T Consensus 258 ~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~ 337 (376)
T PRK14131 258 LPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYG 337 (376)
T ss_pred CCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccce
Confidence 9887642 22567899999999975321 1235789999999999999999999999
Q ss_pred eEEEEcCccceeccccc
Q psy17309 738 SACVIMGLPNVYDYIHQ 754 (824)
Q Consensus 738 ~~~~~~~~~~~~~~~~~ 754 (824)
+++++++++|++++...
T Consensus 338 ~av~~~~~iyv~GG~~~ 354 (376)
T PRK14131 338 VSVSWNNGVLLIGGETA 354 (376)
T ss_pred EEEEeCCEEEEEcCCCC
Confidence 99999999999987543
No 17
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=4.7e-34 Score=309.07 Aligned_cols=254 Identities=18% Similarity=0.248 Sum_probs=205.8
Q ss_pred CCEEEEEccCCCCCCCceEEEEEC--CCCcEEEcccCCCC-CCCceeEEEEECCEEEEEeecCCC------cccceEEEE
Q psy17309 459 HEILFAIGGWSGGSPTDFVETYDT--RADRWVKIDQVDPM-GPRAYHGTAVIGYNIYVIGGFDGN------EYYNSCRCF 529 (824)
Q Consensus 459 ~~~l~~~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~~~~-~~r~~~~~~~~~~~lyv~GG~~~~------~~~~~~~~y 529 (824)
.+.||++||.. .+.++.||+ .+++|.. .+++| .+|..+++++++++|||+||.... ..++++++|
T Consensus 17 ~~~vyv~GG~~----~~~~~~~d~~~~~~~W~~--l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Y 90 (346)
T TIGR03547 17 GDKVYVGLGSA----GTSWYKLDLKKPSKGWQK--IADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRY 90 (346)
T ss_pred CCEEEEEcccc----CCeeEEEECCCCCCCceE--CCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEE
Confidence 56899999963 256889995 6789999 45666 489999999999999999998532 146889999
Q ss_pred ECCCCceEEec-cCCCCcceEEEE-EECCEEEEEecccCC----------------------------------CCCCeE
Q psy17309 530 NAVTKVWKEIA-PMNFKRCYVSTA-VHQDVIYAMGGYNGQ----------------------------------RRQNSV 573 (824)
Q Consensus 530 d~~~~~W~~~~-~~~~~r~~~~~~-~~~~~iyv~GG~~~~----------------------------------~~~~~~ 573 (824)
|+.+++|+.++ ++|.+|.+++++ +++++||++||.+.. ..++++
T Consensus 91 d~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (346)
T TIGR03547 91 DPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNV 170 (346)
T ss_pred ECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceE
Confidence 99999999997 456777777766 789999999997532 014789
Q ss_pred EEEeCCCCcEEeecCCCc-ccCceEEEEECCEEEEEcccCCCC-cCCceEEEe--CCCCeEEEcCCCCCCC-------cc
Q psy17309 574 EKYNYTENQWSLIAPMNV-ERSDASATTLQGKIYITGGFNGHN-CLNSCEVYD--PECNQWTLIEPMRHRR-------SG 642 (824)
Q Consensus 574 ~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd--~~~~~W~~~~~~p~~r-------~~ 642 (824)
++|||.+++|+.+++||. +|..+++++++++|||+||..... ....++.|| +++++|+.+++||.+| ..
T Consensus 171 ~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~ 250 (346)
T TIGR03547 171 LSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAG 250 (346)
T ss_pred EEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccE
Confidence 999999999999999996 789999999999999999985432 234565565 5778999999998765 34
Q ss_pred eEEEEECCEEEEEecCCCCC-----------------ccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccC
Q psy17309 643 VSCIAYHECIYVIGGFNGMS-----------------RMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGF 705 (824)
Q Consensus 643 ~~~~~~~~~iyv~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~ 705 (824)
|++++++++|||+||.+... ....+++||+++++|+.+++||.+|..+++++++++|||+||.
T Consensus 251 ~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~ 330 (346)
T TIGR03547 251 AFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGE 330 (346)
T ss_pred EeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEecc
Confidence 55778899999999975211 1246899999999999999999999999988999999999998
Q ss_pred CCC-ceeeEEEEEE
Q psy17309 706 NGV-TTIYHVECYD 718 (824)
Q Consensus 706 ~~~-~~~~~v~~yd 718 (824)
+.. ..+++|+.|.
T Consensus 331 ~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 331 NSGGKAVTDVYLLS 344 (346)
T ss_pred CCCCCEeeeEEEEE
Confidence 754 4667777664
No 18
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=2.3e-34 Score=307.84 Aligned_cols=246 Identities=21% Similarity=0.286 Sum_probs=204.6
Q ss_pred CCEEEEEccCCCCC----------CCceEEEEE-CCC-CcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceE
Q psy17309 459 HEILFAIGGWSGGS----------PTDFVETYD-TRA-DRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSC 526 (824)
Q Consensus 459 ~~~l~~~GG~~~~~----------~~~~~~~yd-~~~-~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 526 (824)
.+.|+++||.+... ..++++.|+ +.. .+|.. .+++|.+|..++++++++.||++||.++....+++
T Consensus 13 ~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~--~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v 90 (323)
T TIGR03548 13 GDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVK--DGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSV 90 (323)
T ss_pred CCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEE--cccCCccccceEEEEECCEEEEEcCCCCCCCceeE
Confidence 46899999986532 234677775 332 37988 56788899888889999999999999877778999
Q ss_pred EEEECCCCce----EEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCC-cccCceEEEEE
Q psy17309 527 RCFNAVTKVW----KEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMN-VERSDASATTL 601 (824)
Q Consensus 527 ~~yd~~~~~W----~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p-~~r~~~~~~~~ 601 (824)
++||+.+++| ..+++||.+|..|++++++++||++||......++++++||+.+++|+.+++|| .+|..|+++++
T Consensus 91 ~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~ 170 (323)
T TIGR03548 91 YRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKL 170 (323)
T ss_pred EEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEE
Confidence 9999999988 788999999999999999999999999865556899999999999999999998 48999999999
Q ss_pred CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCC---CC--CcceEEE-EECCEEEEEecCCCCC-------------
Q psy17309 602 QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMR---HR--RSGVSCI-AYHECIYVIGGFNGMS------------- 662 (824)
Q Consensus 602 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p---~~--r~~~~~~-~~~~~iyv~GG~~~~~------------- 662 (824)
+++|||+||.++.. ..++++||+++++|+.+++|+ .| +..++++ ..+++|||+||.+...
T Consensus 171 ~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 249 (323)
T TIGR03548 171 QNELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKD 249 (323)
T ss_pred CCEEEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccc
Confidence 99999999986533 457899999999999998763 23 3344444 4479999999976421
Q ss_pred -------------------ccceEEEEeCCCCCEEECCCCC-CCCcceEEEEECCEEEEEccCCC
Q psy17309 663 -------------------RMCNGEKYNPVTKTWSQVPDMY-NPRSNFAIEVIDDMIFAIGGFNG 707 (824)
Q Consensus 663 -------------------~~~~v~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~ 707 (824)
..+++++||+.+++|+.++++| .+|..+++++++++||++||...
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 250 ESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGELK 314 (323)
T ss_pred hhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEecccc
Confidence 1367999999999999999887 68999999999999999999754
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=3.2e-33 Score=304.32 Aligned_cols=262 Identities=17% Similarity=0.242 Sum_probs=211.3
Q ss_pred CCEEEEEccCCCCCCCceEEEEECC--CCcEEEcccCCCC-CCCceeEEEEECCEEEEEeecCC------CcccceEEEE
Q psy17309 459 HEILFAIGGWSGGSPTDFVETYDTR--ADRWVKIDQVDPM-GPRAYHGTAVIGYNIYVIGGFDG------NEYYNSCRCF 529 (824)
Q Consensus 459 ~~~l~~~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~~~~-~~r~~~~~~~~~~~lyv~GG~~~------~~~~~~~~~y 529 (824)
.+.||++||... +.++.||.. +++|..+ +++| .+|..+++++++++|||+||... ....+++++|
T Consensus 38 ~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l--~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~Y 111 (376)
T PRK14131 38 NNTVYVGLGSAG----TSWYKLDLNAPSKGWTKI--AAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKY 111 (376)
T ss_pred CCEEEEEeCCCC----CeEEEEECCCCCCCeEEC--CcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEE
Confidence 578999998632 457889876 4789985 4554 48999999999999999999854 1246889999
Q ss_pred ECCCCceEEecc-CCCCcceEEEEE-ECCEEEEEecccCC----------------------------------CCCCeE
Q psy17309 530 NAVTKVWKEIAP-MNFKRCYVSTAV-HQDVIYAMGGYNGQ----------------------------------RRQNSV 573 (824)
Q Consensus 530 d~~~~~W~~~~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~----------------------------------~~~~~~ 573 (824)
|+.+++|+.+++ +|.++.+|++++ .+++||++||.... ...+++
T Consensus 112 D~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v 191 (376)
T PRK14131 112 DPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEV 191 (376)
T ss_pred eCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceE
Confidence 999999999986 466777787776 89999999997531 124789
Q ss_pred EEEeCCCCcEEeecCCCc-ccCceEEEEECCEEEEEcccCCC-CcCCceE--EEeCCCCeEEEcCCCCCCCcc-------
Q psy17309 574 EKYNYTENQWSLIAPMNV-ERSDASATTLQGKIYITGGFNGH-NCLNSCE--VYDPECNQWTLIEPMRHRRSG------- 642 (824)
Q Consensus 574 ~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~-~~~~~v~--~yd~~~~~W~~~~~~p~~r~~------- 642 (824)
++||+.+++|+.++++|. +|.+++++.++++|||+||.... .....++ .||+++++|+.+++||.+|..
T Consensus 192 ~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~ 271 (376)
T PRK14131 192 LSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVA 271 (376)
T ss_pred EEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccc
Confidence 999999999999999996 78899999999999999997432 2233444 467899999999999887642
Q ss_pred -eEEEEECCEEEEEecCCCCC-----------------ccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEcc
Q psy17309 643 -VSCIAYHECIYVIGGFNGMS-----------------RMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGG 704 (824)
Q Consensus 643 -~~~~~~~~~iyv~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG 704 (824)
+.+++++++|||+||.+... ....+++||+++++|+.+++||.+|..+++++++++|||+||
T Consensus 272 ~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG 351 (376)
T PRK14131 272 GAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGG 351 (376)
T ss_pred eEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcC
Confidence 23567899999999965321 113578999999999999999999999999999999999999
Q ss_pred CCCC-ceeeEEEEEECCCCcEEe
Q psy17309 705 FNGV-TTIYHVECYDEKTDEWYE 726 (824)
Q Consensus 705 ~~~~-~~~~~v~~yd~~~~~W~~ 726 (824)
.... ...+++++|+++++.|+.
T Consensus 352 ~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 352 ETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred CCCCCcEeeeEEEEEEcCCEEEE
Confidence 8643 578899999999888765
No 20
>KOG4693|consensus
Probab=100.00 E-value=2e-32 Score=257.72 Aligned_cols=249 Identities=22% Similarity=0.350 Sum_probs=213.1
Q ss_pred CCEEEEEccCCCCCC-----CceEEEEECCCCcEEEccc-----------CCCCCCCceeEEEEECCEEEEEeecCC-Cc
Q psy17309 459 HEILFAIGGWSGGSP-----TDFVETYDTRADRWVKIDQ-----------VDPMGPRAYHGTAVIGYNIYVIGGFDG-NE 521 (824)
Q Consensus 459 ~~~l~~~GG~~~~~~-----~~~~~~yd~~~~~W~~~~~-----------~~~~~~r~~~~~~~~~~~lyv~GG~~~-~~ 521 (824)
...|+-|||.-+++. .-+++.++..+-+|.+++. +..|..|.+|+++..++++|+.||.+. ..
T Consensus 23 G~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~eg 102 (392)
T KOG4693|consen 23 GSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEG 102 (392)
T ss_pred cceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCccc
Confidence 467999999866543 2368999999999999753 223446999999999999999999965 55
Q ss_pred ccceEEEEECCCCceEEec---cCCCCcceEEEEEECCEEEEEeccc--CCCCCCeEEEEeCCCCcEEee---cCCCccc
Q psy17309 522 YYNSCRCFNAVTKVWKEIA---PMNFKRCYVSTAVHQDVIYAMGGYN--GQRRQNSVEKYNYTENQWSLI---APMNVER 593 (824)
Q Consensus 522 ~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~yd~~t~~W~~~---~~~p~~r 593 (824)
..+.+++|||++++|++.. -.|.+|.+|++|++++.+|+|||+. .+..++++..+|..|.+|+.+ ...|.-|
T Consensus 103 aCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR 182 (392)
T KOG4693|consen 103 ACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR 182 (392)
T ss_pred ccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh
Confidence 6788999999999998643 5688999999999999999999986 345678999999999999987 4567789
Q ss_pred CceEEEEECCEEEEEcccCCC---------CcCCceEEEeCCCCeEEEcCC---CCCCCcceEEEEECCEEEEEecCCCC
Q psy17309 594 SDASATTLQGKIYITGGFNGH---------NCLNSCEVYDPECNQWTLIEP---MRHRRSGVSCIAYHECIYVIGGFNGM 661 (824)
Q Consensus 594 ~~~~~~~~~~~lyv~GG~~~~---------~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~ 661 (824)
..|+++++++.+|||||..+. .+.+.+..+|..|..|...++ .|..|..|++.+++++||+|||+++.
T Consensus 183 DFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ 262 (392)
T KOG4693|consen 183 DFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGT 262 (392)
T ss_pred hhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchh
Confidence 999999999999999997542 356788899999999998863 57889999999999999999999875
Q ss_pred C--ccceEEEEeCCCCCEEECC---CCCCCCcceEEEEECCEEEEEccCCC
Q psy17309 662 S--RMCNGEKYNPVTKTWSQVP---DMYNPRSNFAIEVIDDMIFAIGGFNG 707 (824)
Q Consensus 662 ~--~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~ 707 (824)
- ..+++++|||.+..|+.+. .-|.+|..+.+++.++|+|+|||...
T Consensus 263 ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 263 LNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred hhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 3 4789999999999999984 56899999999999999999999764
No 21
>KOG0379|consensus
Probab=99.96 E-value=4.4e-28 Score=269.19 Aligned_cols=258 Identities=24% Similarity=0.356 Sum_probs=224.4
Q ss_pred cCCCCCCCceeEEEEECCEEEEEeecCCCcccc--eEEEEECCCCceEEec---cCCCCcceEEEEEECCEEEEEecccC
Q psy17309 492 QVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYN--SCRCFNAVTKVWKEIA---PMNFKRCYVSTAVHQDVIYAMGGYNG 566 (824)
Q Consensus 492 ~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~--~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~ 566 (824)
....|.+|..|+++.+++++||+||........ ++|.+|..+..|.... ..|.+|.+|++++++++||+|||.+.
T Consensus 54 ~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~ 133 (482)
T KOG0379|consen 54 LGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDK 133 (482)
T ss_pred CCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccC
Confidence 345677899999999999999999986555444 4999999999998654 45789999999999999999999883
Q ss_pred -CCCCCeEEEEeCCCCcEEeec---CCCcccCceEEEEECCEEEEEcccCCCC-cCCceEEEeCCCCeEEEcC---CCCC
Q psy17309 567 -QRRQNSVEKYNYTENQWSLIA---PMNVERSDASATTLQGKIYITGGFNGHN-CLNSCEVYDPECNQWTLIE---PMRH 638 (824)
Q Consensus 567 -~~~~~~~~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~---~~p~ 638 (824)
....++++.||+.|++|+.+. ..|.+|.+|++++++++|||+||.+... .++++++||+++.+|.++. +.|.
T Consensus 134 ~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~ 213 (482)
T KOG0379|consen 134 KYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS 213 (482)
T ss_pred CCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCC
Confidence 556789999999999998874 5799999999999999999999998755 8999999999999999985 6788
Q ss_pred CCcceEEEEECCEEEEEecCC-CCCccceEEEEeCCCCCEEECC---CCCCCCcceEEEEECCEEEEEccCCCC--ceee
Q psy17309 639 RRSGVSCIAYHECIYVIGGFN-GMSRMCNGEKYNPVTKTWSQVP---DMYNPRSNFAIEVIDDMIFAIGGFNGV--TTIY 712 (824)
Q Consensus 639 ~r~~~~~~~~~~~iyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~--~~~~ 712 (824)
||.+|++++++++++++||.+ +...+++++.+|+.+.+|..+. ..|.+|+.|..++.+.+++++||.... ..+.
T Consensus 214 pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~ 293 (482)
T KOG0379|consen 214 PRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLG 293 (482)
T ss_pred CCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccccccccc
Confidence 999999999999999999987 6667999999999999999764 579999999999999999999998764 2688
Q ss_pred EEEEEECCCCcEEecc----CCCCCccceeEEEEcCcccee
Q psy17309 713 HVECYDEKTDEWYEAT----DMNIYRSALSACVIMGLPNVY 749 (824)
Q Consensus 713 ~v~~yd~~~~~W~~~~----~~p~~r~~~~~~~~~~~~~~~ 749 (824)
+++.||..+..|..+. ..|.+|..++++.+.......
T Consensus 294 ~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (482)
T KOG0379|consen 294 DLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDG 334 (482)
T ss_pred ccccccccccceeeeeccccccccccccccceeeccCCccc
Confidence 9999999999999983 346788888887776654444
No 22
>KOG4152|consensus
Probab=99.96 E-value=3.6e-28 Score=247.78 Aligned_cols=137 Identities=25% Similarity=0.329 Sum_probs=117.7
Q ss_pred ccchhhhhhhhhhcccCCCCCCCCCCCCcCC--CcEEEEEccCCCCCCCcceEEEECCCCcEEeeccCC-CCCCcCeEEE
Q psy17309 14 IETFKFLYDLELIAQIDGEVPTPEIARPRVP--HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVD-PMGPRAYHGT 90 (824)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~i~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~-~p~~R~~h~~ 90 (824)
.++.+-+-+|+.+++.+|.+|.| |+..|.. ++.|+||||-++. ..+++++||..+++|...+.-+ .|.+...|+.
T Consensus 10 ~~a~~~~~rWrrV~~~tGPvPrp-RHGHRAVaikELiviFGGGNEG-iiDELHvYNTatnqWf~PavrGDiPpgcAA~Gf 87 (830)
T KOG4152|consen 10 EEAEKNVVRWRRVQQSTGPVPRP-RHGHRAVAIKELIVIFGGGNEG-IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGF 87 (830)
T ss_pred chhhhcccceEEEecccCCCCCc-cccchheeeeeeEEEecCCccc-chhhhhhhccccceeecchhcCCCCCchhhcce
Confidence 35556588999999999999888 6555522 5899999996554 6889999999999999888777 7899999999
Q ss_pred EEECCEEEEEccC-CCCcccceEEEEEccCCceeEe-------cccCCCcceeEEEEECCEEEEEcCcCC
Q psy17309 91 AVIGYNIYVIGGF-DGNEYYNSCRCFNAVTKVWKEI-------APMNFKRCYVSTAVHQDVIYAMGGYNG 152 (824)
Q Consensus 91 ~~~~~~~yv~GG~-~~~~~~~~~~~~~~~~~~W~~~-------~~~~~~R~~~~~~~~~~~lyv~GG~~~ 152 (824)
+..+++||+|||+ +-+++.||++.+...-..|+++ +++|.||-+|+-.+++++-|+|||..+
T Consensus 88 vcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaN 157 (830)
T KOG4152|consen 88 VCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLAN 157 (830)
T ss_pred EecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccc
Confidence 9999999999995 4567999999999999999998 466788999999999999999999754
No 23
>KOG0379|consensus
Probab=99.96 E-value=3e-27 Score=262.58 Aligned_cols=155 Identities=24% Similarity=0.364 Sum_probs=135.6
Q ss_pred CCCCCceeEEEEECCEEEEEeecCCCc-ccceEEEEECCCCceEEec---cCCCCcceEEEEEECCEEEEEeccc-CCCC
Q psy17309 495 PMGPRAYHGTAVIGYNIYVIGGFDGNE-YYNSCRCFNAVTKVWKEIA---PMNFKRCYVSTAVHQDVIYAMGGYN-GQRR 569 (824)
Q Consensus 495 ~~~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~ 569 (824)
.|.+|.+|++++++++|||+||.+... ..+++|+||+.+.+|.++. +.|.||.+|++++++++++++||.. +...
T Consensus 160 ~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~ 239 (482)
T KOG0379|consen 160 PPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVY 239 (482)
T ss_pred CCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCce
Confidence 456899999999999999999997655 8899999999999999875 4578999999999999999999988 7778
Q ss_pred CCeEEEEeCCCCcEEeec---CCCcccCceEEEEECCEEEEEcccCCC--CcCCceEEEeCCCCeEEEcCCC----CCCC
Q psy17309 570 QNSVEKYNYTENQWSLIA---PMNVERSDASATTLQGKIYITGGFNGH--NCLNSCEVYDPECNQWTLIEPM----RHRR 640 (824)
Q Consensus 570 ~~~~~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~--~~~~~v~~yd~~~~~W~~~~~~----p~~r 640 (824)
+++++.+|..+.+|..+. ..|.+|+.|+++..+.+++++||.... ..+.+++.||.++..|+.+... |.+|
T Consensus 240 l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~ 319 (482)
T KOG0379|consen 240 LNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPR 319 (482)
T ss_pred ecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccccccccccccccccceeeeecccccccccc
Confidence 999999999999999664 589999999999999999999998764 3688999999999999998643 5677
Q ss_pred cceEEEEEC
Q psy17309 641 SGVSCIAYH 649 (824)
Q Consensus 641 ~~~~~~~~~ 649 (824)
..++++...
T Consensus 320 ~~~~~~~~~ 328 (482)
T KOG0379|consen 320 LGHAAELID 328 (482)
T ss_pred ccccceeec
Confidence 777777663
No 24
>KOG1230|consensus
Probab=99.95 E-value=4.6e-27 Score=234.90 Aligned_cols=236 Identities=20% Similarity=0.375 Sum_probs=197.4
Q ss_pred cCCCCCCCceeEEEEE--CCEEEEEeec--CCC--cccceEEEEECCCCceEEec--cCCCCcceEEEEEE-CCEEEEEe
Q psy17309 492 QVDPMGPRAYHGTAVI--GYNIYVIGGF--DGN--EYYNSCRCFNAVTKVWKEIA--PMNFKRCYVSTAVH-QDVIYAMG 562 (824)
Q Consensus 492 ~~~~~~~r~~~~~~~~--~~~lyv~GG~--~~~--~~~~~~~~yd~~~~~W~~~~--~~~~~r~~~~~~~~-~~~iyv~G 562 (824)
.-+.|.||.+.++.+. .+.|++|||. ++. ..++++|.||..+++|+.+. +.|.||+.|+++++ .|.+|+||
T Consensus 60 ~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fG 139 (521)
T KOG1230|consen 60 SVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFG 139 (521)
T ss_pred cCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEec
Confidence 3456789999988887 6799999995 332 24789999999999999764 56889999998887 48999999
Q ss_pred cccCC------CCCCeEEEEeCCCCcEEee--cCCCcccCceEEEEECCEEEEEcccCCC----CcCCceEEEeCCCCeE
Q psy17309 563 GYNGQ------RRQNSVEKYNYTENQWSLI--APMNVERSDASATTLQGKIYITGGFNGH----NCLNSCEVYDPECNQW 630 (824)
Q Consensus 563 G~~~~------~~~~~~~~yd~~t~~W~~~--~~~p~~r~~~~~~~~~~~lyv~GG~~~~----~~~~~v~~yd~~~~~W 630 (824)
|.... ....++|.||..+++|+++ +.-|.+|++|.+++...+|++|||+... .+.|++++||+++-+|
T Consensus 140 GEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW 219 (521)
T KOG1230|consen 140 GEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKW 219 (521)
T ss_pred cccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceee
Confidence 96422 1357999999999999998 4579999999999999999999998442 5789999999999999
Q ss_pred EEcCC---CCCCCcceEEEEE-CCEEEEEecCCC---------CCccceEEEEeCCC-----CCEEECCC---CCCCCcc
Q psy17309 631 TLIEP---MRHRRSGVSCIAY-HECIYVIGGFNG---------MSRMCNGEKYNPVT-----KTWSQVPD---MYNPRSN 689 (824)
Q Consensus 631 ~~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~~---------~~~~~~v~~yd~~~-----~~W~~~~~---~p~~r~~ 689 (824)
+++.+ -|.||+++.+.+. .|.|||.||+.. ....++++.++|.. -.|+.+.+ -|.||.+
T Consensus 220 ~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsg 299 (521)
T KOG1230|consen 220 SKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSG 299 (521)
T ss_pred eeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCc
Confidence 99964 4789999999988 999999999743 22467899999988 67999854 4899999
Q ss_pred eEEEEE-CCEEEEEccCCC---------CceeeEEEEEECCCCcEEec
Q psy17309 690 FAIEVI-DDMIFAIGGFNG---------VTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 690 ~~~~~~-~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~ 727 (824)
+++++. +++-++|||... +...++++.||...++|...
T Consensus 300 fsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 300 FSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred eeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 999887 669999999853 22678999999999999754
No 25
>KOG1230|consensus
Probab=99.94 E-value=1.5e-25 Score=224.22 Aligned_cols=299 Identities=20% Similarity=0.277 Sum_probs=220.9
Q ss_pred CCEEEEEccCCCC-C---CCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCC--C----cccceEE
Q psy17309 459 HEILFAIGGWSGG-S---PTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDG--N----EYYNSCR 527 (824)
Q Consensus 459 ~~~l~~~GG~~~~-~---~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~--~----~~~~~~~ 527 (824)
++-|++|||.--+ . -.++++.||.+.++|..+..+..|.||+.|.++++ .|.+|+|||.-. + ..+.++|
T Consensus 78 keELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W 157 (521)
T KOG1230|consen 78 KEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLW 157 (521)
T ss_pred cceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhhee
Confidence 4579999996332 2 24789999999999999988899999999999999 489999999631 1 2378999
Q ss_pred EEECCCCceEEec--cCCCCcceEEEEEECCEEEEEecccCC----CCCCeEEEEeCCCCcEEeecC---CCcccCceEE
Q psy17309 528 CFNAVTKVWKEIA--PMNFKRCYVSTAVHQDVIYAMGGYNGQ----RRQNSVEKYNYTENQWSLIAP---MNVERSDASA 598 (824)
Q Consensus 528 ~yd~~~~~W~~~~--~~~~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~yd~~t~~W~~~~~---~p~~r~~~~~ 598 (824)
.||..+++|.++. .-|.+|++|.+++...+|++|||+... ...|++|+||+.|-+|+++.+ -|.||++|+.
T Consensus 158 ~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~ 237 (521)
T KOG1230|consen 158 LFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQF 237 (521)
T ss_pred eeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceE
Confidence 9999999999875 458899999999999999999998532 357999999999999999843 4899999999
Q ss_pred EEE-CCEEEEEcccCC---------CCcCCceEEEeCCC-----CeEEEcCC---CCCCCcceEEEEE-CCEEEEEecCC
Q psy17309 599 TTL-QGKIYITGGFNG---------HNCLNSCEVYDPEC-----NQWTLIEP---MRHRRSGVSCIAY-HECIYVIGGFN 659 (824)
Q Consensus 599 ~~~-~~~lyv~GG~~~---------~~~~~~v~~yd~~~-----~~W~~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~ 659 (824)
.+. +|.|||.||+.. ....++++.++|++ -.|+.+.+ -|.||+++++++. +++-|.|||..
T Consensus 238 ~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~ 317 (521)
T KOG1230|consen 238 SVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVC 317 (521)
T ss_pred EecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEeccee
Confidence 999 999999999842 24678999999998 67999865 4789999999887 56999999953
Q ss_pred C---------CCccceEEEEeCCCCCEEECC--CC--C----------------CCCcc------------eEEEEECCE
Q psy17309 660 G---------MSRMCNGEKYNPVTKTWSQVP--DM--Y----------------NPRSN------------FAIEVIDDM 698 (824)
Q Consensus 660 ~---------~~~~~~v~~yd~~~~~W~~~~--~~--p----------------~~r~~------------~~~~~~~~~ 698 (824)
. ....++++.||+..++|+... .. + .++.+ -+++..++.
T Consensus 318 D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~~~S~~~~~r~~~Kd~~k~~~~~~~G~~tkd~e~~~v~k~v~~~~d~ 397 (521)
T KOG1230|consen 318 DLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQGKKSPATSRRRSRKDQEKELQRPTVGPNTKDLEVQAVDKAVCPTTDS 397 (521)
T ss_pred cccccchhhhhhhhhhhhheecccchhhHhhhccCCCCccccccccccccccccCcccCCCcccccceecceeeeecCCc
Confidence 3 124789999999999998752 00 0 00111 112233455
Q ss_pred EEEEccCCCCceeeEEEEEECCCCcEEe-----ccCCCCCccceeEEEEcCccceeccccccccchhh
Q psy17309 699 IFAIGGFNGVTTIYHVECYDEKTDEWYE-----ATDMNIYRSALSACVIMGLPNVYDYIHQHRDSLME 761 (824)
Q Consensus 699 i~v~GG~~~~~~~~~v~~yd~~~~~W~~-----~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (824)
|++.-|..+.+.-. |+...+.=+. -.+-+.+|.....++..+.+|++++++..++.+..
T Consensus 398 l~i~v~v~~~g~~~----~p~s~~e~s~~~~~e~~~~~~pr~d~~~~v~~G~~~i~gGi~ee~d~q~t 461 (521)
T KOG1230|consen 398 LFIYVGVWEPGEAD----YPESEDEASREGDREPDEGEFPRMDDELSVKVGVLYIGGGIFEERDWQPT 461 (521)
T ss_pred eEEEeecCCCCCCC----CcccccccccccCCCCCCCCCccCCCccCcccceEEecCCCcccccccch
Confidence 55522222111000 0001111000 12346678888888888999999988887776544
No 26
>KOG4152|consensus
Probab=99.94 E-value=4.6e-26 Score=232.49 Aligned_cols=263 Identities=19% Similarity=0.309 Sum_probs=215.1
Q ss_pred cEEEcc--cCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEe---ccCCCCcceEEEEEECCEEEE
Q psy17309 486 RWVKID--QVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEI---APMNFKRCYVSTAVHQDVIYA 560 (824)
Q Consensus 486 ~W~~~~--~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~---~~~~~~r~~~~~~~~~~~iyv 560 (824)
+|..+. ..+.|.||.+|.++++...|.+|||-+. ...+.++.||..+++|..- .+.|.+...|+.+..+.+||+
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNE-GiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilv 96 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNE-GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILV 96 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCcc-cchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEE
Confidence 576653 4577889999999999999999999543 4578899999999999853 477888888999999999999
Q ss_pred EecccC-CCCCCeEEEEeCCCCcEEeec-------CCCcccCceEEEEECCEEEEEcccCCC---------CcCCceEEE
Q psy17309 561 MGGYNG-QRRQNSVEKYNYTENQWSLIA-------PMNVERSDASATTLQGKIYITGGFNGH---------NCLNSCEVY 623 (824)
Q Consensus 561 ~GG~~~-~~~~~~~~~yd~~t~~W~~~~-------~~p~~r~~~~~~~~~~~lyv~GG~~~~---------~~~~~v~~y 623 (824)
|||... ...+++++-+....-.|+++. +.|.||-+|+...++++-|+|||..+. .++++++..
T Consensus 97 FGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~l 176 (830)
T KOG4152|consen 97 FGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYIL 176 (830)
T ss_pred EccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEE
Confidence 999863 345677766665666677763 468899999999999999999997331 578999998
Q ss_pred eCCCC----eEEEc---CCCCCCCcceEEEEE------CCEEEEEecCCCCCccceEEEEeCCCCCEEECC---CCCCCC
Q psy17309 624 DPECN----QWTLI---EPMRHRRSGVSCIAY------HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP---DMYNPR 687 (824)
Q Consensus 624 d~~~~----~W~~~---~~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r 687 (824)
++.-+ .|... ..+|.+|..|.++.+ ..++||+||.++. ++.++|.+|+++.+|.+.. ..|.||
T Consensus 177 eL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl~W~kp~~~G~~PlPR 255 (830)
T KOG4152|consen 177 ELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTLTWNKPSLSGVAPLPR 255 (830)
T ss_pred EeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEecceeecccccccCCCCCCc
Confidence 87744 38776 478999999999988 3579999997653 5899999999999999873 468899
Q ss_pred cceEEEEECCEEEEEccCCC-----C---------ceeeEEEEEECCCCcEEec-------cCCCCCccceeEEEEcCcc
Q psy17309 688 SNFAIEVIDDMIFAIGGFNG-----V---------TTIYHVECYDEKTDEWYEA-------TDMNIYRSALSACVIMGLP 746 (824)
Q Consensus 688 ~~~~~~~~~~~i~v~GG~~~-----~---------~~~~~v~~yd~~~~~W~~~-------~~~p~~r~~~~~~~~~~~~ 746 (824)
+-|+++.+++|+|||||+-. . ...+++-++++++..|..+ ...|.+|.+|+++.+++++
T Consensus 256 SLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRl 335 (830)
T KOG4152|consen 256 SLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRL 335 (830)
T ss_pred ccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEE
Confidence 99999999999999999721 0 1345677899999999876 2378999999999999999
Q ss_pred ceec
Q psy17309 747 NVYD 750 (824)
Q Consensus 747 ~~~~ 750 (824)
|+..
T Consensus 336 YiWS 339 (830)
T KOG4152|consen 336 YIWS 339 (830)
T ss_pred EEEe
Confidence 9873
No 27
>KOG4350|consensus
Probab=99.78 E-value=1e-19 Score=181.40 Aligned_cols=197 Identities=14% Similarity=0.177 Sum_probs=182.0
Q ss_pred cccCcceeeeeeecceEEEE-cccccccccceeEEeeecccchhhhheeecccceecCH---hhHHHHHHHHhhcChHhH
Q psy17309 217 MNFKRCYVSTAVHQDVIYAM-GGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITE---DNVASLLLATDFFCMSKA 292 (824)
Q Consensus 217 ~~~~r~~~~~~~~~~~~~~~-~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~---~~v~~ll~~a~~~~i~~l 292 (824)
..+|.|+..+++.+.+|+++ .|+|.|+.|..|.+++-..++|+.+|+|||||++.++. +...+.|.+|+.|++.+|
T Consensus 54 ~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~LslAh~Ygf~~L 133 (620)
T KOG4350|consen 54 TRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEEDILLDYLSLAHRYGFIQL 133 (620)
T ss_pred cccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchHHHHHHHHHHHHhcCcHHH
Confidence 45788999999999999999 89999999999999999999999999999999998754 678999999999999999
Q ss_pred HHHHHHHHhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCCHHHHHHHhcCCCcccCChHHHH
Q psy17309 293 QDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVW 372 (824)
Q Consensus 293 ~~~c~~~l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~ll~~d~L~v~~E~~v~ 372 (824)
..+..+||++-+..+|+..++..|..|++++|.+.|..|+-+|-.++. ..+.|..|+.+.|.++|..|... ..|.+||
T Consensus 134 e~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL-~~~sFn~LSk~sL~e~l~RDsFf-ApE~~IF 211 (620)
T KOG4350|consen 134 ETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLL-EDPSFNRLSKDSLKELLARDSFF-APELKIF 211 (620)
T ss_pred HHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhh-cCcchhhhhHHHHHHHHhhhccc-chHHHHH
Confidence 999999999999999999999999999999999999999999999999 78899999999999999988764 5699999
Q ss_pred HHHHHHHhcCccchHHHHHHhhhhccCCCCChHHHHhhccCCcccc
Q psy17309 373 ELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQ 418 (824)
Q Consensus 373 ~av~~W~~~~~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~~~~~~~ 418 (824)
.|+.+|-++|+ ....+.|++.||+|+|+...|+..+....++.
T Consensus 212 lAv~~W~~~Ns---ke~~k~~~~~VRLPLm~lteLLnvVRPsGlls 254 (620)
T KOG4350|consen 212 LAVRSWHQNNS---KEASKVLLELVRLPLMTLTELLNVVRPSGLLS 254 (620)
T ss_pred HHHHHHHhcCc---hhhHHHHHHHHhhhhccHHHHHhccCcccCcC
Confidence 99999999998 45667899999999999999999888766553
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.77 E-value=3.9e-17 Score=162.63 Aligned_cols=261 Identities=20% Similarity=0.221 Sum_probs=198.8
Q ss_pred cCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCC--CceEEeccCC-CCcceEEEEEECCEEEEEecccCC-
Q psy17309 492 QVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVT--KVWKEIAPMN-FKRCYVSTAVHQDVIYAMGGYNGQ- 567 (824)
Q Consensus 492 ~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~--~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~- 567 (824)
.++.|.+-.+-+.+.+++.+||-=|..+ .+.+..|... ..|++++..| .+|....+++++++||+|||....
T Consensus 30 lPdlPvg~KnG~Ga~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~ 105 (381)
T COG3055 30 LPDLPVGFKNGAGALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSV 105 (381)
T ss_pred CCCCCccccccccceecceEEEEeccCC----ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCC
Confidence 4556666666677788899999877444 4567777764 5699999887 578899999999999999998632
Q ss_pred ----CCCCeEEEEeCCCCcEEeec-CCCcccCceEEEEECC-EEEEEcccCCC---------------------------
Q psy17309 568 ----RRQNSVEKYNYTENQWSLIA-PMNVERSDASATTLQG-KIYITGGFNGH--------------------------- 614 (824)
Q Consensus 568 ----~~~~~~~~yd~~t~~W~~~~-~~p~~r~~~~~~~~~~-~lyv~GG~~~~--------------------------- 614 (824)
...+++++|||.+++|+++. ..|....++.++.+++ +||++||++..
T Consensus 106 ~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf 185 (381)
T COG3055 106 SSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYF 185 (381)
T ss_pred CCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHh
Confidence 23689999999999999985 4677888999999987 99999996421
Q ss_pred -------CcCCceEEEeCCCCeEEEcCCCCC-CCcceEEEEECCEEEEEecCCCC-CccceEEEEeCC--CCCEEECCCC
Q psy17309 615 -------NCLNSCEVYDPECNQWTLIEPMRH-RRSGVSCIAYHECIYVIGGFNGM-SRMCNGEKYNPV--TKTWSQVPDM 683 (824)
Q Consensus 615 -------~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~--~~~W~~~~~~ 683 (824)
.....+..|||.+++|+.+...|. ++++.+.+.-++++.++-|.-.. -+...+.+++.. .-+|..++++
T Consensus 186 ~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~l 265 (381)
T COG3055 186 DKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDL 265 (381)
T ss_pred CCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCC
Confidence 145678899999999999986664 56665555557878888885433 345667777765 4589999888
Q ss_pred CCCCcce-------EEEEECCEEEEEccCCCC-------------------ceeeEEEEEECCCCcEEeccCCCCCccce
Q psy17309 684 YNPRSNF-------AIEVIDDMIFAIGGFNGV-------------------TTIYHVECYDEKTDEWYEATDMNIYRSAL 737 (824)
Q Consensus 684 p~~r~~~-------~~~~~~~~i~v~GG~~~~-------------------~~~~~v~~yd~~~~~W~~~~~~p~~r~~~ 737 (824)
|.+...- -.--.++.+.+.||.+-. ...++|+++| ++.|+.++.||.++.+.
T Consensus 266 p~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~YG 343 (381)
T COG3055 266 PAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLAYG 343 (381)
T ss_pred CCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCccce
Confidence 7654332 112347899999997521 1346788888 89999999999999998
Q ss_pred eEEEEcCccceeccccccccc
Q psy17309 738 SACVIMGLPNVYDYIHQHRDS 758 (824)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~ 758 (824)
.++..++.+++.++....+..
T Consensus 344 ~s~~~nn~vl~IGGE~~~Gka 364 (381)
T COG3055 344 VSLSYNNKVLLIGGETSGGKA 364 (381)
T ss_pred EEEecCCcEEEEccccCCCee
Confidence 888999999998777666553
No 29
>KOG2075|consensus
Probab=99.71 E-value=1.7e-17 Score=170.62 Aligned_cols=204 Identities=18% Similarity=0.223 Sum_probs=181.9
Q ss_pred ccccCcceeeeeeecceEEEE-cccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHH
Q psy17309 216 PMNFKRCYVSTAVHQDVIYAM-GGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQD 294 (824)
Q Consensus 216 ~~~~~r~~~~~~~~~~~~~~~-~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~ 294 (824)
.+..|.|...+++.+++|.+| +|...++...+|+++++++.+|..+|+|||++++.+..+|++.+|.+|+.|.++.|.+
T Consensus 128 ~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer 207 (521)
T KOG2075|consen 128 SQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKLAADTVITTLYAAKKYLVPALER 207 (521)
T ss_pred ccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHH
Confidence 345789999999999999999 7777777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCcchHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCC--HHHHHHHhcCCCcccCChHHH
Q psy17309 295 LCCDFIKRLTTPRNCFGIL-LFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFIS--EQELEEIISSDELNVKSEETV 371 (824)
Q Consensus 295 ~c~~~l~~~l~~~N~~~i~-~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~--~~~l~~ll~~d~L~v~~E~~v 371 (824)
.|.+||++.+-+.|.+..+ +-|.+++-++|.+.|.+-|..+|.+.. +.|.|.+.. .+.++++|+++.|++. |..+
T Consensus 208 ~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al-~~EGf~did~~~dt~~evl~r~~l~~~-e~~l 285 (521)
T KOG2075|consen 208 QCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDAL-TPEGFCDIDSTRDTYEEVLRRDTLEAR-EFRL 285 (521)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhh-CccceeehhhHHHHHHHHHhhcccchh-HHHH
Confidence 9999999999888865555 449999999999999999999999988 788998888 9999999999999987 9999
Q ss_pred HHHHHHHHhcC---------ccchHHHHHHhhhhccCCCCChHHHHhhccCCccccCCc
Q psy17309 372 WELIIRWIDYD---------PENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTP 421 (824)
Q Consensus 372 ~~av~~W~~~~---------~~~r~~~~~~ll~~vr~~~~~~~~l~~~~~~~~~~~~~~ 421 (824)
|+|+++|.+.. .+.+.+.+...+..+||++|..+.+...+....+....+
T Consensus 286 feA~lkw~~~e~~rs~~~~~~~~~~~vl~~~l~lirfp~m~~Eefa~~~e~sgIl~d~e 344 (521)
T KOG2075|consen 286 FEAALKWAEAECQRSGGPVNGQNKRKVLGRALSLIRFPFMNIEEFARGVEQSGILTDRE 344 (521)
T ss_pred HHHHHhhccCcchhhcCCCCccchhhhhhheeeeecccccchhhhccCccccCCccccc
Confidence 99999998643 456678899999999999999998876666655554433
No 30
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.67 E-value=9.2e-15 Score=145.84 Aligned_cols=233 Identities=19% Similarity=0.237 Sum_probs=171.8
Q ss_pred CCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCC-----CcccceEEEEECCCCceEEeccC-CCCcceEEEEEEC
Q psy17309 482 TRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDG-----NEYYNSCRCFNAVTKVWKEIAPM-NFKRCYVSTAVHQ 555 (824)
Q Consensus 482 ~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~-----~~~~~~~~~yd~~~~~W~~~~~~-~~~r~~~~~~~~~ 555 (824)
-....|..+..- +-.+|....+++++++||+|||... .+..+++|+|||.+++|+.+... |....+++++.++
T Consensus 67 ~~~k~W~~~a~F-pG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~ 145 (381)
T COG3055 67 KPGKGWTKIADF-PGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLN 145 (381)
T ss_pred cCCCCceEcccC-CCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecC
Confidence 345689986333 2347999999999999999999742 23578999999999999988754 6667788888888
Q ss_pred C-EEEEEecccC----------------------------------CCCCCeEEEEeCCCCcEEeecCCC-cccCceEEE
Q psy17309 556 D-VIYAMGGYNG----------------------------------QRRQNSVEKYNYTENQWSLIAPMN-VERSDASAT 599 (824)
Q Consensus 556 ~-~iyv~GG~~~----------------------------------~~~~~~~~~yd~~t~~W~~~~~~p-~~r~~~~~~ 599 (824)
+ +||++||.+. ......+..|+|.+++|+.+...| .++++.+.+
T Consensus 146 ~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~ 225 (381)
T COG3055 146 GTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVV 225 (381)
T ss_pred CceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCccee
Confidence 7 9999999631 012467899999999999998776 577776666
Q ss_pred EECCEEEEEcccCC-CCcCCceEEEeCC--CCeEEEcCCCCCCCcce----E---EEEECCEEEEEecCCCC--------
Q psy17309 600 TLQGKIYITGGFNG-HNCLNSCEVYDPE--CNQWTLIEPMRHRRSGV----S---CIAYHECIYVIGGFNGM-------- 661 (824)
Q Consensus 600 ~~~~~lyv~GG~~~-~~~~~~v~~yd~~--~~~W~~~~~~p~~r~~~----~---~~~~~~~iyv~GG~~~~-------- 661 (824)
.-++++.++-|.-. .-+...+.+++.. .-+|..++++|.+...- + .-..++.+.+.||.+-.
T Consensus 226 ~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~ 305 (381)
T COG3055 226 IKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKN 305 (381)
T ss_pred ecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHh
Confidence 66888988888643 2334556666654 55799998777653221 1 22347888899984211
Q ss_pred -----------CccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCCc-eeeEEEEE
Q psy17309 662 -----------SRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVT-TIYHVECY 717 (824)
Q Consensus 662 -----------~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~v~~y 717 (824)
....+|+.+| .+.|+.+..||.++....++..+++||++||.+... .+.++...
T Consensus 306 Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l 371 (381)
T COG3055 306 GKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLAYGVSLSYNNKVLLIGGETSGGKATTRVYSL 371 (381)
T ss_pred cccccccchhhhhhceEEEEc--CCceeeecccCCCccceEEEecCCcEEEEccccCCCeeeeeEEEE
Confidence 1245788888 899999999999999888899999999999987554 44444443
No 31
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=99.65 E-value=1.4e-16 Score=139.62 Aligned_cols=102 Identities=36% Similarity=0.630 Sum_probs=93.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCCHHHHHHHhcCCCcccCChHHHHHHHHHHHhcCccchHH
Q psy17309 309 CFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPENRKK 388 (824)
Q Consensus 309 ~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~ll~~d~L~v~~E~~v~~av~~W~~~~~~~r~~ 388 (824)
|++++.+|..|++.+|.++|.+|+..||.++. ++++|.+||.+++..+|+++.|++.+|.+||+++++|+++++..|.+
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~-~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~~r~~ 79 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVS-KSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPENREE 79 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHT-TSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHHHHTT
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHc-cchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHHHHHH
Confidence 89999999999999999999999999999999 67899999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccCCCCChHHHHhhc
Q psy17309 389 HIVSLMKNIRLGLLETEFFREKV 411 (824)
Q Consensus 389 ~~~~ll~~vr~~~~~~~~l~~~~ 411 (824)
++.+|+++|||++++++++.+.+
T Consensus 80 ~~~~Ll~~iR~~~l~~~~L~~~v 102 (103)
T PF07707_consen 80 HLKELLSCIRFPLLSPEELQNVV 102 (103)
T ss_dssp THHHHHCCCHHHCT-HHHHHHCC
T ss_pred HHHHHHHhCCcccCCHHHHHHHH
Confidence 99999999999999999987765
No 32
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=99.54 E-value=4e-14 Score=123.61 Aligned_cols=99 Identities=41% Similarity=0.722 Sum_probs=92.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCCHHHHHHHhcCCCcccCChHHHHHHHHHHHhcCccchHH
Q psy17309 309 CFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPENRKK 388 (824)
Q Consensus 309 ~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~ll~~d~L~v~~E~~v~~av~~W~~~~~~~r~~ 388 (824)
|+.++.+|+.|++..|.+.|.+|+.+||.++. ++++|.+|+.+++..+|++|.|++.+|+.+|+++++|++++...|.
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~-~~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~~~~~- 78 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVA-QSEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDPERRR- 78 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHh-cCcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCCHHHHH-
Confidence 67899999999999999999999999999998 5699999999999999999999998999999999999999987666
Q ss_pred HHHHhhhhccCCCCChHHHHh
Q psy17309 389 HIVSLMKNIRLGLLETEFFRE 409 (824)
Q Consensus 389 ~~~~ll~~vr~~~~~~~~l~~ 409 (824)
++..++++|||++++++.+..
T Consensus 79 ~~~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 79 HLPELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred HHHHHHHhCCCCCCCHHHHHh
Confidence 899999999999999987654
No 33
>KOG2437|consensus
Probab=99.41 E-value=1.1e-13 Score=142.66 Aligned_cols=233 Identities=18% Similarity=0.266 Sum_probs=167.6
Q ss_pred CCCCCceeEEEEEC--CEEEEEeecCCCcccceEEEEECCCCceEEec---cCCCCcceEEEEEECC--EEEEEecccCC
Q psy17309 495 PMGPRAYHGTAVIG--YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIA---PMNFKRCYVSTAVHQD--VIYAMGGYNGQ 567 (824)
Q Consensus 495 ~~~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~--~iyv~GG~~~~ 567 (824)
.|..|.+|.++... +.||+.||.+|.+.+.++|.|+...+.|..+. ..|-.|..|.++..-. ++|+.|-+-+.
T Consensus 257 ~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~s 336 (723)
T KOG2437|consen 257 RPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDS 336 (723)
T ss_pred CccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhcccc
Confidence 46679999999984 49999999999999999999999999999765 4678899999988754 99999976422
Q ss_pred ------CCCCeEEEEeCCCCcEEeec------CCCcccCceEEEEECCE--EEEEcccCCC---CcCCceEEEeCCCCeE
Q psy17309 568 ------RRQNSVEKYNYTENQWSLIA------PMNVERSDASATTLQGK--IYITGGFNGH---NCLNSCEVYDPECNQW 630 (824)
Q Consensus 568 ------~~~~~~~~yd~~t~~W~~~~------~~p~~r~~~~~~~~~~~--lyv~GG~~~~---~~~~~v~~yd~~~~~W 630 (824)
..-+++|+||..++.|..+. .-|.....|.+++.+++ |||+||..-. ....-++.||.....|
T Consensus 337 S~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w 416 (723)
T KOG2437|consen 337 SVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTW 416 (723)
T ss_pred ccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccH
Confidence 23468999999999998773 35778899999999877 9999997432 3456789999999999
Q ss_pred EEcCC----------CCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECC-------CCCCCCcceE
Q psy17309 631 TLIEP----------MRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP-------DMYNPRSNFA 691 (824)
Q Consensus 631 ~~~~~----------~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-------~~p~~r~~~~ 691 (824)
..+.. ....|.+|.+-.+ +..+|++||......++-...||.....=..+. ++...+....
T Consensus 417 ~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~q 496 (723)
T KOG2437|consen 417 KLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFTQ 496 (723)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccccchhhhccCcCccccCCCcchhh
Confidence 87741 1234666665444 688999999776666666667765433222111 1111111111
Q ss_pred EEEE---CCEEEEEccCCC------CceeeEEEEEECCCCcEEec
Q psy17309 692 IEVI---DDMIFAIGGFNG------VTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 692 ~~~~---~~~i~v~GG~~~------~~~~~~v~~yd~~~~~W~~~ 727 (824)
-+.. ...|.+.-|... .+..++.|+|+..++.|..+
T Consensus 497 Rs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI 541 (723)
T KOG2437|consen 497 RATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCI 541 (723)
T ss_pred hcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhH
Confidence 1112 456777666542 23567899999999999654
No 34
>KOG2437|consensus
Probab=99.40 E-value=3.4e-13 Score=138.98 Aligned_cols=163 Identities=18% Similarity=0.341 Sum_probs=129.7
Q ss_pred cEEEEEccCCCCCCCcceEEEECCCCcEEeeccCC-CCCCcCeEEEEEECC--EEEEEccCCCC------cccceEEEEE
Q psy17309 46 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVD-PMGPRAYHGTAVIGY--NIYVIGGFDGN------EYYNSCRCFN 116 (824)
Q Consensus 46 ~~i~~~GG~~~~~~~~~~~~~d~~~~~W~~~~~~~-~p~~R~~h~~~~~~~--~~yv~GG~~~~------~~~~~~~~~~ 116 (824)
++||+.||+++...+.|.|.|+...+.|..+..-+ .|..|+.|-++..-. ++|+.|-|-+. ...+|+|+||
T Consensus 273 ~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FD 352 (723)
T KOG2437|consen 273 ECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFD 352 (723)
T ss_pred cEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEe
Confidence 59999999999999999999999999999997766 789999999998755 89999996433 3568999999
Q ss_pred ccCCceeEecc------cCCCcceeEEEEECCE--EEEEcCcCC--C-CCCCcEEEEECCCCeEEEecc-----------
Q psy17309 117 AVTKVWKEIAP------MNFKRCYVSTAVHQDV--IYAMGGYNG--Q-RRQNSVEKYNYTENQWSLIAP----------- 174 (824)
Q Consensus 117 ~~~~~W~~~~~------~~~~R~~~~~~~~~~~--lyv~GG~~~--~-~~~~~~~~yd~~~~~W~~~~~----------- 174 (824)
..++.|.-+.- =|..-+.|.|++.+++ ||||||+.- + ..+.-++.||.....|+.++.
T Consensus 353 i~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~ 432 (723)
T KOG2437|consen 353 IDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVED 432 (723)
T ss_pred cCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhH
Confidence 99999998842 2344789999999887 999999843 2 357899999999999988743
Q ss_pred ----ccceee--ccCCeEEEEcccCCceeeceEEEEECCC
Q psy17309 175 ----MNCMIQ--NVTYNIYVIGGFDGNEYYNSCRCFNAVT 208 (824)
Q Consensus 175 ----~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~ 208 (824)
|++.+. ..++.+|+|||.....-++=..+|++..
T Consensus 433 ~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~ 472 (723)
T KOG2437|consen 433 IQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDS 472 (723)
T ss_pred HHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceecc
Confidence 222111 3357899999997765555555655544
No 35
>PF13964 Kelch_6: Kelch motif
Probab=99.37 E-value=9.7e-13 Score=97.47 Aligned_cols=49 Identities=37% Similarity=0.781 Sum_probs=47.0
Q ss_pred CcCeEEEEEECCEEEEEccCCC-CcccceEEEEEccCCceeEecccCCCc
Q psy17309 84 PRAYHGTAVIGYNIYVIGGFDG-NEYYNSCRCFNAVTKVWKEIAPMNFKR 132 (824)
Q Consensus 84 ~R~~h~~~~~~~~~yv~GG~~~-~~~~~~~~~~~~~~~~W~~~~~~~~~R 132 (824)
||.+|++++++++||||||..+ ...++++++||+.|++|+++++||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 6999999999999999999888 789999999999999999999999998
No 36
>KOG4682|consensus
Probab=99.32 E-value=2.9e-12 Score=129.02 Aligned_cols=151 Identities=14% Similarity=0.230 Sum_probs=136.7
Q ss_pred eecceEEEE-cccccccccceeEEe----eecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHHHHHHhh
Q psy17309 228 VHQDVIYAM-GGYNGQRRQNSVEKY----NYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKR 302 (824)
Q Consensus 228 ~~~~~~~~~-~g~~~e~~~~~i~l~----~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c~~~l~~ 302 (824)
..+.+|++| .|.-.|+.++.|.+. .++..++...+.-+|.+++.|..+.+..++.+|.++|++.|.+.|.+-|..
T Consensus 89 ~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~dv~gvlAaA~~lqldgl~qrC~evMie 168 (488)
T KOG4682|consen 89 FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIE 168 (488)
T ss_pred eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455678888 566677777776654 667788999999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCCHHHHHHHhcCCCcccCC-hHHHHHHHHHHH
Q psy17309 303 LTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKS-EETVWELIIRWI 379 (824)
Q Consensus 303 ~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~ll~~d~L~v~~-E~~v~~av~~W~ 379 (824)
.|.++|....+..|.+|++..+++.|.+++..||..+- ...-+.+++.+.+..+|.+.+|.+-+ |-++|..+..|+
T Consensus 169 ~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~-~~q~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~Wm 245 (488)
T KOG4682|consen 169 TLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQ-NVQLLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKWM 245 (488)
T ss_pred hcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhh-hHHHHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHH
Confidence 99999999999999999999999999999999999887 44478889999999999999998765 999999999997
No 37
>PF13964 Kelch_6: Kelch motif
Probab=99.20 E-value=3.1e-11 Score=89.37 Aligned_cols=48 Identities=33% Similarity=0.591 Sum_probs=45.1
Q ss_pred CcceeEEEEECCEEEEEcCcCC-CCCCCcEEEEECCCCeEEEeccccce
Q psy17309 131 KRCYVSTAVHQDVIYAMGGYNG-QRRQNSVEKYNYTENQWSLIAPMNCM 178 (824)
Q Consensus 131 ~R~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~~~~ 178 (824)
||++|++++++++||||||..+ ....+++++||+++++|+++++|+.+
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence 7999999999999999999988 67799999999999999999999865
No 38
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.15 E-value=7.2e-11 Score=86.80 Aligned_cols=47 Identities=30% Similarity=0.560 Sum_probs=44.0
Q ss_pred CCEEEEEccCC--CCcccceEEEEEccCCceeEecccCCCcceeEEEEE
Q psy17309 94 GYNIYVIGGFD--GNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH 140 (824)
Q Consensus 94 ~~~~yv~GG~~--~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~ 140 (824)
|++||||||.+ +...+||+|+||+.+++|++++++|.||++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 68999999988 678999999999999999999999999999999975
No 39
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.09 E-value=1.3e-10 Score=84.91 Aligned_cols=46 Identities=46% Similarity=0.919 Sum_probs=43.2
Q ss_pred CcCeEEEEEECCEEEEEccCCC-CcccceEEEEEccCCceeEecccC
Q psy17309 84 PRAYHGTAVIGYNIYVIGGFDG-NEYYNSCRCFNAVTKVWKEIAPMN 129 (824)
Q Consensus 84 ~R~~h~~~~~~~~~yv~GG~~~-~~~~~~~~~~~~~~~~W~~~~~~~ 129 (824)
||.+|++++++++|||+||.++ ...++++++||+.+++|+++++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 6999999999999999999988 789999999999999999999886
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=99.08 E-value=2.5e-10 Score=83.93 Aligned_cols=46 Identities=37% Similarity=0.746 Sum_probs=42.6
Q ss_pred CcCeEEEEEECCEEEEEccC---CCCcccceEEEEEccCCceeEecccC
Q psy17309 84 PRAYHGTAVIGYNIYVIGGF---DGNEYYNSCRCFNAVTKVWKEIAPMN 129 (824)
Q Consensus 84 ~R~~h~~~~~~~~~yv~GG~---~~~~~~~~~~~~~~~~~~W~~~~~~~ 129 (824)
||.+|++++++++||||||+ ......+|+++||+.+++|+++++|+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 69999999999999999999 55678999999999999999998875
No 41
>KOG4591|consensus
Probab=99.07 E-value=2.2e-10 Score=104.26 Aligned_cols=141 Identities=13% Similarity=0.195 Sum_probs=116.3
Q ss_pred cCcceeeeeeecceEEEEcccccccccceeEEeeecccchhhhheeecccceecCHhh--HHHHHHHHhhcChHhHHHHH
Q psy17309 219 FKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDN--VASLLLATDFFCMSKAQDLC 296 (824)
Q Consensus 219 ~~r~~~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~--v~~ll~~a~~~~i~~l~~~c 296 (824)
.+.|.+.+++.++......| +.....+..+.+.++++|...+++|||+++++..+. ..++++.|..||++-|++.|
T Consensus 81 i~AHKfVLAARsD~WkfaN~--~dekse~~~~dDad~Ea~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C 158 (280)
T KOG4591|consen 81 IPAHKFVLAARSDFWKFANG--GDEKSEELDLDDADFEAFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERC 158 (280)
T ss_pred CchhhhhhhhhcchhhhccC--CCcchhhhcccccCHHHHHHhheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443332211 122345677889999999999999999999987755 68999999999999999999
Q ss_pred HHHHhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCCHHHHHHHhcCCCc
Q psy17309 297 CDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDEL 363 (824)
Q Consensus 297 ~~~l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~ll~~d~L 363 (824)
++-+-..+.++||+.++.+|+..+...|...|.+.|..+..++- .++|.+++...|-++++...-
T Consensus 159 ~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~--~a~FaqMs~aLLYklId~kTe 223 (280)
T KOG4591|consen 159 EKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLG--KADFAQMSAALLYKLIDGKTE 223 (280)
T ss_pred HHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccC--hHHHHhccHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999998875 469999999999999977553
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=99.02 E-value=2.2e-10 Score=84.46 Aligned_cols=46 Identities=33% Similarity=0.556 Sum_probs=31.7
Q ss_pred CcCeEEEEEE-CCEEEEEccCCCC-cccceEEEEEccCCceeEecccC
Q psy17309 84 PRAYHGTAVI-GYNIYVIGGFDGN-EYYNSCRCFNAVTKVWKEIAPMN 129 (824)
Q Consensus 84 ~R~~h~~~~~-~~~~yv~GG~~~~-~~~~~~~~~~~~~~~W~~~~~~~ 129 (824)
||.+|+++.+ +++||||||.+.. ..++|+|+||+.+++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 6999999999 5899999998776 69999999999999999998876
No 43
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.02 E-value=3.3e-10 Score=82.77 Aligned_cols=46 Identities=37% Similarity=0.681 Sum_probs=42.7
Q ss_pred CcceeEEEEECCEEEEEcCcCC-CCCCCcEEEEECCCCeEEEecccc
Q psy17309 131 KRCYVSTAVHQDVIYAMGGYNG-QRRQNSVEKYNYTENQWSLIAPMN 176 (824)
Q Consensus 131 ~R~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~~ 176 (824)
||++|++++++++|||+||.++ ....+++++||+.+++|+.+++|+
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 6999999999999999999998 667899999999999999999985
No 44
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.95 E-value=1.9e-09 Score=79.22 Aligned_cols=46 Identities=37% Similarity=0.635 Sum_probs=41.9
Q ss_pred CcceeEEEEECCEEEEEcCc---CCCCCCCcEEEEECCCCeEEEecccc
Q psy17309 131 KRCYVSTAVHQDVIYAMGGY---NGQRRQNSVEKYNYTENQWSLIAPMN 176 (824)
Q Consensus 131 ~R~~~~~~~~~~~lyv~GG~---~~~~~~~~~~~yd~~~~~W~~~~~~~ 176 (824)
||+.|++++++++||||||+ ......+++++||+++++|+.+++|+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 69999999999999999999 44566899999999999999999875
No 45
>PF13854 Kelch_5: Kelch motif
Probab=98.92 E-value=2.3e-09 Score=75.55 Aligned_cols=40 Identities=33% Similarity=0.580 Sum_probs=36.2
Q ss_pred CCCCcCeEEEEEECCEEEEEccCC--CCcccceEEEEEccCC
Q psy17309 81 PMGPRAYHGTAVIGYNIYVIGGFD--GNEYYNSCRCFNAVTK 120 (824)
Q Consensus 81 ~p~~R~~h~~~~~~~~~yv~GG~~--~~~~~~~~~~~~~~~~ 120 (824)
+|.||.+|++++++++||||||.+ ....+||+|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 479999999999999999999988 4679999999999863
No 46
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.91 E-value=1.1e-09 Score=80.67 Aligned_cols=47 Identities=21% Similarity=0.390 Sum_probs=31.7
Q ss_pred CcceeEEEEE-CCEEEEEcCcCCC-CCCCcEEEEECCCCeEEEeccccc
Q psy17309 131 KRCYVSTAVH-QDVIYAMGGYNGQ-RRQNSVEKYNYTENQWSLIAPMNC 177 (824)
Q Consensus 131 ~R~~~~~~~~-~~~lyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~~~ 177 (824)
||++|+++.+ +++||||||.+.. ..++++|+||+++++|++++++|+
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 7999999999 5899999999886 589999999999999999988873
No 47
>PLN02772 guanylate kinase
Probab=98.89 E-value=1.2e-08 Score=107.09 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=87.0
Q ss_pred CCCcCeEEEEEECCEEEEEccCCCCc-ccceEEEEEccCCceeEe---cccCCCcceeEEEEEC-CEEEEEcCcCCCCCC
Q psy17309 82 MGPRAYHGTAVIGYNIYVIGGFDGNE-YYNSCRCFNAVTKVWKEI---APMNFKRCYVSTAVHQ-DVIYAMGGYNGQRRQ 156 (824)
Q Consensus 82 p~~R~~h~~~~~~~~~yv~GG~~~~~-~~~~~~~~~~~~~~W~~~---~~~~~~R~~~~~~~~~-~~lyv~GG~~~~~~~ 156 (824)
+.||..|+++.+++++|||||.++.. ..+++++||..|++|... +..|.||.+|++++++ ++|+|+++..+..
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~-- 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD-- 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc--
Confidence 56899999999999999999977664 889999999999999876 5778899999999994 6999999865543
Q ss_pred CcEEEEECCCCe--------EEEeccccceeeccCCeEEEEcccCCc
Q psy17309 157 NSVEKYNYTENQ--------WSLIAPMNCMIQNVTYNIYVIGGFDGN 195 (824)
Q Consensus 157 ~~~~~yd~~~~~--------W~~~~~~~~~~~~~~~~i~v~GG~~~~ 195 (824)
.++|.....|.- =+.+..++.+......+++|+-|-++.
T Consensus 100 ~~~w~l~~~t~~~~~~~~~~~~eV~~~~~~~~~~~~k~iVlsGPSGv 146 (398)
T PLN02772 100 DSIWFLEVDTPFVREQKKLLGTEVVAWSKGVRGNAEKPIVISGPSGV 146 (398)
T ss_pred cceEEEEcCCHHHHhhcccccceeeecccCCCCCCCcEEEEECCCCC
Confidence 678888777641 133444444344445678888777664
No 48
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.79 E-value=1.3e-08 Score=74.69 Aligned_cols=47 Identities=30% Similarity=0.547 Sum_probs=43.1
Q ss_pred CCEEEEEccCC--CCceeeEEEEEECCCCcEEeccCCCCCccceeEEEE
Q psy17309 696 DDMIFAIGGFN--GVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVI 742 (824)
Q Consensus 696 ~~~i~v~GG~~--~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 742 (824)
+++|||+||.+ ....++++|+||+++++|++++++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 68999999998 566889999999999999999999999999999863
No 49
>smart00612 Kelch Kelch domain.
Probab=98.76 E-value=9.3e-09 Score=75.14 Aligned_cols=47 Identities=32% Similarity=0.590 Sum_probs=43.5
Q ss_pred EEEEEccCCCCcccceEEEEEccCCceeEecccCCCcceeEEEEECC
Q psy17309 96 NIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD 142 (824)
Q Consensus 96 ~~yv~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~~~ 142 (824)
+|||+||.++...++++++||+.+++|+++++|+.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998877789999999999999999999999999999998874
No 50
>smart00612 Kelch Kelch domain.
Probab=98.61 E-value=6.5e-08 Score=70.60 Aligned_cols=47 Identities=34% Similarity=0.709 Sum_probs=42.6
Q ss_pred EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECC
Q psy17309 557 VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQG 603 (824)
Q Consensus 557 ~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~ 603 (824)
+||++||..+...++++++||+.+++|+.+++||.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998766678999999999999999999999999999988864
No 51
>PF13854 Kelch_5: Kelch motif
Probab=98.56 E-value=1.3e-07 Score=66.65 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=35.7
Q ss_pred cCCCcceeEEEEECCEEEEEcCcCC--CCCCCcEEEEECCCC
Q psy17309 128 MNFKRCYVSTAVHQDVIYAMGGYNG--QRRQNSVEKYNYTEN 167 (824)
Q Consensus 128 ~~~~R~~~~~~~~~~~lyv~GG~~~--~~~~~~~~~yd~~~~ 167 (824)
+|.+|.+|++++++++||||||.++ ...++|+|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4789999999999999999999994 566899999999863
No 52
>PLN02772 guanylate kinase
Probab=98.49 E-value=5.5e-07 Score=94.87 Aligned_cols=73 Identities=21% Similarity=0.197 Sum_probs=62.8
Q ss_pred CcEEEEEccCCCCC-CCcceEEEECCCCcEEeeccCC-CCCCcCeEEEEEE-CCEEEEEccCCCCcccceEEEEEccC
Q psy17309 45 HEILFAIGGWSGGS-PTDFVETYDTRADRWVKIDQVD-PMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVT 119 (824)
Q Consensus 45 ~~~i~~~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~~-~p~~R~~h~~~~~-~~~~yv~GG~~~~~~~~~~~~~~~~~ 119 (824)
.+.+|||||.+... .+++|++||+.+++|...+..| +|.||.||+++++ +++|+|+++..+.. .+.|.+...|
T Consensus 34 gdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~--~~~w~l~~~t 109 (398)
T PLN02772 34 GDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD--DSIWFLEVDT 109 (398)
T ss_pred CCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc--cceEEEEcCC
Confidence 47999999987765 6899999999999999998888 8999999999999 56899999865553 6788887766
No 53
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.45 E-value=3.1e-06 Score=84.11 Aligned_cols=148 Identities=16% Similarity=0.272 Sum_probs=100.8
Q ss_pred EEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCC----CcEEeec-CCCcccCceEEEE
Q psy17309 526 CRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTE----NQWSLIA-PMNVERSDASATT 600 (824)
Q Consensus 526 ~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t----~~W~~~~-~~p~~r~~~~~~~ 600 (824)
...||+.+++++.+......-+...+..-+|.+.+.||..+ ....+..|+|.+ ..|.+.+ .|..+|...++..
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~--G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDND--GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCc--cccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 45799999999987654322222233445899999999754 235677888875 6798775 5999999999998
Q ss_pred E-CCEEEEEcccCCCCcCCceEEEeCCC-----CeEEEcCC----CCCCCcceEEEEECCEEEEEecCCCCCccceEEEE
Q psy17309 601 L-QGKIYITGGFNGHNCLNSCEVYDPEC-----NQWTLIEP----MRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKY 670 (824)
Q Consensus 601 ~-~~~lyv~GG~~~~~~~~~v~~yd~~~-----~~W~~~~~----~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y 670 (824)
+ +|+++|+||... .+.|.+.+.. ..|..+.. .+..-+-+..+.-+|+||+++.. .-.+|
T Consensus 126 L~DG~vlIvGG~~~----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-------~s~i~ 194 (243)
T PF07250_consen 126 LPDGRVLIVGGSNN----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-------GSIIY 194 (243)
T ss_pred CCCCCEEEEeCcCC----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-------CcEEE
Confidence 8 899999999762 3344444322 12322321 22233334444459999999983 45689
Q ss_pred eCCCCCE-EECCCCCCC
Q psy17309 671 NPVTKTW-SQVPDMYNP 686 (824)
Q Consensus 671 d~~~~~W-~~~~~~p~~ 686 (824)
|+.++++ +.++.+|..
T Consensus 195 d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 195 DYKTNTVVRTLPDLPGG 211 (243)
T ss_pred eCCCCeEEeeCCCCCCC
Confidence 9999987 788888753
No 54
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.39 E-value=7.5e-05 Score=75.76 Aligned_cols=195 Identities=13% Similarity=0.104 Sum_probs=116.5
Q ss_pred ceEEEEECCCCceEEeccCCCCcc---e--EEEEEE---CC-EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcc-c
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRC---Y--VSTAVH---QD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVE-R 593 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~---~--~~~~~~---~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~-r 593 (824)
..+.++||.|++|..+|+.+.++. . .+.... +. +|..+...........+++|+..+++|+.+...+.. .
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence 568999999999999986554211 1 111111 11 555554432222345789999999999988643321 1
Q ss_pred CceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCc----ceEEEEECCEEEEEecCCCCCccceEEE
Q psy17309 594 SDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRS----GVSCIAYHECIYVIGGFNGMSRMCNGEK 669 (824)
Q Consensus 594 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~~~~~~~v~~ 669 (824)
.....+.++|.||-+...........+..||..+.+|...-++|..+. ....+.++|+|.++....... .-++|+
T Consensus 94 ~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~IWv 172 (230)
T TIGR01640 94 LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTN-NFDLWV 172 (230)
T ss_pred ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCCC-cEEEEE
Confidence 122266789999988754321111268999999999995223444332 345677789999887643211 246777
Q ss_pred Ee-CCCCCEEECCCCC---CCCc----ceEEEEECCEEEEEccCCCCceeeEEEEEECCCC
Q psy17309 670 YN-PVTKTWSQVPDMY---NPRS----NFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 670 yd-~~~~~W~~~~~~p---~~r~----~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
.+ .....|++.-.++ .+.. ....+..+++|++..+... ..-+..||+.++
T Consensus 173 l~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~---~~~~~~y~~~~~ 230 (230)
T TIGR01640 173 LNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDEN---PFYIFYYNVGEN 230 (230)
T ss_pred ECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCC---ceEEEEEeccCC
Confidence 75 3456799863222 1111 1234455889888765311 113889999875
No 55
>KOG0783|consensus
Probab=98.31 E-value=7.3e-07 Score=98.18 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=95.7
Q ss_pred eeeecceEEEEccccc--------ccccceeEEeeecccchhhhheeec-ccceecCH-----hhHHHHHHHHhhcChHh
Q psy17309 226 TAVHQDVIYAMGGYNG--------QRRQNSVEKYNYTENQDKIEEKKLF-ERKLHITE-----DNVASLLLATDFFCMSK 291 (824)
Q Consensus 226 ~~~~~~~~~~~~g~~~--------e~~~~~i~l~~~~~~~~~~ll~~~Y-t~~l~l~~-----~~v~~ll~~a~~~~i~~ 291 (824)
+.+|+-++.+...||. |+..-.+.+--+..+.|+.+|+|+| +.+..+-. +=+-++|..||.|-|.+
T Consensus 723 l~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~ 802 (1267)
T KOG0783|consen 723 LKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILE 802 (1267)
T ss_pred cccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHH
Confidence 6788888888877764 3333333344445889999999999 55654433 34789999999999999
Q ss_pred HHHHHHHHHhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Q psy17309 292 AQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVA 340 (824)
Q Consensus 292 l~~~c~~~l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~ 340 (824)
|+..|+.-|...|+..||..++.||.+|++..|+..|.+||..|+..+.
T Consensus 803 Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~L 851 (1267)
T KOG0783|consen 803 LKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFL 851 (1267)
T ss_pred HHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999998766
No 56
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=98.31 E-value=5.7e-08 Score=86.12 Aligned_cols=85 Identities=13% Similarity=0.166 Sum_probs=69.6
Q ss_pred cCcceeeeeeecceEEEE-ccc-ccccccceeEEeeecccchhhhheeecccceecC-HhhHHHHHHHHhhcChHhHHHH
Q psy17309 219 FKRCYVSTAVHQDVIYAM-GGY-NGQRRQNSVEKYNYTENQDKIEEKKLFERKLHIT-EDNVASLLLATDFFCMSKAQDL 295 (824)
Q Consensus 219 ~~r~~~~~~~~~~~~~~~-~g~-~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~-~~~v~~ll~~a~~~~i~~l~~~ 295 (824)
...|...+++++.+|..+ .+. ..+....+|.+.++++++|+.+++|+|++++.++ .+++.+++.+|+.|+++.|++.
T Consensus 23 ~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~L~~~ 102 (111)
T PF00651_consen 23 FYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPELKKA 102 (111)
T ss_dssp EEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHHHHHH
T ss_pred EeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHHHHHH
Confidence 445555666666666666 222 3455556789999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHhhc
Q psy17309 296 CCDFIKRL 303 (824)
Q Consensus 296 c~~~l~~~ 303 (824)
|.++|+++
T Consensus 103 ~~~~l~~~ 110 (111)
T PF00651_consen 103 CEKFLQES 110 (111)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999864
No 57
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.18 E-value=4.8e-05 Score=75.74 Aligned_cols=150 Identities=19% Similarity=0.205 Sum_probs=98.8
Q ss_pred CeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCC----CeEEEcC-CCCCCCcceEE
Q psy17309 571 NSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPEC----NQWTLIE-PMRHRRSGVSC 645 (824)
Q Consensus 571 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~----~~W~~~~-~~p~~r~~~~~ 645 (824)
.....||+.+++++.+......-+...+..-+|++.+.||..+. ...+-.|+|.+ ..|.+.. .|..+|-.+++
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~ 123 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA 123 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECcccccCCCccccc
Confidence 34567999999998775443333333333448999999998542 35677888865 5798876 58889988888
Q ss_pred EEE-CCEEEEEecCCCCCccceEEEEeCCCC-----CEEECCCC--CCCCcc--eEEEEECCEEEEEccCCCCceeeEEE
Q psy17309 646 IAY-HECIYVIGGFNGMSRMCNGEKYNPVTK-----TWSQVPDM--YNPRSN--FAIEVIDDMIFAIGGFNGVTTIYHVE 715 (824)
Q Consensus 646 ~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~-----~W~~~~~~--p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~v~ 715 (824)
..+ +|+++|+||... ...+.+.+... .|..+... ..+... +....-+|+||+++.. ...
T Consensus 124 ~~L~DG~vlIvGG~~~----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-------~s~ 192 (243)
T PF07250_consen 124 TTLPDGRVLIVGGSNN----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-------GSI 192 (243)
T ss_pred eECCCCCEEEEeCcCC----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-------CcE
Confidence 877 899999999752 23333333221 12222211 112222 2333349999999875 457
Q ss_pred EEECCCCcE-EeccCCCCC
Q psy17309 716 CYDEKTDEW-YEATDMNIY 733 (824)
Q Consensus 716 ~yd~~~~~W-~~~~~~p~~ 733 (824)
+||+.++++ +.++.+|..
T Consensus 193 i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 193 IYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred EEeCCCCeEEeeCCCCCCC
Confidence 899999987 788888874
No 58
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=98.14 E-value=4.8e-07 Score=76.42 Aligned_cols=75 Identities=19% Similarity=0.250 Sum_probs=59.9
Q ss_pred eeeeeeecceEEEE-cccccccccceeEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHHH
Q psy17309 223 YVSTAVHQDVIYAM-GGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCC 297 (824)
Q Consensus 223 ~~~~~~~~~~~~~~-~g~~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c~ 297 (824)
...+...+.+|..| .+...+..+..+.+.+.++..|+.+++|+|++++.++.+++.+++.+|++|+++.|++.|+
T Consensus 15 ~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 15 KAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHHHHhhhC
Confidence 33344444444444 2233333678899999999999999999999999999999999999999999999999984
No 59
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.12 E-value=0.00018 Score=72.94 Aligned_cols=168 Identities=11% Similarity=0.130 Sum_probs=103.8
Q ss_pred ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCce----EEEEECC-----EEEEEcccCCCCcCCceEEEe
Q psy17309 554 HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDA----SATTLQG-----KIYITGGFNGHNCLNSCEVYD 624 (824)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~----~~~~~~~-----~lyv~GG~~~~~~~~~v~~yd 624 (824)
++|.|.+..+ ..+.++||.|.+|..+|+.+.++... .+..++. |+..+...........+++|+
T Consensus 4 CnGLlc~~~~-------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys 76 (230)
T TIGR01640 4 CDGLICFSYG-------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYT 76 (230)
T ss_pred cceEEEEecC-------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEE
Confidence 4666655432 56899999999999998655421111 1111221 455444321112345789999
Q ss_pred CCCCeEEEcCCCCCC-CcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEE-CCCCCCCC----cceEEEEECCE
Q psy17309 625 PECNQWTLIEPMRHR-RSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQ-VPDMYNPR----SNFAIEVIDDM 698 (824)
Q Consensus 625 ~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p~~r----~~~~~~~~~~~ 698 (824)
..++.|+.+.+.+.. ......+.++|.||-+...........+..||+.+.+|++ ++ +|..+ ....++.++|+
T Consensus 77 ~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~ 155 (230)
T TIGR01640 77 LGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGK 155 (230)
T ss_pred eCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee-cCccccccccceEEEEECCE
Confidence 999999998743322 1122267789999998754322222379999999999996 43 34332 23567778999
Q ss_pred EEEEccCCCCceeeEEEEEE-CCCCcEEeccCC
Q psy17309 699 IFAIGGFNGVTTIYHVECYD-EKTDEWYEATDM 730 (824)
Q Consensus 699 i~v~GG~~~~~~~~~v~~yd-~~~~~W~~~~~~ 730 (824)
|.++....... .-++|+.+ -....|++.-.+
T Consensus 156 L~~v~~~~~~~-~~~IWvl~d~~~~~W~k~~~i 187 (230)
T TIGR01640 156 LAVLKQKKDTN-NFDLWVLNDAGKQEWSKLFTV 187 (230)
T ss_pred EEEEEecCCCC-cEEEEEECCCCCCceeEEEEE
Confidence 98887543221 24788875 446679986333
No 60
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.85 E-value=0.017 Score=63.78 Aligned_cols=249 Identities=14% Similarity=0.188 Sum_probs=141.5
Q ss_pred CCCCCCEEEEEccCCCCCCCceEEEEECCCC--cEEEcccCC------CCCCCceeEEEEECCEEEEEeecCCCcccceE
Q psy17309 455 PRVPHEILFAIGGWSGGSPTDFVETYDTRAD--RWVKIDQVD------PMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSC 526 (824)
Q Consensus 455 ~r~~~~~l~~~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~------~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 526 (824)
|-...+.+|+... ...+.++|..+. .|..-.... ...++...+.++.++.||+.+. ...+
T Consensus 65 Pvv~~~~vy~~~~------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~------~g~l 132 (394)
T PRK11138 65 PAVAYNKVYAADR------AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE------KGQV 132 (394)
T ss_pred cEEECCEEEEECC------CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC------CCEE
Confidence 3334566666543 246889998765 476521110 0011223345666888887542 2469
Q ss_pred EEEECCCCc--eEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCc--EEeecCCCc--ccCceEEEE
Q psy17309 527 RCFNAVTKV--WKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ--WSLIAPMNV--ERSDASATT 600 (824)
Q Consensus 527 ~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~--~r~~~~~~~ 600 (824)
+++|..+++ |+.-.+- + ...+-++.++.+|+..+ ...++.+|+.+.+ |+.-...|. .+...+-++
T Consensus 133 ~ald~~tG~~~W~~~~~~--~-~~ssP~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v 203 (394)
T PRK11138 133 YALNAEDGEVAWQTKVAG--E-ALSRPVVSDGLVLVHTS------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT 203 (394)
T ss_pred EEEECCCCCCcccccCCC--c-eecCCEEECCEEEEECC------CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE
Confidence 999998875 8753221 1 11223456888887543 2468999998875 876543332 122223345
Q ss_pred ECCEEEEEcccCCCCcCCceEEEeCCCCe--EEEcCCCCCC-----C---cceEEEEECCEEEEEecCCCCCccceEEEE
Q psy17309 601 LQGKIYITGGFNGHNCLNSCEVYDPECNQ--WTLIEPMRHR-----R---SGVSCIAYHECIYVIGGFNGMSRMCNGEKY 670 (824)
Q Consensus 601 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~-----r---~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y 670 (824)
.++.+|+..+ + ..+..+|+++++ |+.-...|.. | ...+-++.++.+|+.+.. ..++++
T Consensus 204 ~~~~v~~~~~-~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~------g~l~al 271 (394)
T PRK11138 204 AFGGAIVGGD-N-----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN------GNLVAL 271 (394)
T ss_pred ECCEEEEEcC-C-----CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcC------CeEEEE
Confidence 5777777443 2 357888888764 8653222211 0 112334568999986642 468999
Q ss_pred eCCCCC--EEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCC--cEEeccCCCCCccceeEEEEcCcc
Q psy17309 671 NPVTKT--WSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTD--EWYEATDMNIYRSALSACVIMGLP 746 (824)
Q Consensus 671 d~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~~ 746 (824)
|+.+.+ |+.- ...+ ...+..+++||+.... ..++.+|+++. .|+.-. ...+...+.++.++.+
T Consensus 272 d~~tG~~~W~~~--~~~~---~~~~~~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~--~~~~~~~sp~v~~g~l 338 (394)
T PRK11138 272 DLRSGQIVWKRE--YGSV---NDFAVDGGRIYLVDQN------DRVYALDTRGGVELWSQSD--LLHRLLTAPVLYNGYL 338 (394)
T ss_pred ECCCCCEEEeec--CCCc---cCcEEECCEEEEEcCC------CeEEEEECCCCcEEEcccc--cCCCcccCCEEECCEE
Confidence 998764 8753 1111 1345678999997532 26889998876 476421 1122233445567777
Q ss_pred cee
Q psy17309 747 NVY 749 (824)
Q Consensus 747 ~~~ 749 (824)
|+.
T Consensus 339 ~v~ 341 (394)
T PRK11138 339 VVG 341 (394)
T ss_pred EEE
Confidence 664
No 61
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.81 E-value=0.012 Score=65.11 Aligned_cols=231 Identities=13% Similarity=0.086 Sum_probs=133.7
Q ss_pred ceEEEEECCCC--cEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCC--Ccce
Q psy17309 475 DFVETYDTRAD--RWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNF--KRCY 548 (824)
Q Consensus 475 ~~~~~yd~~~~--~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~--~r~~ 548 (824)
..++++|..+. .|.. ..+. + ...+-++.++.+|+..+ ...++.+|+.+++ |+.-...|. .+..
T Consensus 130 g~l~ald~~tG~~~W~~--~~~~--~-~~ssP~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 198 (394)
T PRK11138 130 GQVYALNAEDGEVAWQT--KVAG--E-ALSRPVVSDGLVLVHTS------NGMLQALNESDGAVKWTVNLDVPSLTLRGE 198 (394)
T ss_pred CEEEEEECCCCCCcccc--cCCC--c-eecCCEEECCEEEEECC------CCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence 46889998765 5865 2111 1 11223445788887543 2469999999877 876433221 1222
Q ss_pred EEEEEECCEEEEEecccCCCCCCeEEEEeCCCCc--EEeecCCCcc--------cCceEEEEECCEEEEEcccCCCCcCC
Q psy17309 549 VSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ--WSLIAPMNVE--------RSDASATTLQGKIYITGGFNGHNCLN 618 (824)
Q Consensus 549 ~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~ 618 (824)
.+-++.++.+|+..+ ...+..+|+.+.+ |+.-...|.. ....+-++.++.+|+.+. + .
T Consensus 199 ~sP~v~~~~v~~~~~------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~-----g 266 (394)
T PRK11138 199 SAPATAFGGAIVGGD------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-N-----G 266 (394)
T ss_pred CCCEEECCEEEEEcC------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-C-----C
Confidence 233455777777543 2467888888764 8643222211 111233456899998653 2 4
Q ss_pred ceEEEeCCCCe--EEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC--EEECCCCCCCCcceEEEE
Q psy17309 619 SCEVYDPECNQ--WTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT--WSQVPDMYNPRSNFAIEV 694 (824)
Q Consensus 619 ~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~ 694 (824)
.+.++|+.+++ |+.- .... ...+..+++||+.... ..++++|+.+.+ |+.-. ...+...+.++
T Consensus 267 ~l~ald~~tG~~~W~~~--~~~~---~~~~~~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~--~~~~~~~sp~v 333 (394)
T PRK11138 267 NLVALDLRSGQIVWKRE--YGSV---NDFAVDGGRIYLVDQN------DRVYALDTRGGVELWSQSD--LLHRLLTAPVL 333 (394)
T ss_pred eEEEEECCCCCEEEeec--CCCc---cCcEEECCEEEEEcCC------CeEEEEECCCCcEEEcccc--cCCCcccCCEE
Confidence 68899998765 8753 2111 1245678999997642 468999998764 76421 11223334456
Q ss_pred ECCEEEEEccCCCCceeeEEEEEECCCCc--EEeccCCCCCccceeEEEEcCcccee
Q psy17309 695 IDDMIFAIGGFNGVTTIYHVECYDEKTDE--WYEATDMNIYRSALSACVIMGLPNVY 749 (824)
Q Consensus 695 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~~~~~ 749 (824)
.+++||+... ++ .++++|+++.+ |+. .++......+-++.++.+|+.
T Consensus 334 ~~g~l~v~~~-~G-----~l~~ld~~tG~~~~~~--~~~~~~~~s~P~~~~~~l~v~ 382 (394)
T PRK11138 334 YNGYLVVGDS-EG-----YLHWINREDGRFVAQQ--KVDSSGFLSEPVVADDKLLIQ 382 (394)
T ss_pred ECCEEEEEeC-CC-----EEEEEECCCCCEEEEE--EcCCCcceeCCEEECCEEEEE
Confidence 7899987532 22 57888988864 443 222222334456677877765
No 62
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.75 E-value=0.0019 Score=63.72 Aligned_cols=182 Identities=15% Similarity=0.209 Sum_probs=102.9
Q ss_pred EEEEecccC-CCCCCeEEEEeCCCCc--------E---EeecCCCcccCceEEEEE--CC--EEEEEcccCCC-------
Q psy17309 558 IYAMGGYNG-QRRQNSVEKYNYTENQ--------W---SLIAPMNVERSDASATTL--QG--KIYITGGFNGH------- 614 (824)
Q Consensus 558 iyv~GG~~~-~~~~~~~~~yd~~t~~--------W---~~~~~~p~~r~~~~~~~~--~~--~lyv~GG~~~~------- 614 (824)
-++-||.+. ....++++.....+.. . +.+++.|.+|++|++.++ .| -..+|||....
T Consensus 41 YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTT 120 (337)
T PF03089_consen 41 YLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTT 120 (337)
T ss_pred EEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccch
Confidence 344577763 3345666766544322 1 234789999999999877 22 47788996421
Q ss_pred -------CcCCceEEEeCCCCeEEE--cCCCCCCCcceEEEEECCEEEEEecCC--CCCccceEEEEeCCC---CCEEEC
Q psy17309 615 -------NCLNSCEVYDPECNQWTL--IEPMRHRRSGVSCIAYHECIYVIGGFN--GMSRMCNGEKYNPVT---KTWSQV 680 (824)
Q Consensus 615 -------~~~~~v~~yd~~~~~W~~--~~~~p~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~v~~yd~~~---~~W~~~ 680 (824)
.....|+..|++-+-.+. ++.+....+.|.+.+-++.+|++||.. ...+...+++...+- .-+-..
T Consensus 121 enWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~vsC 200 (337)
T PF03089_consen 121 ENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAVSC 200 (337)
T ss_pred hhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCceeEE
Confidence 234567778887776553 345566778888888999999999953 233344555443321 111111
Q ss_pred CCCCCCCcceEEEEE---CCEEEEEccCCCCc----e-----e--eEEEEEECCCCcEEeccCCCCCccceeEEE
Q psy17309 681 PDMYNPRSNFAIEVI---DDMIFAIGGFNGVT----T-----I--YHVECYDEKTDEWYEATDMNIYRSALSACV 741 (824)
Q Consensus 681 ~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~----~-----~--~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~ 741 (824)
.-++...+-.++.+. .++.+|+||+...+ . + +.|.+-..++-.|+. ++...|..++..+
T Consensus 201 ~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQKRm~C~~V~Ldd~~I~ie~~E~P~Wt~--dI~hSrtWFGgs~ 273 (337)
T PF03089_consen 201 TVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQKRMECNTVSLDDDGIHIEEREPPEWTG--DIKHSRTWFGGSM 273 (337)
T ss_pred EECCCCceEeeeeEeecCCCceEEEecccccceeeeeeeEEEEeCCceEeccCCCCCCCC--CcCcCcccccccc
Confidence 122333332332222 46788899985432 0 1 224444455566764 3444555544433
No 63
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.71 E-value=0.046 Score=55.48 Aligned_cols=206 Identities=17% Similarity=0.200 Sum_probs=123.0
Q ss_pred eEEEEECCCCc--EEEcccCCCCCCCceeE--EEEECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCCCcceE
Q psy17309 476 FVETYDTRADR--WVKIDQVDPMGPRAYHG--TAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNFKRCYV 549 (824)
Q Consensus 476 ~~~~yd~~~~~--W~~~~~~~~~~~r~~~~--~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~ 549 (824)
.+.++|+.+.+ |.. .. ..+..... .+..++.+|+..+ ...++++|+.+++ |+.-. +.+-...
T Consensus 4 ~l~~~d~~tG~~~W~~--~~--~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~--~~~~~~~ 71 (238)
T PF13360_consen 4 TLSALDPRTGKELWSY--DL--GPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL--PGPISGA 71 (238)
T ss_dssp EEEEEETTTTEEEEEE--EC--SSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC--SSCGGSG
T ss_pred EEEEEECCCCCEEEEE--EC--CCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec--cccccce
Confidence 56788887664 665 11 11122222 3336889998843 3679999998876 66543 2221111
Q ss_pred EEEEECCEEEEEecccCCCCCCeEEEEeCCCCc--EE-eecCCCc--ccCceEEEEECCEEEEEcccCCCCcCCceEEEe
Q psy17309 550 STAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ--WS-LIAPMNV--ERSDASATTLQGKIYITGGFNGHNCLNSCEVYD 624 (824)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~-~~~~~p~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd 624 (824)
.+..++.||+..+ .+.++.+|..+.+ |+ .....+. .+......+.++.+|+... ...+..+|
T Consensus 72 -~~~~~~~v~v~~~------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~l~~~d 138 (238)
T PF13360_consen 72 -PVVDGGRVYVGTS------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS------SGKLVALD 138 (238)
T ss_dssp -EEEETTEEEEEET------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET------CSEEEEEE
T ss_pred -eeecccccccccc------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec------cCcEEEEe
Confidence 4777899988863 1379999987764 98 4433232 2334445555777777653 35789999
Q ss_pred CCCCe--EEEcCCCCCCCc--------ceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC--EEECCCCCCCCcceE-
Q psy17309 625 PECNQ--WTLIEPMRHRRS--------GVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT--WSQVPDMYNPRSNFA- 691 (824)
Q Consensus 625 ~~~~~--W~~~~~~p~~r~--------~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~- 691 (824)
+++++ |+.-...+.... ....+..++.+|+..+.. .+..+|..+.+ |+.. +.. ..+
T Consensus 139 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~tg~~~w~~~--~~~---~~~~ 207 (238)
T PF13360_consen 139 PKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDLATGEKLWSKP--ISG---IYSL 207 (238)
T ss_dssp TTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEETTTTEEEEEEC--SS----ECEC
T ss_pred cCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC------eEEEEECCCCCEEEEec--CCC---ccCC
Confidence 99876 776544433211 123333468888887642 25666998886 8443 211 222
Q ss_pred EEEECCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 692 IEVIDDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 692 ~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
....++.||+.. .+ ..+.++|+++++
T Consensus 208 ~~~~~~~l~~~~-~~-----~~l~~~d~~tG~ 233 (238)
T PF13360_consen 208 PSVDGGTLYVTS-SD-----GRLYALDLKTGK 233 (238)
T ss_dssp EECCCTEEEEEE-TT-----TEEEEEETTTTE
T ss_pred ceeeCCEEEEEe-CC-----CEEEEEECCCCC
Confidence 344577777776 32 278999999874
No 64
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.48 E-value=0.15 Score=56.02 Aligned_cols=230 Identities=15% Similarity=0.211 Sum_probs=127.1
Q ss_pred ceEEEEECCCCc--EEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCCCcceEE
Q psy17309 475 DFVETYDTRADR--WVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNFKRCYVS 550 (824)
Q Consensus 475 ~~~~~yd~~~~~--W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~ 550 (824)
..+.++|+.+.+ |.. .... +...+.++.++.+|+.+. ...++++|+.+++ |+.-.. .. ...+
T Consensus 75 g~v~a~d~~tG~~~W~~--~~~~---~~~~~p~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~--~~-~~~~ 140 (377)
T TIGR03300 75 GTVVALDAETGKRLWRV--DLDE---RLSGGVGADGGLVFVGTE------KGEVIALDAEDGKELWRAKLS--SE-VLSP 140 (377)
T ss_pred CeEEEEEccCCcEeeee--cCCC---CcccceEEcCCEEEEEcC------CCEEEEEECCCCcEeeeeccC--ce-eecC
Confidence 468999987664 765 1111 112233444777776442 2469999998765 874322 11 1122
Q ss_pred EEEECCEEEEEecccCCCCCCeEEEEeCCCCc--EEeecCCCc--ccCceEEEEECCEEEEEcccCCCCcCCceEEEeCC
Q psy17309 551 TAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ--WSLIAPMNV--ERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPE 626 (824)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~ 626 (824)
.+..++.+|+..+ ...++.+|+.+.+ |+.-...+. .+...+.++.++.+|+ |..+ ..+..+|+.
T Consensus 141 p~v~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~~-----g~v~ald~~ 208 (377)
T TIGR03300 141 PLVANGLVVVRTN------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFAG-----GKLVALDLQ 208 (377)
T ss_pred CEEECCEEEEECC------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECCC-----CEEEEEEcc
Confidence 3445778877543 2568999998764 875433221 1223334556776654 3322 368889987
Q ss_pred CCe--EEEcCCCCCCC--------cceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC--EEECCCCCCCCcceEEEE
Q psy17309 627 CNQ--WTLIEPMRHRR--------SGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT--WSQVPDMYNPRSNFAIEV 694 (824)
Q Consensus 627 ~~~--W~~~~~~p~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~ 694 (824)
+++ |+.-...+... ...+.+..++.+|+.+.. ..+++||+++.+ |+.-. + .....+.
T Consensus 209 tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~------g~l~a~d~~tG~~~W~~~~--~---~~~~p~~ 277 (377)
T TIGR03300 209 TGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ------GRVAALDLRSGRVLWKRDA--S---SYQGPAV 277 (377)
T ss_pred CCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC------CEEEEEECCCCcEEEeecc--C---CccCceE
Confidence 764 86432222111 112334568888886542 468999997754 76531 1 1223445
Q ss_pred ECCEEEEEccCCCCceeeEEEEEECCCC--cEEeccCCCCCccceeEEEEcCcccee
Q psy17309 695 IDDMIFAIGGFNGVTTIYHVECYDEKTD--EWYEATDMNIYRSALSACVIMGLPNVY 749 (824)
Q Consensus 695 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~~~~~ 749 (824)
.+++||+.... ..++.+|..+. .|+.- .++ .+...+.++.++.+|+.
T Consensus 278 ~~~~vyv~~~~------G~l~~~d~~tG~~~W~~~-~~~-~~~~ssp~i~g~~l~~~ 326 (377)
T TIGR03300 278 DDNRLYVTDAD------GVVVALDRRSGSELWKND-ELK-YRQLTAPAVVGGYLVVG 326 (377)
T ss_pred eCCEEEEECCC------CeEEEEECCCCcEEEccc-ccc-CCccccCEEECCEEEEE
Confidence 68899987531 26888998775 47652 111 11222334456655553
No 65
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.48 E-value=0.078 Score=58.21 Aligned_cols=231 Identities=13% Similarity=0.088 Sum_probs=127.2
Q ss_pred ceEEEEECCCC--cEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCC--Ccce
Q psy17309 475 DFVETYDTRAD--RWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNF--KRCY 548 (824)
Q Consensus 475 ~~~~~yd~~~~--~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~--~r~~ 548 (824)
..++++|+.+. .|..- ... ....+.++.++.+|+..+ ...++++|+.+++ |+.-...+. .+..
T Consensus 115 g~l~ald~~tG~~~W~~~--~~~---~~~~~p~v~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~ 183 (377)
T TIGR03300 115 GEVIALDAEDGKELWRAK--LSS---EVLSPPLVANGLVVVRTN------DGRLTALDAATGERLWTYSRVTPALTLRGS 183 (377)
T ss_pred CEEEEEECCCCcEeeeec--cCc---eeecCCEEECCEEEEECC------CCeEEEEEcCCCceeeEEccCCCceeecCC
Confidence 46889998665 47652 111 111223345777777543 2468999998765 774332221 1222
Q ss_pred EEEEEECCEEEEEecccCCCCCCeEEEEeCCCC--cEEeecCCCccc--------CceEEEEECCEEEEEcccCCCCcCC
Q psy17309 549 VSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTEN--QWSLIAPMNVER--------SDASATTLQGKIYITGGFNGHNCLN 618 (824)
Q Consensus 549 ~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~r--------~~~~~~~~~~~lyv~GG~~~~~~~~ 618 (824)
.+.+..++.+|+ |.. ...+..+|+.+. .|+.-...+... ...+.++.++.+|+.+. ..
T Consensus 184 ~sp~~~~~~v~~-~~~-----~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~------~g 251 (377)
T TIGR03300 184 ASPVIADGGVLV-GFA-----GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY------QG 251 (377)
T ss_pred CCCEEECCEEEE-ECC-----CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc------CC
Confidence 334556776654 332 246889998776 486432222111 12233456888888543 24
Q ss_pred ceEEEeCCCCe--EEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCC--CEEECCCCCCCCcceEEEE
Q psy17309 619 SCEVYDPECNQ--WTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTK--TWSQVPDMYNPRSNFAIEV 694 (824)
Q Consensus 619 ~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~ 694 (824)
.+.+||+++++ |+.-. + ...+.+..+++||+... ...++++|..+. .|+.-. +. .+...+.+.
T Consensus 252 ~l~a~d~~tG~~~W~~~~--~---~~~~p~~~~~~vyv~~~------~G~l~~~d~~tG~~~W~~~~-~~-~~~~ssp~i 318 (377)
T TIGR03300 252 RVAALDLRSGRVLWKRDA--S---SYQGPAVDDNRLYVTDA------DGVVVALDRRSGSELWKNDE-LK-YRQLTAPAV 318 (377)
T ss_pred EEEEEECCCCcEEEeecc--C---CccCceEeCCEEEEECC------CCeEEEEECCCCcEEEcccc-cc-CCccccCEE
Confidence 68899998764 76531 1 12233456899998753 246889998765 476521 11 122223344
Q ss_pred ECCEEEEEccCCCCceeeEEEEEECCCCc--EEeccCCCCCccceeEEEEcCcccee
Q psy17309 695 IDDMIFAIGGFNGVTTIYHVECYDEKTDE--WYEATDMNIYRSALSACVIMGLPNVY 749 (824)
Q Consensus 695 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~~~~~ 749 (824)
.+++||+.. .++ .++++|+++.+ |+. +++......+.++.++++|+.
T Consensus 319 ~g~~l~~~~-~~G-----~l~~~d~~tG~~~~~~--~~~~~~~~~sp~~~~~~l~v~ 367 (377)
T TIGR03300 319 VGGYLVVGD-FEG-----YLHWLSREDGSFVARL--KTDGSGIASPPVVVGDGLLVQ 367 (377)
T ss_pred ECCEEEEEe-CCC-----EEEEEECCCCCEEEEE--EcCCCccccCCEEECCEEEEE
Confidence 678777653 322 58888887753 332 122222334456777777764
No 66
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.44 E-value=0.027 Score=55.80 Aligned_cols=154 Identities=15% Similarity=0.157 Sum_probs=92.3
Q ss_pred CEEEEEccCCCC-CCCceEEEE--ECCC-CcEEEcc------cCCCCCCCceeEEEEE----CCEEEEEeecCC---C--
Q psy17309 460 EILFAIGGWSGG-SPTDFVETY--DTRA-DRWVKID------QVDPMGPRAYHGTAVI----GYNIYVIGGFDG---N-- 520 (824)
Q Consensus 460 ~~l~~~GG~~~~-~~~~~~~~y--d~~~-~~W~~~~------~~~~~~~r~~~~~~~~----~~~lyv~GG~~~---~-- 520 (824)
+.-++-||...+ +-++.++.. |.+. |+=..+- ....|.+|.+|++.++ ....++|||..- .
T Consensus 39 ~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qR 118 (337)
T PF03089_consen 39 EQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQR 118 (337)
T ss_pred eeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCcccc
Confidence 455667777653 334444444 3333 3322221 4678899999999888 345888999631 1
Q ss_pred ---------cccceEEEEECCCCceE--EeccCCCCcceEEEEEECCEEEEEeccc--CCCCCCeEEEEeCCC--C-cEE
Q psy17309 521 ---------EYYNSCRCFNAVTKVWK--EIAPMNFKRCYVSTAVHQDVIYAMGGYN--GQRRQNSVEKYNYTE--N-QWS 584 (824)
Q Consensus 521 ---------~~~~~~~~yd~~~~~W~--~~~~~~~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~yd~~t--~-~W~ 584 (824)
.....|+..|+.-+-.+ .+|.+......|.+.+-++.||++||.. .+.....+++....- . -+-
T Consensus 119 TTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~v 198 (337)
T PF03089_consen 119 TTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAV 198 (337)
T ss_pred chhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCcee
Confidence 12345788888876654 5667777888898999999999999975 223334455443221 1 122
Q ss_pred eecCCCcccCceEEEEE---CCEEEEEcccCC
Q psy17309 585 LIAPMNVERSDASATTL---QGKIYITGGFNG 613 (824)
Q Consensus 585 ~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~ 613 (824)
...-++...+-.++.+. .....|+||+..
T Consensus 199 sC~vl~~glSisSAIvt~~~~~e~iIlGGY~s 230 (337)
T PF03089_consen 199 SCTVLQGGLSISSAIVTQTGPHEYIILGGYQS 230 (337)
T ss_pred EEEECCCCceEeeeeEeecCCCceEEEecccc
Confidence 22234444443333332 467788899854
No 67
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.11 E-value=0.018 Score=61.76 Aligned_cols=122 Identities=15% Similarity=0.173 Sum_probs=83.3
Q ss_pred ECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCcc-----ceEEEE--e--
Q psy17309 601 LQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRM-----CNGEKY--N-- 671 (824)
Q Consensus 601 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~-----~~v~~y--d-- 671 (824)
.+.+|+.++.. ..+.+||+++..-...+.++.+.....++.++++||++......... ..++.+ +
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~ 148 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPP 148 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccc
Confidence 58899988654 34789999999988888887777777788889999999985332111 144444 4
Q ss_pred ------CCCCCEEECCCCCCCCc-------ceEEEEE-CCEEEE-EccCCCCceeeEEEEEECCCCcEEeccCCCCC
Q psy17309 672 ------PVTKTWSQVPDMYNPRS-------NFAIEVI-DDMIFA-IGGFNGVTTIYHVECYDEKTDEWYEATDMNIY 733 (824)
Q Consensus 672 ------~~~~~W~~~~~~p~~r~-------~~~~~~~-~~~i~v-~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 733 (824)
...-.|+.+++.|..+. -.+-+++ +..|+| +-|.. .-.+.||..+.+|+++++-..|
T Consensus 149 ~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~GdW~LP 220 (342)
T PF07893_consen 149 PDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGDWMLP 220 (342)
T ss_pred cccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccceecC
Confidence 22346888887664433 2344555 677888 44322 2378999999999999654333
No 68
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.08 E-value=0.28 Score=49.67 Aligned_cols=174 Identities=16% Similarity=0.181 Sum_probs=104.4
Q ss_pred ceEEEEECCCCc--eEEeccCCCCcceEE--EEEECCEEEEEecccCCCCCCeEEEEeCCCCc--EEeecCCCcccCceE
Q psy17309 524 NSCRCFNAVTKV--WKEIAPMNFKRCYVS--TAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ--WSLIAPMNVERSDAS 597 (824)
Q Consensus 524 ~~~~~yd~~~~~--W~~~~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~ 597 (824)
..+.++|+.+++ |+.-. ..+..... .+..++.+|+..+ ...++++|+.+.+ |+.-. +.+....
T Consensus 3 g~l~~~d~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~--~~~~~~~- 71 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDL--GPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL--PGPISGA- 71 (238)
T ss_dssp SEEEEEETTTTEEEEEEEC--SSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC--SSCGGSG-
T ss_pred CEEEEEECCCCCEEEEEEC--CCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec--cccccce-
Confidence 357888987776 77622 21222223 3447889999843 3689999998775 76543 2222222
Q ss_pred EEEECCEEEEEcccCCCCcCCceEEEeCCCCe--EE-EcCCCCCC--CcceEEEEECCEEEEEecCCCCCccceEEEEeC
Q psy17309 598 ATTLQGKIYITGGFNGHNCLNSCEVYDPECNQ--WT-LIEPMRHR--RSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNP 672 (824)
Q Consensus 598 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~-~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 672 (824)
....++.+|+..+ .+.+..+|..+++ |+ .....+.. ......+..++.+|+... ...+..+|+
T Consensus 72 ~~~~~~~v~v~~~------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~l~~~d~ 139 (238)
T PF13360_consen 72 PVVDGGRVYVGTS------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS------SGKLVALDP 139 (238)
T ss_dssp EEEETTEEEEEET------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET------CSEEEEEET
T ss_pred eeecccccccccc------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec------cCcEEEEec
Confidence 4677899988762 1378999977764 98 44332322 233344455777777764 257899999
Q ss_pred CCCC--EEECCCCCCCC--------cceEEEEECCEEEEEccCCCCceeeEEEEEECCCCc--EEe
Q psy17309 673 VTKT--WSQVPDMYNPR--------SNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDE--WYE 726 (824)
Q Consensus 673 ~~~~--W~~~~~~p~~r--------~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 726 (824)
++.+ |+.-...+... .....+..++.+|+..+... +..+|..+++ |+.
T Consensus 140 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~------~~~~d~~tg~~~w~~ 199 (238)
T PF13360_consen 140 KTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR------VVAVDLATGEKLWSK 199 (238)
T ss_dssp TTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS------EEEEETTTTEEEEEE
T ss_pred CCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe------EEEEECCCCCEEEEe
Confidence 8764 77644332211 11233334688888876532 4455999987 844
No 69
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.85 E-value=0.043 Score=58.86 Aligned_cols=121 Identities=14% Similarity=0.168 Sum_probs=83.8
Q ss_pred ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCC-----ceEEE--e--
Q psy17309 554 HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLN-----SCEVY--D-- 624 (824)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~-----~v~~y--d-- 624 (824)
.+.+|+.++.. ..+.+||+.+..-...|.|+.+.....++.++++||++.......... ..|.+ +
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~ 148 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPP 148 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccc
Confidence 58899998653 448899999999888888888777777778899999998764321111 44544 3
Q ss_pred ------CCCCeEEEcCCCCCCCc-------ceEEEEE-CCEEEE-EecCCCCCccceEEEEeCCCCCEEECCC--CCC
Q psy17309 625 ------PECNQWTLIEPMRHRRS-------GVSCIAY-HECIYV-IGGFNGMSRMCNGEKYNPVTKTWSQVPD--MYN 685 (824)
Q Consensus 625 ------~~~~~W~~~~~~p~~r~-------~~~~~~~-~~~iyv-~GG~~~~~~~~~v~~yd~~~~~W~~~~~--~p~ 685 (824)
...-.|+.+++.|..+. -.+-+++ +..|+| .-|.. ...+.||..+.+|+.++. ||.
T Consensus 149 ~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~GdW~LPF 221 (342)
T PF07893_consen 149 PDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGDWMLPF 221 (342)
T ss_pred cccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccceecCc
Confidence 22347888887665443 2334555 677888 33321 247999999999999974 553
No 70
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.64 E-value=0.26 Score=50.36 Aligned_cols=200 Identities=12% Similarity=0.079 Sum_probs=111.0
Q ss_pred CCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEEeccCC-----CC
Q psy17309 473 PTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN-----FK 545 (824)
Q Consensus 473 ~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-----~~ 545 (824)
....++.+++.+.+-..+..+. ..+++.. ++.+|+... .....+|+.+++++.+...+ ..
T Consensus 20 ~~~~i~~~~~~~~~~~~~~~~~------~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~~~~~~~ 86 (246)
T PF08450_consen 20 PGGRIYRVDPDTGEVEVIDLPG------PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGKVTVLADLPDGGVPFN 86 (246)
T ss_dssp TTTEEEEEETTTTEEEEEESSS------EEEEEEECTTSEEEEEET-------TCEEEEETTTTEEEEEEEEETTCSCTE
T ss_pred CCCEEEEEECCCCeEEEEecCC------CceEEEEccCCEEEEEEc-------CceEEEecCCCcEEEEeeccCCCcccC
Confidence 3457899999988766543322 3455555 688888764 34566799999998777653 22
Q ss_pred cceEEEEEECCEEEEEeccc-CCCCC--CeEEEEeCCCCcEEeec-CCCcccCceEEEEE--CCEEEEEcccCCCCcCCc
Q psy17309 546 RCYVSTAVHQDVIYAMGGYN-GQRRQ--NSVEKYNYTENQWSLIA-PMNVERSDASATTL--QGKIYITGGFNGHNCLNS 619 (824)
Q Consensus 546 r~~~~~~~~~~~iyv~GG~~-~~~~~--~~~~~yd~~t~~W~~~~-~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 619 (824)
+.+-.++.-+|.||+-.-.. ..... ..++++++. .+.+.+. .+..+ -+++.. ++.||+.-- ....
T Consensus 87 ~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg~~lyv~ds-----~~~~ 157 (246)
T PF08450_consen 87 RPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPDGKTLYVADS-----FNGR 157 (246)
T ss_dssp EEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETTSSEEEEEET-----TTTE
T ss_pred CCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---cceEECCcchheeeccc-----ccce
Confidence 33333444478888864221 11111 579999999 6655543 22221 234433 346887532 2356
Q ss_pred eEEEeCCCCe--EEEc---CCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEE
Q psy17309 620 CEVYDPECNQ--WTLI---EPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAI 692 (824)
Q Consensus 620 v~~yd~~~~~--W~~~---~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~ 692 (824)
+++||+.... +... ..++.....+-...+ +|.||+..-. ...|.+||++...-..+. +|.+ ..+.
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~-----~~~I~~~~p~G~~~~~i~-~p~~--~~t~ 229 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG-----GGRIVVFDPDGKLLREIE-LPVP--RPTN 229 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET-----TTEEEEEETTSCEEEEEE--SSS--SEEE
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC-----CCEEEEECCCccEEEEEc-CCCC--CEEE
Confidence 8999886432 3322 223332222333333 6899998431 258999999955554443 4433 3444
Q ss_pred EEE----CCEEEEE
Q psy17309 693 EVI----DDMIFAI 702 (824)
Q Consensus 693 ~~~----~~~i~v~ 702 (824)
+++ .+.|||.
T Consensus 230 ~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 230 CAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEESTTSSEEEEE
T ss_pred EEEECCCCCEEEEE
Confidence 444 2456665
No 71
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.45 E-value=0.53 Score=48.06 Aligned_cols=202 Identities=12% Similarity=0.117 Sum_probs=111.0
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
++.+|+..- ....++++|+.+++-..+.... ..+++.. ++.+|+... ....++|+.+.+++.
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGKVTV 74 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEET-------TCEEEEETTTTEEEE
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEc-------CceEEEecCCCcEEE
Confidence 356666642 2367999999998765543322 3344444 688888765 345677999999988
Q ss_pred ecCCC-----cccCceEEEEECCEEEEEcccCC-CCcC--CceEEEeCCCCeEEEcC-CCCCCCcceEEEEE-CC-EEEE
Q psy17309 586 IAPMN-----VERSDASATTLQGKIYITGGFNG-HNCL--NSCEVYDPECNQWTLIE-PMRHRRSGVSCIAY-HE-CIYV 654 (824)
Q Consensus 586 ~~~~p-----~~r~~~~~~~~~~~lyv~GG~~~-~~~~--~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~-~~-~iyv 654 (824)
+...+ ..+.+-.++.-+|.||+..-... .... ..++++++. .+.+.+. .+.. .-+.+.- ++ .||+
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~---pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGF---PNGIAFSPDGKTLYV 150 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESS---EEEEEEETTSSEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccc---ccceEECCcchheee
Confidence 86653 23333333344788888632211 1111 569999998 6655553 2221 1233333 44 5777
Q ss_pred EecCCCCCccceEEEEeCCCCC--EEE---CCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 655 IGGFNGMSRMCNGEKYNPVTKT--WSQ---VPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 655 ~GG~~~~~~~~~v~~yd~~~~~--W~~---~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
.--. ...+++|++.... +.. +..++......-..++ +|.||+..-.. ..|.+|||+-..-..+
T Consensus 151 ~ds~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~-----~~I~~~~p~G~~~~~i 220 (246)
T PF08450_consen 151 ADSF-----NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG-----GRIVVFDPDGKLLREI 220 (246)
T ss_dssp EETT-----TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-----TEEEEEETTSCEEEEE
T ss_pred cccc-----cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-----CEEEEECCCccEEEEE
Confidence 5432 3569999986433 332 2223322222322333 78999983211 2799999996555444
Q ss_pred cCCCCCccceeEEEE
Q psy17309 728 TDMNIYRSALSACVI 742 (824)
Q Consensus 728 ~~~p~~r~~~~~~~~ 742 (824)
.+|.+ ..+.+++
T Consensus 221 -~~p~~--~~t~~~f 232 (246)
T PF08450_consen 221 -ELPVP--RPTNCAF 232 (246)
T ss_dssp -E-SSS--SEEEEEE
T ss_pred -cCCCC--CEEEEEE
Confidence 35544 3344444
No 72
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.06 E-value=2.3 Score=44.38 Aligned_cols=174 Identities=14% Similarity=0.079 Sum_probs=85.0
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEE-eccCCCCcceEEE
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE-IAPMNFKRCYVST 551 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~ 551 (824)
..+..||+.+++-...-.. ...++ +++.. +..+|+.++. .+.+..||..+.+... ++....+ ..+
T Consensus 11 ~~v~~~d~~t~~~~~~~~~-~~~~~---~l~~~~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~~~~---~~~ 78 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPV-GQRPR---GITLSKDGKLLYVCASD-----SDTIQVIDLATGEVIGTLPSGPDP---ELF 78 (300)
T ss_pred CEEEEEECCCCceEEEEEC-CCCCC---ceEECCCCCEEEEEECC-----CCeEEEEECCCCcEEEeccCCCCc---cEE
Confidence 4688889877764332111 11122 23332 4457777653 2568899998877643 2221111 122
Q ss_pred EEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCC
Q psy17309 552 AVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECN 628 (824)
Q Consensus 552 ~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~ 628 (824)
+.. ++.+|+.++. ...+..||+.+.+- +..++......+++.. ++.+++++..++ +.+..||..+.
T Consensus 79 ~~~~~g~~l~~~~~~-----~~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~ 147 (300)
T TIGR03866 79 ALHPNGKILYIANED-----DNLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTY 147 (300)
T ss_pred EECCCCCEEEEEcCC-----CCeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEecCC----CeEEEEeCCCC
Confidence 222 3456666542 24688899987542 2222222222233333 666666665332 34566787765
Q ss_pred eEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC
Q psy17309 629 QWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 629 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 676 (824)
+-....... .+..+.+..-+++.+++++.. ...+..||+.+.+
T Consensus 148 ~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~----~~~v~i~d~~~~~ 190 (300)
T TIGR03866 148 EIVDNVLVD-QRPRFAEFTADGKELWVSSEI----GGTVSVIDVATRK 190 (300)
T ss_pred eEEEEEEcC-CCccEEEECCCCCEEEEEcCC----CCEEEEEEcCcce
Confidence 432211111 111222223355544444421 2468889988764
No 73
>KOG0310|consensus
Probab=95.94 E-value=0.8 Score=49.05 Aligned_cols=185 Identities=14% Similarity=0.225 Sum_probs=97.9
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCce-EEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEee
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVW-KEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI 586 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 586 (824)
+|+++..|+.. ..+..||..+..- ..+..-..|-..-.....++.+++.|+-+ ..+-.+|..+..- .
T Consensus 79 DG~LlaaGD~s-----G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd-----~v~k~~d~s~a~v--~ 146 (487)
T KOG0310|consen 79 DGRLLAAGDES-----GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD-----KVVKYWDLSTAYV--Q 146 (487)
T ss_pred CCeEEEccCCc-----CcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCC-----ceEEEEEcCCcEE--E
Confidence 89999999854 3588899544211 11111111211122344688999998743 2334445555442 2
Q ss_pred cCCCccc---CceEEEEECCEEEEEcccCCCCcCCceEEEeCCCC-eEEEcCCCCCCCcceEEEEE--CCEEEEEecCCC
Q psy17309 587 APMNVER---SDASATTLQGKIYITGGFNGHNCLNSCEVYDPECN-QWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNG 660 (824)
Q Consensus 587 ~~~p~~r---~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 660 (824)
..+...- ...++...++.|++.|||++ .+-.||..+. .|. -.+.....--.++.+ ++.|...||
T Consensus 147 ~~l~~htDYVR~g~~~~~~~hivvtGsYDg-----~vrl~DtR~~~~~v--~elnhg~pVe~vl~lpsgs~iasAgG--- 216 (487)
T KOG0310|consen 147 AELSGHTDYVRCGDISPANDHIVVTGSYDG-----KVRLWDTRSLTSRV--VELNHGCPVESVLALPSGSLIASAGG--- 216 (487)
T ss_pred EEecCCcceeEeeccccCCCeEEEecCCCc-----eEEEEEeccCCcee--EEecCCCceeeEEEcCCCCEEEEcCC---
Confidence 2222111 11123344789999999986 5667887776 343 222221111123333 345555565
Q ss_pred CCccceEEEEeCCCCCEEECCCCCCCCcce--EEE--EE--CCEEEEEccCCCCceeeEEEEEECCCCcEEeccCC
Q psy17309 661 MSRMCNGEKYNPVTKTWSQVPDMYNPRSNF--AIE--VI--DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDM 730 (824)
Q Consensus 661 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~--~~~--~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 730 (824)
+.+-++|+.+.. .++..+.+| +++ .+ ++.=++.||.++ .+-+|| +..|+.+-.+
T Consensus 217 ----n~vkVWDl~~G~-----qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-----~VKVfd--~t~~Kvv~s~ 276 (487)
T KOG0310|consen 217 ----NSVKVWDLTTGG-----QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR-----HVKVFD--TTNYKVVHSW 276 (487)
T ss_pred ----CeEEEEEecCCc-----eehhhhhcccceEEEEEeecCCceEeeccccc-----ceEEEE--ccceEEEEee
Confidence 678888876442 122222211 121 12 557778888876 588898 4457766433
No 74
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.91 E-value=4.2 Score=46.28 Aligned_cols=254 Identities=14% Similarity=0.154 Sum_probs=124.1
Q ss_pred ceEEEEECCCC--cEEEcccCCCCC-C--CceeEEEEECCEEEEEeecCCC----cccceEEEEECCCCc--eEEeccCC
Q psy17309 475 DFVETYDTRAD--RWVKIDQVDPMG-P--RAYHGTAVIGYNIYVIGGFDGN----EYYNSCRCFNAVTKV--WKEIAPMN 543 (824)
Q Consensus 475 ~~~~~yd~~~~--~W~~~~~~~~~~-~--r~~~~~~~~~~~lyv~GG~~~~----~~~~~~~~yd~~~~~--W~~~~~~~ 543 (824)
..+.++|..+. .|.. ...... . ....+.++.++.+|+ |..... .....++++|..+++ |+.-...+
T Consensus 120 g~v~AlD~~TG~~~W~~--~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~ 196 (488)
T cd00216 120 GRLVALDAETGKQVWKF--GNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEP 196 (488)
T ss_pred CeEEEEECCCCCEeeee--cCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeeccCC
Confidence 46888998765 4765 221110 0 012233444666654 432211 124578999998876 87422111
Q ss_pred ----CCcc--------------eEEEEE--ECCEEEEEeccc------------CCCCCCeEEEEeCCCCc--EEeecCC
Q psy17309 544 ----FKRC--------------YVSTAV--HQDVIYAMGGYN------------GQRRQNSVEKYNYTENQ--WSLIAPM 589 (824)
Q Consensus 544 ----~~r~--------------~~~~~~--~~~~iyv~GG~~------------~~~~~~~~~~yd~~t~~--W~~~~~~ 589 (824)
.+.. ..+.+. .++.||+-.|.. .....+.+..+|..+.+ |+.-...
T Consensus 197 ~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~ 276 (488)
T cd00216 197 DPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTP 276 (488)
T ss_pred CcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCC
Confidence 1100 011222 256777764421 11123579999998865 8753221
Q ss_pred Cc-----ccCceEEEE---ECCE---EEEEcccCCCCcCCceEEEeCCCCe--EEEcCCCCCCCcceEEEEECCEEEEEe
Q psy17309 590 NV-----ERSDASATT---LQGK---IYITGGFNGHNCLNSCEVYDPECNQ--WTLIEPMRHRRSGVSCIAYHECIYVIG 656 (824)
Q Consensus 590 p~-----~r~~~~~~~---~~~~---lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~G 656 (824)
+. ......+.. .++. +.++|..+ ..++.+|.++++ |+.-.. ...++.-.+.+|+-.
T Consensus 277 ~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~-----G~l~ald~~tG~~~W~~~~~------~~~~~~~~~~vyv~~ 345 (488)
T cd00216 277 HDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN-----GFFYVLDRTTGKLISARPEV------EQPMAYDPGLVYLGA 345 (488)
T ss_pred CCCcccccCCCCeEEeccccCCCeeEEEEEECCC-----ceEEEEECCCCcEeeEeEee------ccccccCCceEEEcc
Confidence 11 111111111 2232 33444433 358899998876 765321 011112226666643
Q ss_pred cCCC------------CCccceEEEEeCCCCC--EEECCCC-------CCCCcceEEEEECCEEEEEccCCCCceeeEEE
Q psy17309 657 GFNG------------MSRMCNGEKYNPVTKT--WSQVPDM-------YNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVE 715 (824)
Q Consensus 657 G~~~------------~~~~~~v~~yd~~~~~--W~~~~~~-------p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~ 715 (824)
.... ......+..+|..+.+ |+.-... ..+......+..++.||+ |..++ .++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~-g~~dG-----~l~ 419 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFA-GAADG-----YFR 419 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEE-ECCCC-----eEE
Confidence 2110 1123468889987654 8764320 012222334445555555 44433 688
Q ss_pred EEECCCC--cEEeccCCCCCccceeE-EEEcCccceec
Q psy17309 716 CYDEKTD--EWYEATDMNIYRSALSA-CVIMGLPNVYD 750 (824)
Q Consensus 716 ~yd~~~~--~W~~~~~~p~~r~~~~~-~~~~~~~~~~~ 750 (824)
.+|.++. .|+. +++.+....-+ ...++++|+..
T Consensus 420 ald~~tG~~lW~~--~~~~~~~a~P~~~~~~g~~yv~~ 455 (488)
T cd00216 420 AFDATTGKELWKF--RTPSGIQATPMTYEVNGKQYVGV 455 (488)
T ss_pred EEECCCCceeeEE--ECCCCceEcCEEEEeCCEEEEEE
Confidence 9998886 4664 34444332222 35588888864
No 75
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.90 E-value=0.11 Score=53.46 Aligned_cols=109 Identities=15% Similarity=0.228 Sum_probs=69.4
Q ss_pred CCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCC-cCCceEEEeCCCCeEEEcCC-----CCCCCc
Q psy17309 569 RQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHN-CLNSCEVYDPECNQWTLIEP-----MRHRRS 641 (824)
Q Consensus 569 ~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~-----~p~~r~ 641 (824)
....+..||+.+.+|..+..--.+. -.++... +++||+.|-..-.. ....+-.||.++.+|+.++. +|.+..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 4688999999999999876542221 1223333 67888777554333 45678899999999998875 344432
Q ss_pred ceEEEEEC-CEEEEEecCCCCCccceEEEEeCCCCCEEECCC
Q psy17309 642 GVSCIAYH-ECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPD 682 (824)
Q Consensus 642 ~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 682 (824)
.......+ +.+++.|.. .....-+..|| ..+|+.+..
T Consensus 93 a~~~~~~d~~~~~~aG~~--~~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRS--ANGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEEeeccCCceEEEecee--cCCCceEEEEc--CCceEeccc
Confidence 22222223 567777765 22234567775 679999865
No 76
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.80 E-value=1.4 Score=46.08 Aligned_cols=184 Identities=14% Similarity=0.060 Sum_probs=90.0
Q ss_pred EEEEEeecCCCcccceEEEEECCCCceEEeccCC-CCcceEEEEE-ECC-EEEEEecccCCCCCCeEEEEeCCCCcEEee
Q psy17309 510 NIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN-FKRCYVSTAV-HQD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLI 586 (824)
Q Consensus 510 ~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 586 (824)
.+|+.++.+ ..+.+||+.+++-...-... .++ +++. -++ .+|+.++. .+.+..||+.+.+....
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~~~~~---~l~~~~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~ 68 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPVGQRPR---GITLSKDGKLLYVCASD-----SDTIQVIDLATGEVIGT 68 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEECCCCCC---ceEECCCCCEEEEEECC-----CCeEEEEECCCCcEEEe
Confidence 466676643 46888998877643222211 122 2222 233 57777653 35688999988776432
Q ss_pred cCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEE-ECCEEEEEecCCCCCc
Q psy17309 587 APMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIA-YHECIYVIGGFNGMSR 663 (824)
Q Consensus 587 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 663 (824)
-+... ....++.. ++.+|+.++.+ ..+..||+.+.+- +..++......+++. -++.+++++..+.
T Consensus 69 ~~~~~--~~~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~--- 136 (300)
T TIGR03866 69 LPSGP--DPELFALHPNGKILYIANEDD-----NLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSETT--- 136 (300)
T ss_pred ccCCC--CccEEEECCCCCEEEEEcCCC-----CeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEecCC---
Confidence 11111 11222222 34566665432 4688899887542 222221111122332 3677777665321
Q ss_pred cceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 664 MCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 664 ~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
..+..||..+.+-....... .+..+....-+++.+++++... ..+.+||.++.+.
T Consensus 137 -~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~----~~v~i~d~~~~~~ 191 (300)
T TIGR03866 137 -NMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKELWVSSEIG----GTVSVIDVATRKV 191 (300)
T ss_pred -CeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCEEEEEcCCC----CEEEEEEcCccee
Confidence 24566787654432211111 1111222233555444444322 2588899887643
No 77
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.64 E-value=0.17 Score=52.12 Aligned_cols=109 Identities=10% Similarity=0.190 Sum_probs=70.1
Q ss_pred ccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCC-CCCeEEEEeCCCCcEEeecC-----CCcccC
Q psy17309 522 YYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQR-RQNSVEKYNYTENQWSLIAP-----MNVERS 594 (824)
Q Consensus 522 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~-----~p~~r~ 594 (824)
....+..||+.+.+|..+..--... -.++... +++||+.|-..-.. ....+-.||..+++|+.++. +|.+..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 4678999999999999877542222 2334444 67888877654332 45678899999999988765 344432
Q ss_pred ceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCC
Q psy17309 595 DASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEP 635 (824)
Q Consensus 595 ~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 635 (824)
....... .+.+++.|... .-...+..|| ..+|..+..
T Consensus 93 a~~~~~~d~~~~~~aG~~~--~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSA--NGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEEeeccCCceEEEeceec--CCCceEEEEc--CCceEeccc
Confidence 2222222 34677777652 2234566775 668998875
No 78
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=95.45 E-value=0.68 Score=46.96 Aligned_cols=183 Identities=14% Similarity=0.177 Sum_probs=107.5
Q ss_pred CCEEEEEeecCCCcccceEEEEEC-----CCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCc
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNA-----VTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 582 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~-----~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~ 582 (824)
++++|++.|..+. .++.|.- ..++....-.+|.+-.+.+.++++|.+|---. .++.+.+||+.+++
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~-----~s~~IvkydL~t~~ 100 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDLTTRS 100 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec-----CCceEEEEECcCCc
Confidence 3678888886543 4444432 33444444556666667778889998888643 35889999999987
Q ss_pred EEeecCCCcccCc------------eEEEEECCEEEEEcccCCCCcCCceEEEeCCC----CeEEEcCCCCCCCcceEEE
Q psy17309 583 WSLIAPMNVERSD------------ASATTLQGKIYITGGFNGHNCLNSCEVYDPEC----NQWTLIEPMRHRRSGVSCI 646 (824)
Q Consensus 583 W~~~~~~p~~r~~------------~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~----~~W~~~~~~p~~r~~~~~~ 646 (824)
-..-..+|.+... .-.++=++-|+|+=........-.+-+.||.+ .+|.. +.+.+.. ..+.
T Consensus 101 v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T--~~~k~~~-~naF 177 (250)
T PF02191_consen 101 VVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT--SYPKRSA-GNAF 177 (250)
T ss_pred EEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEe--ccCchhh-ccee
Confidence 6533334333222 23333345566664433222223455667765 35754 3333333 3355
Q ss_pred EECCEEEEEecCCCCCccceEEEEeCCCCCEEECC-CCCCCCcceEEEEE---CCEEEEEc
Q psy17309 647 AYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP-DMYNPRSNFAIEVI---DDMIFAIG 703 (824)
Q Consensus 647 ~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~---~~~i~v~G 703 (824)
.+-|.||++...+... ..-.+.||+.+++=..+. +++.+-...++... +.+||+.-
T Consensus 178 mvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 178 MVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred eEeeEEEEEEECCCCC-cEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEE
Confidence 6679999998765433 334579999987765443 23334444555554 67888873
No 79
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=95.20 E-value=1.2 Score=43.49 Aligned_cols=143 Identities=17% Similarity=0.185 Sum_probs=76.5
Q ss_pred EEEECCEEEEEecccCCCCCCeEEEEeCCCCcE--Eee----cCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEE
Q psy17309 551 TAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQW--SLI----APMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVY 623 (824)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W--~~~----~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~y 623 (824)
++...+.+|+|-| +.+|+++...... ..+ +.+|.. ...+.... ++++|+|-| +..++|
T Consensus 12 ~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~~-IDAa~~~~~~~~~yfFkg-------~~yw~~ 76 (194)
T cd00094 12 VTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPSP-VDAAFERPDTGKIYFFKG-------DKYWVY 76 (194)
T ss_pred EEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCCC-ccEEEEECCCCEEEEECC-------CEEEEE
Confidence 3445699999987 5678887652211 112 223321 12222222 389999977 456777
Q ss_pred eCCCCeEE---EcC--CCCC--CCcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEEE-----C----CCCCCC
Q psy17309 624 DPECNQWT---LIE--PMRH--RRSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQ-----V----PDMYNP 686 (824)
Q Consensus 624 d~~~~~W~---~~~--~~p~--~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-----~----~~~p~~ 686 (824)
|..+..+. .+. .+|. ....++...- ++++|++.| +..++||...++-.. + ..+|..
T Consensus 77 ~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~ 149 (194)
T cd00094 77 TGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGVPDK 149 (194)
T ss_pred cCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCcCCC
Confidence 75542211 111 1121 1122222222 689999998 577888876554321 1 122221
Q ss_pred CcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 687 RSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 687 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
..++...-++++|++-|. ..++||..+.+
T Consensus 150 -idaa~~~~~~~~yfF~g~-------~y~~~d~~~~~ 178 (194)
T cd00094 150 -VDAAFRWLDGYYYFFKGD-------QYWRFDPRSKE 178 (194)
T ss_pred -cceeEEeCCCcEEEEECC-------EEEEEeCccce
Confidence 222232334899999774 78999988765
No 80
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.19 E-value=4.5 Score=46.00 Aligned_cols=118 Identities=13% Similarity=0.200 Sum_probs=66.6
Q ss_pred EEEEECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCC----Cc-ceEEEEEEC-CEEEEEecccCCCCCCeEE
Q psy17309 503 GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNF----KR-CYVSTAVHQ-DVIYAMGGYNGQRRQNSVE 574 (824)
Q Consensus 503 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~----~r-~~~~~~~~~-~~iyv~GG~~~~~~~~~~~ 574 (824)
+-++.++.+|+.... ..++++|..+++ |+.-...+. +. ....++..+ +.||+... ...+.
T Consensus 56 sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------~g~v~ 123 (488)
T cd00216 56 TPLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------DGRLV 123 (488)
T ss_pred CCEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------CCeEE
Confidence 345668999986542 568999998765 875332220 00 111234456 78887532 25789
Q ss_pred EEeCCCCc--EEeecCCCc---ccCceEEEEECCEEEEEcccCCC----CcCCceEEEeCCCCe--EEEc
Q psy17309 575 KYNYTENQ--WSLIAPMNV---ERSDASATTLQGKIYITGGFNGH----NCLNSCEVYDPECNQ--WTLI 633 (824)
Q Consensus 575 ~yd~~t~~--W~~~~~~p~---~r~~~~~~~~~~~lyv~GG~~~~----~~~~~v~~yd~~~~~--W~~~ 633 (824)
.+|..|.+ |+.-..-+. .....+.++.++.+|+ |..+.. .....++++|.+|++ |+.-
T Consensus 124 AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 124 ALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred EEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEee
Confidence 99988754 875432211 0012233455676665 432211 123578999998765 8753
No 81
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=95.14 E-value=1.2 Score=43.67 Aligned_cols=142 Identities=13% Similarity=0.149 Sum_probs=78.3
Q ss_pred EEEECCEEEEEeecCCCcccceEEEEECCCCce--EEec----cCCCCcceEEEEEEC-CEEEEEecccCCCCCCeEEEE
Q psy17309 504 TAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVW--KEIA----PMNFKRCYVSTAVHQ-DVIYAMGGYNGQRRQNSVEKY 576 (824)
Q Consensus 504 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W--~~~~----~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~y 576 (824)
+....+.+|+|-| +.+|+++...... ..+. .+|. ....+..... +++|+|-| +..|+|
T Consensus 12 ~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg-------~~yw~~ 76 (194)
T cd00094 12 VTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKG-------DKYWVY 76 (194)
T ss_pred EEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECC-------CEEEEE
Confidence 4444688999987 5678887652211 1121 1221 2222333223 89999987 578888
Q ss_pred eCCCCcEE---eecCCCccc--CceEEE-EE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEc---------CCCCCC
Q psy17309 577 NYTENQWS---LIAPMNVER--SDASAT-TL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLI---------EPMRHR 639 (824)
Q Consensus 577 d~~t~~W~---~~~~~p~~r--~~~~~~-~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~---------~~~p~~ 639 (824)
+..+..+. .+...+.+. ....++ .. ++++|++.| +..++||..+++...- ..+|..
T Consensus 77 ~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~ 149 (194)
T cd00094 77 TGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGVPDK 149 (194)
T ss_pred cCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCcCCC
Confidence 87653221 111111111 212222 22 689999988 4567787655543211 122221
Q ss_pred CcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCC
Q psy17309 640 RSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 640 r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 676 (824)
. -++... ++++|++-| +..++||..+.+
T Consensus 150 -i-daa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 150 -V-DAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred -c-ceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 2 233334 489999998 588999988765
No 82
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.11 E-value=7.3 Score=44.62 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=69.1
Q ss_pred EEEECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCCC--------cceEEEEEECCEEEEEecccCCCCCCeE
Q psy17309 504 TAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNFK--------RCYVSTAVHQDVIYAMGGYNGQRRQNSV 573 (824)
Q Consensus 504 ~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 573 (824)
-++.++.||+... ...++++|..+++ |+.-...+.. ....++++.+++||+... ...+
T Consensus 65 Pvv~~g~vyv~s~------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------dg~l 132 (527)
T TIGR03075 65 PLVVDGVMYVTTS------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------DARL 132 (527)
T ss_pred CEEECCEEEEECC------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC------CCEE
Confidence 3556899998654 2468999998865 8754432211 111234667888887432 2468
Q ss_pred EEEeCCCCc--EEeec-CCCcc-cCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCe--EEEc
Q psy17309 574 EKYNYTENQ--WSLIA-PMNVE-RSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQ--WTLI 633 (824)
Q Consensus 574 ~~yd~~t~~--W~~~~-~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~ 633 (824)
..+|..|.+ |+.-. ..... ....+-++.+++||+-...........+..||.++++ |+.-
T Consensus 133 ~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 133 VALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred EEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 999998875 76532 22211 1122334568888774322111234578899998875 7643
No 83
>KOG2055|consensus
Probab=95.08 E-value=1.6 Score=46.49 Aligned_cols=183 Identities=12% Similarity=0.160 Sum_probs=105.0
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEE--EECCE-EEEEecccCCCCCCeEEEEeCCCCcEE
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTA--VHQDV-IYAMGGYNGQRRQNSVEKYNYTENQWS 584 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~--~~~~~-iyv~GG~~~~~~~~~~~~yd~~t~~W~ 584 (824)
.-.+.+++|.++. -.++..|-.+|. .+.++...+.-...+ .-+|. ..+++|. -.-++.||..+.+-+
T Consensus 224 ~~plllvaG~d~~---lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r-----rky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR-----RKYLYSYDLETAKVT 293 (514)
T ss_pred CCceEEEecCCCc---EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc-----ceEEEEeeccccccc
Confidence 5678888987653 345556666655 344433222221111 12444 7777774 355889999999888
Q ss_pred eecCCCc--ccCce-EEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCC
Q psy17309 585 LIAPMNV--ERSDA-SATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGM 661 (824)
Q Consensus 585 ~~~~~p~--~r~~~-~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 661 (824)
++.++-. .+.-+ -.+..++.+.++-|..+ .++.....|+.|..--.++......+....+..||+.||.
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~--- 365 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT--- 365 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEcccCc-----eEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC---
Confidence 8765421 12222 23344566777777553 5677777888885433444333333334445678888885
Q ss_pred CccceEEEEeCCCCC----EEECCCCCCCCcceE-EEEECCEEEEEccCCCCceeeEEEEEECC
Q psy17309 662 SRMCNGEKYNPVTKT----WSQVPDMYNPRSNFA-IEVIDDMIFAIGGFNGVTTIYHVECYDEK 720 (824)
Q Consensus 662 ~~~~~v~~yd~~~~~----W~~~~~~p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 720 (824)
..|+++|+..+. |..-+.. .+-+ +...++..+.+|-..+ -|-+||-+
T Consensus 366 ---GeV~v~nl~~~~~~~rf~D~G~v----~gts~~~S~ng~ylA~GS~~G-----iVNIYd~~ 417 (514)
T KOG2055|consen 366 ---GEVYVWNLRQNSCLHRFVDDGSV----HGTSLCISLNGSYLATGSDSG-----IVNIYDGN 417 (514)
T ss_pred ---ceEEEEecCCcceEEEEeecCcc----ceeeeeecCCCceEEeccCcc-----eEEEeccc
Confidence 489999998763 5443332 2222 3345777666664333 35677744
No 84
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.96 E-value=0.19 Score=50.62 Aligned_cols=152 Identities=18% Similarity=0.148 Sum_probs=97.8
Q ss_pred EEEE-ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCC
Q psy17309 550 STAV-HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECN 628 (824)
Q Consensus 550 ~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 628 (824)
+... .+|.+|.--|.-+. +.+.++|+.+++-....++|..-.+=+++.++++||..-=. .....+||+.+
T Consensus 49 GL~~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk-----~~~~f~yd~~t- 119 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK-----EGTGFVYDPNT- 119 (264)
T ss_dssp EEEEEETTEEEEEECSTTE---EEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS-----SSEEEEEETTT-
T ss_pred cEEecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec-----CCeEEEEcccc-
Confidence 3455 57899998886553 67899999999987778899888889999999999998432 35678999876
Q ss_pred eEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceE------EEEECCEEEEE
Q psy17309 629 QWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFA------IEVIDDMIFAI 702 (824)
Q Consensus 629 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~------~~~~~~~i~v~ 702 (824)
.+.+...+.+..+.+.+..+..|++.-|. +.++..||++-+=.. .+.....+.. +-.++|+||.=
T Consensus 120 -l~~~~~~~y~~EGWGLt~dg~~Li~SDGS------~~L~~~dP~~f~~~~--~i~V~~~g~pv~~LNELE~i~G~IyAN 190 (264)
T PF05096_consen 120 -LKKIGTFPYPGEGWGLTSDGKRLIMSDGS------SRLYFLDPETFKEVR--TIQVTDNGRPVSNLNELEYINGKIYAN 190 (264)
T ss_dssp -TEEEEEEE-SSS--EEEECSSCEEEE-SS------SEEEEE-TTT-SEEE--EEE-EETTEE---EEEEEEETTEEEEE
T ss_pred -ceEEEEEecCCcceEEEcCCCEEEEECCc------cceEEECCcccceEE--EEEEEECCEECCCcEeEEEEcCEEEEE
Confidence 45666666677889999888899998884 689999997533211 1111111111 12235555442
Q ss_pred ccCCCCceeeEEEEEECCCCcE
Q psy17309 703 GGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 703 GG~~~~~~~~~v~~yd~~~~~W 724 (824)
--..+.|.+.||+++.=
T Consensus 191 -----VW~td~I~~Idp~tG~V 207 (264)
T PF05096_consen 191 -----VWQTDRIVRIDPETGKV 207 (264)
T ss_dssp -----ETTSSEEEEEETTT-BE
T ss_pred -----eCCCCeEEEEeCCCCeE
Confidence 11346788999999853
No 85
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=94.86 E-value=0.019 Score=58.80 Aligned_cols=82 Identities=12% Similarity=0.241 Sum_probs=62.6
Q ss_pred ccceeEEe-eecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHHHHHHhhcCCcchHHHHHHHHHHcCCH
Q psy17309 244 RQNSVEKY-NYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCK 322 (824)
Q Consensus 244 ~~~~i~l~-~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c~~~l~~~l~~~N~~~i~~~a~~~~~~ 322 (824)
+..+|+|. ..+-.+|+=|++|+....-.++.+||..||..|++|||+.|++.|..|+.+
T Consensus 43 ~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~-------------------- 102 (317)
T PF11822_consen 43 RWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLVEECLQYCHD-------------------- 102 (317)
T ss_pred cCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHHHHHHHHHHH--------------------
Confidence 33456665 456788999999999988899999999999999999999988888776654
Q ss_pred HHHHHHHHHHHHHHHHHHcCchhhhcCCHHHHHHH
Q psy17309 323 KLEEWTRKYILRNFVDVARESEEIVFISEQELEEI 357 (824)
Q Consensus 323 ~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~l 357 (824)
|+.+|....-++..|+.+.+..|
T Consensus 103 ------------~~~~Iv~~~~nl~Cl~~~Ll~RL 125 (317)
T PF11822_consen 103 ------------HMSEIVASPCNLNCLNDNLLTRL 125 (317)
T ss_pred ------------hHHHHHcCCCCcccCCHHHHHHH
Confidence 45555555556666776666665
No 86
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.83 E-value=5.2 Score=40.62 Aligned_cols=224 Identities=10% Similarity=0.087 Sum_probs=100.1
Q ss_pred EEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEe
Q psy17309 461 ILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEI 539 (824)
Q Consensus 461 ~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 539 (824)
.++++|+. ...+..||..+.+-... .... ......+... ++..+++|+.+ ..+..||..+++....
T Consensus 22 ~~l~~~~~-----~g~i~i~~~~~~~~~~~--~~~~-~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~~~~~~~~~~~ 88 (289)
T cd00200 22 KLLATGSG-----DGTIKVWDLETGELLRT--LKGH-TGPVRDVAASADGTYLASGSSD-----KTIRLWDLETGECVRT 88 (289)
T ss_pred CEEEEeec-----CcEEEEEEeeCCCcEEE--EecC-CcceeEEEECCCCCEEEEEcCC-----CeEEEEEcCcccceEE
Confidence 44555543 34577777766542211 0000 0111122223 44466666643 4688888887532211
Q ss_pred ccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC-CEEEEEcccCCCCcC
Q psy17309 540 APMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ-GKIYITGGFNGHNCL 617 (824)
Q Consensus 540 ~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~ 617 (824)
-... ...-.++... ++.+++.|+. ...+..||+.+.+-...-. .....-.++.... +.+++.|+.+
T Consensus 89 ~~~~-~~~i~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~----- 156 (289)
T cd00200 89 LTGH-TSYVSSVAFSPDGRILSSSSR-----DKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQD----- 156 (289)
T ss_pred Eecc-CCcEEEEEEcCCCCEEEEecC-----CCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEEcCC-----
Confidence 1111 1112223333 3466666652 2568889987544322111 1111122233333 4555444323
Q ss_pred CceEEEeCCCCeEEEcCCCCCCC-cceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE
Q psy17309 618 NSCEVYDPECNQWTLIEPMRHRR-SGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI 695 (824)
Q Consensus 618 ~~v~~yd~~~~~W~~~~~~p~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 695 (824)
..+..||..+.+- +..+.... .-.++... +++.+++++.+ ..+..||..+.+....-. .....-.++...
T Consensus 157 ~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~ 228 (289)
T cd00200 157 GTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSSD-----GTIKLWDLSTGKCLGTLR-GHENGVNSVAFS 228 (289)
T ss_pred CcEEEEEcccccc--ceeEecCccccceEEECCCcCEEEEecCC-----CcEEEEECCCCceecchh-hcCCceEEEEEc
Confidence 4688888865431 11111111 11122222 34455555542 468889987643322210 111112223333
Q ss_pred -CCEEEEEccCCCCceeeEEEEEECCCC
Q psy17309 696 -DDMIFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 696 -~~~i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
++.+++.|+.++ .+.+||..+.
T Consensus 229 ~~~~~~~~~~~~~-----~i~i~~~~~~ 251 (289)
T cd00200 229 PDGYLLASGSEDG-----TIRVWDLRTG 251 (289)
T ss_pred CCCcEEEEEcCCC-----cEEEEEcCCc
Confidence 356666665333 5788887753
No 87
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.60 E-value=9.1 Score=42.98 Aligned_cols=191 Identities=9% Similarity=-0.075 Sum_probs=97.4
Q ss_pred cceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC
Q psy17309 523 YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 602 (824)
Q Consensus 523 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 602 (824)
...++..|.....-+.+...+.+-. .....-+|+-.++..... ....++.+|+.+.+-+.+...+..-... ...-+
T Consensus 197 ~~~l~i~d~dG~~~~~l~~~~~~~~-~p~wSPDG~~La~~s~~~--g~~~L~~~dl~tg~~~~lt~~~g~~~~~-~wSPD 272 (448)
T PRK04792 197 PYQLMIADYDGYNEQMLLRSPEPLM-SPAWSPDGRKLAYVSFEN--RKAEIFVQDIYTQVREKVTSFPGINGAP-RFSPD 272 (448)
T ss_pred ceEEEEEeCCCCCceEeecCCCccc-CceECCCCCEEEEEEecC--CCcEEEEEECCCCCeEEecCCCCCcCCe-eECCC
Confidence 4567777766544443332221111 111222443333322211 1357999999988877776554322221 12224
Q ss_pred C-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECC-EEEEEecCCCCCccceEEEEeCCCCCEEEC
Q psy17309 603 G-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHE-CIYVIGGFNGMSRMCNGEKYNPVTKTWSQV 680 (824)
Q Consensus 603 ~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (824)
| +|++....++ ...++.+|..+++.+.+..-...-.. ....-++ .|++.....+ ...++.+|+.+.+++.+
T Consensus 273 G~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~~~~~~-p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 273 GKKLALVLSKDG---QPEIYVVDIATKALTRITRHRAIDTE-PSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRL 345 (448)
T ss_pred CCEEEEEEeCCC---CeEEEEEECCCCCeEECccCCCCccc-eEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEE
Confidence 4 4655433222 25789999999888777542211111 1122244 4554432222 25799999999988877
Q ss_pred CCCCCCCcceEEEEECC-EEEEEccCCCCceeeEEEEEECCCCcEEecc
Q psy17309 681 PDMYNPRSNFAIEVIDD-MIFAIGGFNGVTTIYHVECYDEKTDEWYEAT 728 (824)
Q Consensus 681 ~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (824)
..-. .........-++ .|++.+ .... ...++++|++++..+.+.
T Consensus 346 t~~g-~~~~~~~~SpDG~~l~~~~-~~~g--~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 346 TFEG-EQNLGGSITPDGRSMIMVN-RTNG--KFNIARQDLETGAMQVLT 390 (448)
T ss_pred ecCC-CCCcCeeECCCCCEEEEEE-ecCC--ceEEEEEECCCCCeEEcc
Confidence 4211 111111222244 555543 3222 237899999998887764
No 88
>PRK13684 Ycf48-like protein; Provisional
Probab=94.54 E-value=8 Score=41.45 Aligned_cols=214 Identities=10% Similarity=0.101 Sum_probs=105.5
Q ss_pred CCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEeccC-CCCcceEEEEEE-CCEEEE
Q psy17309 483 RADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPM-NFKRCYVSTAVH-QDVIYA 560 (824)
Q Consensus 483 ~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~r~~~~~~~~-~~~iyv 560 (824)
.-.+|.++............++...++..++.|.. ..+++=+-.-.+|+.+... ..+.....+..+ ++.+++
T Consensus 74 gG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G~~------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~ 147 (334)
T PRK13684 74 GGETWEERSLDLPEENFRLISISFKGDEGWIVGQP------SLLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEM 147 (334)
T ss_pred CCCCceECccCCcccccceeeeEEcCCcEEEeCCC------ceEEEECCCCCCCeEccCCcCCCCCceEEEEECCCccee
Confidence 44679885332111112223344445566666521 2244433334689987532 122222334344 345666
Q ss_pred EecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEE-EeCCCCeEEEcCCCCCC
Q psy17309 561 MGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEV-YDPECNQWTLIEPMRHR 639 (824)
Q Consensus 561 ~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~-yd~~~~~W~~~~~~p~~ 639 (824)
.|.. ..+++=+-.-.+|+.+..... -..+.+....+..+++.|..+ .++. .|....+|+.+.. +..
T Consensus 148 ~g~~------G~i~~S~DgG~tW~~~~~~~~-g~~~~i~~~~~g~~v~~g~~G-----~i~~s~~~gg~tW~~~~~-~~~ 214 (334)
T PRK13684 148 ATNV------GAIYRTTDGGKNWEALVEDAA-GVVRNLRRSPDGKYVAVSSRG-----NFYSTWEPGQTAWTPHQR-NSS 214 (334)
T ss_pred eecc------ceEEEECCCCCCceeCcCCCc-ceEEEEEECCCCeEEEEeCCc-----eEEEEcCCCCCeEEEeeC-CCc
Confidence 6542 345554546679998754332 233444444444444444332 2222 2444567998854 333
Q ss_pred CcceEEEEE-CCEEEEEecCCCCCccceEEEE--eCCCCCEEECCCC-CCC-CcceEEEEE-CCEEEEEccCCCCceeeE
Q psy17309 640 RSGVSCIAY-HECIYVIGGFNGMSRMCNGEKY--NPVTKTWSQVPDM-YNP-RSNFAIEVI-DDMIFAIGGFNGVTTIYH 713 (824)
Q Consensus 640 r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~y--d~~~~~W~~~~~~-p~~-r~~~~~~~~-~~~i~v~GG~~~~~~~~~ 713 (824)
+.-.+++.. +++++++|... ...+ +-.-.+|+.+... ... ...++++.. ++.++++|... .
T Consensus 215 ~~l~~i~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G------~ 281 (334)
T PRK13684 215 RRLQSMGFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG------T 281 (334)
T ss_pred ccceeeeEcCCCCEEEEecCC-------EEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCC------e
Confidence 444444443 68888887531 2234 2234589976421 111 112333333 66788887542 2
Q ss_pred EEEEECCCCcEEecc
Q psy17309 714 VECYDEKTDEWYEAT 728 (824)
Q Consensus 714 v~~yd~~~~~W~~~~ 728 (824)
+..-...-.+|+.+.
T Consensus 282 v~~S~d~G~tW~~~~ 296 (334)
T PRK13684 282 LLVSKDGGKTWEKDP 296 (334)
T ss_pred EEEeCCCCCCCeECC
Confidence 333333456899874
No 89
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.43 E-value=9.4 Score=42.62 Aligned_cols=147 Identities=14% Similarity=0.020 Sum_probs=80.5
Q ss_pred CeEEEEeCCCCcEEeecCCCcccCceEEEEECC-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEEC
Q psy17309 571 NSVEKYNYTENQWSLIAPMNVERSDASATTLQG-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYH 649 (824)
Q Consensus 571 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 649 (824)
..++++|+.+++-+.+...+..-.. ....-+| +|++....++ ..+++.+|..+...+.+..-+..-... ...-+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~-~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~~~~-~~spD 297 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGA-PAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNHPAIDTEP-FWGKD 297 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCC-eEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccCCCCcCCe-EECCC
Confidence 5799999999887777654422111 1112244 4544322222 257899999999888775432211111 12224
Q ss_pred C-EEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE-CCEEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 650 E-CIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI-DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 650 ~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
+ +|++.....+ ...++.+|..+.+++.+.... .........- ++.|++....++ ...++++|+.++..+.+
T Consensus 298 g~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~---~~~l~~~dl~tg~~~~l 370 (430)
T PRK00178 298 GRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDG---NFHVAAQDLQRGSVRIL 370 (430)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCC---ceEEEEEECCCCCEEEc
Confidence 4 5555432221 357899999888887764221 1111111222 445555543222 23689999999888877
Q ss_pred cC
Q psy17309 728 TD 729 (824)
Q Consensus 728 ~~ 729 (824)
..
T Consensus 371 t~ 372 (430)
T PRK00178 371 TD 372 (430)
T ss_pred cC
Confidence 43
No 90
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.41 E-value=0.68 Score=46.73 Aligned_cols=152 Identities=14% Similarity=0.071 Sum_probs=97.3
Q ss_pred EEEE-ECCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCC
Q psy17309 503 GTAV-IGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTEN 581 (824)
Q Consensus 503 ~~~~-~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 581 (824)
+... .++.+|..-|.-+. +.+..+|+.+++-....++|..-.+=+++.++++||..-= .....++||+.+
T Consensus 49 GL~~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTW-----k~~~~f~yd~~t- 119 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTW-----KEGTGFVYDPNT- 119 (264)
T ss_dssp EEEEEETTEEEEEECSTTE---EEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEES-----SSSEEEEEETTT-
T ss_pred cEEecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEe-----cCCeEEEEcccc-
Confidence 4555 47899998887553 7889999999998877788877777889999999999842 235789999976
Q ss_pred cEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEE-cC----CCCCCCcceEEEEECCEEEEEe
Q psy17309 582 QWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTL-IE----PMRHRRSGVSCIAYHECIYVIG 656 (824)
Q Consensus 582 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~----~~p~~r~~~~~~~~~~~iyv~G 656 (824)
.+.+...+.+..+-+++.-+..|++.-| .+.++..||++-+=.. +. ..|..+ ---.-.++|.||.==
T Consensus 120 -l~~~~~~~y~~EGWGLt~dg~~Li~SDG------S~~L~~~dP~~f~~~~~i~V~~~g~pv~~-LNELE~i~G~IyANV 191 (264)
T PF05096_consen 120 -LKKIGTFPYPGEGWGLTSDGKRLIMSDG------SSRLYFLDPETFKEVRTIQVTDNGRPVSN-LNELEYINGKIYANV 191 (264)
T ss_dssp -TEEEEEEE-SSS--EEEECSSCEEEE-S------SSEEEEE-TTT-SEEEEEE-EETTEE----EEEEEEETTEEEEEE
T ss_pred -ceEEEEEecCCcceEEEcCCCEEEEECC------ccceEEECCcccceEEEEEEEECCEECCC-cEeEEEEcCEEEEEe
Confidence 4566666666788888877888888776 3678899998643221 11 111111 111233466665421
Q ss_pred cCCCCCccceEEEEeCCCCC
Q psy17309 657 GFNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 657 G~~~~~~~~~v~~yd~~~~~ 676 (824)
-..+.|.+-||+++.
T Consensus 192 -----W~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 192 -----WQTDRIVRIDPETGK 206 (264)
T ss_dssp -----TTSSEEEEEETTT-B
T ss_pred -----CCCCeEEEEeCCCCe
Confidence 125788999999986
No 91
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.13 E-value=2.2 Score=45.49 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=86.0
Q ss_pred CEEEEEeccc--CC--CCC-CeEEEEeCCCC-----cEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeC
Q psy17309 556 DVIYAMGGYN--GQ--RRQ-NSVEKYNYTEN-----QWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDP 625 (824)
Q Consensus 556 ~~iyv~GG~~--~~--~~~-~~~~~yd~~t~-----~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~ 625 (824)
...+++|..- +. ... ..+..|+.... +++.+......-.-.+++.++++|.+.-| +.+..|+.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l 114 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDL 114 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-------TEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-------CEEEEEEc
Confidence 3566666432 11 122 67889998885 66666555554446677778999777655 57888888
Q ss_pred CCCe-EEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE-CCEEEEEc
Q psy17309 626 ECNQ-WTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI-DDMIFAIG 703 (824)
Q Consensus 626 ~~~~-W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~G 703 (824)
..++ +...+.+..+-...+..+.++.|++---.. .-.+..|+.+..+-..++.-+.++...++..+ ++..++++
T Consensus 115 ~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~----sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 115 DNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMK----SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp ETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSS----SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE
T ss_pred cCcccchhhheecceEEEEEEeccccEEEEEEccc----CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE
Confidence 8888 888876666556666677788666543221 13455778766667777665567777777777 66544443
No 92
>PRK04922 tolB translocation protein TolB; Provisional
Probab=94.12 E-value=10 Score=42.39 Aligned_cols=146 Identities=16% Similarity=0.075 Sum_probs=80.0
Q ss_pred CCeEEEEeCCCCcEEeecCCCcccCceEEEEECC-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE
Q psy17309 570 QNSVEKYNYTENQWSLIAPMNVERSDASATTLQG-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY 648 (824)
Q Consensus 570 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 648 (824)
...++++|..+++-+.+...+.... .....-+| +|++....++ ..+++.+|+.++.-+.+..-+...... ...-
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~~~~~~~~-~~sp 301 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNHFGIDTEP-TWAP 301 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccCCCCccce-EECC
Confidence 3579999999888877766543221 11222244 5554433222 257999999988776664322111111 2222
Q ss_pred CCE-EEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEE-EE-CCEEEEEccCCCCceeeEEEEEECCCCcEE
Q psy17309 649 HEC-IYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIE-VI-DDMIFAIGGFNGVTTIYHVECYDEKTDEWY 725 (824)
Q Consensus 649 ~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (824)
+++ |+......+ ...++.+|..+.+.+.+..- ........ .- +.+|++..+.++ ...++++|+.++..+
T Consensus 302 DG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~~~~~~---~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 302 DGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQ--GNYNARASVSPDGKKIAMVHGSGG---QYRIAVMDLSTGSVR 373 (433)
T ss_pred CCCEEEEEECCCC---CceEEEEECCCCCeEEeecC--CCCccCEEECCCCCEEEEEECCCC---ceeEEEEECCCCCeE
Confidence 454 444432221 25789999988888776421 11221222 22 445555544221 237899999998888
Q ss_pred ecc
Q psy17309 726 EAT 728 (824)
Q Consensus 726 ~~~ 728 (824)
.+.
T Consensus 374 ~Lt 376 (433)
T PRK04922 374 TLT 376 (433)
T ss_pred ECC
Confidence 764
No 93
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.11 E-value=6.5 Score=39.87 Aligned_cols=185 Identities=11% Similarity=0.071 Sum_probs=83.3
Q ss_pred CEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeec
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIA 587 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~ 587 (824)
+.++++|+.+ ..+..||..+++-........... ..+... ++..+++|+. ...+.+||..+.+...
T Consensus 21 ~~~l~~~~~~-----g~i~i~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~-----~~~i~i~~~~~~~~~~-- 87 (289)
T cd00200 21 GKLLATGSGD-----GTIKVWDLETGELLRTLKGHTGPV-RDVAASADGTYLASGSS-----DKTIRLWDLETGECVR-- 87 (289)
T ss_pred CCEEEEeecC-----cEEEEEEeeCCCcEEEEecCCcce-eEEEECCCCCEEEEEcC-----CCeEEEEEcCcccceE--
Confidence 3455566532 457778877654211111111111 122222 4446666664 2568888887753211
Q ss_pred CCCccc-CceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEEC-CEEEEEecCCCCCcc
Q psy17309 588 PMNVER-SDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYH-ECIYVIGGFNGMSRM 664 (824)
Q Consensus 588 ~~p~~r-~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~ 664 (824)
.+.... .-.++... ++.+++.|+.+ ..+..||+.+.+-...-. .....-.++.... +.+++.|+.+
T Consensus 88 ~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~----- 156 (289)
T cd00200 88 TLTGHTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQD----- 156 (289)
T ss_pred EEeccCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEEcCC-----
Confidence 111111 11222222 34666666533 468889987554322211 1111112223333 4555554422
Q ss_pred ceEEEEeCCCCCEEECCCCCCCC-cceEEEEE-CCEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 665 CNGEKYNPVTKTWSQVPDMYNPR-SNFAIEVI-DDMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 665 ~~v~~yd~~~~~W~~~~~~p~~r-~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
..+..||..+.+- +..+.... .-.++... +++.+++|+.++ .+.+||..+.+-
T Consensus 157 ~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~-----~i~i~d~~~~~~ 211 (289)
T cd00200 157 GTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSSDG-----TIKLWDLSTGKC 211 (289)
T ss_pred CcEEEEEcccccc--ceeEecCccccceEEECCCcCEEEEecCCC-----cEEEEECCCCce
Confidence 4678888864321 11111111 11122222 444555655433 578888876433
No 94
>smart00284 OLF Olfactomedin-like domains.
Probab=94.02 E-value=5.9 Score=40.03 Aligned_cols=182 Identities=12% Similarity=0.071 Sum_probs=101.1
Q ss_pred CEEEEEeecCCCcccceEEEEE----CCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEE
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFN----AVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWS 584 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd----~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~ 584 (824)
+++|++.+.. ...+.++.|. ....++...-.+|.+-.+.+.++++|.+|.--. ....+.+||+.+++-.
T Consensus 35 ~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~-----~s~~iiKydL~t~~v~ 107 (255)
T smart00284 35 SLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKF-----NSHDICRFDLTTETYQ 107 (255)
T ss_pred ceEEEEcccc--CCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEec-----CCccEEEEECCCCcEE
Confidence 6778876642 1124455553 234445444456777777888999999998643 2477999999999876
Q ss_pred eecCCCccc------------CceEEEEECCEEEEEcccCCCCcCCceEEEeCCCC----eEEEcCCCCCCCcceEEEEE
Q psy17309 585 LIAPMNVER------------SDASATTLQGKIYITGGFNGHNCLNSCEVYDPECN----QWTLIEPMRHRRSGVSCIAY 648 (824)
Q Consensus 585 ~~~~~p~~r------------~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~----~W~~~~~~p~~r~~~~~~~~ 648 (824)
....+|.+. ...-.++=++-|+|+=........-.+-+.||.+- +|.. ..+.+ ....+..+
T Consensus 108 ~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~k~-sa~naFmv 184 (255)
T smart00284 108 KEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT--TYNKR-SASNAFMI 184 (255)
T ss_pred EEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc--CCCcc-cccccEEE
Confidence 555555321 11223333444555522111111123456777653 5655 23332 22345566
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCC--CCCcceEEEEE---CCEEEEE
Q psy17309 649 HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMY--NPRSNFAIEVI---DDMIFAI 702 (824)
Q Consensus 649 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p--~~r~~~~~~~~---~~~i~v~ 702 (824)
-|.||++-... .....-.+.||+.+.+=.. ..+| .+...+++.-. +.+||+.
T Consensus 185 CGvLY~~~s~~-~~~~~I~yayDt~t~~~~~-~~i~f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 185 CGILYVTRSLG-SKGEKVFYAYDTNTGKEGH-LDIPFENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred eeEEEEEccCC-CCCcEEEEEEECCCCccce-eeeeeccccccceeceeCCCCCeEEEE
Confidence 79999996421 1122346799998876333 3333 33334444444 6788887
No 95
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.92 E-value=9.8 Score=41.51 Aligned_cols=225 Identities=13% Similarity=0.059 Sum_probs=110.8
Q ss_pred eEEEEECCCCc--EEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCCCcceEEE
Q psy17309 476 FVETYDTRADR--WVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNFKRCYVST 551 (824)
Q Consensus 476 ~~~~yd~~~~~--W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~ 551 (824)
.+..+|+.+.+ |...... ............+++||+-.. ++ .+++||..+++ |..-.... ++..-..
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~--~~~~~~~~~~~~~G~i~~g~~-~g-----~~y~ld~~~G~~~W~~~~~~~-~~~~~~~ 149 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLG--AVAQLSGPILGSDGKIYVGSW-DG-----KLYALDASTGTLVWSRNVGGS-PYYASPP 149 (370)
T ss_pred cEEEEeCCCCcEEecccCcC--cceeccCceEEeCCeEEEecc-cc-----eEEEEECCCCcEEEEEecCCC-eEEecCc
Confidence 68899999887 8652211 001111122222677665443 22 79999996554 87544332 3333344
Q ss_pred EEECCEEEEEecccCCCCCCeEEEEeCCCC--cEEeecCC-CcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCC
Q psy17309 552 AVHQDVIYAMGGYNGQRRQNSVEKYNYTEN--QWSLIAPM-NVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECN 628 (824)
Q Consensus 552 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~-p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 628 (824)
+..++.+|+.. ....++.+|..+. .|+.-.+. ...+.....+..++.+|+-.- + . ...++.+|++++
T Consensus 150 v~~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~-~--~-~~~~~a~~~~~G 219 (370)
T COG1520 150 VVGDGTVYVGT------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSD-G--Y-DGILYALNAEDG 219 (370)
T ss_pred EEcCcEEEEec------CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecC-C--C-cceEEEEEccCC
Confidence 55567777753 2356888888764 58754332 222222222355777776422 1 1 236889999766
Q ss_pred e--EEEcCCCCCCCcce--EEEEECCEEEEEecCCCCCccceEEEEeCCCC--CEEECCCCCC---CCcceEEEEECCEE
Q psy17309 629 Q--WTLIEPMRHRRSGV--SCIAYHECIYVIGGFNGMSRMCNGEKYNPVTK--TWSQVPDMYN---PRSNFAIEVIDDMI 699 (824)
Q Consensus 629 ~--W~~~~~~p~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~---~r~~~~~~~~~~~i 699 (824)
+ |+.-...+..+..- ......+.||+-||.-.......+.++|..+. .|+.-..+.. +........-+|++
T Consensus 220 ~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v 299 (370)
T COG1520 220 TLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKV 299 (370)
T ss_pred cEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccE
Confidence 4 87533222222111 12233344444443111111234777877654 4776543211 11111222236777
Q ss_pred EEEccCCCCceeeEEEEEEC
Q psy17309 700 FAIGGFNGVTTIYHVECYDE 719 (824)
Q Consensus 700 ~v~GG~~~~~~~~~v~~yd~ 719 (824)
|+............+.+++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~ 319 (370)
T COG1520 300 YIGFTDNDGRGSGSLYALAD 319 (370)
T ss_pred EEEEeccccccccceEEEec
Confidence 77643322112234555553
No 96
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=93.82 E-value=11 Score=41.73 Aligned_cols=148 Identities=8% Similarity=-0.057 Sum_probs=81.3
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECC-EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 602 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 602 (824)
..++.+|..+++-..+...+...... ...-++ .|++.....+ ..+++.+|+.++..+.+...+...... ...-+
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~-~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~s~d 288 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAP-AFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNGPGIDTEP-SWSPD 288 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccce-EECCCCCEEEEEECCCC---CccEEEEECCCCCEEECCCCCCCCCCE-EECCC
Confidence 57999999988776665443222221 122244 5655443222 257899999988877765433221111 11224
Q ss_pred C-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECC
Q psy17309 603 G-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP 681 (824)
Q Consensus 603 ~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 681 (824)
+ +|++.....+ ...++.+|..+..++.+..-... .......-+++.+++..... ....++.+|+.+..++.+.
T Consensus 289 g~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~~~-~~~~~~spdg~~i~~~~~~~--~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 289 GKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRGGY-NASPSWSPDGDLIAFVHREG--GGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCEEEeecCCCC-ccCeEECCCCCEEEEEEccC--CceEEEEEeCCCCCeEEcc
Confidence 4 4444332222 24789999988887766432111 11112223566666654332 2357899999987777665
Q ss_pred C
Q psy17309 682 D 682 (824)
Q Consensus 682 ~ 682 (824)
.
T Consensus 363 ~ 363 (417)
T TIGR02800 363 D 363 (417)
T ss_pred C
Confidence 3
No 97
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.78 E-value=8.3 Score=38.79 Aligned_cols=234 Identities=12% Similarity=0.088 Sum_probs=125.8
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccC-CCCcceEEEEE
Q psy17309 476 FVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPM-NFKRCYVSTAV 553 (824)
Q Consensus 476 ~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~r~~~~~~~ 553 (824)
.+-.+||.+.+-..++...-..| |++++- ++..++.-+ ...+-++|+++..-++.+-. ..+-.+.-.++
T Consensus 84 aiGhLdP~tGev~~ypLg~Ga~P---hgiv~gpdg~~Witd~------~~aI~R~dpkt~evt~f~lp~~~a~~nlet~v 154 (353)
T COG4257 84 AIGHLDPATGEVETYPLGSGASP---HGIVVGPDGSAWITDT------GLAIGRLDPKTLEVTRFPLPLEHADANLETAV 154 (353)
T ss_pred cceecCCCCCceEEEecCCCCCC---ceEEECCCCCeeEecC------cceeEEecCcccceEEeecccccCCCccccee
Confidence 45567888888776654443333 333322 333333321 13688999988876665421 11222333445
Q ss_pred E--CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEE-ECCEEEEEcccCCCCcCCceEEEeCCCCeE
Q psy17309 554 H--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATT-LQGKIYITGGFNGHNCLNSCEVYDPECNQW 630 (824)
Q Consensus 554 ~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 630 (824)
+ .|.++..|-....+ ++||.++.-+..+. |..-.-.++|+ -+|.+|+.-= .-+-+-..||.+..=
T Consensus 155 fD~~G~lWFt~q~G~yG------rLdPa~~~i~vfpa-PqG~gpyGi~atpdGsvwyasl-----agnaiaridp~~~~a 222 (353)
T COG4257 155 FDPWGNLWFTGQIGAYG------RLDPARNVISVFPA-PQGGGPYGICATPDGSVWYASL-----AGNAIARIDPFAGHA 222 (353)
T ss_pred eCCCccEEEeeccccce------ecCcccCceeeecc-CCCCCCcceEECCCCcEEEEec-----cccceEEcccccCCc
Confidence 5 35787776432111 56777776554432 23333334444 3788887621 125567778877754
Q ss_pred EEcCCCCCC-CcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCC-CCCCCcceEEEEECCEEEEEccCC
Q psy17309 631 TLIEPMRHR-RSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPD-MYNPRSNFAIEVIDDMIFAIGGFN 706 (824)
Q Consensus 631 ~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~i~v~GG~~ 706 (824)
+.++. |.+ ..+.--+.. -+++++.- .....+++|||.+.+|.+-+- -..+|-..--+--.+++++.--
T Consensus 223 ev~p~-P~~~~~gsRriwsdpig~~witt-----wg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea-- 294 (353)
T COG4257 223 EVVPQ-PNALKAGSRRIWSDPIGRAWITT-----WGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEA-- 294 (353)
T ss_pred ceecC-CCcccccccccccCccCcEEEec-----cCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeecc--
Confidence 44432 222 111111212 36677652 123578999999999998752 2234433333333566776421
Q ss_pred CCceeeEEEEEECCCCcEEeccCCCCCccceeEEEEcC
Q psy17309 707 GVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMG 744 (824)
Q Consensus 707 ~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 744 (824)
..+.+.+|||++-+.+.+ |.+|-......+++
T Consensus 295 ---~agai~rfdpeta~ftv~---p~pr~n~gn~ql~g 326 (353)
T COG4257 295 ---DAGAIGRFDPETARFTVL---PIPRPNSGNIQLDG 326 (353)
T ss_pred ---ccCceeecCcccceEEEe---cCCCCCCCceeccC
Confidence 234689999999988886 34444444444443
No 98
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=93.59 E-value=7.8 Score=39.37 Aligned_cols=184 Identities=14% Similarity=0.188 Sum_probs=104.7
Q ss_pred CCCEEEEEccCCCCCCCceEEEEECC-----CCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECC
Q psy17309 458 PHEILFAIGGWSGGSPTDFVETYDTR-----ADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAV 532 (824)
Q Consensus 458 ~~~~l~~~GG~~~~~~~~~~~~yd~~-----~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~ 532 (824)
..+.++++.+.... .+..|.-. .++... .-.+|.+-.+.+.++.++.+|---. ..+.+.+||+.
T Consensus 29 ~~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~--~~~Lp~~~~GtG~vVYngslYY~~~-----~s~~IvkydL~ 97 (250)
T PF02191_consen 29 DSEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSR--TYKLPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDLT 97 (250)
T ss_pred CCCCEEEECccCCC----EEEEEcCHhHHhhcCCCce--EEEEeceeccCCeEEECCcEEEEec-----CCceEEEEECc
Confidence 45677777775443 44444321 111111 1223445566666777777776532 35789999999
Q ss_pred CCceEEeccCCCCc------------ceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCC----cEEeecCCCcccCce
Q psy17309 533 TKVWKEIAPMNFKR------------CYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTEN----QWSLIAPMNVERSDA 596 (824)
Q Consensus 533 ~~~W~~~~~~~~~r------------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~----~W~~~~~~p~~r~~~ 596 (824)
+++-..-..+|.+. ...-.++-.+-|+|+=........-.+-+.||.+- +|.. ..+.+..+.
T Consensus 98 t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T--~~~k~~~~n 175 (250)
T PF02191_consen 98 TRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT--SYPKRSAGN 175 (250)
T ss_pred CCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEe--ccCchhhcc
Confidence 98755222333221 12335666667777754433222234556777654 4653 344443333
Q ss_pred EEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcC-CCCCCCcceEEEEE---CCEEEEEe
Q psy17309 597 SATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIE-PMRHRRSGVSCIAY---HECIYVIG 656 (824)
Q Consensus 597 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~---~~~iyv~G 656 (824)
+.++-|.||++...+... ..-.+.||+.+++=..+. +++.+-..++++.+ +.+||+.-
T Consensus 176 -aFmvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 176 -AFMVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred -eeeEeeEEEEEEECCCCC-cEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEE
Confidence 556678999997765432 345578999988765543 44444556666665 57888875
No 99
>KOG0310|consensus
Probab=93.55 E-value=7.7 Score=41.90 Aligned_cols=214 Identities=20% Similarity=0.245 Sum_probs=106.7
Q ss_pred CCEEEEEccCCCCCCCceEEEEECCCCcEE-EcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceE
Q psy17309 459 HEILFAIGGWSGGSPTDFVETYDTRADRWV-KIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWK 537 (824)
Q Consensus 459 ~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~ 537 (824)
++.+++.|+.+ ..+..||.++..-- .+.....|..+ --....++.+++.|+-+ ..+-.+|..+..-
T Consensus 79 DG~LlaaGD~s-----G~V~vfD~k~r~iLR~~~ah~apv~~--~~f~~~d~t~l~s~sDd-----~v~k~~d~s~a~v- 145 (487)
T KOG0310|consen 79 DGRLLAAGDES-----GHVKVFDMKSRVILRQLYAHQAPVHV--TKFSPQDNTMLVSGSDD-----KVVKYWDLSTAYV- 145 (487)
T ss_pred CCeEEEccCCc-----CcEEEeccccHHHHHHHhhccCceeE--EEecccCCeEEEecCCC-----ceEEEEEcCCcEE-
Confidence 46788887643 45778885542110 11111122111 11223478899988733 2344455555442
Q ss_pred EeccCCCCc---ceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCEEEEEcccC
Q psy17309 538 EIAPMNFKR---CYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGKIYITGGFN 612 (824)
Q Consensus 538 ~~~~~~~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~ 612 (824)
...+...- ...++...+++|++.||+++ .+-.||..+.+ ..+..+.....--.++.+ +..|...||
T Consensus 146 -~~~l~~htDYVR~g~~~~~~~hivvtGsYDg-----~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgG-- 216 (487)
T KOG0310|consen 146 -QAELSGHTDYVRCGDISPANDHIVVTGSYDG-----KVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGG-- 216 (487)
T ss_pred -EEEecCCcceeEeeccccCCCeEEEecCCCc-----eEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCC--
Confidence 11221111 11223344788999999874 47778887763 223233222111123333 345556666
Q ss_pred CCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCC--CCCCc
Q psy17309 613 GHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDM--YNPRS 688 (824)
Q Consensus 613 ~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~--p~~r~ 688 (824)
+.+-++|..++.= .+..+..-....++..+ ++.=.+.||.+ ..|-+|| +..|+.+-.+ |.|..
T Consensus 217 -----n~vkVWDl~~G~q-ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD-----~~VKVfd--~t~~Kvv~s~~~~~pvL 283 (487)
T KOG0310|consen 217 -----NSVKVWDLTTGGQ-LLTSMFNHNKTVTCLRLASDSTRLLSGSLD-----RHVKVFD--TTNYKVVHSWKYPGPVL 283 (487)
T ss_pred -----CeEEEEEecCCce-ehhhhhcccceEEEEEeecCCceEeecccc-----cceEEEE--ccceEEEEeeeccccee
Confidence 6788888875542 22222211111122222 44556667764 3577888 4556666433 33332
Q ss_pred ceEEEEECCEEEEEccCCCC
Q psy17309 689 NFAIEVIDDMIFAIGGFNGV 708 (824)
Q Consensus 689 ~~~~~~~~~~i~v~GG~~~~ 708 (824)
..++ .-++.-.++|+.++.
T Consensus 284 siav-s~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 284 SIAV-SPDDQTVVIGMSNGL 302 (487)
T ss_pred eEEe-cCCCceEEEecccce
Confidence 2222 227788888887763
No 100
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=93.38 E-value=9 Score=37.97 Aligned_cols=159 Identities=15% Similarity=0.232 Sum_probs=81.1
Q ss_pred CceeEEEEECCEEEEEeecC--CCcccceEEEEE---CCCCceE--EeccCCC-------CcceEEEEEECCEEEEEecc
Q psy17309 499 RAYHGTAVIGYNIYVIGGFD--GNEYYNSCRCFN---AVTKVWK--EIAPMNF-------KRCYVSTAVHQDVIYAMGGY 564 (824)
Q Consensus 499 r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~yd---~~~~~W~--~~~~~~~-------~r~~~~~~~~~~~iyv~GG~ 564 (824)
-.++++.+++++||.+=-.. .+........|| ...+.|+ +++..+. .-.-|+.|.+++.=|++|=.
T Consensus 75 yHCmSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyH 154 (367)
T PF12217_consen 75 YHCMSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYH 154 (367)
T ss_dssp EE-B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEE
T ss_pred eeeeeeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEec
Confidence 45567888999999876421 222233445555 4567786 4444443 34568889999988999866
Q ss_pred cCCCCCCeEEE--EeCC----CCc-EEeec-CCCcccCceEEEEECCEEEEEc-ccCCCCcCCceEEEeCCCCeEEEcC-
Q psy17309 565 NGQRRQNSVEK--YNYT----ENQ-WSLIA-PMNVERSDASATTLQGKIYITG-GFNGHNCLNSCEVYDPECNQWTLIE- 634 (824)
Q Consensus 565 ~~~~~~~~~~~--yd~~----t~~-W~~~~-~~p~~r~~~~~~~~~~~lyv~G-G~~~~~~~~~v~~yd~~~~~W~~~~- 634 (824)
+++.....+=. |... ... =+.++ .....-+-.++-.++|.||+.- |......-..+.+-+.....|+.+.
T Consensus 155 nGD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrf 234 (367)
T PF12217_consen 155 NGDVSPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRF 234 (367)
T ss_dssp E-SSSS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-
T ss_pred cCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccc
Confidence 65544344322 2111 111 12222 2223333445556799999875 3333344466777777788899885
Q ss_pred CCCCCCcceEEEEECCEEEEEec
Q psy17309 635 PMRHRRSGVSCIAYHECIYVIGG 657 (824)
Q Consensus 635 ~~p~~r~~~~~~~~~~~iyv~GG 657 (824)
|-.........+.+++.||+||-
T Consensus 235 p~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 235 PNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp TT---SS---EEEETTEEEEEEE
T ss_pred cccccccCCCceeeCCEEEEEec
Confidence 22222344456788999999996
No 101
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.35 E-value=5.8 Score=39.85 Aligned_cols=182 Identities=13% Similarity=0.133 Sum_probs=98.7
Q ss_pred eEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEE
Q psy17309 476 FVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 553 (824)
Q Consensus 476 ~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 553 (824)
.|..+|+++..-+..+.+ ...+-.+.-.++. .+.|+..|-.. . -=++||.++.-+..+...-+--+-.++.
T Consensus 125 aI~R~dpkt~evt~f~lp-~~~a~~nlet~vfD~~G~lWFt~q~G---~---yGrLdPa~~~i~vfpaPqG~gpyGi~at 197 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLP-LEHADANLETAVFDPWGNLWFTGQIG---A---YGRLDPARNVISVFPAPQGGGPYGICAT 197 (353)
T ss_pred eeEEecCcccceEEeecc-cccCCCcccceeeCCCccEEEeeccc---c---ceecCcccCceeeeccCCCCCCcceEEC
Confidence 677788877766554332 1112222223333 45666666311 1 1167777776655543322222223444
Q ss_pred ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcc-cCceEEEE--ECCEEEEEcccCCCCcCCceEEEeCCCCeE
Q psy17309 554 HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVE-RSDASATT--LQGKIYITGGFNGHNCLNSCEVYDPECNQW 630 (824)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~-r~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 630 (824)
-+|.+|+..=. -+-+-+.||.+..=+.++ .|.+ ..+..-+. -.+++++.- .....+++|||.+.+|
T Consensus 198 pdGsvwyasla-----gnaiaridp~~~~aev~p-~P~~~~~gsRriwsdpig~~witt-----wg~g~l~rfdPs~~sW 266 (353)
T COG4257 198 PDGSVWYASLA-----GNAIARIDPFAGHAEVVP-QPNALKAGSRRIWSDPIGRAWITT-----WGTGSLHRFDPSVTSW 266 (353)
T ss_pred CCCcEEEEecc-----ccceEEcccccCCcceec-CCCcccccccccccCccCcEEEec-----cCCceeeEeCcccccc
Confidence 58888886211 145667788777444333 2222 11111111 246666651 1235789999999999
Q ss_pred EEcCCCCC--CCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECC
Q psy17309 631 TLIEPMRH--RRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP 681 (824)
Q Consensus 631 ~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 681 (824)
.+.+ +|. +|....-+--.|++++.-- ..+.+.+||+++.+.+.++
T Consensus 267 ~eyp-LPgs~arpys~rVD~~grVW~sea-----~agai~rfdpeta~ftv~p 313 (353)
T COG4257 267 IEYP-LPGSKARPYSMRVDRHGRVWLSEA-----DAGAIGRFDPETARFTVLP 313 (353)
T ss_pred eeee-CCCCCCCcceeeeccCCcEEeecc-----ccCceeecCcccceEEEec
Confidence 8875 343 3433322333477777421 1467899999999988864
No 102
>PRK13684 Ycf48-like protein; Provisional
Probab=93.35 E-value=13 Score=39.78 Aligned_cols=194 Identities=14% Similarity=0.145 Sum_probs=100.0
Q ss_pred CCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEe
Q psy17309 484 ADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMG 562 (824)
Q Consensus 484 ~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~G 562 (824)
..+|..+.... ..+.....+..+ ++.+++.|.. ..+++=+-.-.+|+.+..... -.-+.+....+..++..
T Consensus 118 G~tW~~~~~~~-~~~~~~~~i~~~~~~~~~~~g~~------G~i~~S~DgG~tW~~~~~~~~-g~~~~i~~~~~g~~v~~ 189 (334)
T PRK13684 118 GKNWTRIPLSE-KLPGSPYLITALGPGTAEMATNV------GAIYRTTDGGKNWEALVEDAA-GVVRNLRRSPDGKYVAV 189 (334)
T ss_pred CCCCeEccCCc-CCCCCceEEEEECCCcceeeecc------ceEEEECCCCCCceeCcCCCc-ceEEEEEECCCCeEEEE
Confidence 45798864321 112222333334 4456665531 345555556678998765432 23344544444444444
Q ss_pred cccCCCCCCeEEE-EeCCCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEe-C-CCCeEEEcCCCCC
Q psy17309 563 GYNGQRRQNSVEK-YNYTENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYD-P-ECNQWTLIEPMRH 638 (824)
Q Consensus 563 G~~~~~~~~~~~~-yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd-~-~~~~W~~~~~~p~ 638 (824)
|..+ .++. .|....+|+.+.. +..+.-.+++.. ++.++++|.. + ...+. . .-.+|+.+. .|.
T Consensus 190 g~~G-----~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~-G------~~~~~s~d~G~sW~~~~-~~~ 255 (334)
T PRK13684 190 SSRG-----NFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARG-G------QIRFNDPDDLESWSKPI-IPE 255 (334)
T ss_pred eCCc-----eEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecC-C------EEEEccCCCCCcccccc-CCc
Confidence 4222 2333 2445568988743 444555555444 6788888642 1 22332 2 234798754 231
Q ss_pred --C-CcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCC-CCCCcceEEEEE-CCEEEEEccC
Q psy17309 639 --R-RSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDM-YNPRSNFAIEVI-DDMIFAIGGF 705 (824)
Q Consensus 639 --~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~~~-~~~i~v~GG~ 705 (824)
. ...++++.. ++.+|+.|.. ..+..-.....+|+.+... ..+...+.++.. +++.|++|..
T Consensus 256 ~~~~~~l~~v~~~~~~~~~~~G~~------G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 256 ITNGYGYLDLAYRTPGEIWAGGGN------GTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred cccccceeeEEEcCCCCEEEEcCC------CeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCC
Confidence 1 122333333 5688888763 2334334455799998532 223344445544 7788888754
No 103
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.26 E-value=15 Score=40.10 Aligned_cols=152 Identities=16% Similarity=0.084 Sum_probs=85.6
Q ss_pred EEECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCC--
Q psy17309 505 AVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTE-- 580 (824)
Q Consensus 505 ~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t-- 580 (824)
+..++++|+... + ..++.+|+.+.+ |+.................+|+||+-.. ++ .+++||..+
T Consensus 65 ~~~dg~v~~~~~-~-----G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~-~g-----~~y~ld~~~G~ 132 (370)
T COG1520 65 ADGDGTVYVGTR-D-----GNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSW-DG-----KLYALDASTGT 132 (370)
T ss_pred EeeCCeEEEecC-C-----CcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecc-cc-----eEEEEECCCCc
Confidence 555888888621 1 269999999987 8653332001111112223788777543 22 789999954
Q ss_pred CcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCC--eEEEcCCC-CCCCcceEEEEECCEEEEEec
Q psy17309 581 NQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECN--QWTLIEPM-RHRRSGVSCIAYHECIYVIGG 657 (824)
Q Consensus 581 ~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG 657 (824)
..|+.-.+.. ++..-..++.++.+|+.- ....++++|..+. .|+.-.+. ...+.....+..++.+|+-..
T Consensus 133 ~~W~~~~~~~-~~~~~~~v~~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~ 205 (370)
T COG1520 133 LVWSRNVGGS-PYYASPPVVGDGTVYVGT------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSD 205 (370)
T ss_pred EEEEEecCCC-eEEecCcEEcCcEEEEec------CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecC
Confidence 4587654432 344444555577777653 1356888888765 48754332 122222222345666666532
Q ss_pred CCCCCccceEEEEeCCCC--CEEE
Q psy17309 658 FNGMSRMCNGEKYNPVTK--TWSQ 679 (824)
Q Consensus 658 ~~~~~~~~~v~~yd~~~~--~W~~ 679 (824)
+ . ...++.+|+.+. .|+.
T Consensus 206 -~--~-~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 206 -G--Y-DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred -C--C-cceEEEEEccCCcEeeee
Confidence 1 1 236889999765 4875
No 104
>PRK00178 tolB translocation protein TolB; Provisional
Probab=93.07 E-value=18 Score=40.43 Aligned_cols=181 Identities=7% Similarity=-0.053 Sum_probs=94.3
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECC-EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 602 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 602 (824)
..++++|+.+++-+.+...+..-. .....-+| +|++....++ ..+++++|..+...+.+..-+..-... ...-+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~~~~-~~spD 297 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNHPAIDTEP-FWGKD 297 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccCCCCcCCe-EECCC
Confidence 579999999988777665432111 11122244 4544332222 257999999999888775433211111 12224
Q ss_pred C-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEEC-CEEEEEecCCCCCccceEEEEeCCCCCEEEC
Q psy17309 603 G-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYH-ECIYVIGGFNGMSRMCNGEKYNPVTKTWSQV 680 (824)
Q Consensus 603 ~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (824)
+ +|+......+ ...++.+|..+++++.+.... .........-+ +.|++....++ ...++.+|+.+...+.+
T Consensus 298 g~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~---~~~l~~~dl~tg~~~~l 370 (430)
T PRK00178 298 GRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDG---NFHVAAQDLQRGSVRIL 370 (430)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCC---ceEEEEEECCCCCEEEc
Confidence 4 4554432221 357889999888887764221 11111122224 44555443221 34689999999888887
Q ss_pred CCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECC
Q psy17309 681 PDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEK 720 (824)
Q Consensus 681 ~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 720 (824)
..... .......-+++.+++....++ ...++..+..
T Consensus 371 t~~~~--~~~p~~spdg~~i~~~~~~~g--~~~l~~~~~~ 406 (430)
T PRK00178 371 TDTSL--DESPSVAPNGTMLIYATRQQG--RGVLMLVSIN 406 (430)
T ss_pred cCCCC--CCCceECCCCCEEEEEEecCC--ceEEEEEECC
Confidence 64321 111223335665555433222 1246666654
No 105
>PRK05137 tolB translocation protein TolB; Provisional
Probab=93.01 E-value=18 Score=40.42 Aligned_cols=191 Identities=6% Similarity=-0.115 Sum_probs=96.9
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECC-EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 602 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 602 (824)
..++.+|+.+++...+...+...... ...-+| +|++....++ ..+++.+|..+..-..+...+..-.. ....-+
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~-~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~~~~~~~~-~~~spD 300 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAP-RFSPDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTDSPAIDTS-PSYSPD 300 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCc-EECCCCCEEEEEEecCC---CceEEEEECCCCceEEccCCCCccCc-eeEcCC
Confidence 67999999999888776554322211 222244 4544433222 36799999998887776553322111 122224
Q ss_pred CEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECC-EEEEEecCCCCCccceEEEEeCCCCCEEECC
Q psy17309 603 GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHE-CIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP 681 (824)
Q Consensus 603 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 681 (824)
++-.++..... ....++.+|..+...+.+..... ........-+| .|++... ... ...++.+|+.+...+.+.
T Consensus 301 G~~i~f~s~~~--g~~~Iy~~d~~g~~~~~lt~~~~-~~~~~~~SpdG~~ia~~~~-~~~--~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 301 GSQIVFESDRS--GSPQLYVMNADGSNPRRISFGGG-RYSTPVWSPRGDLIAFTKQ-GGG--QFSIGVMKPDGSGERILT 374 (435)
T ss_pred CCEEEEEECCC--CCCeEEEEECCCCCeEEeecCCC-cccCeEECCCCCEEEEEEc-CCC--ceEEEEEECCCCceEecc
Confidence 44333332211 12578899988877766643211 11111222244 4444432 211 247889998777666554
Q ss_pred CCCCCCcceEEEEECCEEEEEccCCCCc-eeeEEEEEECCCCcEEec
Q psy17309 682 DMYNPRSNFAIEVIDDMIFAIGGFNGVT-TIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 682 ~~p~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~v~~yd~~~~~W~~~ 727 (824)
... ........-+++.+++-...... ....++.+|.+...-..+
T Consensus 375 ~~~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l 419 (435)
T PRK05137 375 SGF--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREV 419 (435)
T ss_pred CCC--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEc
Confidence 321 11111222355544443222111 124688888876655444
No 106
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.89 E-value=14 Score=38.73 Aligned_cols=215 Identities=12% Similarity=0.173 Sum_probs=94.5
Q ss_pred CCCcEEEcccCCCCC-CCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEecc-CCCCcceEEEEEE-CCEEE
Q psy17309 483 RADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAP-MNFKRCYVSTAVH-QDVIY 559 (824)
Q Consensus 483 ~~~~W~~~~~~~~~~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~r~~~~~~~~-~~~iy 559 (824)
.-.+|.......... .....++...++..|++|.. ..++.-.-.-.+|+.++. .+.+...+.+..+ ++.++
T Consensus 45 GG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~------g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~ 118 (302)
T PF14870_consen 45 GGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP------GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAE 118 (302)
T ss_dssp TTSS-EE-----S-----EEEEEEEETTEEEEEEET------TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEE
T ss_pred CCccccccccCCCccceeeEEEEEecCCceEEEcCC------ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEE
Confidence 446798754222211 22334455568889988742 224444445678999862 2344444555444 56777
Q ss_pred EEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCC
Q psy17309 560 AMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRH 638 (824)
Q Consensus 560 v~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 638 (824)
++|.. ..+++=.=.-.+|+.+..-.. -.-..+... ++++++++. .+ +-....|+....|+.......
T Consensus 119 l~~~~------G~iy~T~DgG~tW~~~~~~~~-gs~~~~~r~~dG~~vavs~-~G----~~~~s~~~G~~~w~~~~r~~~ 186 (302)
T PF14870_consen 119 LAGDR------GAIYRTTDGGKTWQAVVSETS-GSINDITRSSDGRYVAVSS-RG----NFYSSWDPGQTTWQPHNRNSS 186 (302)
T ss_dssp EEETT--------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEET-TS----SEEEEE-TT-SS-EEEE--SS
T ss_pred EEcCC------CcEEEeCCCCCCeeEcccCCc-ceeEeEEECCCCcEEEEEC-cc----cEEEEecCCCccceEEccCcc
Confidence 77642 345555556678998754222 112222333 566555553 22 223467888888998875444
Q ss_pred CCcceEEEEECCEEEEEecCCCCCccceEEEEe--CCCCCEEECCCCCCCCcceEE--EEE--CCEEEEEccCCCCceee
Q psy17309 639 RRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYN--PVTKTWSQVPDMYNPRSNFAI--EVI--DDMIFAIGGFNGVTTIY 712 (824)
Q Consensus 639 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd--~~~~~W~~~~~~p~~r~~~~~--~~~--~~~i~v~GG~~~~~~~~ 712 (824)
.|.......-++.|+++. .. ..+..=+ ....+|.+.. .|.....+.. .+. ++.+++.||...
T Consensus 187 ~riq~~gf~~~~~lw~~~-~G-----g~~~~s~~~~~~~~w~~~~-~~~~~~~~~~ld~a~~~~~~~wa~gg~G~----- 254 (302)
T PF14870_consen 187 RRIQSMGFSPDGNLWMLA-RG-----GQIQFSDDPDDGETWSEPI-IPIKTNGYGILDLAYRPPNEIWAVGGSGT----- 254 (302)
T ss_dssp S-EEEEEE-TTS-EEEEE-TT-----TEEEEEE-TTEEEEE---B--TTSS--S-EEEEEESSSS-EEEEESTT------
T ss_pred ceehhceecCCCCEEEEe-CC-----cEEEEccCCCCcccccccc-CCcccCceeeEEEEecCCCCEEEEeCCcc-----
Confidence 444433334467888875 22 1233333 3445787732 2333333332 222 689999998642
Q ss_pred EEEEEECCCCcEEecc
Q psy17309 713 HVECYDEKTDEWYEAT 728 (824)
Q Consensus 713 ~v~~yd~~~~~W~~~~ 728 (824)
+++=.-.-++|++..
T Consensus 255 -l~~S~DgGktW~~~~ 269 (302)
T PF14870_consen 255 -LLVSTDGGKTWQKDR 269 (302)
T ss_dssp -EEEESSTTSS-EE-G
T ss_pred -EEEeCCCCccceECc
Confidence 333333557899874
No 107
>smart00284 OLF Olfactomedin-like domains.
Probab=92.85 E-value=8.1 Score=39.08 Aligned_cols=169 Identities=15% Similarity=0.135 Sum_probs=96.3
Q ss_pred CCEEEEEecccCCCCCCeEEEEeC----CCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeE
Q psy17309 555 QDVIYAMGGYNGQRRQNSVEKYNY----TENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQW 630 (824)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~----~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 630 (824)
++++|++.|.. ...+.++.|.- ....+...-.+|.+-.+.+.++++|.+|.--. ....+.+||..+.+-
T Consensus 34 ~~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~-----~s~~iiKydL~t~~v 106 (255)
T smart00284 34 KSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKF-----NSHDICRFDLTTETY 106 (255)
T ss_pred CceEEEEcccc--CCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEec-----CCccEEEEECCCCcE
Confidence 46778776543 12345555532 34444444467888889999999999998533 236799999999876
Q ss_pred EEcCCCCCCC------------cceEEEEECCEEEEEecCCCCCccceEEEEeCCC----CCEEECCCCCCCCcceEEEE
Q psy17309 631 TLIEPMRHRR------------SGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVT----KTWSQVPDMYNPRSNFAIEV 694 (824)
Q Consensus 631 ~~~~~~p~~r------------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~----~~W~~~~~~p~~r~~~~~~~ 694 (824)
.....+|.+. ...-.++-.+.|+|+=........-.+-..||.+ .+|.. ..+. +....+..
T Consensus 107 ~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~k-~sa~naFm 183 (255)
T smart00284 107 QKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT--TYNK-RSASNAFM 183 (255)
T ss_pred EEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc--CCCc-ccccccEE
Confidence 5444444321 1122344456677763322221112334667765 35655 2222 23335667
Q ss_pred ECCEEEEEccCCCCceeeEEEEEECCCCcEEeccCCCCCcc
Q psy17309 695 IDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRS 735 (824)
Q Consensus 695 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 735 (824)
+-|.||++-..... ...-.+.||+.+++=. ...+|.+..
T Consensus 184 vCGvLY~~~s~~~~-~~~I~yayDt~t~~~~-~~~i~f~n~ 222 (255)
T smart00284 184 ICGILYVTRSLGSK-GEKVFYAYDTNTGKEG-HLDIPFENM 222 (255)
T ss_pred EeeEEEEEccCCCC-CcEEEEEEECCCCccc-eeeeeeccc
Confidence 78999999532211 1223678999887522 244555433
No 108
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=92.80 E-value=19 Score=39.98 Aligned_cols=191 Identities=10% Similarity=-0.065 Sum_probs=99.2
Q ss_pred cceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC
Q psy17309 523 YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 602 (824)
Q Consensus 523 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 602 (824)
...++..|.....=+.+...... .......-+++..++....+. ...++++|+.++.-..+...+...... ...-+
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~-~~~p~~Spdg~~la~~~~~~~--~~~i~v~d~~~g~~~~~~~~~~~~~~~-~~spD 244 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREP-ILSPAWSPDGQKLAYVSFESG--KPEIYVQDLATGQREKVASFPGMNGAP-AFSPD 244 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCc-eecccCCCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEeecCCCCccce-EECCC
Confidence 45677777754432333222111 111112234544444433221 267999999988776665544332221 12224
Q ss_pred C-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCE-EEEEecCCCCCccceEEEEeCCCCCEEEC
Q psy17309 603 G-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHEC-IYVIGGFNGMSRMCNGEKYNPVTKTWSQV 680 (824)
Q Consensus 603 ~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (824)
+ .|++....++ ...++.+|..++..+.+...+...... ...-+++ |++.....+ ...++.+|..+..+..+
T Consensus 245 g~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l 317 (417)
T TIGR02800 245 GSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNGPGIDTEP-SWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRL 317 (417)
T ss_pred CCEEEEEECCCC---CccEEEEECCCCCEEECCCCCCCCCCE-EECCCCCEEEEEECCCC---CceEEEEECCCCCEEEe
Confidence 4 5655433222 257899999988877765433211111 1122444 544433221 24799999988888776
Q ss_pred CCCCCCCcceE-EEEECCEEEEEccCCCCceeeEEEEEECCCCcEEecc
Q psy17309 681 PDMYNPRSNFA-IEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEAT 728 (824)
Q Consensus 681 ~~~p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (824)
.... ..... ...-+++.+++...+. ....++.+|+.+..++.+.
T Consensus 318 ~~~~--~~~~~~~~spdg~~i~~~~~~~--~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 318 TFRG--GYNASPSWSPDGDLIAFVHREG--GGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred ecCC--CCccCeEECCCCCEEEEEEccC--CceEEEEEeCCCCCeEEcc
Confidence 4321 11122 2223566555554433 2247899999988777664
No 109
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.71 E-value=2.5 Score=42.87 Aligned_cols=154 Identities=13% Similarity=0.223 Sum_probs=90.1
Q ss_pred CCCcCe---EEEEE-ECCEEEEEccCC-------C----C------cccceEEEEEccCCc----eeEecccCCCcceeE
Q psy17309 82 MGPRAY---HGTAV-IGYNIYVIGGFD-------G----N------EYYNSCRCFNAVTKV----WKEIAPMNFKRCYVS 136 (824)
Q Consensus 82 p~~R~~---h~~~~-~~~~~yv~GG~~-------~----~------~~~~~~~~~~~~~~~----W~~~~~~~~~R~~~~ 136 (824)
|.||+| |.|+. +++.|| ||||- + . +-++.++.||.++.+ |++-..- ++...+
T Consensus 30 ~~P~SGGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~--~~~WaG 106 (339)
T PF09910_consen 30 PPPTSGGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHD--KTKWAG 106 (339)
T ss_pred CCCCCCCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCC--cccccc
Confidence 577887 55555 466665 69952 1 1 124779999998877 7665333 333332
Q ss_pred EE---E---ECCEEEEEcCcCCCCCCCcEEEEECCCCeEEEeccccceeeccCCeEEEEcccCCceeeceEEEEECCCCe
Q psy17309 137 TA---V---HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNCMIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKV 210 (824)
Q Consensus 137 ~~---~---~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~ 210 (824)
-+ . ++|.|++.-+ ||...+ -+|..|..+.+=+.+..-+......-.....||=-....-.+.+.|+|+.+++
T Consensus 107 EVSdIlYdP~~D~LLlAR~-DGh~nL-Gvy~ldr~~g~~~~L~~~ps~KG~~~~D~a~F~i~~~~~g~~~i~~~Dli~~~ 184 (339)
T PF09910_consen 107 EVSDILYDPYEDRLLLARA-DGHANL-GVYSLDRRTGKAEKLSSNPSLKGTLVHDYACFGINNFHKGVSGIHCLDLISGK 184 (339)
T ss_pred chhheeeCCCcCEEEEEec-CCccee-eeEEEcccCCceeeccCCCCcCceEeeeeEEEeccccccCCceEEEEEccCCe
Confidence 22 2 3578887654 444333 67888888988888866554332222222334321122346789999999999
Q ss_pred E--EEec--------ccccCcceeeeeeecceEEEE-cccc
Q psy17309 211 W--KEIA--------PMNFKRCYVSTAVHQDVIYAM-GGYN 240 (824)
Q Consensus 211 W--~~i~--------~~~~~r~~~~~~~~~~~~~~~-~g~~ 240 (824)
| +... ..-.++.+....+++.+|... ||.+
T Consensus 185 ~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rGGi~ 225 (339)
T PF09910_consen 185 WVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRGGIF 225 (339)
T ss_pred EEEEecccccCCCCCceEeeccccEEEEeeeEEEEEeccEE
Confidence 9 3321 122344455566677777666 5544
No 110
>PRK04922 tolB translocation protein TolB; Provisional
Probab=92.44 E-value=21 Score=39.82 Aligned_cols=183 Identities=8% Similarity=-0.039 Sum_probs=95.4
Q ss_pred cceEEEEECCCCceEEeccCCCCcceEEEEEECC-EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE
Q psy17309 523 YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL 601 (824)
Q Consensus 523 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 601 (824)
...++++|..+++-..+...+.... .....-+| +|++....++ ..+++.+|+.++.-+.+..-...-... ...-
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~~~~~~~~-~~sp 301 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNHFGIDTEP-TWAP 301 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccCCCCccce-EECC
Confidence 3579999999888777665542211 11222244 5554432222 257999999988876664432211111 1222
Q ss_pred CCE-EEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceE-EEEEC-CEEEEEecCCCCCccceEEEEeCCCCCEE
Q psy17309 602 QGK-IYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVS-CIAYH-ECIYVIGGFNGMSRMCNGEKYNPVTKTWS 678 (824)
Q Consensus 602 ~~~-lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~-~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 678 (824)
+|+ |+......+ ...++.+|..+++.+.+..-. ..... ...-+ ..|++..+.++ ...++.+|+.+.+.+
T Consensus 302 DG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g--~~~~~~~~SpDG~~Ia~~~~~~~---~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 302 DGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQG--NYNARASVSPDGKKIAMVHGSGG---QYRIAVMDLSTGSVR 373 (433)
T ss_pred CCCEEEEEECCCC---CceEEEEECCCCCeEEeecCC--CCccCEEECCCCCEEEEEECCCC---ceeEEEEECCCCCeE
Confidence 454 444322222 246888998888877764211 11111 22224 45555444211 247899999988888
Q ss_pred ECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCC
Q psy17309 679 QVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 679 ~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
.+...+. .......-+++.+++...... ...++.+|.+..
T Consensus 374 ~Lt~~~~--~~~p~~spdG~~i~~~s~~~g--~~~L~~~~~~g~ 413 (433)
T PRK04922 374 TLTPGSL--DESPSFAPNGSMVLYATREGG--RGVLAAVSTDGR 413 (433)
T ss_pred ECCCCCC--CCCceECCCCCEEEEEEecCC--ceEEEEEECCCC
Confidence 7754321 111123335655555433221 235777777543
No 111
>PRK05137 tolB translocation protein TolB; Provisional
Probab=92.14 E-value=23 Score=39.56 Aligned_cols=190 Identities=8% Similarity=-0.072 Sum_probs=96.1
Q ss_pred cceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC
Q psy17309 523 YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 602 (824)
Q Consensus 523 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 602 (824)
...++..|.....=+.+..-..+ .......-+|+-.++...... ...++++|+.+.+.+.+...+....... ..-+
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~-v~~p~wSpDG~~lay~s~~~g--~~~i~~~dl~~g~~~~l~~~~g~~~~~~-~SPD 256 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSL-VLTPRFSPNRQEITYMSYANG--RPRVYLLDLETGQRELVGNFPGMTFAPR-FSPD 256 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCC-eEeeEECCCCCEEEEEEecCC--CCEEEEEECCCCcEEEeecCCCcccCcE-ECCC
Confidence 46788888765433333322111 111112224543333322211 2689999999998887766554322221 2224
Q ss_pred C-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCE-EEEEecCCCCCccceEEEEeCCCCCEEEC
Q psy17309 603 G-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHEC-IYVIGGFNGMSRMCNGEKYNPVTKTWSQV 680 (824)
Q Consensus 603 ~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (824)
| +|++....++ ..+++.+|..+.....+...+..-. .....-+++ |+......+ ...++.+|..+...+.+
T Consensus 257 G~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~~~~~~~-~~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~l 329 (435)
T PRK05137 257 GRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTDSPAIDT-SPSYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRI 329 (435)
T ss_pred CCEEEEEEecCC---CceEEEEECCCCceEEccCCCCccC-ceeEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEe
Confidence 4 4544433222 3578999999888777654332111 112222444 443322211 35789999888777766
Q ss_pred CCCCCCCcceEEEEECC-EEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 681 PDMYNPRSNFAIEVIDD-MIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 681 ~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
.... .........-++ .|++.. .... ...++++|++++....+
T Consensus 330 t~~~-~~~~~~~~SpdG~~ia~~~-~~~~--~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 330 SFGG-GRYSTPVWSPRGDLIAFTK-QGGG--QFSIGVMKPDGSGERIL 373 (435)
T ss_pred ecCC-CcccCeEECCCCCEEEEEE-cCCC--ceEEEEEECCCCceEec
Confidence 4321 111111122244 454443 2221 23788999877766555
No 112
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=92.07 E-value=6.4 Score=41.94 Aligned_cols=137 Identities=18% Similarity=0.121 Sum_probs=87.6
Q ss_pred CEEEEEeec-C-C--Cccc-ceEEEEECCCC-----ceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeC
Q psy17309 509 YNIYVIGGF-D-G--NEYY-NSCRCFNAVTK-----VWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNY 578 (824)
Q Consensus 509 ~~lyv~GG~-~-~--~~~~-~~~~~yd~~~~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 578 (824)
...+++|-. . + .... ..+..|+.... +++.+.....+-.-.+++.++++|.+..| +.+..|+.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l 114 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDL 114 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-------TEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-------CEEEEEEc
Confidence 466667643 2 1 1122 67889998885 56666555555556778888999777766 67889999
Q ss_pred CCCc-EEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-CCEEEEEe
Q psy17309 579 TENQ-WSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY-HECIYVIG 656 (824)
Q Consensus 579 ~t~~-W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~G 656 (824)
..++ +...+.+..+-...++.+.++.|++---..+ -.+..|+.+..+-..++.-+.++...++..+ ++. .+++
T Consensus 115 ~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~s----v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~ 189 (321)
T PF03178_consen 115 DNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKS----VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIV 189 (321)
T ss_dssp ETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSS----EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEE
T ss_pred cCcccchhhheecceEEEEEEeccccEEEEEEcccC----EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEE
Confidence 8888 8888877777677777888887776422221 2345678766667777654556666666666 666 4444
Q ss_pred c
Q psy17309 657 G 657 (824)
Q Consensus 657 G 657 (824)
+
T Consensus 190 ~ 190 (321)
T PF03178_consen 190 G 190 (321)
T ss_dssp E
T ss_pred E
Confidence 4
No 113
>PTZ00421 coronin; Provisional
Probab=91.79 E-value=27 Score=39.59 Aligned_cols=194 Identities=13% Similarity=0.144 Sum_probs=90.9
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceE-----EeccCCCCcceE-EEEEE--CCEEEEEecccCCCCCCeEEEEeCC
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWK-----EIAPMNFKRCYV-STAVH--QDVIYAMGGYNGQRRQNSVEKYNYT 579 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~-----~~~~~~~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 579 (824)
++.+++.|+.+ ..+.+||..++... .+..+....... +++.. ++.+++.||.+ ..+.+||..
T Consensus 87 d~~~LaSgS~D-----gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D-----gtVrIWDl~ 156 (493)
T PTZ00421 87 DPQKLFTASED-----GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD-----MVVNVWDVE 156 (493)
T ss_pred CCCEEEEEeCC-----CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC-----CEEEEEECC
Confidence 45677777754 35777887654321 111121111111 22222 24577777754 468888988
Q ss_pred CCcEEeecCCCcccC-ceEEEE-ECCEEEEEcccCCCCcCCceEEEeCCCCeEE-EcCCCCCCCcceEEEEE-CCEEEEE
Q psy17309 580 ENQWSLIAPMNVERS-DASATT-LQGKIYITGGFNGHNCLNSCEVYDPECNQWT-LIEPMRHRRSGVSCIAY-HECIYVI 655 (824)
Q Consensus 580 t~~W~~~~~~p~~r~-~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~r~~~~~~~~-~~~iyv~ 655 (824)
+.+-.. .+..... -.+++. -++.+++.|+.+ ..+..||+.+.+-. .+..-...+.. .++.. ++..++.
T Consensus 157 tg~~~~--~l~~h~~~V~sla~spdG~lLatgs~D-----g~IrIwD~rsg~~v~tl~~H~~~~~~-~~~w~~~~~~ivt 228 (493)
T PTZ00421 157 RGKAVE--VIKCHSDQITSLEWNLDGSLLCTTSKD-----KKLNIIDPRDGTIVSSVEAHASAKSQ-RCLWAKRKDLIIT 228 (493)
T ss_pred CCeEEE--EEcCCCCceEEEEEECCCCEEEEecCC-----CEEEEEECCCCcEEEEEecCCCCcce-EEEEcCCCCeEEE
Confidence 764321 1211111 112222 267788888765 46788999876522 11111111111 12222 3334444
Q ss_pred ecCCCCCccceEEEEeCCCCC--EEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcEEe
Q psy17309 656 GGFNGMSRMCNGEKYNPVTKT--WSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEWYE 726 (824)
Q Consensus 656 GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (824)
.|.+.. ....+..||+.+.. .... .... .....+..+ ++.++++||...+ .|.+||..++....
T Consensus 229 ~G~s~s-~Dr~VklWDlr~~~~p~~~~-~~d~-~~~~~~~~~d~d~~~L~lggkgDg----~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 229 LGCSKS-QQRQIMLWDTRKMASPYSTV-DLDQ-SSALFIPFFDEDTNLLYIGSKGEG----NIRCFELMNERLTF 296 (493)
T ss_pred EecCCC-CCCeEEEEeCCCCCCceeEe-ccCC-CCceEEEEEcCCCCEEEEEEeCCC----eEEEEEeeCCceEE
Confidence 443321 13568889986432 1111 0111 011112222 5666777764222 57778877766543
No 114
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=91.17 E-value=19 Score=36.72 Aligned_cols=147 Identities=12% Similarity=0.168 Sum_probs=83.6
Q ss_pred eEEEEEECCEEEEEeccc-------C--C--------CCCCeEEEEeCCCCc----EEeecCCCcccCceEEEE----EC
Q psy17309 548 YVSTAVHQDVIYAMGGYN-------G--Q--------RRQNSVEKYNYTENQ----WSLIAPMNVERSDASATT----LQ 602 (824)
Q Consensus 548 ~~~~~~~~~~iyv~GG~~-------~--~--------~~~~~~~~yd~~t~~----W~~~~~~p~~r~~~~~~~----~~ 602 (824)
+-++..+++.||+ ||+- + . .-.+.+..||.++++ |++--.-+....+-..-. ++
T Consensus 39 YNAV~~vDd~IyF-GGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~ 117 (339)
T PF09910_consen 39 YNAVEWVDDFIYF-GGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYE 117 (339)
T ss_pred ceeeeeecceEEE-eeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCc
Confidence 4456667777775 7752 1 0 124678999999887 554333333222221111 26
Q ss_pred CEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCE--EEC
Q psy17309 603 GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTW--SQV 680 (824)
Q Consensus 603 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W--~~~ 680 (824)
++|++.-+ + ....--++..|.+++.=+.+..-|... ++..++...+-+ .+-......+.+||+.+++| +..
T Consensus 118 D~LLlAR~-D-Gh~nLGvy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~~~~~g~~~i~~~Dli~~~~~~e~f 190 (339)
T PF09910_consen 118 DRLLLARA-D-GHANLGVYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI--NNFHKGVSGIHCLDLISGKWVIESF 190 (339)
T ss_pred CEEEEEec-C-CcceeeeEEEcccCCceeeccCCCCcC---ceEeeeeEEEec--cccccCCceEEEEEccCCeEEEEec
Confidence 78887643 2 223345788888888887776655542 234444444433 22233367899999999999 443
Q ss_pred CCC-------CCCCcceEEEEECCEEEEE
Q psy17309 681 PDM-------YNPRSNFAIEVIDDMIFAI 702 (824)
Q Consensus 681 ~~~-------p~~r~~~~~~~~~~~i~v~ 702 (824)
+.- ...|....++...+++|.|
T Consensus 191 ~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 191 DVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred ccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 211 1124444566666766655
No 115
>PLN00181 protein SPA1-RELATED; Provisional
Probab=91.04 E-value=19 Score=43.93 Aligned_cols=180 Identities=11% Similarity=0.106 Sum_probs=90.1
Q ss_pred CEEEEEeecCCCcccceEEEEECCCCceEEeccCCCC-cceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFK-RCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
+..++.|+.+ ..+..||..+++-. ..+... ..-.+++.. ++.+++.||.+ ..+.+||..+..-.
T Consensus 545 ~~~las~~~D-----g~v~lWd~~~~~~~--~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~iWd~~~~~~~- 611 (793)
T PLN00181 545 KSQVASSNFE-----GVVQVWDVARSQLV--TEMKEHEKRVWSIDYSSADPTLLASGSDD-----GSVKLWSINQGVSI- 611 (793)
T ss_pred CCEEEEEeCC-----CeEEEEECCCCeEE--EEecCCCCCEEEEEEcCCCCCEEEEEcCC-----CEEEEEECCCCcEE-
Confidence 4455566543 45788888765432 222111 112233332 56777888754 45788888765321
Q ss_pred ecCCCcccCceEEEEE---CCEEEEEcccCCCCcCCceEEEeCCCCe--EEEcCCCCCCCcc-eEEEEECCEEEEEecCC
Q psy17309 586 IAPMNVERSDASATTL---QGKIYITGGFNGHNCLNSCEVYDPECNQ--WTLIEPMRHRRSG-VSCIAYHECIYVIGGFN 659 (824)
Q Consensus 586 ~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~ 659 (824)
..+... ....++.. ++.+++.|+.+ ..+..||..+.. ...+. ..... ..+...++..++.|+.+
T Consensus 612 -~~~~~~-~~v~~v~~~~~~g~~latgs~d-----g~I~iwD~~~~~~~~~~~~---~h~~~V~~v~f~~~~~lvs~s~D 681 (793)
T PLN00181 612 -GTIKTK-ANICCVQFPSESGRSLAFGSAD-----HKVYYYDLRNPKLPLCTMI---GHSKTVSYVRFVDSSTLVSSSTD 681 (793)
T ss_pred -EEEecC-CCeEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCCCccceEec---CCCCCEEEEEEeCCCEEEEEECC
Confidence 111111 11122222 46778888755 468889986542 11111 11111 12223366667777654
Q ss_pred CCCccceEEEEeCCCC----CEEECCCCCCCCc--ceEEEEECCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 660 GMSRMCNGEKYNPVTK----TWSQVPDMYNPRS--NFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 660 ~~~~~~~v~~yd~~~~----~W~~~~~~p~~r~--~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
..+..||+... .|..+..+..... .......++.+++.|+.++ .+.+|+...
T Consensus 682 -----~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~-----~v~iw~~~~ 739 (793)
T PLN00181 682 -----NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN-----EVFVYHKAF 739 (793)
T ss_pred -----CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC-----EEEEEECCC
Confidence 45777887543 2332222211111 1112233677888888665 577777654
No 116
>KOG2055|consensus
Probab=91.00 E-value=7.2 Score=41.86 Aligned_cols=147 Identities=16% Similarity=0.186 Sum_probs=84.3
Q ss_pred CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCE-EEEEcccCCCCcCCceEEEeCCCCeEE
Q psy17309 555 QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGK-IYITGGFNGHNCLNSCEVYDPECNQWT 631 (824)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~~v~~yd~~~~~W~ 631 (824)
.-.+.+++|.++. -.++..|-.+|. .+.++-..++.-..+.+ +|. ..+++|.. .-++.||..+.+-+
T Consensus 224 ~~plllvaG~d~~---lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr-----ky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR-----KYLYSYDLETAKVT 293 (514)
T ss_pred CCceEEEecCCCc---EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccc-----eEEEEeeccccccc
Confidence 3467888887643 345555656655 44444333222222222 555 66666643 56889999999988
Q ss_pred EcCCCCC---CCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCC
Q psy17309 632 LIEPMRH---RRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGV 708 (824)
Q Consensus 632 ~~~~~p~---~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~ 708 (824)
++.++-. +-...-.+..++...++-|.+ .-++.....+++|-.--.++..........-+.+|+++||..
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~-----G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~G-- 366 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNN-----GHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTG-- 366 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEcccC-----ceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCc--
Confidence 8875421 111112344566666776653 346677777777754333333323333333356788888753
Q ss_pred ceeeEEEEEECCCC
Q psy17309 709 TTIYHVECYDEKTD 722 (824)
Q Consensus 709 ~~~~~v~~yd~~~~ 722 (824)
.||+||..++
T Consensus 367 ----eV~v~nl~~~ 376 (514)
T KOG2055|consen 367 ----EVYVWNLRQN 376 (514)
T ss_pred ----eEEEEecCCc
Confidence 6999999886
No 117
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=90.85 E-value=0.43 Score=38.69 Aligned_cols=39 Identities=23% Similarity=0.558 Sum_probs=30.7
Q ss_pred ecCHhhHHHHHHHHhhcChHhHHHHHHHHHhhcCCcchH
Q psy17309 271 HITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNC 309 (824)
Q Consensus 271 ~l~~~~v~~ll~~a~~~~i~~l~~~c~~~l~~~l~~~N~ 309 (824)
.++.+.+.+|+.||++|+|+.|.+.|++++...+...+.
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~ 48 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSP 48 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-H
T ss_pred HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCH
Confidence 346778999999999999999999999999887765544
No 118
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.75 E-value=20 Score=37.49 Aligned_cols=199 Identities=14% Similarity=0.204 Sum_probs=86.6
Q ss_pred CCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEE
Q psy17309 482 TRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIY 559 (824)
Q Consensus 482 ~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iy 559 (824)
-...+|..++.+ .+.|...+.+..+ ++.+.++|.. ..+++=.-.-.+|+.+..-... .-..+... ++.++
T Consensus 88 DgG~tW~~v~l~-~~lpgs~~~i~~l~~~~~~l~~~~------G~iy~T~DgG~tW~~~~~~~~g-s~~~~~r~~dG~~v 159 (302)
T PF14870_consen 88 DGGKTWERVPLS-SKLPGSPFGITALGDGSAELAGDR------GAIYRTTDGGKTWQAVVSETSG-SINDITRSSDGRYV 159 (302)
T ss_dssp STTSS-EE-----TT-SS-EEEEEEEETTEEEEEETT--------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EE
T ss_pred CCCCCcEEeecC-CCCCCCeeEEEEcCCCcEEEEcCC------CcEEEeCCCCCCeeEcccCCcc-eeEeEEECCCCcEE
Confidence 345689987533 2234444555555 6667776532 3456555566789987643322 22223333 56666
Q ss_pred EEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEe--CCCCeEEEcC-CC
Q psy17309 560 AMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYD--PECNQWTLIE-PM 636 (824)
Q Consensus 560 v~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd--~~~~~W~~~~-~~ 636 (824)
++|.. + +-....|+....|+........|-......-++.|+++. ..+ .+..=+ -...+|.+.. +.
T Consensus 160 avs~~-G----~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~~~~~ 228 (302)
T PF14870_consen 160 AVSSR-G----NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGG-----QIQFSDDPDDGETWSEPIIPI 228 (302)
T ss_dssp EEETT-S----SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTT-----EEEEEE-TTEEEEE---B-TT
T ss_pred EEECc-c----cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCc-----EEEEccCCCCccccccccCCc
Confidence 66532 1 223456888888987654433333333333367787764 221 122222 2345677632 22
Q ss_pred CCCCcceE-EEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCC-CCCCcceEEEEE-CCEEEEEccC
Q psy17309 637 RHRRSGVS-CIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDM-YNPRSNFAIEVI-DDMIFAIGGF 705 (824)
Q Consensus 637 p~~r~~~~-~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~~~-~~~i~v~GG~ 705 (824)
+....+.- ++.. ++.+++.||. ..+++=.-.-++|++.... +.|-..+.++-+ +++-|++|-.
T Consensus 229 ~~~~~~~ld~a~~~~~~~wa~gg~------G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~ 295 (302)
T PF14870_consen 229 KTNGYGILDLAYRPPNEIWAVGGS------GTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQD 295 (302)
T ss_dssp SS--S-EEEEEESSSS-EEEEEST------T-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-ST
T ss_pred ccCceeeEEEEecCCCCEEEEeCC------ccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCC
Confidence 22223222 2333 5889999984 3455555567899998532 333333444433 6799999853
No 119
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=90.56 E-value=27 Score=37.28 Aligned_cols=183 Identities=8% Similarity=0.024 Sum_probs=84.3
Q ss_pred ceEEEEECCC-CcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECC-CCceEEeccCCCCcceEE
Q psy17309 475 DFVETYDTRA-DRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAV-TKVWKEIAPMNFKRCYVS 550 (824)
Q Consensus 475 ~~~~~yd~~~-~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~-~~~W~~~~~~~~~r~~~~ 550 (824)
..+..||..+ .++..+...+. ....+.++.. +..||+.+.. ...+..|+.. ++++..+...+.+..-+.
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~--~~~~~~l~~spd~~~lyv~~~~-----~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDV--PGQVQPMVISPDKRHLYVGVRP-----EFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred CCEEEEEECCCCceeeeeEEec--CCCCccEEECCCCCEEEEEECC-----CCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 4567777753 45554322221 1112223332 4567775431 2456667765 456765544333222223
Q ss_pred EEEE-CC-EEEEEecccCCCCCCeEEEEeCCCCc--EEeecCCCcccCceEEEEE-C-CEEEEEcccCCCCcCCceEEEe
Q psy17309 551 TAVH-QD-VIYAMGGYNGQRRQNSVEKYNYTENQ--WSLIAPMNVERSDASATTL-Q-GKIYITGGFNGHNCLNSCEVYD 624 (824)
Q Consensus 551 ~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~v~~yd 624 (824)
++.. ++ .+|+..- . .+.+.+|+..++. .+.+..++.....|.++.. + +.+|+..- ..+.+.+||
T Consensus 85 i~~~~~g~~l~v~~~-~----~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~-----~~~~v~v~d 154 (330)
T PRK11028 85 ISTDHQGRFLFSASY-N----ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL-----KEDRIRLFT 154 (330)
T ss_pred EEECCCCCEEEEEEc-C----CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC-----CCCEEEEEE
Confidence 3333 44 5666542 1 2567777775321 1222222322334554444 3 46666542 235788999
Q ss_pred CCCCe-EEEcC----CCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCC--CCCEEE
Q psy17309 625 PECNQ-WTLIE----PMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPV--TKTWSQ 679 (824)
Q Consensus 625 ~~~~~-W~~~~----~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~--~~~W~~ 679 (824)
..++. ..... ..+....-..++.. +..+|+.-.. .+++.+||.. +.+.+.
T Consensus 155 ~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 155 LSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----NSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred ECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----CCEEEEEEEeCCCCCEEE
Confidence 87632 22110 11211111223333 3467776432 3567777765 445433
No 120
>PRK04792 tolB translocation protein TolB; Provisional
Probab=90.32 E-value=35 Score=38.28 Aligned_cols=148 Identities=7% Similarity=-0.036 Sum_probs=81.1
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECC-EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 602 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 602 (824)
..++.+|+.+++-..+...+...... ...-++ .|++....++ ..+++.+|..+++.+.+..-...-.. ....-+
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~-~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~~~~~~-p~wSpD 316 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAP-RFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRHRAIDTE-PSWHPD 316 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCe-eECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccCCCCccc-eEECCC
Confidence 57999999988777666544221111 122244 5655543222 25799999999988877543211111 112224
Q ss_pred C-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECC
Q psy17309 603 G-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP 681 (824)
Q Consensus 603 ~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 681 (824)
+ .|++.....+ ...++.+|..+++++.+..- ..........-+|+.+++.+... ....++.+|+.+.+.+.+.
T Consensus 317 G~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~-g~~~~~~~~SpDG~~l~~~~~~~--g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 317 GKSLIFTSERGG---KPQIYRVNLASGKVSRLTFE-GEQNLGGSITPDGRSMIMVNRTN--GKFNIARQDLETGAMQVLT 390 (448)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCEEEEecC-CCCCcCeeECCCCCEEEEEEecC--CceEEEEEECCCCCeEEcc
Confidence 4 4544432222 25789999999988877421 11111122222444333433222 1347889999998887765
Q ss_pred C
Q psy17309 682 D 682 (824)
Q Consensus 682 ~ 682 (824)
.
T Consensus 391 ~ 391 (448)
T PRK04792 391 S 391 (448)
T ss_pred C
Confidence 3
No 121
>PRK03629 tolB translocation protein TolB; Provisional
Probab=90.29 E-value=34 Score=38.11 Aligned_cols=204 Identities=11% Similarity=-0.054 Sum_probs=100.7
Q ss_pred EEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCC
Q psy17309 510 NIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPM 589 (824)
Q Consensus 510 ~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~ 589 (824)
-+|+....+ ......++..|.....=..+...+.. ...-...-+|+.+++..... ....++.+|..+.+-+.+...
T Consensus 166 iayv~~~~~-~~~~~~l~~~d~dg~~~~~lt~~~~~-~~~p~wSPDG~~la~~s~~~--g~~~i~i~dl~~G~~~~l~~~ 241 (429)
T PRK03629 166 IAYVVQTNG-GQFPYELRVSDYDGYNQFVVHRSPQP-LMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQVASF 241 (429)
T ss_pred EEEEEeeCC-CCcceeEEEEcCCCCCCEEeecCCCc-eeeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCCeEEccCC
Confidence 345554322 23456788888765432333222111 11112223454333322211 125789999988876666655
Q ss_pred CcccCceEEEEECC-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEE
Q psy17309 590 NVERSDASATTLQG-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGE 668 (824)
Q Consensus 590 p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~ 668 (824)
+..-.. ....-+| +|++....++ ...++.+|..+++.+.+..-+..... ....-+|+-+++..... ....++
T Consensus 242 ~~~~~~-~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~~~~~~~~-~~wSPDG~~I~f~s~~~--g~~~Iy 314 (429)
T PRK03629 242 PRHNGA-PAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDGRSNNTE-PTWFPDSQNLAYTSDQA--GRPQVY 314 (429)
T ss_pred CCCcCC-eEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccCCCCCcCc-eEECCCCCEEEEEeCCC--CCceEE
Confidence 432221 1122244 4555433222 24689999998887776543221111 11122455333333211 135788
Q ss_pred EEeCCCCCEEECCCCCCCCcceEEEEECCE-EEEEccCCCCceeeEEEEEECCCCcEEecc
Q psy17309 669 KYNPVTKTWSQVPDMYNPRSNFAIEVIDDM-IFAIGGFNGVTTIYHVECYDEKTDEWYEAT 728 (824)
Q Consensus 669 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (824)
.+|+.+..-+.+..... ........-+++ |++.+..++ ...++++|++++.++.+.
T Consensus 315 ~~d~~~g~~~~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g---~~~I~~~dl~~g~~~~Lt 371 (429)
T PRK03629 315 KVNINGGAPQRITWEGS-QNQDADVSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQVLT 371 (429)
T ss_pred EEECCCCCeEEeecCCC-CccCEEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEeC
Confidence 89998877666532211 111122223454 444443322 236899999999888774
No 122
>KOG0772|consensus
Probab=90.15 E-value=33 Score=37.66 Aligned_cols=268 Identities=14% Similarity=0.166 Sum_probs=128.7
Q ss_pred ECCEEEEEeecCCCcccceEEEEECCCCceEEec-------cCCCCcceEEEEEE-------CCEEEEEecccCCCCCCe
Q psy17309 507 IGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIA-------PMNFKRCYVSTAVH-------QDVIYAMGGYNGQRRQNS 572 (824)
Q Consensus 507 ~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-------~~~~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~ 572 (824)
.++.|+|+.|. ...-.||-....|.+.. .|.. -.+|.+... +...|+..+.++.
T Consensus 225 Tg~~iLvvsg~------aqakl~DRdG~~~~e~~KGDQYI~Dm~n-TKGHia~lt~g~whP~~k~~FlT~s~Dgt----- 292 (641)
T KOG0772|consen 225 TGDQILVVSGS------AQAKLLDRDGFEIVEFSKGDQYIRDMYN-TKGHIAELTCGCWHPDNKEEFLTCSYDGT----- 292 (641)
T ss_pred CCCeEEEEecC------cceeEEccCCceeeeeeccchhhhhhhc-cCCceeeeeccccccCcccceEEecCCCc-----
Confidence 37888888884 33456666666665543 2211 122322221 1234554443322
Q ss_pred EEEEeCCC--CcEEee--cCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCC-----CCCc
Q psy17309 573 VEKYNYTE--NQWSLI--APMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMR-----HRRS 641 (824)
Q Consensus 573 ~~~yd~~t--~~W~~~--~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-----~~r~ 641 (824)
+..+|... .+-+.+ .++...|...+.|.. ++++ +.+|+.+ .++..+|. ..|..-+.+- .+..
T Consensus 293 lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~D----GSIQ~W~~--~~~~v~p~~~vk~AH~~g~ 365 (641)
T KOG0772|consen 293 LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLD----GSIQIWDK--GSRTVRPVMKVKDAHLPGQ 365 (641)
T ss_pred EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccC----Cceeeeec--CCcccccceEeeeccCCCC
Confidence 22222221 111222 234456777777766 5677 5566543 36777774 4454433321 2222
Q ss_pred ceEEEE--ECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcce-EEEEECCEEEEEccCCCCc-eeeEEEEE
Q psy17309 642 GVSCIA--YHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNF-AIEVIDDMIFAIGGFNGVT-TIYHVECY 717 (824)
Q Consensus 642 ~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~i~v~GG~~~~~-~~~~v~~y 717 (824)
..+++. .+|++.+.-|.++...+.++-.+.---..|+-++.+ --.. ++..-+++|++.|-.-.+. ....++.|
T Consensus 366 ~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~---~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~ 442 (641)
T KOG0772|consen 366 DITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTP---FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFF 442 (641)
T ss_pred ceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCcc---CCCCccccCCCceEEEecccccCCCCCceEEEE
Confidence 333443 377777777765433222222222223456555432 1122 2333488999988653332 23357888
Q ss_pred ECCCCcEEeccCCCCCccceeEEEEcCccceeccccccccchhhHhhhhhhcccccccccccccCCCCCccccCcCCCCC
Q psy17309 718 DEKTDEWYEATDMNIYRSALSACVIMGLPNVYDYIHQHRDSLMEEKRQKLLAIEGRQRQNQSEEGNSSQQSVLPSSNSNV 797 (824)
Q Consensus 718 d~~~~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~p~~~~~~ 797 (824)
|+.+ ...+..++..-.....|...-+|.-.. .+.+++ ..+++ ||++.++--.-.+.+...
T Consensus 443 d~~t--~d~v~ki~i~~aSvv~~~WhpkLNQi~--~gsgdG-----~~~vy-----------Ydp~~S~RGak~cv~k~~ 502 (641)
T KOG0772|consen 443 DRMT--LDTVYKIDISTASVVRCLWHPKLNQIF--AGSGDG-----TAHVY-----------YDPNESIRGAKLCVVKPP 502 (641)
T ss_pred eccc--eeeEEEecCCCceEEEEeecchhhhee--eecCCC-----ceEEE-----------ECccccccchhheeecCc
Confidence 8765 334444444323333333333322211 111121 11233 677666665555556666
Q ss_pred cCccccccCccceeeeecC
Q psy17309 798 SSSDGVMNNASSMMLVPRY 816 (824)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~ 816 (824)
|......--...++++|+-
T Consensus 503 rkk~~~e~~~~~~ii~pha 521 (641)
T KOG0772|consen 503 RKKHIDEDLSEDVIINPHA 521 (641)
T ss_pred cccchhhhcCcceEEcccc
Confidence 6666555566677777763
No 123
>PLN00181 protein SPA1-RELATED; Provisional
Probab=90.03 E-value=54 Score=39.98 Aligned_cols=142 Identities=11% Similarity=0.110 Sum_probs=70.4
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCce-EEeccCCCCcceEEEEE--ECCEEEEEecccCCCCCCeEEEEeCCCCc--
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVW-KEIAPMNFKRCYVSTAV--HQDVIYAMGGYNGQRRQNSVEKYNYTENQ-- 582 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~t~~-- 582 (824)
++.+++.||.+ ..+..||..+..- ..+. ....-.++.. -++.+++.|+.+ ..+..||..+..
T Consensus 587 ~~~~L~Sgs~D-----g~v~iWd~~~~~~~~~~~---~~~~v~~v~~~~~~g~~latgs~d-----g~I~iwD~~~~~~~ 653 (793)
T PLN00181 587 DPTLLASGSDD-----GSVKLWSINQGVSIGTIK---TKANICCVQFPSESGRSLAFGSAD-----HKVYYYDLRNPKLP 653 (793)
T ss_pred CCCEEEEEcCC-----CEEEEEECCCCcEEEEEe---cCCCeEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCCCcc
Confidence 45677777754 3578888876532 2221 1111112222 246777877744 468889987543
Q ss_pred EEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCC----eEEEcCCCCCCCc--ceEEEEECCEEEEEe
Q psy17309 583 WSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECN----QWTLIEPMRHRRS--GVSCIAYHECIYVIG 656 (824)
Q Consensus 583 W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~----~W~~~~~~p~~r~--~~~~~~~~~~iyv~G 656 (824)
...+..-. ..-..+...++..++.|+.+ ..+-.||..+. .|..+..+..... ...+...++.+++.|
T Consensus 654 ~~~~~~h~--~~V~~v~f~~~~~lvs~s~D-----~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasg 726 (793)
T PLN00181 654 LCTMIGHS--KTVSYVRFVDSSTLVSSSTD-----NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATG 726 (793)
T ss_pred ceEecCCC--CCEEEEEEeCCCEEEEEECC-----CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEE
Confidence 11111111 11112233466667777755 35777887543 2333322211111 112223356777777
Q ss_pred cCCCCCccceEEEEeCCC
Q psy17309 657 GFNGMSRMCNGEKYNPVT 674 (824)
Q Consensus 657 G~~~~~~~~~v~~yd~~~ 674 (824)
+.+ ..+.+|+...
T Consensus 727 s~D-----~~v~iw~~~~ 739 (793)
T PLN00181 727 SET-----NEVFVYHKAF 739 (793)
T ss_pred eCC-----CEEEEEECCC
Confidence 754 4567777654
No 124
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.54 E-value=38 Score=37.51 Aligned_cols=240 Identities=13% Similarity=0.066 Sum_probs=122.4
Q ss_pred CCCCceEEEEECCCCcEEEcccCCCCCCCceeE-EEEE-CCEEEEEeecCCCcc------cceEEEEECCCCceE--Eec
Q psy17309 471 GSPTDFVETYDTRADRWVKIDQVDPMGPRAYHG-TAVI-GYNIYVIGGFDGNEY------YNSCRCFNAVTKVWK--EIA 540 (824)
Q Consensus 471 ~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~-~~~~-~~~lyv~GG~~~~~~------~~~~~~yd~~~~~W~--~~~ 540 (824)
+.....+..+|..+++... . .. .....+ ++.. ++..++....+.... ...++++...+..-. .+-
T Consensus 146 G~e~~~l~v~Dl~tg~~l~--d-~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvf 220 (414)
T PF02897_consen 146 GSEWYTLRVFDLETGKFLP--D-GI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVF 220 (414)
T ss_dssp TSSEEEEEEEETTTTEEEE--E-EE--EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEE
T ss_pred CCceEEEEEEECCCCcCcC--C-cc--cccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEE
Confidence 3444567888888875543 1 11 122222 4444 435555554433222 567888888776543 222
Q ss_pred cCCCCcc-eEEEEE-ECCEEEEEecccCCCCCCeEEEEeCCCC-----cEEeecCCCcccCceEEEEECCEEEEEcccCC
Q psy17309 541 PMNFKRC-YVSTAV-HQDVIYAMGGYNGQRRQNSVEKYNYTEN-----QWSLIAPMNVERSDASATTLQGKIYITGGFNG 613 (824)
Q Consensus 541 ~~~~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~-----~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~ 613 (824)
.-+.... ...+.. -+++..++.-..+.. .+.++..|.... .|..+.+--.. ....+...++.+|+.-..+
T Consensus 221 e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~~~~yi~Tn~~- 297 (414)
T PF02897_consen 221 EEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPREDG-VEYYVDHHGDRLYILTNDD- 297 (414)
T ss_dssp C-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEESSSS--EEEEEEETTEEEEEE-TT-
T ss_pred eecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCCCCc-eEEEEEccCCEEEEeeCCC-
Confidence 2222232 333322 244433333222222 478999999875 78877542222 2223444588999876532
Q ss_pred CCcCCceEEEeCCCCe---EE-EcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCC-CCCEEECCCCCCCCc
Q psy17309 614 HNCLNSCEVYDPECNQ---WT-LIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPV-TKTWSQVPDMYNPRS 688 (824)
Q Consensus 614 ~~~~~~v~~yd~~~~~---W~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~p~~r~ 688 (824)
.....+..++..+.. |. .+.+-.....--.+...++.|++.-=.++ ...+.++|+. +..-..+ ++|..-
T Consensus 298 -a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~---~~~l~v~~~~~~~~~~~~-~~p~~g- 371 (414)
T PF02897_consen 298 -APNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG---SSRLRVYDLDDGKESREI-PLPEAG- 371 (414)
T ss_dssp --TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT---EEEEEEEETT-TEEEEEE-ESSSSS-
T ss_pred -CCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC---ccEEEEEECCCCcEEeee-cCCcce-
Confidence 334577888887664 66 44332222334445566888887754322 4678999988 3333333 233221
Q ss_pred ceEEEEE---CCEEEE-EccCCCCceeeEEEEEECCCCcEEec
Q psy17309 689 NFAIEVI---DDMIFA-IGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 689 ~~~~~~~---~~~i~v-~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
....... .+.+++ +.+.. .-..++.||+.+++.+.+
T Consensus 372 ~v~~~~~~~~~~~~~~~~ss~~---~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 372 SVSGVSGDFDSDELRFSYSSFT---TPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEEEES-TT-SEEEEEEEETT---EEEEEEEEETTTTCEEEE
T ss_pred EEeccCCCCCCCEEEEEEeCCC---CCCEEEEEECCCCCEEEE
Confidence 1111111 234333 44432 234799999999987764
No 125
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=89.34 E-value=9.7 Score=43.64 Aligned_cols=117 Identities=10% Similarity=0.143 Sum_probs=68.4
Q ss_pred EEEECCEEEEEecccCCCCCCeEEEEeCCCCc--EEeecCCCcc--------cCceEEEEECCEEEEEcccCCCCcCCce
Q psy17309 551 TAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ--WSLIAPMNVE--------RSDASATTLQGKIYITGGFNGHNCLNSC 620 (824)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~v 620 (824)
-++.++.||+... ...++.+|..|.+ |+.-...+.. ....+.++.+++||+... ...+
T Consensus 65 Pvv~~g~vyv~s~------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------dg~l 132 (527)
T TIGR03075 65 PLVVDGVMYVTTS------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------DARL 132 (527)
T ss_pred CEEECCEEEEECC------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC------CCEE
Confidence 3566899999654 2468889988754 8754433211 112234566888887432 2468
Q ss_pred EEEeCCCCe--EEEcC-CCCCC-CcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC--EEE
Q psy17309 621 EVYDPECNQ--WTLIE-PMRHR-RSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT--WSQ 679 (824)
Q Consensus 621 ~~yd~~~~~--W~~~~-~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~ 679 (824)
.++|.+|++ |+.-. ..... ....+-++.+++||+-...........+..||.++.+ |+.
T Consensus 133 ~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 133 VALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 999998875 76542 11111 1122335668888775432222234578899998764 764
No 126
>KOG1987|consensus
Probab=89.33 E-value=0.68 Score=48.83 Aligned_cols=118 Identities=10% Similarity=-0.062 Sum_probs=92.1
Q ss_pred eeeeeeecceEEEEccc-ccccccceeEEeeecccchhhhheeecccceecCHhhH---HHHHHHHhhcChHhHHHHHHH
Q psy17309 223 YVSTAVHQDVIYAMGGY-NGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNV---ASLLLATDFFCMSKAQDLCCD 298 (824)
Q Consensus 223 ~~~~~~~~~~~~~~~g~-~~e~~~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v---~~ll~~a~~~~i~~l~~~c~~ 298 (824)
...+++...+|.+|+-. ..+..++.+.+.+.+++.++.+..|.|+..-.-.-+.+ ..++.+|..+....++..|..
T Consensus 116 ~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~ 195 (297)
T KOG1987|consen 116 KLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMP 195 (297)
T ss_pred ceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHH
Confidence 33455555566666322 12223344477788999999999999997665555555 489999999999999999999
Q ss_pred HHhhcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHHH
Q psy17309 299 FIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILR--NFVDVA 340 (824)
Q Consensus 299 ~l~~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~--~f~~v~ 340 (824)
.+...+...|....+..++.+.+..+..++..++.. ++..+.
T Consensus 196 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~ 239 (297)
T KOG1987|consen 196 VLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLE 239 (297)
T ss_pred HHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHH
Confidence 999999999988889999999999999999999887 666655
No 127
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=88.99 E-value=37 Score=36.59 Aligned_cols=246 Identities=13% Similarity=0.132 Sum_probs=117.8
Q ss_pred EEccCCCCCCC-ceEEEEECCCCcEEEcccCCCCCCCceeEEEE--ECCEEEEEeecCCCcccceEEEEECCCCceEEec
Q psy17309 464 AIGGWSGGSPT-DFVETYDTRADRWVKIDQVDPMGPRAYHGTAV--IGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIA 540 (824)
Q Consensus 464 ~~GG~~~~~~~-~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 540 (824)
.+|++..+... =.++.||..+.++..+...... -.-.-++. -++.||+..........-..+..+..+++.+.+.
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~--~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEG--ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEEEEEEEEEES--SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCC--CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 45665542221 2355677899999875431111 11111223 2678888865321111222444555557888777
Q ss_pred cCCC-CcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCC-cEEee---------cCC---CcccCceEEEEE--C
Q psy17309 541 PMNF-KRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTEN-QWSLI---------APM---NVERSDASATTL--Q 602 (824)
Q Consensus 541 ~~~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~-~W~~~---------~~~---p~~r~~~~~~~~--~ 602 (824)
..+. ...-+.++.. +..||+.- +. ...+.+|++..+ +-... .+- ...-..|.+... +
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~van-y~----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg 155 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVAN-YG----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG 155 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEE-TT----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS
T ss_pred eeccCCCCcEEEEEecCCCEEEEEE-cc----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC
Confidence 6653 3332333332 44566652 11 256777777653 21111 111 122334555554 3
Q ss_pred CEEEEEcccCCCCcCCceEEEeCCCCe--EEEcC--CCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCC--C
Q psy17309 603 GKIYITGGFNGHNCLNSCEVYDPECNQ--WTLIE--PMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPV--T 674 (824)
Q Consensus 603 ~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~--~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~--~ 674 (824)
+.+||.. --.+.+..|+.+.+. .+... .+|..-.-..++.. +..+||+.-.+ +.|.+|+.. +
T Consensus 156 ~~v~v~d-----lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~v~~~~~~~ 225 (345)
T PF10282_consen 156 RFVYVPD-----LGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS-----NTVSVFDYDPSD 225 (345)
T ss_dssp SEEEEEE-----TTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETTT
T ss_pred CEEEEEe-----cCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC-----CcEEEEeecccC
Confidence 5677752 113678888877665 55433 22322211122333 35799987642 455555544 6
Q ss_pred CCEEEC---CCCCCC---CcceEEEEE---CCEEEEEccCCCCceeeEEEEEEC--CCCcEEeccCCC
Q psy17309 675 KTWSQV---PDMYNP---RSNFAIEVI---DDMIFAIGGFNGVTTIYHVECYDE--KTDEWYEATDMN 731 (824)
Q Consensus 675 ~~W~~~---~~~p~~---r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~p 731 (824)
..++.+ +.+|.. ....+...+ +..||+.-.. .+.|-+|+. ++.+-+.+...+
T Consensus 226 g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~~ 288 (345)
T PF10282_consen 226 GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTVP 288 (345)
T ss_dssp TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEEE
T ss_pred CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEEe
Confidence 666654 334322 212333333 4467776422 235666665 556666654443
No 128
>PTZ00420 coronin; Provisional
Probab=88.95 E-value=50 Score=38.08 Aligned_cols=191 Identities=14% Similarity=0.163 Sum_probs=88.5
Q ss_pred CEEEEEeecCCCcccceEEEEECCCCc--eEEe----ccCCCCcceEEEEEE---CCEEEEEecccCCCCCCeEEEEeCC
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEI----APMNFKRCYVSTAVH---QDVIYAMGGYNGQRRQNSVEKYNYT 579 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~----~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~ 579 (824)
+.+++.||.+ ..+.+||..+.. -..+ ..+.........+.. +..+++.||.+ ..+.+||+.
T Consensus 87 ~~lLASgS~D-----gtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D-----gtIrIWDl~ 156 (568)
T PTZ00420 87 SEILASGSED-----LTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD-----SFVNIWDIE 156 (568)
T ss_pred CCEEEEEeCC-----CeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC-----CeEEEEECC
Confidence 5677778755 357778876431 1110 011111111122222 23455666644 467888887
Q ss_pred CCcEEeecCCCcccCceEEEE-ECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCC--cceEEEE-----ECCE
Q psy17309 580 ENQWSLIAPMNVERSDASATT-LQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRR--SGVSCIA-----YHEC 651 (824)
Q Consensus 580 t~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r--~~~~~~~-----~~~~ 651 (824)
+.+=. ..+.....-.+++. .+|.+++.++.+ ..+..||+.+.+= +..+.... ....++. -++.
T Consensus 157 tg~~~--~~i~~~~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~~--i~tl~gH~g~~~s~~v~~~~fs~d~~ 227 (568)
T PTZ00420 157 NEKRA--FQINMPKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQEI--ASSFHIHDGGKNTKNIWIDGLGGDDN 227 (568)
T ss_pred CCcEE--EEEecCCcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCcE--EEEEecccCCceeEEEEeeeEcCCCC
Confidence 76411 11111111222222 267777777644 4688999987642 22221111 1111111 2445
Q ss_pred EEEEecCCCCCccceEEEEeCCC-CCEEECCCCCCCCcceEEE-EE---CCEEEEEccCCCCceeeEEEEEECCCCcEEe
Q psy17309 652 IYVIGGFNGMSRMCNGEKYNPVT-KTWSQVPDMYNPRSNFAIE-VI---DDMIFAIGGFNGVTTIYHVECYDEKTDEWYE 726 (824)
Q Consensus 652 iyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~p~~r~~~~~~-~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (824)
.++.+|.+.. ....+..||+.. ..-...-.+.. ....+. .. .+.+|+.|..++ .+.+|+...+.-..
T Consensus 228 ~IlTtG~d~~-~~R~VkLWDlr~~~~pl~~~~ld~--~~~~L~p~~D~~tg~l~lsGkGD~-----tIr~~e~~~~~~~~ 299 (568)
T PTZ00420 228 YILSTGFSKN-NMREMKLWDLKNTTSALVTMSIDN--ASAPLIPHYDESTGLIYLIGKGDG-----NCRYYQHSLGSIRK 299 (568)
T ss_pred EEEEEEcCCC-CccEEEEEECCCCCCceEEEEecC--CccceEEeeeCCCCCEEEEEECCC-----eEEEEEccCCcEEe
Confidence 6666665432 123688888774 21111001100 111111 11 477888885544 57777776654333
No 129
>KOG2048|consensus
Probab=88.45 E-value=50 Score=37.52 Aligned_cols=239 Identities=13% Similarity=0.110 Sum_probs=114.2
Q ss_pred CCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCC-----cccceEEEEECCCCc-eEEeccCCCC
Q psy17309 473 PTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGN-----EYYNSCRCFNAVTKV-WKEIAPMNFK 545 (824)
Q Consensus 473 ~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~-----~~~~~~~~yd~~~~~-W~~~~~~~~~ 545 (824)
....++.|++.. .|...+....|..|+--+.+.. +++||-.|+...- ......+.+|+..+. |+..... ..
T Consensus 45 t~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~ 122 (691)
T KOG2048|consen 45 TDGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-EN 122 (691)
T ss_pred cCCcEEEEccCC-CceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-cc
Confidence 456799999987 6877666666777888888888 8899999873210 112233444444433 4422111 11
Q ss_pred cceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEE-EEcccCCCCcCCceEEEe
Q psy17309 546 RCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIY-ITGGFNGHNCLNSCEVYD 624 (824)
Q Consensus 546 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~ly-v~GG~~~~~~~~~v~~yd 624 (824)
.-.++..-+|.+|.+-| ..+.-+.-..++...+..-....+.... ++||..+ .-+-++|
T Consensus 123 -~~l~IgcddGvl~~~s~---------------~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D----g~Iriwd 182 (691)
T KOG2048|consen 123 -TILAIGCDDGVLYDFSI---------------GPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID----GVIRIWD 182 (691)
T ss_pred -ceEEeecCCceEEEEec---------------CCceEEEEeecccccceEEEEEecCCccEEEecccC----ceEEEEE
Confidence 11122223344444433 2222222222332222222333444444 6676533 1255666
Q ss_pred CCCCeEEEcCCC-----CC--CCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE-C
Q psy17309 625 PECNQWTLIEPM-----RH--RRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI-D 696 (824)
Q Consensus 625 ~~~~~W~~~~~~-----p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~ 696 (824)
..+++=-.+-.| .. +....+...+.+...+.|-. ...|..+|....+-.+--..-.+- -.++++- +
T Consensus 183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS-----~G~V~FWd~~~gTLiqS~~~h~ad-Vl~Lav~~~ 256 (691)
T KOG2048|consen 183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDS-----AGTVTFWDSIFGTLIQSHSCHDAD-VLALAVADN 256 (691)
T ss_pred cCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecC-----CceEEEEcccCcchhhhhhhhhcc-eeEEEEcCC
Confidence 655442222211 11 12233445556666666654 346778887765422211111111 1223333 4
Q ss_pred CEEEEEccCCCCceeeEEEEEEC--CCCcEEeccC-CCCCccceeEEEEcC
Q psy17309 697 DMIFAIGGFNGVTTIYHVECYDE--KTDEWYEATD-MNIYRSALSACVIMG 744 (824)
Q Consensus 697 ~~i~v~GG~~~~~~~~~v~~yd~--~~~~W~~~~~-~p~~r~~~~~~~~~~ 744 (824)
+.-++.+|.++ .+..|.. .+++|..... .-+++.--+.+++++
T Consensus 257 ~d~vfsaGvd~-----~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 257 EDRVFSAGVDP-----KIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN 302 (691)
T ss_pred CCeEEEccCCC-----ceEEEEecCCccceeeeccccCCcccceeeeeecc
Confidence 35556667665 3445543 3446877632 233344445566655
No 130
>KOG1036|consensus
Probab=88.38 E-value=18 Score=36.99 Aligned_cols=157 Identities=14% Similarity=0.142 Sum_probs=85.2
Q ss_pred CeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECC
Q psy17309 571 NSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHE 650 (824)
Q Consensus 571 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 650 (824)
.++..||..++.- ...+.....-..++..+..=.+.||.++ .+-+||..+..=..+..--.+.....-. ...
T Consensus 35 gslrlYdv~~~~l--~~~~~~~~plL~c~F~d~~~~~~G~~dg-----~vr~~Dln~~~~~~igth~~~i~ci~~~-~~~ 106 (323)
T KOG1036|consen 35 GSLRLYDVPANSL--KLKFKHGAPLLDCAFADESTIVTGGLDG-----QVRRYDLNTGNEDQIGTHDEGIRCIEYS-YEV 106 (323)
T ss_pred CcEEEEeccchhh--hhheecCCceeeeeccCCceEEEeccCc-----eEEEEEecCCcceeeccCCCceEEEEee-ccC
Confidence 3466777777621 1112222222334445555556677664 6889999998776665433332221111 234
Q ss_pred EEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcE------
Q psy17309 651 CIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEW------ 724 (824)
Q Consensus 651 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W------ 724 (824)
..+|.||.+ ..+..+|+.... .+...-.+-.-++ ..+.+.++|+|+.+. .+.+||..+..=
T Consensus 107 ~~vIsgsWD-----~~ik~wD~R~~~--~~~~~d~~kkVy~-~~v~g~~LvVg~~~r-----~v~iyDLRn~~~~~q~re 173 (323)
T KOG1036|consen 107 GCVISGSWD-----KTIKFWDPRNKV--VVGTFDQGKKVYC-MDVSGNRLVVGTSDR-----KVLIYDLRNLDEPFQRRE 173 (323)
T ss_pred CeEEEcccC-----ccEEEEeccccc--cccccccCceEEE-EeccCCEEEEeecCc-----eEEEEEcccccchhhhcc
Confidence 456778875 568888887521 1111222222233 334555666666544 688898776421
Q ss_pred -------EeccCCCCCccceeEEEEcCcccee
Q psy17309 725 -------YEATDMNIYRSALSACVIMGLPNVY 749 (824)
Q Consensus 725 -------~~~~~~p~~r~~~~~~~~~~~~~~~ 749 (824)
+.+.-.| .+.++.+..++|++++-
T Consensus 174 S~lkyqtR~v~~~p-n~eGy~~sSieGRVavE 204 (323)
T KOG1036|consen 174 SSLKYQTRCVALVP-NGEGYVVSSIEGRVAVE 204 (323)
T ss_pred ccceeEEEEEEEec-CCCceEEEeecceEEEE
Confidence 1123344 56777788888887764
No 131
>PRK02889 tolB translocation protein TolB; Provisional
Probab=88.05 E-value=49 Score=36.88 Aligned_cols=191 Identities=9% Similarity=-0.011 Sum_probs=93.7
Q ss_pred cceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC
Q psy17309 523 YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 602 (824)
Q Consensus 523 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 602 (824)
...++..|........+...+..-.. -...-+++.+++..... ....++.+|+.+.+=+.+...+... ......-+
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~-p~wSPDG~~la~~s~~~--~~~~I~~~dl~~g~~~~l~~~~g~~-~~~~~SPD 250 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIIS-PAWSPDGTKLAYVSFES--KKPVVYVHDLATGRRRVVANFKGSN-SAPAWSPD 250 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCccc-ceEcCCCCEEEEEEccC--CCcEEEEEECCCCCEEEeecCCCCc-cceEECCC
Confidence 35688888765544444322221111 11223454444433221 1356999999888655555444221 11122224
Q ss_pred C-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCE-EEEEecCCCCCccceEEEEeCCCCCEEEC
Q psy17309 603 G-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHEC-IYVIGGFNGMSRMCNGEKYNPVTKTWSQV 680 (824)
Q Consensus 603 ~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (824)
| +|++....++ ..+++.+|..+...+.+..-.. ........-+|+ |+......+ ...++.+|..+...+.+
T Consensus 251 G~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~-~~~~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 251 GRTLAVALSRDG---NSQIYTVNADGSGLRRLTQSSG-IDTEPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRV 323 (427)
T ss_pred CCEEEEEEccCC---CceEEEEECCCCCcEECCCCCC-CCcCeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEE
Confidence 4 5554433332 3578888988777666543221 111112222554 444332111 25788888877777665
Q ss_pred CCCCCCCcceEEEEECC-EEEEEccCCCCceeeEEEEEECCCCcEEecc
Q psy17309 681 PDMYNPRSNFAIEVIDD-MIFAIGGFNGVTTIYHVECYDEKTDEWYEAT 728 (824)
Q Consensus 681 ~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (824)
.... .........-+| .|+.....++ . ..++++|..+++.+.+.
T Consensus 324 t~~g-~~~~~~~~SpDG~~Ia~~s~~~g-~--~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 324 TFTG-SYNTSPRISPDGKLLAYISRVGG-A--FKLYVQDLATGQVTALT 368 (427)
T ss_pred ecCC-CCcCceEECCCCCEEEEEEccCC-c--EEEEEEECCCCCeEEcc
Confidence 4211 111111222244 4444433222 1 37899999888877663
No 132
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=87.99 E-value=4.8 Score=36.27 Aligned_cols=81 Identities=9% Similarity=0.055 Sum_probs=58.1
Q ss_pred EEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCC---CCCCCcceEEEEECCEEEEEccCCCCc-eeeEEEEE-ECC
Q psy17309 646 IAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPD---MYNPRSNFAIEVIDDMIFAIGGFNGVT-TIYHVECY-DEK 720 (824)
Q Consensus 646 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~v~~y-d~~ 720 (824)
+.+||.+|-..-. .......+.+||..+.+|+.+.. .........++.++|+|-++.-..... ..-++|+. |.+
T Consensus 2 icinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 2 ICINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EEECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 4568888887765 23335789999999999998854 234556677888999998886544332 34578888 466
Q ss_pred CCcEEec
Q psy17309 721 TDEWYEA 727 (824)
Q Consensus 721 ~~~W~~~ 727 (824)
+.+|++.
T Consensus 81 k~~Wsk~ 87 (129)
T PF08268_consen 81 KQEWSKK 87 (129)
T ss_pred cceEEEE
Confidence 7899876
No 133
>KOG1036|consensus
Probab=87.57 E-value=33 Score=35.12 Aligned_cols=132 Identities=12% Similarity=0.166 Sum_probs=70.3
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECC
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQG 603 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~ 603 (824)
..+..||..++.-.. .+...-.-..++..+..=.+.||.+ ..+-+||..+..=..+..--.+.....-. ...
T Consensus 35 gslrlYdv~~~~l~~--~~~~~~plL~c~F~d~~~~~~G~~d-----g~vr~~Dln~~~~~~igth~~~i~ci~~~-~~~ 106 (323)
T KOG1036|consen 35 GSLRLYDVPANSLKL--KFKHGAPLLDCAFADESTIVTGGLD-----GQVRRYDLNTGNEDQIGTHDEGIRCIEYS-YEV 106 (323)
T ss_pred CcEEEEeccchhhhh--heecCCceeeeeccCCceEEEeccC-----ceEEEEEecCCcceeeccCCCceEEEEee-ccC
Confidence 457778877662211 1111111233455566556667754 56889999988766665433332221111 223
Q ss_pred EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC
Q psy17309 604 KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 604 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 676 (824)
..+|.||++ .++..+|+.... .......+..-.++- +.+.+.|+|+.+ ..+..||+.+..
T Consensus 107 ~~vIsgsWD-----~~ik~wD~R~~~--~~~~~d~~kkVy~~~-v~g~~LvVg~~~-----r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 107 GCVISGSWD-----KTIKFWDPRNKV--VVGTFDQGKKVYCMD-VSGNRLVVGTSD-----RKVLIYDLRNLD 166 (323)
T ss_pred CeEEEcccC-----ccEEEEeccccc--cccccccCceEEEEe-ccCCEEEEeecC-----ceEEEEEccccc
Confidence 456778876 578888987621 112222223333333 345555566543 578899987643
No 134
>PRK04043 tolB translocation protein TolB; Provisional
Probab=86.97 E-value=55 Score=36.32 Aligned_cols=184 Identities=10% Similarity=-0.045 Sum_probs=100.4
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECC-EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 602 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 602 (824)
.++|.+|+.+++=+.+...+. ........-+| +|.+.-...+ ..+++.+|..+..++.+...+..-... ...-+
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g-~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~~~~~d~~p-~~SPD 287 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQG-MLVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITNYPGIDVNG-NFVED 287 (419)
T ss_pred CEEEEEECCCCcEEEEecCCC-cEEeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcccCCCccCcc-EECCC
Confidence 489999999887666665322 11112223344 5554433222 368999999999998886654311111 12223
Q ss_pred -CEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCE-EEEEecCCCCC---ccceEEEEeCCCCCE
Q psy17309 603 -GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHEC-IYVIGGFNGMS---RMCNGEKYNPVTKTW 677 (824)
Q Consensus 603 -~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~---~~~~v~~yd~~~~~W 677 (824)
.+|+..-... ....++.+|..+++.+.+..-. .... ...-+|+ |.......... ....++.+|+.+..+
T Consensus 288 G~~I~F~Sdr~---g~~~Iy~~dl~~g~~~rlt~~g--~~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 288 DKRIVFVSDRL---GYPNIFMKKLNSGSVEQVVFHG--KNNS-SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred CCEEEEEECCC---CCceEEEEECCCCCeEeCccCC--CcCc-eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 4666654332 2368999999998887664321 1222 2333444 44443322111 235899999999999
Q ss_pred EECCCCCCCCcceEEEEECCE-EEEEccCCCCceeeEEEEEECCCCc
Q psy17309 678 SQVPDMYNPRSNFAIEVIDDM-IFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 678 ~~~~~~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
+.+.... ........-+|+ |++.... +. ...++.++.+.+.
T Consensus 362 ~~LT~~~--~~~~p~~SPDG~~I~f~~~~-~~--~~~L~~~~l~g~~ 403 (419)
T PRK04043 362 RRLTANG--VNQFPRFSSDGGSIMFIKYL-GN--QSALGIIRLNYNK 403 (419)
T ss_pred EECCCCC--CcCCeEECCCCCEEEEEEcc-CC--cEEEEEEecCCCe
Confidence 8886532 222222333555 4444322 21 2357777766543
No 135
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=86.66 E-value=52 Score=36.38 Aligned_cols=204 Identities=11% Similarity=0.048 Sum_probs=111.0
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCC------CCeEEEEeCCC
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRR------QNSVEKYNYTE 580 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~------~~~~~~yd~~t 580 (824)
+++.++++=..++.....++.+|..+++...- .++.+.... ++.. ++..+++...+.... ...+++....+
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt 211 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GIENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGT 211 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EEEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCC
Confidence 56666666444444556799999999854321 112222222 4444 335555555443322 56788888887
Q ss_pred CcEE--eecCCCcccC-ceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCC-----eEEEcCCCCCCCcceEEEEECCE
Q psy17309 581 NQWS--LIAPMNVERS-DASATTL-QGKIYITGGFNGHNCLNSCEVYDPECN-----QWTLIEPMRHRRSGVSCIAYHEC 651 (824)
Q Consensus 581 ~~W~--~~~~~p~~r~-~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~-----~W~~~~~~p~~r~~~~~~~~~~~ 651 (824)
..-+ .+-.-+.... ...+... +++..++.-..+.. .+.++..|.... .|..+.+- ..-....+...++.
T Consensus 212 ~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~-~~~~~~~v~~~~~~ 289 (414)
T PF02897_consen 212 PQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPR-EDGVEYYVDHHGDR 289 (414)
T ss_dssp -GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEES-SSS-EEEEEEETTE
T ss_pred ChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCC-CCceEEEEEccCCE
Confidence 6543 2322222332 2233222 44444443333222 478899998875 78887542 22222334455899
Q ss_pred EEEEecCCCCCccceEEEEeCCCCC---EEE-CCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECC
Q psy17309 652 IYVIGGFNGMSRMCNGEKYNPVTKT---WSQ-VPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEK 720 (824)
Q Consensus 652 iyv~GG~~~~~~~~~v~~yd~~~~~---W~~-~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 720 (824)
+|+.... ......+..+++.... |.. +.+-.....--.+...+++|++.-=.+ ....+.++|+.
T Consensus 290 ~yi~Tn~--~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~---~~~~l~v~~~~ 357 (414)
T PF02897_consen 290 LYILTND--DAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN---GSSRLRVYDLD 357 (414)
T ss_dssp EEEEE-T--T-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEET---TEEEEEEEETT
T ss_pred EEEeeCC--CCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEEC---CccEEEEEECC
Confidence 9998763 2334678888887765 664 433222233445566688988875332 24578999998
No 136
>KOG2075|consensus
Probab=85.58 E-value=2 Score=46.39 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=33.1
Q ss_pred hcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy17309 302 RLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFV 337 (824)
Q Consensus 302 ~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~ 337 (824)
..+..+||+.++.+|++|..+.|.+.|.+|+..+..
T Consensus 183 v~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~ 218 (521)
T KOG2075|consen 183 VKLAADTVITTLYAAKKYLVPALERQCVKFLRKNLM 218 (521)
T ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 467899999999999999999999999999998864
No 137
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=85.38 E-value=1.1e+02 Score=38.42 Aligned_cols=226 Identities=15% Similarity=0.146 Sum_probs=120.3
Q ss_pred CCceEEEEECCCCcEEEcccCCC----------CCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEEec
Q psy17309 473 PTDFVETYDTRADRWVKIDQVDP----------MGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIA 540 (824)
Q Consensus 473 ~~~~~~~yd~~~~~W~~~~~~~~----------~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 540 (824)
..+.|..+|+....-..+..... ..-..-+++++. ++.|||.-..+ ..+..+|+.++.-+.+.
T Consensus 588 ~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n-----~~Ir~id~~~~~V~tla 662 (1057)
T PLN02919 588 NHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN-----HALREIDFVNETVRTLA 662 (1057)
T ss_pred CCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC-----ceEEEEecCCCEEEEEe
Confidence 34567888876553333221000 001223566665 56788875422 46788888877655442
Q ss_pred cCC---------------CCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCC----------C---
Q psy17309 541 PMN---------------FKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPM----------N--- 590 (824)
Q Consensus 541 ~~~---------------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~----------p--- 590 (824)
.-. .-..-+.+++. ++.+|+.... .+.+++||+.+.....+..- +
T Consensus 663 g~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~ 737 (1057)
T PLN02919 663 GNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTST 737 (1057)
T ss_pred ccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----CCeEEEEECCCCeEEEEecCCccccCCCCccccc
Confidence 110 00111234443 6789987542 36789999887765443210 0
Q ss_pred cccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcC---C-CCC--------------CC--cceEEEE-
Q psy17309 591 VERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIE---P-MRH--------------RR--SGVSCIA- 647 (824)
Q Consensus 591 ~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~-~p~--------------~r--~~~~~~~- 647 (824)
.-..-.++++. ++.|||.... .+.+.+||+.++..+.+. + .+. .. .-.+++.
T Consensus 738 ~~~~P~GIavspdG~~LYVADs~-----n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd 812 (1057)
T PLN02919 738 SFAQPSGISLSPDLKELYIADSE-----SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA 812 (1057)
T ss_pred cccCccEEEEeCCCCEEEEEECC-----CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe
Confidence 00112223333 3469988643 367899998876533221 0 000 00 1112222
Q ss_pred ECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCC-----------CCcc-eEEEE-ECCEEEEEccCCCCceeeEE
Q psy17309 648 YHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYN-----------PRSN-FAIEV-IDDMIFAIGGFNGVTTIYHV 714 (824)
Q Consensus 648 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-----------~r~~-~~~~~-~~~~i~v~GG~~~~~~~~~v 714 (824)
-+|.|||....+ +.|.+||+.+...+.+..... .-.. .+++. -+|+|||....+. .|
T Consensus 813 ~dG~LYVADs~N-----~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn-----~I 882 (1057)
T PLN02919 813 KDGQIYVADSYN-----HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS-----LI 882 (1057)
T ss_pred CCCcEEEEECCC-----CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC-----EE
Confidence 257899987643 679999998887765532110 0011 22232 2688999865433 68
Q ss_pred EEEECCCCc
Q psy17309 715 ECYDEKTDE 723 (824)
Q Consensus 715 ~~yd~~~~~ 723 (824)
.++|+.+++
T Consensus 883 rvid~~~~~ 891 (1057)
T PLN02919 883 RYLDLNKGE 891 (1057)
T ss_pred EEEECCCCc
Confidence 889988865
No 138
>KOG0316|consensus
Probab=85.10 E-value=27 Score=34.34 Aligned_cols=108 Identities=11% Similarity=0.258 Sum_probs=73.5
Q ss_pred ECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEEC--CEEEEEecCCCCCccceEEEEeCCCCCEE
Q psy17309 601 LQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYH--ECIYVIGGFNGMSRMCNGEKYNPVTKTWS 678 (824)
Q Consensus 601 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 678 (824)
.++.=+..||-+ ..+..||.+|++-.. .+...-....++.++ ..+.+.|+++ .++..+|-.++.-+
T Consensus 69 ~Dnskf~s~GgD-----k~v~vwDV~TGkv~R--r~rgH~aqVNtV~fNeesSVv~SgsfD-----~s~r~wDCRS~s~e 136 (307)
T KOG0316|consen 69 SDNSKFASCGGD-----KAVQVWDVNTGKVDR--RFRGHLAQVNTVRFNEESSVVASGSFD-----SSVRLWDCRSRSFE 136 (307)
T ss_pred ccccccccCCCC-----ceEEEEEcccCeeee--ecccccceeeEEEecCcceEEEecccc-----ceeEEEEcccCCCC
Confidence 344445555533 568899999886422 111111222345554 4577777764 56889999999988
Q ss_pred ECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEE
Q psy17309 679 QVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWY 725 (824)
Q Consensus 679 ~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (824)
.+..+...+.....+.+.++.+|.|..++ .+-.||+...+-.
T Consensus 137 PiQildea~D~V~Si~v~~heIvaGS~DG-----tvRtydiR~G~l~ 178 (307)
T KOG0316|consen 137 PIQILDEAKDGVSSIDVAEHEIVAGSVDG-----TVRTYDIRKGTLS 178 (307)
T ss_pred ccchhhhhcCceeEEEecccEEEeeccCC-----cEEEEEeecceee
Confidence 88888888999999999999999988776 4677887766543
No 139
>KOG2716|consensus
Probab=85.01 E-value=1 Score=44.36 Aligned_cols=58 Identities=16% Similarity=0.271 Sum_probs=47.7
Q ss_pred ceeEEeeecccchhhhheeecccceecCH--hhHHHHHHHHhhcChHhHHHHHHHHHhhcC
Q psy17309 246 NSVEKYNYTENQDKIEEKKLFERKLHITE--DNVASLLLATDFFCMSKAQDLCCDFIKRLT 304 (824)
Q Consensus 246 ~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~--~~v~~ll~~a~~~~i~~l~~~c~~~l~~~l 304 (824)
+.|-| |=|+.-|..||.||-.|.+.|.+ ..+.+|+.-|.+|.++.|++.|..-+....
T Consensus 46 ~~IFI-DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~fYlL~~Lv~~C~~~i~~~~ 105 (230)
T KOG2716|consen 46 GCIFI-DRSPKHFDTILNFMRDGDVDLPESEKELKELLREAEFYLLDGLVELCQSAIARLI 105 (230)
T ss_pred CcEEe-cCChhHHHHHHHhhhcccccCccchHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc
Confidence 33444 34788899999999998888744 568899999999999999999999776653
No 140
>KOG3473|consensus
Probab=84.76 E-value=0.22 Score=40.66 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=49.7
Q ss_pred eeeecceEEEE-c--ccccccccceeEEeeecccchhhhheee-----cccc------eecCHhhHHHHHHHHhhcC
Q psy17309 226 TAVHQDVIYAM-G--GYNGQRRQNSVEKYNYTENQDKIEEKKL-----FERK------LHITEDNVASLLLATDFFC 288 (824)
Q Consensus 226 ~~~~~~~~~~~-~--g~~~e~~~~~i~l~~~~~~~~~~ll~~~-----Yt~~------l~l~~~~v~~ll~~a~~~~ 288 (824)
.++.+..+++| . |.+.+.+.++++.+++.+..++-+.+|+ |++. ..|.++.+++||.+|++|.
T Consensus 35 ~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 35 HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALELLMAANYLE 111 (112)
T ss_pred hhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHHHHHhhhhc
Confidence 34455666666 2 5678889999999999999998887776 6664 4677899999999999875
No 141
>KOG0511|consensus
Probab=84.55 E-value=1.5 Score=45.52 Aligned_cols=116 Identities=15% Similarity=0.164 Sum_probs=82.2
Q ss_pred ceEEEE-cccccccc-cce---eEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChH--h-HHHHHHHHHhh
Q psy17309 231 DVIYAM-GGYNGQRR-QNS---VEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMS--K-AQDLCCDFIKR 302 (824)
Q Consensus 231 ~~~~~~-~g~~~e~~-~~~---i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~--~-l~~~c~~~l~~ 302 (824)
.+|..| -|-|.|+. ..+ ..++.....+.+++++|+|+.+.++-.+-+.+++..|+++-+. + |+.+...-|.+
T Consensus 314 eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~dr~Lkt~as~~itq 393 (516)
T KOG0511|consen 314 EYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALADDRLLKTAASAEITQ 393 (516)
T ss_pred HHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhhhhhhhhhhhHHHHH
Confidence 455554 45555532 222 3455666778899999999999999999999999999999775 2 44444444444
Q ss_pred c---CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhh
Q psy17309 303 L---TTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIV 347 (824)
Q Consensus 303 ~---l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~ 347 (824)
+ ++.-|++.|+..+-......|.+-+.+|+..|+..+. ..+++.
T Consensus 394 ~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~-~dPe~~ 440 (516)
T KOG0511|consen 394 WLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLL-PDPEGD 440 (516)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhc-CCchhh
Confidence 3 3445678888888888888888888888888887766 343443
No 142
>KOG3545|consensus
Probab=84.45 E-value=35 Score=34.06 Aligned_cols=197 Identities=17% Similarity=0.231 Sum_probs=107.8
Q ss_pred EEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEEC----CCCceEEeccCCCCcceEEEEE
Q psy17309 478 ETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNA----VTKVWKEIAPMNFKRCYVSTAV 553 (824)
Q Consensus 478 ~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~----~~~~W~~~~~~~~~r~~~~~~~ 553 (824)
.......+.|.+ . ++ ++ ++++|+..+..+ ..+.-|.. ..+.|...-.+|.+-.+.+-++
T Consensus 13 ~~~~~~~GsWmr--D-pl--~~--------~~r~~~~~~~~~----~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VV 75 (249)
T KOG3545|consen 13 KTAGPRFGAWMR--D-PL--PA--------DDRIYVMNYFDG----LMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVV 75 (249)
T ss_pred Eeeccccceeec--C-CC--cc--------cCceEEeccccC----ceEEEeccHHHhhccCcceEEeCCCCccccceEE
Confidence 344555677876 1 11 22 577888854432 33444433 3445666667777777788889
Q ss_pred ECCEEEEEecccCCCCCCeEEEEeCCCCc---EEeecCCC------c---ccCceEEEEECCEEEEEcccCCCCcCCceE
Q psy17309 554 HQDVIYAMGGYNGQRRQNSVEKYNYTENQ---WSLIAPMN------V---ERSDASATTLQGKIYITGGFNGHNCLNSCE 621 (824)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~---W~~~~~~p------~---~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~ 621 (824)
++|.+|.-.+ .+..+-+||..+.. |..++.+. - +....-.++-..-|+|+=-..+....--+.
T Consensus 76 ynGs~yynk~-----~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~s 150 (249)
T KOG3545|consen 76 YNGSLYYNKA-----GTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLS 150 (249)
T ss_pred EcceEEeecc-----CCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEee
Confidence 9999988764 34678899988843 44444321 1 122223344444455552222211122236
Q ss_pred EEeCCC----CeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceE-EEEeCCCCCEEECCCCCCCC--cceEEEE
Q psy17309 622 VYDPEC----NQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNG-EKYNPVTKTWSQVPDMYNPR--SNFAIEV 694 (824)
Q Consensus 622 ~yd~~~----~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v-~~yd~~~~~W~~~~~~p~~r--~~~~~~~ 694 (824)
+.||.+ .+|..- .+ .+....+..+-|.||++-...... ..+ +.||..+++-..+ ++|.+. ...++.-
T Consensus 151 kLdp~tl~~e~tW~T~--~~-k~~~~~aF~iCGvLY~v~S~~~~~--~~i~yaydt~~~~~~~~-~ipf~N~y~~~~~id 224 (249)
T KOG3545|consen 151 KLDPETLEVERTWNTT--LP-KRSAGNAFMICGVLYVVHSYNCTH--TQISYAYDTTTGTQERI-DLPFPNPYSYATMID 224 (249)
T ss_pred ccCHHHhheeeeeccc--cC-CCCcCceEEEeeeeEEEeccccCC--ceEEEEEEcCCCceecc-cccccchhhhhhccC
Confidence 677743 356322 22 233344556678999987754332 223 7899988876444 344332 2233332
Q ss_pred E---CCEEEEE
Q psy17309 695 I---DDMIFAI 702 (824)
Q Consensus 695 ~---~~~i~v~ 702 (824)
. +.+||+.
T Consensus 225 YNP~D~~LY~w 235 (249)
T KOG3545|consen 225 YNPRDRRLYAW 235 (249)
T ss_pred CCcccceeeEe
Confidence 2 6788887
No 143
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=84.39 E-value=64 Score=34.73 Aligned_cols=245 Identities=15% Similarity=0.119 Sum_probs=117.4
Q ss_pred CCEEEEEccCCCCCCCceEEEEE--CCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCC
Q psy17309 459 HEILFAIGGWSGGSPTDFVETYD--TRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTK 534 (824)
Q Consensus 459 ~~~l~~~GG~~~~~~~~~~~~yd--~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~ 534 (824)
...||+..... .....+..|. +.+.+...+...+. ....-+.+++. +..||+.- +. ...+..|+...+
T Consensus 48 ~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~~~~-~g~~p~~i~~~~~g~~l~van-y~----~g~v~v~~l~~~ 119 (345)
T PF10282_consen 48 GRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNSVPS-GGSSPCHIAVDPDGRFLYVAN-YG----GGSVSVFPLDDD 119 (345)
T ss_dssp SSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEEEEE-SSSCEEEEEECTTSSEEEEEE-TT----TTEEEEEEECTT
T ss_pred CCEEEEEEccc--cCCCCEEEEEECCCcceeEEeeeecc-CCCCcEEEEEecCCCEEEEEE-cc----CCeEEEEEccCC
Confidence 35677775533 2334454554 44467766533221 12222223332 45566543 21 245667766653
Q ss_pred -ceEEec---------cC---CCCcceEEEEEE-C-CEEEEEecccCCCCCCeEEEEeCCCCc--EEeecC--CCcccCc
Q psy17309 535 -VWKEIA---------PM---NFKRCYVSTAVH-Q-DVIYAMGGYNGQRRQNSVEKYNYTENQ--WSLIAP--MNVERSD 595 (824)
Q Consensus 535 -~W~~~~---------~~---~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~--~p~~r~~ 595 (824)
+-.... +- ...-.-|.+... + ..+|+..= -.+.++.|+..... .+.... +|..-.-
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP 194 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-----GADRVYVYDIDDDTGKLTPVDSIKVPPGSGP 194 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-----TTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-----CCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence 222211 11 122334555555 3 46777531 24778888887765 554332 2222221
Q ss_pred eEEEEE--CCEEEEEcccCCCCcCCceEEEeCC--CCeEEEcC---CCCCC---CcceEEEEE---CCEEEEEecCCCCC
Q psy17309 596 ASATTL--QGKIYITGGFNGHNCLNSCEVYDPE--CNQWTLIE---PMRHR---RSGVSCIAY---HECIYVIGGFNGMS 662 (824)
Q Consensus 596 ~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~--~~~W~~~~---~~p~~---r~~~~~~~~---~~~iyv~GG~~~~~ 662 (824)
.-++.. +..+||+.-.. +.+.+|+.. +..++.+. .+|.. ....+...+ +..||+.-..
T Consensus 195 Rh~~f~pdg~~~Yv~~e~s-----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~---- 265 (345)
T PF10282_consen 195 RHLAFSPDGKYAYVVNELS-----NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG---- 265 (345)
T ss_dssp EEEEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT----
T ss_pred cEEEEcCCcCEEEEecCCC-----CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc----
Confidence 123333 35899986533 455555544 66766553 44332 112333333 3457776532
Q ss_pred ccceEEEEeC--CCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCCCcEEecc
Q psy17309 663 RMCNGEKYNP--VTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEAT 728 (824)
Q Consensus 663 ~~~~v~~yd~--~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (824)
.+.|.+|+. .+.+-+.+...+..-.......+ +++.+++++...+. -.++..|+++..++...
T Consensus 266 -~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~--v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 266 -SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT--VSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp -TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE--EEEEEEETTTTEEEEEE
T ss_pred -CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe--EEEEEEeCCCCcEEEec
Confidence 356777776 45566665444432222222333 45444444433322 24555577888998874
No 144
>KOG0289|consensus
Probab=83.43 E-value=39 Score=36.30 Aligned_cols=140 Identities=14% Similarity=0.218 Sum_probs=79.4
Q ss_pred eEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEe
Q psy17309 548 YVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYD 624 (824)
Q Consensus 548 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd 624 (824)
.++++++ +|.|+..|-.+ ..+-+||..... .++.+|..-.-.....+ ||+..+.+-.+ ..|-+||
T Consensus 350 ~ts~~fHpDgLifgtgt~d-----~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add-----~~V~lwD 417 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD-----GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD-----GSVKLWD 417 (506)
T ss_pred eEEeeEcCCceEEeccCCC-----ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC-----CeEEEEE
Confidence 4445555 66777666432 457788888876 66666653333333333 55554544322 2388899
Q ss_pred CCCCeEEEcCCCCCCC-cceEEEEEC--CEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEECC--EE
Q psy17309 625 PECNQWTLIEPMRHRR-SGVSCIAYH--ECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDD--MI 699 (824)
Q Consensus 625 ~~~~~W~~~~~~p~~r-~~~~~~~~~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~--~i 699 (824)
....+ .....+.+- .......++ |...+++|. .-.|+.|+-.+.+|+++..++........+.++. +.
T Consensus 418 LRKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~-----~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~ 490 (506)
T KOG0289|consen 418 LRKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGS-----DLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQY 490 (506)
T ss_pred ehhhc--ccceeeccccccceeEEEcCCCCeEEeecc-----eeEEEEEecccccceeeehhhhcccccceeeecccceE
Confidence 87655 233222222 233444453 677777764 2467888888999999987665443344555543 34
Q ss_pred EEEccCC
Q psy17309 700 FAIGGFN 706 (824)
Q Consensus 700 ~v~GG~~ 706 (824)
+..||.+
T Consensus 491 l~s~smd 497 (506)
T KOG0289|consen 491 LASTSMD 497 (506)
T ss_pred Eeeccch
Confidence 4444443
No 145
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=83.17 E-value=77 Score=34.77 Aligned_cols=195 Identities=9% Similarity=0.101 Sum_probs=94.0
Q ss_pred CCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCC----CC------------
Q psy17309 483 RADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN----FK------------ 545 (824)
Q Consensus 483 ~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~----~~------------ 545 (824)
....|..++..+.. +........+ ++.++++|.. ..+++-+-.-.+|+.+...+ ..
T Consensus 164 gG~tW~~~~~~~~~-p~~~~~i~~~~~~~~~ivg~~------G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~ 236 (398)
T PLN00033 164 GGETWERIPLSPKL-PGEPVLIKATGPKSAEMVTDE------GAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASY 236 (398)
T ss_pred CCCCceECccccCC-CCCceEEEEECCCceEEEecc------ceEEEECCCCCCceEcccccccccccccccccccccce
Confidence 45689886543211 2122333344 4567777732 23555555567898762111 00
Q ss_pred --cceEEEEE-ECCEEEEEecccCCCCCCeEEE-EeCCCCcEEeecCCCcccCceEE-EEECCEEEEEcccCCCCcCCce
Q psy17309 546 --RCYVSTAV-HQDVIYAMGGYNGQRRQNSVEK-YNYTENQWSLIAPMNVERSDASA-TTLQGKIYITGGFNGHNCLNSC 620 (824)
Q Consensus 546 --r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~-yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~lyv~GG~~~~~~~~~v 620 (824)
-..+.+.. -++.++++|-. ..+++ .|.....|+.+..-... .-.++ ...++.++++|... .+
T Consensus 237 y~Gsf~~v~~~~dG~~~~vg~~------G~~~~s~d~G~~~W~~~~~~~~~-~l~~v~~~~dg~l~l~g~~G------~l 303 (398)
T PLN00033 237 YTGTFSTVNRSPDGDYVAVSSR------GNFYLTWEPGQPYWQPHNRASAR-RIQNMGWRADGGLWLLTRGG------GL 303 (398)
T ss_pred eccceeeEEEcCCCCEEEEECC------ccEEEecCCCCcceEEecCCCcc-ceeeeeEcCCCCEEEEeCCc------eE
Confidence 11122222 24456666532 22333 34444458877543333 32333 23478888876432 12
Q ss_pred EEEeCCCC-----eEEEcCCCCCCCcceEEE-EE-CCEEEEEecCCCCCccceEEEEeCCCCCEEECCC-CCCCCcceEE
Q psy17309 621 EVYDPECN-----QWTLIEPMRHRRSGVSCI-AY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPD-MYNPRSNFAI 692 (824)
Q Consensus 621 ~~yd~~~~-----~W~~~~~~p~~r~~~~~~-~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~r~~~~~ 692 (824)
..-+.... +|..+.. +..+.....+ .. ++.+++.|.. ..+..-...-++|+.... -+.+-..+.+
T Consensus 304 ~~S~d~G~~~~~~~f~~~~~-~~~~~~l~~v~~~~d~~~~a~G~~------G~v~~s~D~G~tW~~~~~~~~~~~~ly~v 376 (398)
T PLN00033 304 YVSKGTGLTEEDFDFEEADI-KSRGFGILDVGYRSKKEAWAAGGS------GILLRSTDGGKSWKRDKGADNIAANLYSV 376 (398)
T ss_pred EEecCCCCcccccceeeccc-CCCCcceEEEEEcCCCcEEEEECC------CcEEEeCCCCcceeEccccCCCCcceeEE
Confidence 22222223 3444432 2222333333 33 6788888864 245555566789999753 2222223344
Q ss_pred EEE-CCEEEEEcc
Q psy17309 693 EVI-DDMIFAIGG 704 (824)
Q Consensus 693 ~~~-~~~i~v~GG 704 (824)
... +++.|+.|-
T Consensus 377 ~f~~~~~g~~~G~ 389 (398)
T PLN00033 377 KFFDDKKGFVLGN 389 (398)
T ss_pred EEcCCCceEEEeC
Confidence 433 578888873
No 146
>KOG0316|consensus
Probab=83.06 E-value=51 Score=32.56 Aligned_cols=187 Identities=11% Similarity=0.118 Sum_probs=101.8
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEEC--CEEEEEecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQ--DVIYAMGGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
++.-+..||- -..++.||..|++-.+- ....-...-++.++ ..+.+-|+.+ .++..+|..+++.+.
T Consensus 70 Dnskf~s~Gg-----Dk~v~vwDV~TGkv~Rr--~rgH~aqVNtV~fNeesSVv~SgsfD-----~s~r~wDCRS~s~eP 137 (307)
T KOG0316|consen 70 DNSKFASCGG-----DKAVQVWDVNTGKVDRR--FRGHLAQVNTVRFNEESSVVASGSFD-----SSVRLWDCRSRSFEP 137 (307)
T ss_pred cccccccCCC-----CceEEEEEcccCeeeee--cccccceeeEEEecCcceEEEecccc-----ceeEEEEcccCCCCc
Confidence 4444555552 25689999998763221 00011111233343 3566666654 678899999999998
Q ss_pred ecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccc
Q psy17309 586 IAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMC 665 (824)
Q Consensus 586 ~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 665 (824)
+.-+...+.+...+.+.+...|.|..++ ++-.||...++-.. .-+..|... ....-++.-.++|-.+ .
T Consensus 138 iQildea~D~V~Si~v~~heIvaGS~DG-----tvRtydiR~G~l~s-Dy~g~pit~-vs~s~d~nc~La~~l~-----s 205 (307)
T KOG0316|consen 138 IQILDEAKDGVSSIDVAEHEIVAGSVDG-----TVRTYDIRKGTLSS-DYFGHPITS-VSFSKDGNCSLASSLD-----S 205 (307)
T ss_pred cchhhhhcCceeEEEecccEEEeeccCC-----cEEEEEeecceeeh-hhcCCccee-EEecCCCCEEEEeecc-----c
Confidence 8889999999999999998888876664 57789987765321 112222111 1112244444555432 2
Q ss_pred eEEEEeCCCCCEEEC-CCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCC
Q psy17309 666 NGEKYNPVTKTWSQV-PDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 666 ~v~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
.+...|-++.+--.. ......-+..-++..+..-.|++|...+ .++.||....
T Consensus 206 tlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG----~Vy~wdLvd~ 259 (307)
T KOG0316|consen 206 TLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDG----KVYFWDLVDE 259 (307)
T ss_pred eeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCc----eEEEEEeccc
Confidence 344555555431110 0000111112234444445556665332 5788887654
No 147
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=82.64 E-value=71 Score=33.97 Aligned_cols=234 Identities=10% Similarity=0.020 Sum_probs=104.6
Q ss_pred ceEEEEECC-CCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCCCcceE
Q psy17309 475 DFVETYDTR-ADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNFKRCYV 549 (824)
Q Consensus 475 ~~~~~yd~~-~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~ 549 (824)
..+..|+.. ..++..+...+.+ ..-+.++.. +..+|+..- . .+.+..||..++. ...+...+....-|
T Consensus 57 ~~i~~~~~~~~g~l~~~~~~~~~--~~p~~i~~~~~g~~l~v~~~-~----~~~v~v~~~~~~g~~~~~~~~~~~~~~~~ 129 (330)
T PRK11028 57 FRVLSYRIADDGALTFAAESPLP--GSPTHISTDHQGRFLFSASY-N----ANCVSVSPLDKDGIPVAPIQIIEGLEGCH 129 (330)
T ss_pred CcEEEEEECCCCceEEeeeecCC--CCceEEEECCCCCEEEEEEc-C----CCeEEEEEECCCCCCCCceeeccCCCccc
Confidence 556667765 3455543222221 112233333 445666542 1 2567777775321 12222222222234
Q ss_pred EEEEE-C-CEEEEEecccCCCCCCeEEEEeCCCC-cEEeec----CCCcccCceEEEEE--CCEEEEEcccCCCCcCCce
Q psy17309 550 STAVH-Q-DVIYAMGGYNGQRRQNSVEKYNYTEN-QWSLIA----PMNVERSDASATTL--QGKIYITGGFNGHNCLNSC 620 (824)
Q Consensus 550 ~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~t~-~W~~~~----~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v 620 (824)
.++.. + ..+|+..- ..+.+.+||..+. ...... ..+....-+.++.. +..+|+.... .+++
T Consensus 130 ~~~~~p~g~~l~v~~~-----~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----~~~v 199 (330)
T PRK11028 130 SANIDPDNRTLWVPCL-----KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----NSSV 199 (330)
T ss_pred EeEeCCCCCEEEEeeC-----CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----CCEE
Confidence 44333 3 46666542 2367899998763 222110 11222112223333 3467776332 3567
Q ss_pred EEEeCC--CCeEEE---cCCCC----CCCcceEEEEE-C-CEEEEEecCCCCCccceEEEEeC--CCCCEEECCCCC---
Q psy17309 621 EVYDPE--CNQWTL---IEPMR----HRRSGVSCIAY-H-ECIYVIGGFNGMSRMCNGEKYNP--VTKTWSQVPDMY--- 684 (824)
Q Consensus 621 ~~yd~~--~~~W~~---~~~~p----~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~p--- 684 (824)
.+||.. +++.+. +..+| .++....++.. + ..+|+.... .+.+.+|+. ....++.+...+
T Consensus 200 ~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~-----~~~I~v~~i~~~~~~~~~~~~~~~~~ 274 (330)
T PRK11028 200 DVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT-----ASLISVFSVSEDGSVLSFEGHQPTET 274 (330)
T ss_pred EEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC-----CCeEEEEEEeCCCCeEEEeEEEeccc
Confidence 777765 444433 33333 23322222222 3 457775321 245666655 344555554332
Q ss_pred CCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEEeccCCCCCc
Q psy17309 685 NPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYR 734 (824)
Q Consensus 685 ~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 734 (824)
.||. .....-+..||+.+..++ .-.++..|.+++.++.+...+...
T Consensus 275 ~p~~-~~~~~dg~~l~va~~~~~---~v~v~~~~~~~g~l~~~~~~~~g~ 320 (330)
T PRK11028 275 QPRG-FNIDHSGKYLIAAGQKSH---HISVYEIDGETGLLTELGRYAVGQ 320 (330)
T ss_pred cCCc-eEECCCCCEEEEEEccCC---cEEEEEEcCCCCcEEEccccccCC
Confidence 2332 111111446666543222 123444466777888876655433
No 148
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=82.58 E-value=62 Score=33.27 Aligned_cols=217 Identities=12% Similarity=0.153 Sum_probs=104.4
Q ss_pred CCCcEEEccc-CCCC--CCCceeEEEEE--CCEEEEEe--ecCCCcc--cceEEEEECC-CCceEEeccCCCC-------
Q psy17309 483 RADRWVKIDQ-VDPM--GPRAYHGTAVI--GYNIYVIG--GFDGNEY--YNSCRCFNAV-TKVWKEIAPMNFK------- 545 (824)
Q Consensus 483 ~~~~W~~~~~-~~~~--~~r~~~~~~~~--~~~lyv~G--G~~~~~~--~~~~~~yd~~-~~~W~~~~~~~~~------- 545 (824)
...+|..... ...+ ..+....+.+. +++|+++. +...... ..-.+..... -.+|+....++..
T Consensus 28 ~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~ 107 (275)
T PF13088_consen 28 GGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSG 107 (275)
T ss_dssp CTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEE
T ss_pred CCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceec
Confidence 4467987421 1111 22333333333 78888886 3222111 1112344444 4579876543321
Q ss_pred -cceEEEEEECCEEEEEecccCCCCCCeEEEEeCC-CCcEEeecCCCc-ccCceEEEE-E-CCEEEEEcccCCCCcCCce
Q psy17309 546 -RCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYT-ENQWSLIAPMNV-ERSDASATT-L-QGKIYITGGFNGHNCLNSC 620 (824)
Q Consensus 546 -r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~-t~~W~~~~~~p~-~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~v 620 (824)
-....+..-+|.+++..=............|+.. -.+|+.....+. ......+.+ . +|+|+++--..... ...
T Consensus 108 ~~~~~~i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~~~~--~~~ 185 (275)
T PF13088_consen 108 PGRGPPIQLPDGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTEGND--DIY 185 (275)
T ss_dssp CSEEEEEEECTTEEEEEEEEESSCEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEECSST--EEE
T ss_pred cceeeeeEecCCCEEEEEeeccccCcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEccCCC--cEE
Confidence 1122234447888877211111112334445444 466988876642 233333333 3 67888875432111 223
Q ss_pred EEEeCC-CCeEEEcC--CCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCC---CCcce-EE
Q psy17309 621 EVYDPE-CNQWTLIE--PMRHRRSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYN---PRSNF-AI 692 (824)
Q Consensus 621 ~~yd~~-~~~W~~~~--~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~---~r~~~-~~ 692 (824)
..+..+ -.+|+... .+|.+.....++.+ +++++++.........-.+..-.....+|+....+.. ....+ .+
T Consensus 186 ~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~ 265 (275)
T PF13088_consen 186 ISRSTDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSL 265 (275)
T ss_dssp EEEESSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEE
T ss_pred EEEECCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCee
Confidence 334433 34799865 45666655555554 5788888873222112233333334778987644322 22333 44
Q ss_pred EEE-CCEEEE
Q psy17309 693 EVI-DDMIFA 701 (824)
Q Consensus 693 ~~~-~~~i~v 701 (824)
+.. +++|+|
T Consensus 266 ~~~~dg~l~i 275 (275)
T PF13088_consen 266 TQLPDGKLYI 275 (275)
T ss_dssp EEEETTEEEE
T ss_pred EEeCCCcCCC
Confidence 455 578886
No 149
>KOG0646|consensus
Probab=81.65 E-value=24 Score=38.06 Aligned_cols=200 Identities=13% Similarity=0.072 Sum_probs=90.4
Q ss_pred eeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcce--EEEEEE-CCEEEEEecccCCCCCCeEEEEe
Q psy17309 501 YHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCY--VSTAVH-QDVIYAMGGYNGQRRQNSVEKYN 577 (824)
Q Consensus 501 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~--~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd 577 (824)
.++.+..+.-.|++|| .....+|++...++.--.+- .+.+. -+.... +|..++.||.++. |..|+
T Consensus 84 v~al~s~n~G~~l~ag----~i~g~lYlWelssG~LL~v~---~aHYQ~ITcL~fs~dgs~iiTgskDg~-----V~vW~ 151 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAG----TISGNLYLWELSSGILLNVL---SAHYQSITCLKFSDDGSHIITGSKDGA-----VLVWL 151 (476)
T ss_pred eeeeecCCCceEEEee----cccCcEEEEEeccccHHHHH---HhhccceeEEEEeCCCcEEEecCCCcc-----EEEEE
Confidence 4555555666777777 22356888888876421111 11111 122222 6677777876533 43333
Q ss_pred CCCCc--EEeecCCC-cccCceEEEEECCEEEE-EcccCCC----CcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE-
Q psy17309 578 YTENQ--WSLIAPMN-VERSDASATTLQGKIYI-TGGFNGH----NCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY- 648 (824)
Q Consensus 578 ~~t~~--W~~~~~~p-~~r~~~~~~~~~~~lyv-~GG~~~~----~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 648 (824)
..+-- -..-.+.| .....|++.+.+ +++ .||.+.. ..-..+-+||...+.-- .....|+.-++++.-
T Consensus 152 l~~lv~a~~~~~~~p~~~f~~HtlsITD--l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL--lti~fp~si~av~lDp 227 (476)
T KOG0646|consen 152 LTDLVSADNDHSVKPLHIFSDHTLSITD--LQIGSGGTNARLYTASEDRTIKLWDLSLGVLL--LTITFPSSIKAVALDP 227 (476)
T ss_pred EEeecccccCCCccceeeeccCcceeEE--EEecCCCccceEEEecCCceEEEEEeccceee--EEEecCCcceeEEEcc
Confidence 21100 00001122 223455555443 222 2333321 22356778888887532 222233333333332
Q ss_pred CCEEEEEecCCCCCccceE------------EEEeCCCCCEEECCCCCCCC--cceEE--EEECCEEEEEccCCCCceee
Q psy17309 649 HECIYVIGGFNGMSRMCNG------------EKYNPVTKTWSQVPDMYNPR--SNFAI--EVIDDMIFAIGGFNGVTTIY 712 (824)
Q Consensus 649 ~~~iyv~GG~~~~~~~~~v------------~~yd~~~~~W~~~~~~p~~r--~~~~~--~~~~~~i~v~GG~~~~~~~~ 712 (824)
.++.+.+|+..+.-....+ ..+++...+ +..+...+ ..-++ ...++.+++.|+.++
T Consensus 228 ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~---~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg----- 299 (476)
T KOG0646|consen 228 AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQ---INVLVGHENESAITCLAISTDGTLLLSGDEDG----- 299 (476)
T ss_pred cccEEEecCCcceEEeeehhcCCcccccccccccccccce---eeeeccccCCcceeEEEEecCccEEEeeCCCC-----
Confidence 2444445654332211111 111111111 11111111 12222 334999999999877
Q ss_pred EEEEEECCCCcE
Q psy17309 713 HVECYDEKTDEW 724 (824)
Q Consensus 713 ~v~~yd~~~~~W 724 (824)
.+.++|+.+.+-
T Consensus 300 ~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 300 KVCVWDIYSKQC 311 (476)
T ss_pred CEEEEecchHHH
Confidence 577788877654
No 150
>PRK03629 tolB translocation protein TolB; Provisional
Probab=80.58 E-value=1e+02 Score=34.38 Aligned_cols=185 Identities=6% Similarity=-0.077 Sum_probs=95.3
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECC-EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 602 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 602 (824)
..++.+|..+++-+.+...+..-.. ....-+| +|++.....+ ..+++.+|..+...+.+..-+..-.. ....-+
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~-~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~~~~~~~~-~~wSPD 297 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGA-PAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDGRSNNTE-PTWFPD 297 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCC-eEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccCCCCCcCc-eEECCC
Confidence 5789999988876666554332111 1222244 4555433222 24699999999887776543321111 111224
Q ss_pred CEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCC
Q psy17309 603 GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPD 682 (824)
Q Consensus 603 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 682 (824)
|+.+++....+ ....++.+|+.+..-+.+..... ........-+|+.+++.+.... ...++.+|+.+.+++.+..
T Consensus 298 G~~I~f~s~~~--g~~~Iy~~d~~~g~~~~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g--~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 298 SQNLAYTSDQA--GRPQVYKVNINGGAPQRITWEGS-QNQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred CCEEEEEeCCC--CCceEEEEECCCCCeEEeecCCC-CccCEEECCCCCEEEEEEccCC--CceEEEEECCCCCeEEeCC
Confidence 54333332211 12478888988876666532211 1111222234544444332221 2468899999999888764
Q ss_pred CCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCC
Q psy17309 683 MYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 683 ~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
.. ........-+++.+++.+.++.. ..+++.+.+..
T Consensus 373 ~~--~~~~p~~SpDG~~i~~~s~~~~~--~~l~~~~~~G~ 408 (429)
T PRK03629 373 TF--LDETPSIAPNGTMVIYSSSQGMG--SVLNLVSTDGR 408 (429)
T ss_pred CC--CCCCceECCCCCEEEEEEcCCCc--eEEEEEECCCC
Confidence 21 11122233477766666554332 24566665443
No 151
>PRK10115 protease 2; Provisional
Probab=80.57 E-value=1.3e+02 Score=35.77 Aligned_cols=250 Identities=10% Similarity=-0.027 Sum_probs=121.6
Q ss_pred EEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCC-cccceEEEEECCCCce--
Q psy17309 461 ILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGN-EYYNSCRCFNAVTKVW-- 536 (824)
Q Consensus 461 ~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~-~~~~~~~~yd~~~~~W-- 536 (824)
..++++-...+.....+...|+.++.... .+......+++.. ++.-+++...+.. ....+++++++.+..-
T Consensus 139 ~~la~~~d~~G~E~~~l~v~d~~tg~~l~-----~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d 213 (686)
T PRK10115 139 TIMALAEDFLSRRQYGIRFRNLETGNWYP-----ELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQD 213 (686)
T ss_pred CEEEEEecCCCcEEEEEEEEECCCCCCCC-----ccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHC
Confidence 34555543334444556667766553111 1111122334444 4443334333221 2347899999988732
Q ss_pred EEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeC--CCCcEEeecCCCcccCceEEEEECCEEEEEcccCC
Q psy17309 537 KEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNY--TENQWSLIAPMNVERSDASATTLQGKIYITGGFNG 613 (824)
Q Consensus 537 ~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~--~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~ 613 (824)
..+-.-+........... +++..++....+ ..+.++.|+. .+..|..+.+.+.... ......++.+|+.--.+
T Consensus 214 ~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ly~~tn~~- 289 (686)
T PRK10115 214 ELVYEEKDDTFYVSLHKTTSKHYVVIHLASA--TTSEVLLLDAELADAEPFVFLPRRKDHE-YSLDHYQHRFYLRSNRH- 289 (686)
T ss_pred eEEEeeCCCCEEEEEEEcCCCCEEEEEEECC--ccccEEEEECcCCCCCceEEEECCCCCE-EEEEeCCCEEEEEEcCC-
Confidence 122111112222233333 444334444322 3467788873 3344433322222211 22334467888874322
Q ss_pred CCcCCceEEEeCC-CCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEE
Q psy17309 614 HNCLNSCEVYDPE-CNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAI 692 (824)
Q Consensus 614 ~~~~~~v~~yd~~-~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~ 692 (824)
.....+...+.. +.+|+.+-+....+.--.....++.|++..-.++ ...++++|+.+.....+. ++.+... +.
T Consensus 290 -~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g---~~~l~~~~~~~~~~~~l~-~~~~~~~-~~ 363 (686)
T PRK10115 290 -GKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRG---LTSLRQINRKTREVIGIA-FDDPAYV-TW 363 (686)
T ss_pred -CCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCC---EEEEEEEcCCCCceEEec-CCCCceE-ee
Confidence 223346666766 5789888654223333344555788877764332 356788887666655544 1222222 11
Q ss_pred EEE----C-CEEEE-EccCCCCceeeEEEEEECCCCcEEecc
Q psy17309 693 EVI----D-DMIFA-IGGFNGVTTIYHVECYDEKTDEWYEAT 728 (824)
Q Consensus 693 ~~~----~-~~i~v-~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (824)
... + +.+++ +.+.. .-.+++.||+.+++|+.+.
T Consensus 364 ~~~~~~~~~~~~~~~~ss~~---~P~~~y~~d~~~~~~~~l~ 402 (686)
T PRK10115 364 IAYNPEPETSRLRYGYSSMT---TPDTLFELDMDTGERRVLK 402 (686)
T ss_pred ecccCCCCCceEEEEEecCC---CCCEEEEEECCCCcEEEEE
Confidence 111 1 33333 22222 2357999999999988774
No 152
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=80.49 E-value=13 Score=33.40 Aligned_cols=82 Identities=11% Similarity=0.094 Sum_probs=56.6
Q ss_pred EECCEEEEEccCCCCcccceEEEEEccCCceeEeccc---CCCcceeEEEEECCEEEEEcCcCCCC-CCCcEEEE-ECCC
Q psy17309 92 VIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPM---NFKRCYVSTAVHQDVIYAMGGYNGQR-RQNSVEKY-NYTE 166 (824)
Q Consensus 92 ~~~~~~yv~GG~~~~~~~~~~~~~~~~~~~W~~~~~~---~~~R~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~y-d~~~ 166 (824)
.+||-+|-..-. .....+-+.+||+.+.+|+.+..+ .........+.++|+|-++.-..... ..-++|+. |..+
T Consensus 3 cinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 3 CINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK 81 (129)
T ss_pred EECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence 567777765543 334457799999999999988643 34566778888999998876544322 23477777 4567
Q ss_pred CeEEEecc
Q psy17309 167 NQWSLIAP 174 (824)
Q Consensus 167 ~~W~~~~~ 174 (824)
.+|.+...
T Consensus 82 ~~Wsk~~~ 89 (129)
T PF08268_consen 82 QEWSKKHI 89 (129)
T ss_pred ceEEEEEE
Confidence 78987743
No 153
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=80.19 E-value=75 Score=32.66 Aligned_cols=175 Identities=10% Similarity=0.149 Sum_probs=87.6
Q ss_pred CCEEEEEe--cccCCC-CCCe-EEEEeCC-CCcEEeecCCCcc------cCceE--EEEECCEEEEEcccCC-CCcCCce
Q psy17309 555 QDVIYAMG--GYNGQR-RQNS-VEKYNYT-ENQWSLIAPMNVE------RSDAS--ATTLQGKIYITGGFNG-HNCLNSC 620 (824)
Q Consensus 555 ~~~iyv~G--G~~~~~-~~~~-~~~yd~~-t~~W~~~~~~p~~------r~~~~--~~~~~~~lyv~GG~~~-~~~~~~v 620 (824)
+|+|+++- +..... .... .+..... -.+|+....++.. ..... +..-+|++++. .+.. .......
T Consensus 58 ~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~-~~~~~~~~~~~~ 136 (275)
T PF13088_consen 58 DGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAP-YYHESGGSFSAF 136 (275)
T ss_dssp TSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEE-EEEESSCEEEEE
T ss_pred CCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEE-EeeccccCcceE
Confidence 78988886 222111 1112 2344444 4689887554322 11122 33348888887 2211 1122334
Q ss_pred EEEeCC-CCeEEEcCCCCCC-CcceEEE-EE-CCEEEEEecCCCCCccceEEEEeCC-CCCEEECC--CCCCCCcceEEE
Q psy17309 621 EVYDPE-CNQWTLIEPMRHR-RSGVSCI-AY-HECIYVIGGFNGMSRMCNGEKYNPV-TKTWSQVP--DMYNPRSNFAIE 693 (824)
Q Consensus 621 ~~yd~~-~~~W~~~~~~p~~-r~~~~~~-~~-~~~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~--~~p~~r~~~~~~ 693 (824)
..|..+ -.+|+.....+.. .....+. .. +|+|+++--.. ... .....+... -.+|+... .+|.+.....++
T Consensus 137 ~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~~-~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~ 214 (275)
T PF13088_consen 137 VYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GND-DIYISRSTDGGRTWSPPQPTNLPNPNSSISLV 214 (275)
T ss_dssp EEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SST-EEEEEEESSTTSS-EEEEEEECSSCCEEEEEE
T ss_pred EEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CCC-cEEEEEECCCCCcCCCceecccCcccCCceEE
Confidence 445544 4569988766422 3333333 23 67898887542 111 233344443 46899864 456665555555
Q ss_pred EE-CCEEEEEccCCCCceeeEEEEEECCCCcEEeccCCCC
Q psy17309 694 VI-DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNI 732 (824)
Q Consensus 694 ~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 732 (824)
.+ +++++++.........-.+.+-.-...+|.....+..
T Consensus 215 ~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~ 254 (275)
T PF13088_consen 215 RLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDD 254 (275)
T ss_dssp ECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEE
T ss_pred EcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeC
Confidence 54 6788888773222222234443444789987644433
No 154
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=78.78 E-value=1.1e+02 Score=33.65 Aligned_cols=216 Identities=9% Similarity=0.060 Sum_probs=104.2
Q ss_pred CCCCcEEEcccCCC--CCC-CceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEeccCC-CCcceEEEEEE-CC
Q psy17309 482 TRADRWVKIDQVDP--MGP-RAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN-FKRCYVSTAVH-QD 556 (824)
Q Consensus 482 ~~~~~W~~~~~~~~--~~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~-~~ 556 (824)
=.-.+|.....+.. ... ....++...++..|++|-. ..++.=+-.-.+|+.++..+ .+-........ ++
T Consensus 117 DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~------G~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~ 190 (398)
T PLN00033 117 DGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP------AILLHTSDGGETWERIPLSPKLPGEPVLIKATGPK 190 (398)
T ss_pred CCCCCceECccCcccccccccceeeeEEECCEEEEEcCc------eEEEEEcCCCCCceECccccCCCCCceEEEEECCC
Confidence 34567887432111 111 2234555668888888631 12333333457899876432 12222333344 45
Q ss_pred EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCC----ccc--------------CceEEEEE-CCEEEEEcccCCCCcC
Q psy17309 557 VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMN----VER--------------SDASATTL-QGKIYITGGFNGHNCL 617 (824)
Q Consensus 557 ~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p----~~r--------------~~~~~~~~-~~~lyv~GG~~~~~~~ 617 (824)
.++++|.. ..+++=+-.-.+|+.+...+ ..+ +..++... ++.++++|-.
T Consensus 191 ~~~ivg~~------G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~------ 258 (398)
T PLN00033 191 SAEMVTDE------GAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSR------ 258 (398)
T ss_pred ceEEEecc------ceEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECC------
Confidence 67777742 23555555567898762111 111 11111222 4445555421
Q ss_pred CceEE-EeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCE-----EECCCCCCCCc-ce
Q psy17309 618 NSCEV-YDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTW-----SQVPDMYNPRS-NF 690 (824)
Q Consensus 618 ~~v~~-yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-----~~~~~~p~~r~-~~ 690 (824)
..+++ .|.....|+.+......+........++.++++|.. ..+..-+.....| .+++. +..+. -.
T Consensus 259 G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~------G~l~~S~d~G~~~~~~~f~~~~~-~~~~~~l~ 331 (398)
T PLN00033 259 GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRG------GGLYVSKGTGLTEEDFDFEEADI-KSRGFGIL 331 (398)
T ss_pred ccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCC------ceEEEecCCCCcccccceeeccc-CCCCcceE
Confidence 12332 344344599886433323222223447889988753 2333334344444 44432 22222 22
Q ss_pred EEEEE-CCEEEEEccCCCCceeeEEEEEECCCCcEEecc
Q psy17309 691 AIEVI-DDMIFAIGGFNGVTTIYHVECYDEKTDEWYEAT 728 (824)
Q Consensus 691 ~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (824)
++... ++.++++|... .+..-...-++|+...
T Consensus 332 ~v~~~~d~~~~a~G~~G------~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 332 DVGYRSKKEAWAAGGSG------ILLRSTDGGKSWKRDK 364 (398)
T ss_pred EEEEcCCCcEEEEECCC------cEEEeCCCCcceeEcc
Confidence 23333 67888887642 2444455667999974
No 155
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=78.61 E-value=83 Score=33.95 Aligned_cols=96 Identities=9% Similarity=0.135 Sum_probs=55.4
Q ss_pred CCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCC-----CCCC--CcceEEEEECCEE
Q psy17309 580 ENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEP-----MRHR--RSGVSCIAYHECI 652 (824)
Q Consensus 580 t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-----~p~~--r~~~~~~~~~~~i 652 (824)
.+.|+.+..+ .-..--++.++|++|++.- ...++.+|.+-. =+.+++ +... +...-.+...|+|
T Consensus 189 ~~~Wt~l~~~--~~~~~DIi~~kGkfYAvD~------~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdL 259 (373)
T PLN03215 189 GNVLKALKQM--GYHFSDIIVHKGQTYALDS------IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGEL 259 (373)
T ss_pred CCeeeEccCC--CceeeEEEEECCEEEEEcC------CCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEE
Confidence 4899999642 2224457888999999832 235666664311 122221 1111 1223356667889
Q ss_pred EEEecCCCCC--------------ccceEEEEeCCCCCEEECCCCC
Q psy17309 653 YVIGGFNGMS--------------RMCNGEKYNPVTKTWSQVPDMY 684 (824)
Q Consensus 653 yv~GG~~~~~--------------~~~~v~~yd~~~~~W~~~~~~p 684 (824)
+++....... ..-.|+..|.+..+|.++..+.
T Consensus 260 LmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 260 YIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred EEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 9998742110 1124566688889999988763
No 156
>KOG1724|consensus
Probab=77.60 E-value=2.5 Score=39.41 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=48.0
Q ss_pred ceeEEeeecccchhhhheeecccce-------------------------ecCHhhHHHHHHHHhhcChHhHHHHHHHHH
Q psy17309 246 NSVEKYNYTENQDKIEEKKLFERKL-------------------------HITEDNVASLLLATDFFCMSKAQDLCCDFI 300 (824)
Q Consensus 246 ~~i~l~~~~~~~~~~ll~~~Yt~~l-------------------------~l~~~~v~~ll~~a~~~~i~~l~~~c~~~l 300 (824)
..|.++++....|..+++|++--+- .+..+++.+|+.||++|+|+.|.+.||+.+
T Consensus 44 ~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~v 123 (162)
T KOG1724|consen 44 DPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTV 123 (162)
T ss_pred CccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 4688999999999999999876221 133468899999999999999999999877
Q ss_pred hhcCC
Q psy17309 301 KRLTT 305 (824)
Q Consensus 301 ~~~l~ 305 (824)
...+-
T Consensus 124 a~mik 128 (162)
T KOG1724|consen 124 ANMIK 128 (162)
T ss_pred HHHHc
Confidence 66553
No 157
>KOG1665|consensus
Probab=77.54 E-value=3.6 Score=39.53 Aligned_cols=51 Identities=12% Similarity=0.082 Sum_probs=43.0
Q ss_pred eEEeeecccchhhhheeeccccee-cCHhhHHHHHHHHhhcChHhHHHHHHH
Q psy17309 248 VEKYNYTENQDKIEEKKLFERKLH-ITEDNVASLLLATDFFCMSKAQDLCCD 298 (824)
Q Consensus 248 i~l~~~~~~~~~~ll~~~Yt~~l~-l~~~~v~~ll~~a~~~~i~~l~~~c~~ 298 (824)
-.+-|=++.-|+.||.|+-.|.+. .+.-++..+|+.|++|||-.|++.-++
T Consensus 54 a~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 54 AVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred eEEEccCchhhHHHHHHHhcCceeecCCccHHHHHHHhhHHhhHhHHhHHhh
Confidence 444566888999999999999885 566789999999999999999876665
No 158
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=77.48 E-value=28 Score=36.78 Aligned_cols=232 Identities=16% Similarity=0.130 Sum_probs=102.5
Q ss_pred CCCCceEEEEECCCCcEEE---cccC-CCC-CC-CceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEeccCC-
Q psy17309 471 GSPTDFVETYDTRADRWVK---IDQV-DPM-GP-RAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN- 543 (824)
Q Consensus 471 ~~~~~~~~~yd~~~~~W~~---~~~~-~~~-~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~- 543 (824)
+...+-++.||+.+-+-.. ||.. .+. .+ +...+...-+..+||.- -.+..+|-+.|...++....-+.|
T Consensus 63 G~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N----~TPa~SVtVVDl~~~kvv~ei~~PG 138 (342)
T PF06433_consen 63 GERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQN----FTPATSVTVVDLAAKKVVGEIDTPG 138 (342)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEE----ESSSEEEEEEETTTTEEEEEEEGTS
T ss_pred ccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEc----cCCCCeEEEEECCCCceeeeecCCC
Confidence 3456679999999885432 2221 111 11 22222222255666663 245678999999998875432222
Q ss_pred ------CCcceEEEEEECCEEEEEe-cccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEE--cccCCC
Q psy17309 544 ------FKRCYVSTAVHQDVIYAMG-GYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYIT--GGFNGH 614 (824)
Q Consensus 544 ------~~r~~~~~~~~~~~iyv~G-G~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~--GG~~~~ 614 (824)
.+-.++++.+-+|.+.-+. +.++.........|++..+-.-.-+.....-....-..++|++|-+ +|..
T Consensus 139 C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-- 216 (342)
T PF06433_consen 139 CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-- 216 (342)
T ss_dssp EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS--
T ss_pred EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc--
Confidence 1112344333344443332 1112211223345666554322111111111112224567888773 3321
Q ss_pred CcCCceEEEeCCC-----CeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCC----CCccceEEEEeCCCCCEEECCCC
Q psy17309 615 NCLNSCEVYDPEC-----NQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNG----MSRMCNGEKYNPVTKTWSQVPDM 683 (824)
Q Consensus 615 ~~~~~v~~yd~~~-----~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~----~~~~~~v~~yd~~~~~W~~~~~~ 683 (824)
..-...+...+ ..|..- +. -..+.. .++|||+--... ...-..||+||+++.+=-.--++
T Consensus 217 --~~~~~~~~~~t~~e~~~~WrPG-----G~--Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l 287 (342)
T PF06433_consen 217 --AKFGKPWSLLTDAEKADGWRPG-----GW--QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL 287 (342)
T ss_dssp --EEEEEEEESS-HHHHHTTEEE------SS--S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE
T ss_pred --ccccCcccccCccccccCcCCc-----ce--eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC
Confidence 01112222221 345322 22 223333 689998753211 12356899999998753221122
Q ss_pred CCCCcceEEEEE-CC--EEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 684 YNPRSNFAIEVI-DD--MIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 684 p~~r~~~~~~~~-~~--~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
..+ .-++.+- ++ .||.+-+.+ ..+.+||..+.+-
T Consensus 288 ~~~--~~Si~Vsqd~~P~L~~~~~~~-----~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 288 EHP--IDSIAVSQDDKPLLYALSAGD-----GTLDVYDAATGKL 324 (342)
T ss_dssp EEE--ESEEEEESSSS-EEEEEETTT-----TEEEEEETTT--E
T ss_pred CCc--cceEEEccCCCcEEEEEcCCC-----CeEEEEeCcCCcE
Confidence 111 1133333 33 455442222 2689999998743
No 159
>PRK04043 tolB translocation protein TolB; Provisional
Probab=77.35 E-value=1.2e+02 Score=33.56 Aligned_cols=149 Identities=15% Similarity=0.029 Sum_probs=85.7
Q ss_pred CeEEEEeCCCCcEEeecCCCcccCceEEEEECC-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEEC
Q psy17309 571 NSVEKYNYTENQWSLIAPMNVERSDASATTLQG-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYH 649 (824)
Q Consensus 571 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 649 (824)
.+++++|+.+++=+.+...+..- ......-+| +|.+.-..++ ..+++.+|..++.++.+...+..-....-..-+
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~-~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG 288 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGML-VVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDD 288 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcE-EeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcccCCCccCccEECCCC
Confidence 48999999988766665532211 111222244 5554433222 368999999999998886544311111111224
Q ss_pred CEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEECC-EEEEEccCCCCc---eeeEEEEEECCCCcEE
Q psy17309 650 ECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDD-MIFAIGGFNGVT---TIYHVECYDEKTDEWY 725 (824)
Q Consensus 650 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~---~~~~v~~yd~~~~~W~ 725 (824)
.+||......+ ...++.+|..+.+.+.+..-. .... ...-+| .|.......... ...+++++|++++.++
T Consensus 289 ~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g--~~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~ 362 (419)
T PRK04043 289 KRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHG--KNNS-SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR 362 (419)
T ss_pred CEEEEEECCCC---CceEEEEECCCCCeEeCccCC--CcCc-eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE
Confidence 46777654322 368999999998887764321 1222 222244 454444332111 2257999999999998
Q ss_pred eccC
Q psy17309 726 EATD 729 (824)
Q Consensus 726 ~~~~ 729 (824)
.+..
T Consensus 363 ~LT~ 366 (419)
T PRK04043 363 RLTA 366 (419)
T ss_pred ECCC
Confidence 8854
No 160
>KOG0296|consensus
Probab=76.49 E-value=1.1e+02 Score=32.38 Aligned_cols=143 Identities=14% Similarity=0.193 Sum_probs=81.6
Q ss_pred CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEE--EECCEEEEEcccCCCCcCCceEEEeCC--CCeE
Q psy17309 555 QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASAT--TLQGKIYITGGFNGHNCLNSCEVYDPE--CNQW 630 (824)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~--~~~W 630 (824)
+..+.+.||-+ +..+.++..+..| +..++.-.....++ .+++.+.+.||.++ .+.++... ..+|
T Consensus 75 ~~~l~aTGGgD-----D~AflW~~~~ge~--~~eltgHKDSVt~~~FshdgtlLATGdmsG-----~v~v~~~stg~~~~ 142 (399)
T KOG0296|consen 75 NNNLVATGGGD-----DLAFLWDISTGEF--AGELTGHKDSVTCCSFSHDGTLLATGDMSG-----KVLVFKVSTGGEQW 142 (399)
T ss_pred CCceEEecCCC-----ceEEEEEccCCcc--eeEecCCCCceEEEEEccCceEEEecCCCc-----cEEEEEcccCceEE
Confidence 55677778754 5578888888875 33344444444444 34888889998765 34555544 4457
Q ss_pred EEcCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCCc
Q psy17309 631 TLIEPMRHRRSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVT 709 (824)
Q Consensus 631 ~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~ 709 (824)
....++..- .. +..+ ...|+++|-.+ ..+|.|......-.++-+-+..+...+-..-+||-.+.|-.++
T Consensus 143 ~~~~e~~di-eW--l~WHp~a~illAG~~D-----GsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg-- 212 (399)
T KOG0296|consen 143 KLDQEVEDI-EW--LKWHPRAHILLAGSTD-----GSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDG-- 212 (399)
T ss_pred EeecccCce-EE--EEecccccEEEeecCC-----CcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCc--
Confidence 654222110 00 0111 34566666543 4678888777543343333444444444555788777775544
Q ss_pred eeeEEEEEECCCC
Q psy17309 710 TIYHVECYDEKTD 722 (824)
Q Consensus 710 ~~~~v~~yd~~~~ 722 (824)
.+-+|||.+.
T Consensus 213 ---ti~~Wn~ktg 222 (399)
T KOG0296|consen 213 ---TIIVWNPKTG 222 (399)
T ss_pred ---eEEEEecCCC
Confidence 5777888876
No 161
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=75.79 E-value=1.9e+02 Score=34.87 Aligned_cols=119 Identities=12% Similarity=0.112 Sum_probs=63.1
Q ss_pred eEEEEECCEEEEEeecCCCcccceEEEEECCCCc--eEEeccCCCCc-ceE----EE------------------EEECC
Q psy17309 502 HGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV--WKEIAPMNFKR-CYV----ST------------------AVHQD 556 (824)
Q Consensus 502 ~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r-~~~----~~------------------~~~~~ 556 (824)
.+-+++++.||+... .+.++++|..|++ |+.-+..+..- ..+ ++ +..++
T Consensus 188 ~TPlvvgg~lYv~t~------~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~ 261 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP------HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR 261 (764)
T ss_pred cCCEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCC
Confidence 344566999999754 3568899988776 87654433210 000 01 12344
Q ss_pred EEEEEecccCCCCCCeEEEEeCCCCc--EEe-----------ecCCCccc--CceEEEEECCEEEEEcccCCC-----Cc
Q psy17309 557 VIYAMGGYNGQRRQNSVEKYNYTENQ--WSL-----------IAPMNVER--SDASATTLQGKIYITGGFNGH-----NC 616 (824)
Q Consensus 557 ~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~-----------~~~~p~~r--~~~~~~~~~~~lyv~GG~~~~-----~~ 616 (824)
+||+- ..+ ..+..+|..|.+ |+. +++.+... ...+-++.++.||+ |+.... ..
T Consensus 262 rV~~~-T~D-----g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~~~ 334 (764)
T TIGR03074 262 RIILP-TSD-----ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTDEP 334 (764)
T ss_pred EEEEe-cCC-----CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-EecccccccccCC
Confidence 66653 222 346666766654 431 12222221 22333566787776 543111 23
Q ss_pred CCceEEEeCCCCe--EEEc
Q psy17309 617 LNSCEVYDPECNQ--WTLI 633 (824)
Q Consensus 617 ~~~v~~yd~~~~~--W~~~ 633 (824)
...+..||.+|++ |+.-
T Consensus 335 ~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 335 SGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred CcEEEEEECCCCcEeeEEe
Confidence 4568899999875 6643
No 162
>KOG1332|consensus
Probab=75.55 E-value=91 Score=31.10 Aligned_cols=102 Identities=16% Similarity=0.341 Sum_probs=52.8
Q ss_pred EEEEEcccCCCCcCCceEEEeCCCCeEEEcC----------------CCCCCCcceEEEEECCEEEEEecCCCCCccceE
Q psy17309 604 KIYITGGFNGHNCLNSCEVYDPECNQWTLIE----------------PMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNG 667 (824)
Q Consensus 604 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~----------------~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v 667 (824)
+-++.||.+. +-.++.|| .++|..-. ....++...+.+.-+++++|.-
T Consensus 176 krlvSgGcDn---~VkiW~~~--~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt----------- 239 (299)
T KOG1332|consen 176 KRLVSGGCDN---LVKIWKFD--SDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT----------- 239 (299)
T ss_pred ceeeccCCcc---ceeeeecC--CcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE-----------
Confidence 4578888764 22344444 44665432 2234555555666666666542
Q ss_pred EEEeCCCCCEEEC--CCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCC-CcEEeccC
Q psy17309 668 EKYNPVTKTWSQV--PDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKT-DEWYEATD 729 (824)
Q Consensus 668 ~~yd~~~~~W~~~--~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~-~~W~~~~~ 729 (824)
-+-+..+|+.- .+.|.+....+-..-++-|-|-||.+ .+.+|-+.. ++|.+++.
T Consensus 240 --~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN------kvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 240 --KDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN------KVTLWKENVDGKWEEVGE 296 (299)
T ss_pred --ecCccCcccccccccCCcceEEEEEeccccEEEEecCCc------EEEEEEeCCCCcEEEccc
Confidence 23345667653 34555444333333344444555532 344554444 48998854
No 163
>PRK02889 tolB translocation protein TolB; Provisional
Probab=75.02 E-value=1.4e+02 Score=33.14 Aligned_cols=182 Identities=7% Similarity=-0.066 Sum_probs=89.0
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECC-EEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD-VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 602 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 602 (824)
..++.+|..+++=..+...+... ......-++ +|++....++ ..++|.+|..+...+.+..-.... ......-+
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~~-~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~-~~~~wSpD 294 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGSN-SAPAWSPDGRTLAVALSRDG---NSQIYTVNADGSGLRRLTQSSGID-TEPFFSPD 294 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCCc-cceEECCCCCEEEEEEccCC---CceEEEEECCCCCcEECCCCCCCC-cCeEEcCC
Confidence 56999999888655555443211 112222244 5554433222 367899998877766654422111 11122225
Q ss_pred CEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCE-EEEEecCCCCCccceEEEEeCCCCCEEECC
Q psy17309 603 GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHEC-IYVIGGFNGMSRMCNGEKYNPVTKTWSQVP 681 (824)
Q Consensus 603 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 681 (824)
|+-.++....+ ....++.+|..+...+.+..- ..........-+|+ |+......+ ...++.+|+.+.+.+.+.
T Consensus 295 G~~l~f~s~~~--g~~~Iy~~~~~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~s~~~g---~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 295 GRSIYFTSDRG--GAPQIYRMPASGGAAQRVTFT-GSYNTSPRISPDGKLLAYISRVGG---AFKLYVQDLATGQVTALT 368 (427)
T ss_pred CCEEEEEecCC--CCcEEEEEECCCCceEEEecC-CCCcCceEECCCCCEEEEEEccCC---cEEEEEEECCCCCeEEcc
Confidence 54333332211 124688888877777665421 11111112222444 444333221 237899999888877764
Q ss_pred CCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECC
Q psy17309 682 DMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEK 720 (824)
Q Consensus 682 ~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 720 (824)
.-. ........-+++.+++....++. ..++..+..
T Consensus 369 ~~~--~~~~p~~spdg~~l~~~~~~~g~--~~l~~~~~~ 403 (427)
T PRK02889 369 DTT--RDESPSFAPNGRYILYATQQGGR--SVLAAVSSD 403 (427)
T ss_pred CCC--CccCceECCCCCEEEEEEecCCC--EEEEEEECC
Confidence 321 11111223366655554433321 246666653
No 164
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=74.95 E-value=0.91 Score=38.35 Aligned_cols=52 Identities=17% Similarity=0.147 Sum_probs=37.5
Q ss_pred ccceeEEeeecccchhhhheeecc-cceecC-HhhHHHHHHHHhhcChHhH-HHHH
Q psy17309 244 RQNSVEKYNYTENQDKIEEKKLFE-RKLHIT-EDNVASLLLATDFFCMSKA-QDLC 296 (824)
Q Consensus 244 ~~~~i~l~~~~~~~~~~ll~~~Yt-~~l~l~-~~~v~~ll~~a~~~~i~~l-~~~c 296 (824)
.+..+-+ |=++..|+.||+|+-+ +.+... ......+++-|++|+++.+ ++.|
T Consensus 40 ~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 40 DDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp TTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred ccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHHHHHHHHHHcCCCccccCCC
Confidence 3344544 5689999999999999 677664 5678999999999999999 7776
No 165
>KOG2838|consensus
Probab=74.60 E-value=2.3 Score=42.02 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=44.7
Q ss_pred cceeEEeee-cccch-hhhheeecccceecCH----------------------------hhHHHHHHHHhhcChHhHHH
Q psy17309 245 QNSVEKYNY-TENQD-KIEEKKLFERKLHITE----------------------------DNVASLLLATDFFCMSKAQD 294 (824)
Q Consensus 245 ~~~i~l~~~-~~~~~-~~ll~~~Yt~~l~l~~----------------------------~~v~~ll~~a~~~~i~~l~~ 294 (824)
-.+|.+.++ -+.+| .+++.+|||+.++++- ..+++|+++|-+|.++-|.+
T Consensus 299 PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQ 378 (401)
T KOG2838|consen 299 PKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQ 378 (401)
T ss_pred CceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555543 35555 4689999999987654 23567777777777777777
Q ss_pred HHHHHHhhcCCcchHHH
Q psy17309 295 LCCDFIKRLTTPRNCFG 311 (824)
Q Consensus 295 ~c~~~l~~~l~~~N~~~ 311 (824)
.|++.+......+|..+
T Consensus 379 a~e~Vir~acaadlsn~ 395 (401)
T KOG2838|consen 379 ACEDVIRKACAADLSNG 395 (401)
T ss_pred HHHHHHHhhhhhhcccc
Confidence 77777776665555443
No 166
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=74.08 E-value=1.4e+02 Score=32.42 Aligned_cols=232 Identities=9% Similarity=-0.037 Sum_probs=103.8
Q ss_pred CEEEEEccCCCCCCCceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEE-EEeecCCCcccceEEEEECCCCceEE
Q psy17309 460 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIY-VIGGFDGNEYYNSCRCFNAVTKVWKE 538 (824)
Q Consensus 460 ~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~ly-v~GG~~~~~~~~~~~~yd~~~~~W~~ 538 (824)
+.-++|++.. .....++..|..+.+-.++...+. ....+...+.-+..+| +-.+ ..++..|+.|.+=+.
T Consensus 47 G~kllF~s~~--dg~~nly~lDL~t~~i~QLTdg~g-~~~~g~~~s~~~~~~~Yv~~~-------~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 47 GRKLLFASDF--DGNRNLYLLDLATGEITQLTDGPG-DNTFGGFLSPDDRALYYVKNG-------RSLRRVDLDTLEERV 116 (386)
T ss_dssp S-EEEEEE-T--TSS-EEEEEETTT-EEEE---SS--B-TTT-EE-TTSSEEEEEETT-------TEEEEEETTT--EEE
T ss_pred CCEEEEEecc--CCCcceEEEEcccCEEEECccCCC-CCccceEEecCCCeEEEEECC-------CeEEEEECCcCcEEE
Confidence 4444554432 234567899999999998654321 1122222222245554 4333 578999999987666
Q ss_pred eccCCCCcceEEEEEE--CCEEEEEeccc------------------CCCCCCeEEEEeCCCCcEEeecCCCcccCceEE
Q psy17309 539 IAPMNFKRCYVSTAVH--QDVIYAMGGYN------------------GQRRQNSVEKYNYTENQWSLIAPMNVERSDASA 598 (824)
Q Consensus 539 ~~~~~~~r~~~~~~~~--~~~iyv~GG~~------------------~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 598 (824)
+-..|..-.+....+. ++.. ++|=.. .......+...|..+.+.+.+-.-. ..-+|.-
T Consensus 117 vy~~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~wlgH~~ 194 (386)
T PF14583_consen 117 VYEVPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-DWLGHVQ 194 (386)
T ss_dssp EEE--TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S-EEEEE
T ss_pred EEECCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-ccccCcc
Confidence 6666655444444333 2333 333110 1123456777888888776552211 1112222
Q ss_pred EE-ECCEEEEEcccCCCCcC-CceEEEeCCCCeEEEcC-CCCCCCcceEEEEECCE-EEEEecCCCCCccceEEEEeCCC
Q psy17309 599 TT-LQGKIYITGGFNGHNCL-NSCEVYDPECNQWTLIE-PMRHRRSGVSCIAYHEC-IYVIGGFNGMSRMCNGEKYNPVT 674 (824)
Q Consensus 599 ~~-~~~~lyv~GG~~~~~~~-~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~~ 674 (824)
.. .+..+.++--....... ..+|..|.......++. .++....+|---..+|. |+..+... .....-+..||+++
T Consensus 195 fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~-~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 195 FSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTP-GGQDFWIAGYDPDT 273 (386)
T ss_dssp EETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEET-TT--EEEEEE-TTT
T ss_pred cCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecC-CCCceEEEeeCCCC
Confidence 21 13344444111111223 47899998766655554 33333344444444554 44434322 22234578899988
Q ss_pred CCEEECCCCCCCCcceEEEEECCEEEEEccCC
Q psy17309 675 KTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFN 706 (824)
Q Consensus 675 ~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 706 (824)
..=+.+..+ +.+.|-....++++++--|.+
T Consensus 274 ~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 274 GERRRLMEM--PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp --EEEEEEE---SEEEEEE-TTSSEEEEEE--
T ss_pred CCceEEEeC--CceeeeEEcCCCCEEEecCCC
Confidence 754444444 357777888899999887764
No 167
>KOG2321|consensus
Probab=73.85 E-value=30 Score=38.52 Aligned_cols=104 Identities=16% Similarity=0.245 Sum_probs=58.8
Q ss_pred CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEEC--CEEEEEecCCCCCccceEEEEeCCCCCEEE
Q psy17309 602 QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYH--ECIYVIGGFNGMSRMCNGEKYNPVTKTWSQ 679 (824)
Q Consensus 602 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 679 (824)
.-.||+.|- -.+|++++++.+.|- .|+...-...-++.++ ..|+++||.+ ..|+.+|+.+.+=..
T Consensus 145 scDly~~gs------g~evYRlNLEqGrfL--~P~~~~~~~lN~v~in~~hgLla~Gt~~-----g~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 145 SCDLYLVGS------GSEVYRLNLEQGRFL--NPFETDSGELNVVSINEEHGLLACGTED-----GVVEFWDPRDKSRVG 211 (703)
T ss_pred CccEEEeec------CcceEEEEccccccc--cccccccccceeeeecCccceEEecccC-----ceEEEecchhhhhhe
Confidence 345777653 268999999999983 3443333333344443 6688888854 578999997754221
Q ss_pred -------CCCCCCCCcceEE--EEE-CCEE-EEEccCCCCceeeEEEEEECCCCc
Q psy17309 680 -------VPDMYNPRSNFAI--EVI-DDMI-FAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 680 -------~~~~p~~r~~~~~--~~~-~~~i-~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
+...|..-...++ ..+ ++-| +-+|-.++ .+++||+.+.+
T Consensus 212 ~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G-----~v~iyDLRa~~ 261 (703)
T KOG2321|consen 212 TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG-----SVLIYDLRASK 261 (703)
T ss_pred eeecccccCCCccccccCcceEEEecCCceeEEeeccCC-----cEEEEEcccCC
Confidence 2223332222223 333 3244 44443333 57888887754
No 168
>KOG0783|consensus
Probab=73.72 E-value=8.2 Score=44.61 Aligned_cols=49 Identities=10% Similarity=0.042 Sum_probs=34.9
Q ss_pred eEEeeecccchhhhheeecccceec--CH-------------------hhHHHHHHHHhhcChHhHHHHH
Q psy17309 248 VEKYNYTENQDKIEEKKLFERKLHI--TE-------------------DNVASLLLATDFFCMSKAQDLC 296 (824)
Q Consensus 248 i~l~~~~~~~~~~ll~~~Yt~~l~l--~~-------------------~~v~~ll~~a~~~~i~~l~~~c 296 (824)
|.+.++.+..|+.||+||||+.+-- ++ .++..+...+..|++..|....
T Consensus 612 ~~ve~i~p~mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~ 681 (1267)
T KOG0783|consen 612 IRVEDIPPLMFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFS 681 (1267)
T ss_pred eeeccCCHHHHHHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhh
Confidence 3355778899999999999984311 11 2355688888888888777653
No 169
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=73.48 E-value=46 Score=35.85 Aligned_cols=231 Identities=10% Similarity=-0.068 Sum_probs=105.2
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCC-cceEEEEEECCEEEEE-ecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFK-RCYVSTAVHQDVIYAM-GGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~~~~~~iyv~-GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
++.-++|+|.. .....++..|..+.+-.++...+.. ..+..++.-+..+|-+ .+ ..++..|+.|.+=+.
T Consensus 46 dG~kllF~s~~--dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~-------~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 46 DGRKLLFASDF--DGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG-------RSLRRVDLDTLEERV 116 (386)
T ss_dssp TS-EEEEEE-T--TSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT-------TEEEEEETTT--EEE
T ss_pred CCCEEEEEecc--CCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC-------CeEEEEECCcCcEEE
Confidence 45555666542 2236789999999999999887632 3333333335565444 33 578899999987666
Q ss_pred ecCCCcccCceEEEEEC--CEEEEEccc----CC--------------CCcCCceEEEeCCCCeEEEcCCCCCCCcceEE
Q psy17309 586 IAPMNVERSDASATTLQ--GKIYITGGF----NG--------------HNCLNSCEVYDPECNQWTLIEPMRHRRSGVSC 645 (824)
Q Consensus 586 ~~~~p~~r~~~~~~~~~--~~lyv~GG~----~~--------------~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~ 645 (824)
+-..|..-.+....+.+ +..+ +|=. +. ......+..-|..+++.+.+-.-. ...+|.-
T Consensus 117 vy~~p~~~~g~gt~v~n~d~t~~-~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~wlgH~~ 194 (386)
T PF14583_consen 117 VYEVPDDWKGYGTWVANSDCTKL-VGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-DWLGHVQ 194 (386)
T ss_dssp EEE--TTEEEEEEEEE-TTSSEE-EEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S-EEEEE
T ss_pred EEECCcccccccceeeCCCccEE-EEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-ccccCcc
Confidence 76667665554444442 3332 2211 00 023455677788887776653211 1112222
Q ss_pred E-EECCEEEEEecCCCCCcc-ceEEEEeCCCCCEEECC-CCCCCCcceEEEEECC-EEEEEccCCCCceeeEEEEEECCC
Q psy17309 646 I-AYHECIYVIGGFNGMSRM-CNGEKYNPVTKTWSQVP-DMYNPRSNFAIEVIDD-MIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 646 ~-~~~~~iyv~GG~~~~~~~-~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
. ..+..+.++.-...-... ..+|..|........+- .++.-..+|---..+| .|+..+...+ ..-.-+..||+++
T Consensus 195 fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~-~~~~~i~~~d~~t 273 (386)
T PF14583_consen 195 FSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPG-GQDFWIAGYDPDT 273 (386)
T ss_dssp EETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETT-T--EEEEEE-TTT
T ss_pred cCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCC-CCceEEEeeCCCC
Confidence 1 224455555322222222 47899998776666653 2222222333333344 4444444322 2223578899998
Q ss_pred CcEEeccCCCCCccceeEEEEcCccceeccc
Q psy17309 722 DEWYEATDMNIYRSALSACVIMGLPNVYDYI 752 (824)
Q Consensus 722 ~~W~~~~~~p~~r~~~~~~~~~~~~~~~~~~ 752 (824)
..=+.+..+| ++.|=.+..++.+++..+.
T Consensus 274 ~~~~~~~~~p--~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 274 GERRRLMEMP--WCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp --EEEEEEE---SEEEEEE-TTSSEEEEEE-
T ss_pred CCceEEEeCC--ceeeeEEcCCCCEEEecCC
Confidence 7544444454 5667677778888887654
No 170
>PRK01742 tolB translocation protein TolB; Provisional
Probab=73.08 E-value=1.6e+02 Score=32.79 Aligned_cols=182 Identities=10% Similarity=-0.046 Sum_probs=86.5
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECC
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQG 603 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~ 603 (824)
..++..|.....=..+...... ...-...-+|...++...... ...++.+|..+..-+.+...+..-. .....-+|
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~-v~~p~wSPDG~~la~~s~~~~--~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG 259 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQP-LMSPAWSPDGSKLAYVSFENK--KSQLVVHDLRSGARKVVASFRGHNG-APAFSPDG 259 (429)
T ss_pred EEEEEECCCCCCceEeccCCCc-cccceEcCCCCEEEEEEecCC--CcEEEEEeCCCCceEEEecCCCccC-ceeECCCC
Confidence 5677777665432222221111 111122224544444443221 2568999998877666655443211 11222255
Q ss_pred EEEEEcc-cCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCE-EEEEecCCCCCccceEEEEeCCCCCEEECC
Q psy17309 604 KIYITGG-FNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHEC-IYVIGGFNGMSRMCNGEKYNPVTKTWSQVP 681 (824)
Q Consensus 604 ~lyv~GG-~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 681 (824)
+..+++. .++ ..+++.+|..+.....+..-... .......-+|+ |+......+ ...++.+|.....-+.+.
T Consensus 260 ~~La~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~ 332 (429)
T PRK01742 260 SRLAFASSKDG---VLNIYVMGANGGTPSQLTSGAGN-NTEPSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASLVG 332 (429)
T ss_pred CEEEEEEecCC---cEEEEEEECCCCCeEeeccCCCC-cCCEEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEec
Confidence 5444433 222 13588889888777666432211 11112222554 544433222 246777777655433332
Q ss_pred CCCCCCcceEEEEECC-EEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 682 DMYNPRSNFAIEVIDD-MIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 682 ~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
. ... .....-++ .|++.++ +.+..+|+.+..+..+
T Consensus 333 ~---~~~-~~~~SpDG~~ia~~~~-------~~i~~~Dl~~g~~~~l 368 (429)
T PRK01742 333 G---RGY-SAQISADGKTLVMING-------DNVVKQDLTSGSTEVL 368 (429)
T ss_pred C---CCC-CccCCCCCCEEEEEcC-------CCEEEEECCCCCeEEe
Confidence 1 111 11122244 4555443 2467789998888765
No 171
>KOG0281|consensus
Probab=72.98 E-value=1.3e+02 Score=31.56 Aligned_cols=110 Identities=12% Similarity=0.310 Sum_probs=67.7
Q ss_pred cCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeC
Q psy17309 593 RSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNP 672 (824)
Q Consensus 593 r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 672 (824)
|....++-++++..|... . -.++-+++..|... +..+...+.+.+++.++|++.|.|..+ +++-.+|.
T Consensus 320 rAaVNvVdfd~kyIVsAS-g----DRTikvW~~st~ef--vRtl~gHkRGIAClQYr~rlvVSGSSD-----ntIRlwdi 387 (499)
T KOG0281|consen 320 RAAVNVVDFDDKYIVSAS-G----DRTIKVWSTSTCEF--VRTLNGHKRGIACLQYRDRLVVSGSSD-----NTIRLWDI 387 (499)
T ss_pred hhheeeeccccceEEEec-C----CceEEEEeccceee--ehhhhcccccceehhccCeEEEecCCC-----ceEEEEec
Confidence 333344445777444322 1 25677788776654 455666778888999999999988764 56777887
Q ss_pred CCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 673 VTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 673 ~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
+.+.--.+-. ..-.-..++.++++=+|.||+++ .+-++|..+
T Consensus 388 ~~G~cLRvLe--GHEeLvRciRFd~krIVSGaYDG-----kikvWdl~a 429 (499)
T KOG0281|consen 388 ECGACLRVLE--GHEELVRCIRFDNKRIVSGAYDG-----KIKVWDLQA 429 (499)
T ss_pred cccHHHHHHh--chHHhhhheeecCceeeeccccc-----eEEEEeccc
Confidence 6654222210 01111235778999999999887 455555443
No 172
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=72.63 E-value=2.7e+02 Score=35.19 Aligned_cols=195 Identities=9% Similarity=0.033 Sum_probs=104.9
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCC----------CC--cceEEEEEE--CCEEEEEecccCCCCCCeE
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN----------FK--RCYVSTAVH--QDVIYAMGGYNGQRRQNSV 573 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~----------~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 573 (824)
++.|||.-- ..+.+.++|+....-..+.... .. ..-+++++. ++.|||.-.. .+.+
T Consensus 579 ~g~lyVaDs-----~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~-----n~~I 648 (1057)
T PLN02919 579 NNRLFISDS-----NHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE-----NHAL 648 (1057)
T ss_pred CCeEEEEEC-----CCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC-----CceE
Confidence 678888742 2367888888655433333210 00 112445544 4678987542 2568
Q ss_pred EEEeCCCCcEEeecCC-------Cc--------ccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCC
Q psy17309 574 EKYNYTENQWSLIAPM-------NV--------ERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPM 636 (824)
Q Consensus 574 ~~yd~~t~~W~~~~~~-------p~--------~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 636 (824)
.++|+.++.=+.++.- .. -...+.+++- ++.|||.... .+.+++||+.++....+..-
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----~~~I~v~d~~~g~v~~~~G~ 723 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----QHQIWEYNISDGVTRVFSGD 723 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----CCeEEEEECCCCeEEEEecC
Confidence 8888887765544210 00 0112234433 6789987542 25688899877765443210
Q ss_pred ----------CC---CCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEEECC--C--CCC------------
Q psy17309 637 ----------RH---RRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP--D--MYN------------ 685 (824)
Q Consensus 637 ----------p~---~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~--~p~------------ 685 (824)
+. ...-.+++.. ++.|||....+ +.|.+||+.+...+.+. . .+.
T Consensus 724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n-----~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g 798 (1057)
T PLN02919 724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES-----SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG 798 (1057)
T ss_pred CccccCCCCccccccccCccEEEEeCCCCEEEEEECCC-----CeEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence 00 0111223332 34599987643 67899998876533221 0 000
Q ss_pred --CC--cceEEEE-ECCEEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 686 --PR--SNFAIEV-IDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 686 --~r--~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
.. .-.+++. -+|.|||....+ +.|.+||++++....+
T Consensus 799 ~~~~l~~P~Gvavd~dG~LYVADs~N-----~rIrviD~~tg~v~ti 840 (1057)
T PLN02919 799 SEVLLQHPLGVLCAKDGQIYVADSYN-----HKIKKLDPATKRVTTL 840 (1057)
T ss_pred hhhhccCCceeeEeCCCcEEEEECCC-----CEEEEEECCCCeEEEE
Confidence 00 0112222 367899986543 3799999998887765
No 173
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=72.58 E-value=1.4e+02 Score=32.04 Aligned_cols=67 Identities=13% Similarity=0.084 Sum_probs=40.7
Q ss_pred CCEEEEEe-cCC-C--CCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE-C-C-EEEEEccCCCCceeeEEEEEECCC
Q psy17309 649 HECIYVIG-GFN-G--MSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI-D-D-MIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 649 ~~~iyv~G-G~~-~--~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~-~-~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
++++||.. |.. + ....+.++++|+.+ ++.+..++..+..++++.- + . .+|+.-+.+ +++.++|..+
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t--~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s-----~~VsViD~~t 331 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKT--GKRLRKIELGHEIDSINVSQDAKPLLYALSTGD-----KTLYIFDAET 331 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCC--CeEEEEEeCCCceeeEEECCCCCeEEEEeCCCC-----CcEEEEECcC
Confidence 68899843 211 1 12346899999754 4555555555555565554 3 3 566665432 3688999887
Q ss_pred C
Q psy17309 722 D 722 (824)
Q Consensus 722 ~ 722 (824)
.
T Consensus 332 ~ 332 (352)
T TIGR02658 332 G 332 (352)
T ss_pred C
Confidence 6
No 174
>KOG0318|consensus
Probab=72.24 E-value=25 Score=38.64 Aligned_cols=107 Identities=18% Similarity=0.249 Sum_probs=71.4
Q ss_pred CcCeEEEEEE--CCEEEEEccCCCCcccceEEEEEccCCceeEecccCCCcceeEEEEE--CCEEEEEcCcCCCCCCCcE
Q psy17309 84 PRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSV 159 (824)
Q Consensus 84 ~R~~h~~~~~--~~~~yv~GG~~~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~ 159 (824)
.++.-+++++ ++...++||.|+. +++|.+....=.+.......|...+.+.+ ++.+++.|-....-.+-++
T Consensus 442 ~~y~~s~vAv~~~~~~vaVGG~Dgk-----vhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~ 516 (603)
T KOG0318|consen 442 IGYESSAVAVSPDGSEVAVGGQDGK-----VHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDV 516 (603)
T ss_pred cccccceEEEcCCCCEEEEecccce-----EEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEc
Confidence 4555555554 6678888997665 78888887666666666667888887777 3466666644433333344
Q ss_pred EEEECCCCeEE-EeccccceeeccCCeEEEEcccCCc
Q psy17309 160 EKYNYTENQWS-LIAPMNCMIQNVTYNIYVIGGFDGN 195 (824)
Q Consensus 160 ~~yd~~~~~W~-~~~~~~~~~~~~~~~i~v~GG~~~~ 195 (824)
+.....++.|. +-+...|..-..+++++..|+.+..
T Consensus 517 ~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~ 553 (603)
T KOG0318|consen 517 ASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTN 553 (603)
T ss_pred ccCceecceeeeeeeeEEEEEeCCCceEEEeccccce
Confidence 44444666787 5566666666778899999998865
No 175
>PTZ00421 coronin; Provisional
Probab=71.46 E-value=1.9e+02 Score=32.92 Aligned_cols=152 Identities=9% Similarity=0.044 Sum_probs=72.5
Q ss_pred CEEEEEeecCCCcccceEEEEECCCCceE-EeccCCCCcceEEEEE-ECCEEEEEecccCCCCCCeEEEEeCCCCcEE-e
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFNAVTKVWK-EIAPMNFKRCYVSTAV-HQDVIYAMGGYNGQRRQNSVEKYNYTENQWS-L 585 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~-~ 585 (824)
+.+++.||.+ ..+.+||..+++-. .+.... ..-.+++. .++.+++.|+.+ ..+.+||+.+.+-. .
T Consensus 138 ~~iLaSgs~D-----gtVrIWDl~tg~~~~~l~~h~--~~V~sla~spdG~lLatgs~D-----g~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 138 MNVLASAGAD-----MVVNVWDVERGKAVEVIKCHS--DQITSLEWNLDGSLLCTTSKD-----KKLNIIDPRDGTIVSS 205 (493)
T ss_pred CCEEEEEeCC-----CEEEEEECCCCeEEEEEcCCC--CceEEEEEECCCCEEEEecCC-----CEEEEEECCCCcEEEE
Confidence 4577777754 45888998876432 121111 11122222 267777777754 46888999876521 1
Q ss_pred ecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeE--EEcCCCCCCCcceEEEEE--CCEEEEEecCCCC
Q psy17309 586 IAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQW--TLIEPMRHRRSGVSCIAY--HECIYVIGGFNGM 661 (824)
Q Consensus 586 ~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W--~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~ 661 (824)
+..-...+........++..++..|.+. .....+..||+.+..- ... .... .....+..+ ++.++++||..
T Consensus 206 l~~H~~~~~~~~~w~~~~~~ivt~G~s~-s~Dr~VklWDlr~~~~p~~~~-~~d~-~~~~~~~~~d~d~~~L~lggkg-- 280 (493)
T PTZ00421 206 VEAHASAKSQRCLWAKRKDLIITLGCSK-SQQRQIMLWDTRKMASPYSTV-DLDQ-SSALFIPFFDEDTNLLYIGSKG-- 280 (493)
T ss_pred EecCCCCcceEEEEcCCCCeEEEEecCC-CCCCeEEEEeCCCCCCceeEe-ccCC-CCceEEEEEcCCCCEEEEEEeC--
Confidence 2111111111111122333444444432 1135688899865331 111 1111 111222223 45666666632
Q ss_pred CccceEEEEeCCCCCEEE
Q psy17309 662 SRMCNGEKYNPVTKTWSQ 679 (824)
Q Consensus 662 ~~~~~v~~yd~~~~~W~~ 679 (824)
-..|.+||..+.+...
T Consensus 281 --Dg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 281 --EGNIRCFELMNERLTF 296 (493)
T ss_pred --CCeEEEEEeeCCceEE
Confidence 1457788887766443
No 176
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=70.34 E-value=12 Score=31.90 Aligned_cols=60 Identities=15% Similarity=0.136 Sum_probs=40.8
Q ss_pred HHHHHHHHhhcChHhHHHHHHHHHhhcCC------------cchHHHHHHHHHHc---CCHHHHHHHHHHHHHHHH
Q psy17309 277 VASLLLATDFFCMSKAQDLCCDFIKRLTT------------PRNCFGILLFSRDH---FCKKLEEWTRKYILRNFV 337 (824)
Q Consensus 277 v~~ll~~a~~~~i~~l~~~c~~~l~~~l~------------~~N~~~i~~~a~~~---~~~~L~~~~~~~i~~~f~ 337 (824)
|.+++..|..+++.+|.+.|.+|+..++. .+-...++.- +.. .-.++.+++.+|+..+..
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~-~~l~v~~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSS-DDLNVSSEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHT-SS--ECTCCCHHHHHHHHHHCTHH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhc-cccccccHHHHHHHHHHHHHhCHH
Confidence 46789999999999999999999988754 1222223222 222 224688888889888765
No 177
>KOG0649|consensus
Probab=69.54 E-value=1.2e+02 Score=30.10 Aligned_cols=149 Identities=17% Similarity=0.179 Sum_probs=81.1
Q ss_pred ceEEeccCCC-----Ccce-EEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCEEE
Q psy17309 535 VWKEIAPMNF-----KRCY-VSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGKIY 606 (824)
Q Consensus 535 ~W~~~~~~~~-----~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~ly 606 (824)
.|+..+|+.. |--+ ..+.--.|.|+..||. ..++..|.++.+-+..= -...-+-|+++.- ++.|
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD------~~~y~~dlE~G~i~r~~-rGHtDYvH~vv~R~~~~qi- 171 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD------GVIYQVDLEDGRIQREY-RGHTDYVHSVVGRNANGQI- 171 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCC------eEEEEEEecCCEEEEEE-cCCcceeeeeeecccCcce-
Confidence 4776666543 3222 2233346889998883 46788899998876541 1122344555542 3443
Q ss_pred EEcccCCCCcCCceEEEeCCCCeEEEc-CC-----CCCC--CcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEE
Q psy17309 607 ITGGFNGHNCLNSCEVYDPECNQWTLI-EP-----MRHR--RSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWS 678 (824)
Q Consensus 607 v~GG~~~~~~~~~v~~yd~~~~~W~~~-~~-----~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 678 (824)
+.|+.++ ++-.+|.+|.+=..+ .+ +..| -...++...+..-.|.||. ..+-.+++.+.+=+
T Consensus 172 lsG~EDG-----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG------p~lslwhLrsse~t 240 (325)
T KOG0649|consen 172 LSGAEDG-----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG------PKLSLWHLRSSEST 240 (325)
T ss_pred eecCCCc-----cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC------CceeEEeccCCCce
Confidence 3465553 567788888765443 21 1121 2333566667677777763 45566777666655
Q ss_pred ECCCCCCCCcceEEEEECCEEEEEccC
Q psy17309 679 QVPDMYNPRSNFAIEVIDDMIFAIGGF 705 (824)
Q Consensus 679 ~~~~~p~~r~~~~~~~~~~~i~v~GG~ 705 (824)
.+-+.|.+ .+- +.+.++.+++||.
T Consensus 241 ~vfpipa~--v~~-v~F~~d~vl~~G~ 264 (325)
T KOG0649|consen 241 CVFPIPAR--VHL-VDFVDDCVLIGGE 264 (325)
T ss_pred EEEecccc--eeE-eeeecceEEEecc
Confidence 55444432 233 3344445555553
No 178
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=67.25 E-value=2.9e+02 Score=33.38 Aligned_cols=117 Identities=10% Similarity=0.117 Sum_probs=61.5
Q ss_pred EEEEECCEEEEEecccCCCCCCeEEEEeCCCCc--EEeecCCCccc-Cce----E------------------EEEECCE
Q psy17309 550 STAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ--WSLIAPMNVER-SDA----S------------------ATTLQGK 604 (824)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~r-~~~----~------------------~~~~~~~ 604 (824)
+-+++++.||+... .+.++.+|..|.+ |+.-+..+..- ..+ + .+..+++
T Consensus 189 TPlvvgg~lYv~t~------~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~r 262 (764)
T TIGR03074 189 TPLKVGDTLYLCTP------HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARR 262 (764)
T ss_pred CCEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCE
Confidence 34667999999854 3567888887654 77554333110 000 0 1123446
Q ss_pred EEEEcccCCCCcCCceEEEeCCCCe--EEEc-----------CCCCCCC--cceEEEEECCEEEEEecCCCC-----Ccc
Q psy17309 605 IYITGGFNGHNCLNSCEVYDPECNQ--WTLI-----------EPMRHRR--SGVSCIAYHECIYVIGGFNGM-----SRM 664 (824)
Q Consensus 605 lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~-----------~~~p~~r--~~~~~~~~~~~iyv~GG~~~~-----~~~ 664 (824)
||+ +..+ ..+..+|.+|++ |..- ...+... ...+-++.++.||+ |+.... ...
T Consensus 263 V~~-~T~D-----g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~~~~ 335 (764)
T TIGR03074 263 IIL-PTSD-----ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTDEPS 335 (764)
T ss_pred EEE-ecCC-----CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-EecccccccccCCC
Confidence 665 3222 346777777664 5421 1112111 12233566777776 542111 224
Q ss_pred ceEEEEeCCCCC--EEE
Q psy17309 665 CNGEKYNPVTKT--WSQ 679 (824)
Q Consensus 665 ~~v~~yd~~~~~--W~~ 679 (824)
..+..||.++.+ |+-
T Consensus 336 G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 336 GVIRAFDVNTGALVWAW 352 (764)
T ss_pred cEEEEEECCCCcEeeEE
Confidence 568899998864 654
No 179
>KOG4350|consensus
Probab=66.84 E-value=7.7 Score=40.84 Aligned_cols=32 Identities=22% Similarity=0.481 Sum_probs=28.7
Q ss_pred cCHhhHHHHHHHHhhcChHhHHHHHHHHHhhc
Q psy17309 272 ITEDNVASLLLATDFFCMSKAQDLCCDFIKRL 303 (824)
Q Consensus 272 l~~~~v~~ll~~a~~~~i~~l~~~c~~~l~~~ 303 (824)
+..+|+..++.+|.+||+++|.+.|..|+.++
T Consensus 145 L~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrn 176 (620)
T KOG4350|consen 145 LKNENVCMIFDAAYLYQLTDLTDYCMMFMDRN 176 (620)
T ss_pred HcccceeeeeeHHHHhcchHHHHHHHHHHhcC
Confidence 45589999999999999999999999999764
No 180
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=65.18 E-value=96 Score=33.73 Aligned_cols=179 Identities=13% Similarity=0.070 Sum_probs=90.3
Q ss_pred cceEEEEECCCCce-EEeccCCCCcceEEEEEE---CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEE
Q psy17309 523 YNSCRCFNAVTKVW-KEIAPMNFKRCYVSTAVH---QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASA 598 (824)
Q Consensus 523 ~~~~~~yd~~~~~W-~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~ 598 (824)
.+.+...|..+++- ..++... .-|..... +..+|+.+. + ..+-++|+.+.+ .+...+.+....++
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~s~Dgr~~yv~~r-d-----g~vsviD~~~~~--~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGG---APHAGLKFSPDGRYLYVANR-D-----GTVSVIDLATGK--VVATIKVGGNPRGI 83 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-ST---TEEEEEE-TT-SSEEEEEET-T-----SEEEEEETTSSS--EEEEEE-SSEEEEE
T ss_pred CCEEEEEECCCCeEEEEEcCCC---CceeEEEecCCCCEEEEEcC-C-----CeEEEEECCccc--EEEEEecCCCcceE
Confidence 36788889888663 3444332 22444333 457898853 2 468999999987 44555555555555
Q ss_pred EEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEE-cC--CC----CCCCcceEEEEECCEEEEEecCCCCCccceEEEE
Q psy17309 599 TTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTL-IE--PM----RHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKY 670 (824)
Q Consensus 599 ~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~--~~----p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y 670 (824)
+.. +|+..+.+.+. .+.+..+|.++.+=.. ++ .+ +.+|...-.+...+..|++--.+ ...++..
T Consensus 84 ~~s~DG~~~~v~n~~----~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd----~~~I~vV 155 (369)
T PF02239_consen 84 AVSPDGKYVYVANYE----PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD----TGEIWVV 155 (369)
T ss_dssp EE--TTTEEEEEEEE----TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT----TTEEEEE
T ss_pred EEcCCCCEEEEEecC----CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc----CCeEEEE
Confidence 544 55544444432 3578889987764322 21 12 22333222223355556664322 3577888
Q ss_pred eCCCCCEEECCCCCCCCcceEEEEE-CCEEEEEccCCCCceeeEEEEEECCCCcE
Q psy17309 671 NPVTKTWSQVPDMYNPRSNFAIEVI-DDMIFAIGGFNGVTTIYHVECYDEKTDEW 724 (824)
Q Consensus 671 d~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 724 (824)
|.....=.....+...+.-|....- +++.|+++-. ..+.+-+.|.+++.=
T Consensus 156 dy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~----~sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 156 DYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN----GSNKIAVIDTKTGKL 206 (369)
T ss_dssp ETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG----GGTEEEEEETTTTEE
T ss_pred EeccccccceeeecccccccccccCcccceeeeccc----ccceeEEEeeccceE
Confidence 8655421122223344555554443 4454444322 223677888777644
No 181
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=65.16 E-value=3.9 Score=35.55 Aligned_cols=34 Identities=15% Similarity=0.439 Sum_probs=28.3
Q ss_pred cCHhhHHHHHHHHhhcChHhHHHHHHHHHhhcCC
Q psy17309 272 ITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTT 305 (824)
Q Consensus 272 l~~~~v~~ll~~a~~~~i~~l~~~c~~~l~~~l~ 305 (824)
++.+...++..+|++|.++.|.++||+.+...+-
T Consensus 90 vDqemL~eI~laaNYL~ikpLLd~gCKivaemir 123 (158)
T COG5201 90 VDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR 123 (158)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence 3456789999999999999999999988766543
No 182
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=64.78 E-value=1.4e+02 Score=29.21 Aligned_cols=160 Identities=11% Similarity=0.053 Sum_probs=92.8
Q ss_pred EEEEECCEEEEEeecCCCcccceEEEEECCCCceEEeccCC-CCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCC
Q psy17309 503 GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN-FKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTEN 581 (824)
Q Consensus 503 ~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 581 (824)
+....+++++..-|.-+. +.+..+|..+++-..-.+++ ..-.+-+.+.+++.+|..-=.. .-.+.||+.+
T Consensus 50 GL~~~~g~i~esTG~yg~---S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~e-----gvaf~~d~~t- 120 (262)
T COG3823 50 GLEYLDGHILESTGLYGF---SKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKE-----GVAFKYDADT- 120 (262)
T ss_pred ceeeeCCEEEEecccccc---ceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEecc-----ceeEEEChHH-
Confidence 556668888888886543 67899999977632222333 2344556888899999984221 2356777654
Q ss_pred cEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEE---Ec--CCCCCCCcceEEEEECCEEEEEe
Q psy17309 582 QWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWT---LI--EPMRHRRSGVSCIAYHECIYVIG 656 (824)
Q Consensus 582 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~---~~--~~~p~~r~~~~~~~~~~~iyv~G 656 (824)
.+.+...+.+-.+-+.+.-+..|.+.-|. ..+..-||++-.=. .+ ...|.. .---.-.++|.+|.==
T Consensus 121 -~~~lg~~~y~GeGWgLt~d~~~LimsdGs------atL~frdP~tfa~~~~v~VT~~g~pv~-~LNELE~VdG~lyANV 192 (262)
T COG3823 121 -LEELGRFSYEGEGWGLTSDDKNLIMSDGS------ATLQFRDPKTFAELDTVQVTDDGVPVS-KLNELEWVDGELYANV 192 (262)
T ss_pred -hhhhcccccCCcceeeecCCcceEeeCCc------eEEEecCHHHhhhcceEEEEECCeecc-cccceeeeccEEEEee
Confidence 34566666666677777777776665552 34555566543210 00 011111 0011223345555321
Q ss_pred cCCCCCccceEEEEeCCCCC---EEECCCCC
Q psy17309 657 GFNGMSRMCNGEKYNPVTKT---WSQVPDMY 684 (824)
Q Consensus 657 G~~~~~~~~~v~~yd~~~~~---W~~~~~~p 684 (824)
-..+.+.+.||++.+ |..+++++
T Consensus 193 -----w~t~~I~rI~p~sGrV~~widlS~L~ 218 (262)
T COG3823 193 -----WQTTRIARIDPDSGRVVAWIDLSGLL 218 (262)
T ss_pred -----eeecceEEEcCCCCcEEEEEEccCCc
Confidence 124678899998874 88887764
No 183
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=64.74 E-value=1.6e+02 Score=29.60 Aligned_cols=201 Identities=13% Similarity=0.205 Sum_probs=92.5
Q ss_pred EEECCEEEE--Eeec-CCCcccceEEEEECCC-CceEEe---ccC----CC-CcceEEEEEECCEEEEEeccc--CCCCC
Q psy17309 505 AVIGYNIYV--IGGF-DGNEYYNSCRCFNAVT-KVWKEI---APM----NF-KRCYVSTAVHQDVIYAMGGYN--GQRRQ 570 (824)
Q Consensus 505 ~~~~~~lyv--~GG~-~~~~~~~~~~~yd~~~-~~W~~~---~~~----~~-~r~~~~~~~~~~~iyv~GG~~--~~~~~ 570 (824)
.+.++.||. .+|. .+-+.+.-.|+-.... ++|+.- .++ |. .-..+++.++++++|++=-.. ....+
T Consensus 22 FVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~km 101 (367)
T PF12217_consen 22 FVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVASNKM 101 (367)
T ss_dssp EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETTT--E
T ss_pred eeecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhhhhhh
Confidence 344565553 2332 2333334445544443 568642 222 22 122345788999999875322 23334
Q ss_pred CeEEEEe---CCCCcEEe--ecCCCc-------ccCceEEEEECCEEEEEcccCCCCcCCceE-EEeCC------CCeEE
Q psy17309 571 NSVEKYN---YTENQWSL--IAPMNV-------ERSDASATTLQGKIYITGGFNGHNCLNSCE-VYDPE------CNQWT 631 (824)
Q Consensus 571 ~~~~~yd---~~t~~W~~--~~~~p~-------~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~-~yd~~------~~~W~ 631 (824)
...+.|| ...+.|+. ++..|. .-.-|+.|.+++.-|.+|=.++...-..+- .|-+. .-.=+
T Consensus 102 ~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr 181 (367)
T PF12217_consen 102 VRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRR 181 (367)
T ss_dssp EEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEE
T ss_pred hhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeee
Confidence 4455565 35678864 444444 345677788888888887655542222221 12111 11111
Q ss_pred EcC-CCCCCCcceEEEEECCEEEEEec-CCCCCccceEEEEeCCCCCEEECCCC-CCCCcceEEEEECCEEEEEccC
Q psy17309 632 LIE-PMRHRRSGVSCIAYHECIYVIGG-FNGMSRMCNGEKYNPVTKTWSQVPDM-YNPRSNFAIEVIDDMIFAIGGF 705 (824)
Q Consensus 632 ~~~-~~p~~r~~~~~~~~~~~iyv~GG-~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~~~~~~i~v~GG~ 705 (824)
.++ ......+..+.-.++|.||+.-- ......-..+.+-+.....|+.+.-. .........+.+++.||+||-.
T Consensus 182 ~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 182 IIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp E--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE-
T ss_pred echhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEecc
Confidence 222 11222233444567999999864 44444556778888888899987421 2223344567789999999964
No 184
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=63.99 E-value=4.1 Score=35.12 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=31.2
Q ss_pred ceeEEeeecccchhhhheeecccce-------------------ecCHhhHHHHHHHHhhcCh
Q psy17309 246 NSVEKYNYTENQDKIEEKKLFERKL-------------------HITEDNVASLLLATDFFCM 289 (824)
Q Consensus 246 ~~i~l~~~~~~~~~~ll~~~Yt~~l-------------------~l~~~~v~~ll~~a~~~~i 289 (824)
..|.+++++..+++.+++|++--.- .+..+.+.+|+.||++|+|
T Consensus 42 ~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 42 NPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred CCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 6899999999999999999843211 1444566667777766654
No 185
>KOG0286|consensus
Probab=63.03 E-value=1.9e+02 Score=29.77 Aligned_cols=178 Identities=13% Similarity=0.221 Sum_probs=89.9
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceE---Eec-cCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCC
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWK---EIA-PMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTEN 581 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~---~~~-~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~ 581 (824)
.+....-||.+ +.+-+|+..+..=. ++. .++....+.+.+.+ +++|.--.|- ...-.+|+++.
T Consensus 108 Sg~~VAcGGLd-----N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD------~TCalWDie~g 176 (343)
T KOG0286|consen 108 SGNFVACGGLD-----NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD------MTCALWDIETG 176 (343)
T ss_pred CCCeEEecCcC-----ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCC------ceEEEEEcccc
Confidence 67777888875 45677777754222 222 23333444455443 4455544441 34566787776
Q ss_pred cEEeecCCCcccCceEEE-------EECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEE
Q psy17309 582 QWSLIAPMNVERSDASAT-------TLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECI 652 (824)
Q Consensus 582 ~W~~~~~~p~~r~~~~~~-------~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 652 (824)
+=... + .+|+.= ..+++.||.||.+. ....+|.....- +..++..-....++.+ +|.-
T Consensus 177 ~~~~~--f----~GH~gDV~slsl~p~~~ntFvSg~cD~-----~aklWD~R~~~c--~qtF~ghesDINsv~ffP~G~a 243 (343)
T KOG0286|consen 177 QQTQV--F----HGHTGDVMSLSLSPSDGNTFVSGGCDK-----SAKLWDVRSGQC--VQTFEGHESDINSVRFFPSGDA 243 (343)
T ss_pred eEEEE--e----cCCcccEEEEecCCCCCCeEEeccccc-----ceeeeeccCcce--eEeecccccccceEEEccCCCe
Confidence 53321 1 122211 11678999999874 344566554421 1222222222233333 5566
Q ss_pred EEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEE--EEECCEEEEEccCCCCceeeEEEEEEC
Q psy17309 653 YVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAI--EVIDDMIFAIGGFNGVTTIYHVECYDE 719 (824)
Q Consensus 653 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG~~~~~~~~~v~~yd~ 719 (824)
++.|..+ ..+-.||+.+++=-.+=.-+..-..... ....|+|++.|..+. .+.++|.
T Consensus 244 fatGSDD-----~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~-----~c~vWDt 302 (343)
T KOG0286|consen 244 FATGSDD-----ATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDF-----TCNVWDT 302 (343)
T ss_pred eeecCCC-----ceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCC-----ceeEeec
Confidence 6666543 3456788887753333111111222222 334799999986543 3555554
No 186
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=62.46 E-value=2.3e+02 Score=30.55 Aligned_cols=119 Identities=12% Similarity=-0.025 Sum_probs=67.5
Q ss_pred CCCEEEEEccCCCCCCCceEEEEECCCCcEEE-cccCCCCCCCceeEEEEECCEEEEEeecC----CCcccceEEEEECC
Q psy17309 458 PHEILFAIGGWSGGSPTDFVETYDTRADRWVK-IDQVDPMGPRAYHGTAVIGYNIYVIGGFD----GNEYYNSCRCFNAV 532 (824)
Q Consensus 458 ~~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~r~~~~~~~~~~~lyv~GG~~----~~~~~~~~~~yd~~ 532 (824)
....+|+.-....... +.+..+|..+.+-.. ++... .|| +.+..-+..+|+.-.+- -+...+.+..||+.
T Consensus 11 ~~~~v~V~d~~~~~~~-~~v~ViD~~~~~v~g~i~~G~--~P~--~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 11 DARRVYVLDPGHFAAT-TQVYTIDGEAGRVLGMTDGGF--LPN--PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred CCCEEEEECCcccccC-ceEEEEECCCCEEEEEEEccC--CCc--eeECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 3345666654322222 789999998876543 22222 223 22333367899988731 23345789999999
Q ss_pred CCceE-EeccCCCCcce-------EEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 533 TKVWK-EIAPMNFKRCY-------VSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 533 ~~~W~-~~~~~~~~r~~-------~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
+.+-. +++..+.||.. +++..-+..+|+.- ....+.+-+.|..+++--.
T Consensus 86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n----~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ----FSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEec----CCCCCEEEEEECCCCcEEE
Confidence 98754 34433444422 22222234677752 2235789999999887644
No 187
>KOG0649|consensus
Probab=61.07 E-value=1.8e+02 Score=29.00 Aligned_cols=128 Identities=13% Similarity=0.122 Sum_probs=66.4
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
.|.|+..||- ..+++.|.++++.+..-.- ..-+-|+++.- ++.| +.|+.+ ..+.++|..|.+-..
T Consensus 126 enSi~~AgGD------~~~y~~dlE~G~i~r~~rG-HtDYvH~vv~R~~~~qi-lsG~ED-----GtvRvWd~kt~k~v~ 192 (325)
T KOG0649|consen 126 ENSILFAGGD------GVIYQVDLEDGRIQREYRG-HTDYVHSVVGRNANGQI-LSGAED-----GTVRVWDTKTQKHVS 192 (325)
T ss_pred CCcEEEecCC------eEEEEEEecCCEEEEEEcC-CcceeeeeeecccCcce-eecCCC-----ccEEEEeccccceeE
Confidence 5778888872 4588999999987754321 12344555553 2333 345544 346778888877544
Q ss_pred e-cC-----CCcccCce--EEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEec
Q psy17309 586 I-AP-----MNVERSDA--SATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGG 657 (824)
Q Consensus 586 ~-~~-----~p~~r~~~--~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 657 (824)
+ .+ +..|..+- .+...+..-.|.||- ..+-.++....+-+.+-|+|. ..+-+..+++. .++||
T Consensus 193 ~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG------p~lslwhLrsse~t~vfpipa--~v~~v~F~~d~-vl~~G 263 (325)
T KOG0649|consen 193 MIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG------PKLSLWHLRSSESTCVFPIPA--RVHLVDFVDDC-VLIGG 263 (325)
T ss_pred EeccccChhhcCcccCceeEEEeccCceEEecCC------CceeEEeccCCCceEEEeccc--ceeEeeeecce-EEEec
Confidence 3 22 22222332 344445555666663 233445544444343333333 33333344444 45555
No 188
>PTZ00420 coronin; Provisional
Probab=60.66 E-value=3.2e+02 Score=31.66 Aligned_cols=146 Identities=13% Similarity=0.168 Sum_probs=70.5
Q ss_pred CEEEEEeecCCCcccceEEEEECCCCce-EEeccCCCCcceEEEEE-ECCEEEEEecccCCCCCCeEEEEeCCCCcEEee
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFNAVTKVW-KEIAPMNFKRCYVSTAV-HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI 586 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 586 (824)
..+++.||.+ ..+..||..+.+= ..+. . +..-.+++. .+|.+++.|+.+ ..+.+||+.+.+= +
T Consensus 138 ~~iLaSgS~D-----gtIrIWDl~tg~~~~~i~-~--~~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~~--i 202 (568)
T PTZ00420 138 YYIMCSSGFD-----SFVNIWDIENEKRAFQIN-M--PKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQEI--A 202 (568)
T ss_pred CeEEEEEeCC-----CeEEEEECCCCcEEEEEe-c--CCcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCcE--E
Confidence 3455666654 4578899887651 1111 1 111223332 367777777633 5688999987642 2
Q ss_pred cCCCc---ccCceEEEE----ECCEEEEEcccCCCCcCCceEEEeCCC-CeEEEcCCCCCCCcceEEEEE---CCEEEEE
Q psy17309 587 APMNV---ERSDASATT----LQGKIYITGGFNGHNCLNSCEVYDPEC-NQWTLIEPMRHRRSGVSCIAY---HECIYVI 655 (824)
Q Consensus 587 ~~~p~---~r~~~~~~~----~~~~lyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~p~~r~~~~~~~~---~~~iyv~ 655 (824)
..+.. .+....... -++..++.+|.++. ....+..||..+ ..-...-.+... .+.-+... .+.+|+.
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~-~~R~VkLWDlr~~~~pl~~~~ld~~-~~~L~p~~D~~tg~l~ls 280 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN-NMREMKLWDLKNTTSALVTMSIDNA-SAPLIPHYDESTGLIYLI 280 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC-CccEEEEEECCCCCCceEEEEecCC-ccceEEeeeCCCCCEEEE
Confidence 22211 111111111 24455666665542 224688899774 221111111110 01001111 4778888
Q ss_pred ecCCCCCccceEEEEeCCCCC
Q psy17309 656 GGFNGMSRMCNGEKYNPVTKT 676 (824)
Q Consensus 656 GG~~~~~~~~~v~~yd~~~~~ 676 (824)
|..+ ..+..|+.....
T Consensus 281 GkGD-----~tIr~~e~~~~~ 296 (568)
T PTZ00420 281 GKGD-----GNCRYYQHSLGS 296 (568)
T ss_pred EECC-----CeEEEEEccCCc
Confidence 8543 467777776554
No 189
>PRK10115 protease 2; Provisional
Probab=60.09 E-value=3.6e+02 Score=32.15 Aligned_cols=209 Identities=10% Similarity=-0.014 Sum_probs=108.0
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccC-CCCCCeEEEEeCCCCcE--
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNG-QRRQNSVEKYNYTENQW-- 583 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~-~~~~~~~~~yd~~t~~W-- 583 (824)
+++.++++--.++....++++.|+.++.... ..++..+ ..++.. ++.-+++..... .....+++++++.|..-
T Consensus 137 dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~-~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d 213 (686)
T PRK10115 137 DNTIMALAEDFLSRRQYGIRFRNLETGNWYP-ELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQD 213 (686)
T ss_pred CCCEEEEEecCCCcEEEEEEEEECCCCCCCC-ccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHC
Confidence 6677777755555556778999998874211 1111112 334443 444333333322 12447899999998832
Q ss_pred EeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeC--CCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCC
Q psy17309 584 SLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDP--ECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNG 660 (824)
Q Consensus 584 ~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 660 (824)
..+-.-+........... +++..++..... ..+.++.|+. .+..|..+-+.+... .......++.+|+.--.+
T Consensus 214 ~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ly~~tn~~- 289 (686)
T PRK10115 214 ELVYEEKDDTFYVSLHKTTSKHYVVIHLASA--TTSEVLLLDAELADAEPFVFLPRRKDH-EYSLDHYQHRFYLRSNRH- 289 (686)
T ss_pred eEEEeeCCCCEEEEEEEcCCCCEEEEEEECC--ccccEEEEECcCCCCCceEEEECCCCC-EEEEEeCCCEEEEEEcCC-
Confidence 222111112222233333 444334444332 2356777773 234443332222222 223334468888886432
Q ss_pred CCccceEEEEeCC-CCCEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 661 MSRMCNGEKYNPV-TKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 661 ~~~~~~v~~yd~~-~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
.....+...++. ..+|+.+-+....+.--++...++.|++..-.++ ...++++|..++....+
T Consensus 290 -~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g---~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 290 -GKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRG---LTSLRQINRKTREVIGI 353 (686)
T ss_pred -CCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCC---EEEEEEEcCCCCceEEe
Confidence 223456777776 5789887544222333345556888888754333 33578888766555544
No 190
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=59.82 E-value=14 Score=31.80 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=28.6
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy17309 305 TPRNCFGILLFSRDHFCKKLEEWTRKYILRN 335 (824)
Q Consensus 305 ~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~ 335 (824)
..+++..++.+|+.++++.|.+.|.+++.++
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 3889999999999999999999999999876
No 191
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=59.77 E-value=2.6e+02 Score=30.31 Aligned_cols=102 Identities=10% Similarity=0.121 Sum_probs=59.6
Q ss_pred ceEEEECCCCcEEeeccCCCCCCcCeEEEEEECCEEEEEccCCCCcccceEEEEEccCCceeEecc-----cCCC--cce
Q psy17309 62 FVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAP-----MNFK--RCY 134 (824)
Q Consensus 62 ~~~~~d~~~~~W~~~~~~~~p~~R~~h~~~~~~~~~yv~GG~~~~~~~~~~~~~~~~~~~W~~~~~-----~~~~--R~~ 134 (824)
.+..+. .+.|+.++.+. -..-.++..+|++|+..- ..+++.++.. .+=.++++ +... +..
T Consensus 183 ~l~~w~--~~~Wt~l~~~~----~~~~DIi~~kGkfYAvD~------~G~l~~i~~~-l~i~~v~~~i~~~~~~g~~~~~ 249 (373)
T PLN03215 183 KINYWD--GNVLKALKQMG----YHFSDIIVHKGQTYALDS------IGIVYWINSD-LEFSRFGTSLDENITDGCWTGD 249 (373)
T ss_pred cEeeec--CCeeeEccCCC----ceeeEEEEECCEEEEEcC------CCeEEEEecC-CceeeecceecccccCCcccCc
Confidence 344454 48999997532 335667788999999822 2456666632 11122222 1111 223
Q ss_pred eEEEEECCEEEEEcCcCCCC------------CCC--cEEEEECCCCeEEEecccc
Q psy17309 135 VSTAVHQDVIYAMGGYNGQR------------RQN--SVEKYNYTENQWSLIAPMN 176 (824)
Q Consensus 135 ~~~~~~~~~lyv~GG~~~~~------------~~~--~~~~yd~~~~~W~~~~~~~ 176 (824)
...+...|.|+++....... ... .|++.|.+..+|..+..++
T Consensus 250 ~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 250 RRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred eeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 34666778899998853211 112 4456688888999998874
No 192
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=59.23 E-value=2.4e+02 Score=29.76 Aligned_cols=205 Identities=11% Similarity=0.062 Sum_probs=99.8
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCc-eEEeccC----CCCcc
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKV-WKEIAPM----NFKRC 547 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~----~~~r~ 547 (824)
..++.||+.+.+-.....+... .+...+ ++.|++.. ..++.+++.+.. |+.+... +..|.
T Consensus 47 ~~i~r~~~~~g~~~~~~~p~~~-----~~~~~~d~~g~Lv~~~--------~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ 113 (307)
T COG3386 47 GRIHRLDPETGKKRVFPSPGGF-----SSGALIDAGGRLIACE--------HGVRLLDPDTGGKITLLAEPEDGLPLNRP 113 (307)
T ss_pred CeEEEecCCcCceEEEECCCCc-----ccceeecCCCeEEEEc--------cccEEEeccCCceeEEeccccCCCCcCCC
Confidence 4577787776544433222211 222333 33343332 346677765443 3554432 33455
Q ss_pred eEEEEEECCEEEEEecc------cCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECC-EEEEEcccCCCCcCCce
Q psy17309 548 YVSTAVHQDVIYAMGGY------NGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQG-KIYITGGFNGHNCLNSC 620 (824)
Q Consensus 548 ~~~~~~~~~~iyv~GG~------~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~v 620 (824)
+=..+.-+|.+|+---. ........+|++||. ....++..-.....+--+..-++ .+|+.= ...+.+
T Consensus 114 ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpDg~tly~aD-----T~~~~i 187 (307)
T COG3386 114 NDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPDGKTLYVAD-----TPANRI 187 (307)
T ss_pred CceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEecCceEECCCCCEEEEEe-----CCCCeE
Confidence 55566667787775322 233445689999994 55544432212222222222244 677752 334677
Q ss_pred EEEeCCC------C--eEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEE
Q psy17309 621 EVYDPEC------N--QWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAI 692 (824)
Q Consensus 621 ~~yd~~~------~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~ 692 (824)
++|+... + .+... .....+-.-.++--+|.||+.....+ ..|.+|+|+... ...-.+|. ...++
T Consensus 188 ~r~~~d~~~g~~~~~~~~~~~-~~~~G~PDG~~vDadG~lw~~a~~~g----~~v~~~~pdG~l-~~~i~lP~--~~~t~ 259 (307)
T COG3386 188 HRYDLDPATGPIGGRRGFVDF-DEEPGLPDGMAVDADGNLWVAAVWGG----GRVVRFNPDGKL-LGEIKLPV--KRPTN 259 (307)
T ss_pred EEEecCcccCccCCcceEEEc-cCCCCCCCceEEeCCCCEEEecccCC----ceEEEECCCCcE-EEEEECCC--CCCcc
Confidence 7776653 1 11111 11222222233444788997554322 478999998332 22223443 22333
Q ss_pred EEE----CCEEEEEccCC
Q psy17309 693 EVI----DDMIFAIGGFN 706 (824)
Q Consensus 693 ~~~----~~~i~v~GG~~ 706 (824)
+++ .+.|||..-..
T Consensus 260 ~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 260 PAFGGPDLNTLYITSARS 277 (307)
T ss_pred ceEeCCCcCEEEEEecCC
Confidence 333 25677775443
No 193
>KOG1332|consensus
Probab=58.69 E-value=73 Score=31.73 Aligned_cols=102 Identities=13% Similarity=0.259 Sum_probs=58.3
Q ss_pred EEEEEeecCCCcccceEEEEECCCCceEEe----------------ccCCCCcceEEEEEECCEEEEEecccCCCCCCeE
Q psy17309 510 NIYVIGGFDGNEYYNSCRCFNAVTKVWKEI----------------APMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSV 573 (824)
Q Consensus 510 ~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~----------------~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 573 (824)
+-++.||.+. +-.+|.|| +.+|..- |....++...+.+.-++.+++.
T Consensus 176 krlvSgGcDn---~VkiW~~~--~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw------------ 238 (299)
T KOG1332|consen 176 KRLVSGGCDN---LVKIWKFD--SDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW------------ 238 (299)
T ss_pred ceeeccCCcc---ceeeeecC--CcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE------------
Confidence 4577888653 23455554 4466432 2333456666666667766664
Q ss_pred EEEeCCCCcEEe--ecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCC-CeEEEcCC
Q psy17309 574 EKYNYTENQWSL--IAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPEC-NQWTLIEP 635 (824)
Q Consensus 574 ~~yd~~t~~W~~--~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~ 635 (824)
.-+.+.+.|+. +.+.|.+....+-...++.|-|.||. +.+.++-... ++|..++.
T Consensus 239 -t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~Gd------Nkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 239 -TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGD------NKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred -EecCccCcccccccccCCcceEEEEEeccccEEEEecCC------cEEEEEEeCCCCcEEEccc
Confidence 23445677864 34566665554444445656666663 4566776655 48988763
No 194
>KOG2321|consensus
Probab=58.48 E-value=64 Score=36.08 Aligned_cols=118 Identities=12% Similarity=0.123 Sum_probs=63.9
Q ss_pred CCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEE
Q psy17309 498 PRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEK 575 (824)
Q Consensus 498 ~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 575 (824)
|+.+..++.. ...||+.|- .+++|++|+..+.|-.--....+-..+....--+.|+++||.+ ..|+.
T Consensus 133 P~~GRDm~y~~~scDly~~gs------g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~-----g~VEf 201 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTED-----GVVEF 201 (703)
T ss_pred CcCCccccccCCCccEEEeec------CcceEEEEccccccccccccccccceeeeecCccceEEecccC-----ceEEE
Confidence 4444444443 456787763 3789999999999853222211222222222235678888854 56899
Q ss_pred EeCCCCcEE-e------ecCCCcccCc--eEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeE
Q psy17309 576 YNYTENQWS-L------IAPMNVERSD--ASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQW 630 (824)
Q Consensus 576 yd~~t~~W~-~------~~~~p~~r~~--~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 630 (824)
+||.+.+-. . +...|..-.. .++..+ ++-|-+.=|. ....++.||+.+.+=
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt----s~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT----STGSVLIYDLRASKP 262 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeec----cCCcEEEEEcccCCc
Confidence 999876531 1 2233333222 233333 4344443332 235688999877653
No 195
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=57.35 E-value=70 Score=33.87 Aligned_cols=234 Identities=14% Similarity=0.113 Sum_probs=105.4
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeec----CCCcccceEEEEECCCCceEEeccCCC-Ccce
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGF----DGNEYYNSCRCFNAVTKVWKEIAPMNF-KRCY 548 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~----~~~~~~~~~~~yd~~~~~W~~~~~~~~-~r~~ 548 (824)
..++.+|..+++..=. .+.....+.+..- +..+|+..=+ .-+...+-+..||..|-+-..--.+|. +|..
T Consensus 17 ~rv~viD~d~~k~lGm----i~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGM----IDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTTEEEEE----EEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred ceEEEEECCCCcEEEE----eecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence 3577788777764321 1112222222111 5667776643 123446678899999986442222332 2432
Q ss_pred -------EEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCC-------CcccCceEEEEECCEEEEEc-ccCC
Q psy17309 549 -------VSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPM-------NVERSDASATTLQGKIYITG-GFNG 613 (824)
Q Consensus 549 -------~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~-------p~~r~~~~~~~~~~~lyv~G-G~~~ 613 (824)
.++..-+..+||. +-.+..+|-+.|...++.-..-+. |.+-.++++.--+|.+..+. +.++
T Consensus 93 ~~~~~~~~~ls~dgk~~~V~----N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 93 VVPYKNMFALSADGKFLYVQ----NFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp BS--GGGEEE-TTSSEEEEE----EESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTS
T ss_pred ecccccceEEccCCcEEEEE----ccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCC
Confidence 1122223456665 233567899999999886433222 22222333222244443332 2222
Q ss_pred CCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCC-----CCCEEECCCCCCCCc
Q psy17309 614 HNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPV-----TKTWSQVPDMYNPRS 688 (824)
Q Consensus 614 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-----~~~W~~~~~~p~~r~ 688 (824)
......-..||++.+-.-.-+.............++|.+|-+.=..... .-...+.+. ...|+.-+ ..
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~--~~~~~~~~~t~~e~~~~WrPGG-----~Q 241 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA--KFGKPWSLLTDAEKADGWRPGG-----WQ 241 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE--EEEEEEESS-HHHHHTTEEE-S-----SS
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc--cccCcccccCccccccCcCCcc-----ee
Confidence 2222333567776653322111111112233356688888743211111 111222221 13565432 11
Q ss_pred ceEEEEECCEEEEEc--cCCC--CceeeEEEEEECCCCc
Q psy17309 689 NFAIEVIDDMIFAIG--GFNG--VTTIYHVECYDEKTDE 723 (824)
Q Consensus 689 ~~~~~~~~~~i~v~G--G~~~--~~~~~~v~~yd~~~~~ 723 (824)
..+.-.-.++|||.= |..+ ...-..||+||+++.+
T Consensus 242 ~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k 280 (342)
T PF06433_consen 242 LIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK 280 (342)
T ss_dssp -EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE
T ss_pred eeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe
Confidence 111112267888862 2222 1245689999999974
No 196
>KOG0266|consensus
Probab=56.53 E-value=3.3e+02 Score=30.57 Aligned_cols=172 Identities=12% Similarity=0.217 Sum_probs=91.4
Q ss_pred ceEEEEECCCC-c-eEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEE
Q psy17309 524 NSCRCFNAVTK-V-WKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATT 600 (824)
Q Consensus 524 ~~~~~yd~~~~-~-W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~ 600 (824)
..+.+||...+ . -+.+....... ++++.. .+.+++.|+.+ ..+.++|..+.+-.. .+........++.
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D-----~tvriWd~~~~~~~~--~l~~hs~~is~~~ 295 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDD-----GTVRIWDVRTGECVR--KLKGHSDGISGLA 295 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCC-----CcEEEEeccCCeEEE--eeeccCCceEEEE
Confidence 46788888433 2 23333333333 333333 45788888865 568888988854332 2222222333333
Q ss_pred E--CCEEEEEcccCCCCcCCceEEEeCCCCeEE---EcCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCC
Q psy17309 601 L--QGKIYITGGFNGHNCLNSCEVYDPECNQWT---LIEPMRHRRSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVT 674 (824)
Q Consensus 601 ~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~---~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~ 674 (824)
+ ++.+++.+.++ ..+.+||..++.-. .+.....+. ....+.. .+..|++.+..+ ..+-.+|+..
T Consensus 296 f~~d~~~l~s~s~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d----~~~~~w~l~~ 365 (456)
T KOG0266|consen 296 FSPDGNLLVSASYD-----GTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLD----RTLKLWDLRS 365 (456)
T ss_pred ECCCCCEEEEcCCC-----ccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCC----CeEEEEEccC
Confidence 3 67777777654 46889998887732 222222222 2233333 344455544321 3455666654
Q ss_pred C----CEEECCCCCCCCcceEEEEE-CCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 675 K----TWSQVPDMYNPRSNFAIEVI-DDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 675 ~----~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
. +|...... .+..+..+.. +++..+.|+.+. .+.+||+.+
T Consensus 366 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~sg~~d~-----~v~~~~~~s 410 (456)
T KOG0266|consen 366 GKSVGTYTGHSNL--VRCIFSPTLSTGGKLIYSGSEDG-----SVYVWDSSS 410 (456)
T ss_pred CcceeeecccCCc--ceeEecccccCCCCeEEEEeCCc-----eEEEEeCCc
Confidence 3 23333222 1333333323 677777777655 688899887
No 197
>KOG0278|consensus
Probab=55.95 E-value=1.4e+02 Score=29.97 Aligned_cols=121 Identities=19% Similarity=0.263 Sum_probs=62.7
Q ss_pred CceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEE-eecCCCcccceEEEEECCCCceEEeccCCCCcceEEEE
Q psy17309 474 TDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVI-GGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTA 552 (824)
Q Consensus 474 ~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~-GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~ 552 (824)
...+..+|.++.+-.+ ....+.+-...-+.. +++++.+ -| +.+-.+|+.+-.--+--.||..- .++
T Consensus 164 d~tVRLWD~rTgt~v~--sL~~~s~VtSlEvs~-dG~ilTia~g-------ssV~Fwdaksf~~lKs~k~P~nV---~SA 230 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQ--SLEFNSPVTSLEVSQ-DGRILTIAYG-------SSVKFWDAKSFGLLKSYKMPCNV---ESA 230 (334)
T ss_pred CCceEEEEeccCcEEE--EEecCCCCcceeecc-CCCEEEEecC-------ceeEEeccccccceeeccCcccc---ccc
Confidence 3467888888877654 222332222211111 4444443 23 45666676653322223444322 223
Q ss_pred EE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEE-E--CCEEEEEcccCCC
Q psy17309 553 VH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATT-L--QGKIYITGGFNGH 614 (824)
Q Consensus 553 ~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~-~--~~~lyv~GG~~~~ 614 (824)
.+ +..+||.||.+ -.+++||-.|+. .+........+..-|+ + +|.+|..|..++.
T Consensus 231 SL~P~k~~fVaGged-----~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 231 SLHPKKEFFVAGGED-----FKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred cccCCCceEEecCcc-----eEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCCce
Confidence 33 55899999953 357778877764 3322222222222222 2 8999999987763
No 198
>KOG0291|consensus
Probab=53.51 E-value=4.3e+02 Score=31.01 Aligned_cols=177 Identities=11% Similarity=0.093 Sum_probs=93.2
Q ss_pred CEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecC
Q psy17309 509 YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAP 588 (824)
Q Consensus 509 ~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~ 588 (824)
+.=..+|+. .+..+.+|+-.+++..--..-...|.......-+|.+.+.|+.+ ..|-+||..+.-.. ..
T Consensus 319 GDWiA~g~~----klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eD-----gKVKvWn~~SgfC~--vT 387 (893)
T KOG0291|consen 319 GDWIAFGCS----KLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAED-----GKVKVWNTQSGFCF--VT 387 (893)
T ss_pred CCEEEEcCC----ccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCC-----CcEEEEeccCceEE--EE
Confidence 555556652 24467777766555433222223343333334488999999865 45777776654332 12
Q ss_pred CCcccCceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCe-EEEcCCCCCCCcceEEEEEC--CEEEEEecCCCCCc
Q psy17309 589 MNVERSDASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQ-WTLIEPMRHRRSGVSCIAYH--ECIYVIGGFNGMSR 663 (824)
Q Consensus 589 ~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~ 663 (824)
....-++++++.+ .++..+.-..++ +|-.+|..... .+.. ..|. |..+++++++ |.|.+.|+.+
T Consensus 388 FteHts~Vt~v~f~~~g~~llssSLDG-----tVRAwDlkRYrNfRTf-t~P~-p~QfscvavD~sGelV~AG~~d---- 456 (893)
T KOG0291|consen 388 FTEHTSGVTAVQFTARGNVLLSSSLDG-----TVRAWDLKRYRNFRTF-TSPE-PIQFSCVAVDPSGELVCAGAQD---- 456 (893)
T ss_pred eccCCCceEEEEEEecCCEEEEeecCC-----eEEeeeecccceeeee-cCCC-ceeeeEEEEcCCCCEEEeeccc----
Confidence 2333444554433 555555544443 45566665432 2222 2233 4556677776 8999999865
Q ss_pred cceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCC
Q psy17309 664 MCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNG 707 (824)
Q Consensus 664 ~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 707 (824)
.-++++++.++++--.+-.....-...-+....+.+++.|-++.
T Consensus 457 ~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 457 SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK 500 (893)
T ss_pred eEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc
Confidence 34677888888775554221111111111223455666666654
No 199
>KOG2048|consensus
Probab=53.15 E-value=4.1e+02 Score=30.64 Aligned_cols=112 Identities=11% Similarity=0.117 Sum_probs=64.9
Q ss_pred CCEEEEEcccCCCCcCCceEEEeCCC-CeEEEcCCCCCCCcceEEEEE---CCEEEEEecCCCCCccceEEEEeCCCCCE
Q psy17309 602 QGKIYITGGFNGHNCLNSCEVYDPEC-NQWTLIEPMRHRRSGVSCIAY---HECIYVIGGFNGMSRMCNGEKYNPVTKTW 677 (824)
Q Consensus 602 ~~~lyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 677 (824)
+|.+.++|-.. .-.+++..++. -+-+.+..+|..+...+...+ ++++++.. ....+++.++.++.+-
T Consensus 393 dg~~Ia~st~~----~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s-----~~~~~le~~el~~ps~ 463 (691)
T KOG2048|consen 393 DGNLIAISTVS----RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVS-----KNIFSLEEFELETPSF 463 (691)
T ss_pred CCCEEEEeecc----ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEe-----cccceeEEEEecCcch
Confidence 66667765432 13445544433 234555677777655554433 57777765 1235678888888777
Q ss_pred EECCCCCCCCcc---eEEE--EECCEEEEEccCCCCceeeEEEEEECCCCcEEecc
Q psy17309 678 SQVPDMYNPRSN---FAIE--VIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEAT 728 (824)
Q Consensus 678 ~~~~~~p~~r~~---~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (824)
.++.+....-.. ..++ ..|+.|-++++. ..|++|+.++.+-+.+.
T Consensus 464 kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~------g~I~v~nl~~~~~~~l~ 513 (691)
T KOG2048|consen 464 KELKSIQSQAKCPSISRLVVSSDGNYIAAISTR------GQIFVYNLETLESHLLK 513 (691)
T ss_pred hhhhccccccCCCcceeEEEcCCCCEEEEEecc------ceEEEEEcccceeecch
Confidence 776433211111 1122 237778887743 26999999998777664
No 200
>KOG0286|consensus
Probab=52.12 E-value=2.9e+02 Score=28.51 Aligned_cols=178 Identities=16% Similarity=0.217 Sum_probs=85.8
Q ss_pred CCCEEEEEccCCCCCCCceEEEEECCCCcEE--EcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCC
Q psy17309 458 PHEILFAIGGWSGGSPTDFVETYDTRADRWV--KIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVT 533 (824)
Q Consensus 458 ~~~~l~~~GG~~~~~~~~~~~~yd~~~~~W~--~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~ 533 (824)
+.+..++.||.+ +.+-+|+..+..=. .--...++....+.+++.. ++.|.--.| -..+-.+|.++
T Consensus 107 PSg~~VAcGGLd-----N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SG------D~TCalWDie~ 175 (343)
T KOG0286|consen 107 PSGNFVACGGLD-----NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSG------DMTCALWDIET 175 (343)
T ss_pred CCCCeEEecCcC-----ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCC------CceEEEEEccc
Confidence 456778888864 33455665543111 0001123334445555554 444443333 24567788887
Q ss_pred CceEEeccCCCC-cceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE--CCEEEEEcc
Q psy17309 534 KVWKEIAPMNFK-RCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL--QGKIYITGG 610 (824)
Q Consensus 534 ~~W~~~~~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG 610 (824)
.+=...-.-... -...++.-.++..|+-||.+. ....+|.....-. ..++..-+...++.+ +|.-++.|.
T Consensus 176 g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~-----~aklWD~R~~~c~--qtF~ghesDINsv~ffP~G~afatGS 248 (343)
T KOG0286|consen 176 GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDK-----SAKLWDVRSGQCV--QTFEGHESDINSVRFFPSGDAFATGS 248 (343)
T ss_pred ceEEEEecCCcccEEEEecCCCCCCeEEeccccc-----ceeeeeccCccee--EeecccccccceEEEccCCCeeeecC
Confidence 653321110000 000111112678999999653 3445565554322 222222222223322 566666665
Q ss_pred cCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecC
Q psy17309 611 FNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGF 658 (824)
Q Consensus 611 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 658 (824)
-+ .+.-.||...++=..+-+-+....+...+.+ .|+|...|+.
T Consensus 249 DD-----~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~ 293 (343)
T KOG0286|consen 249 DD-----ATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYD 293 (343)
T ss_pred CC-----ceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeec
Confidence 43 3566788888764433332333344444444 6888888753
No 201
>KOG0266|consensus
Probab=51.39 E-value=4e+02 Score=29.95 Aligned_cols=142 Identities=9% Similarity=0.223 Sum_probs=76.1
Q ss_pred CCEEEEEecccCCCCCCeEEEEeCCCC-c-EEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEE
Q psy17309 555 QDVIYAMGGYNGQRRQNSVEKYNYTEN-Q-WSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWT 631 (824)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~t~-~-W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 631 (824)
+++ |+++|.. -..+.++|...+ . -+.+...+... ++++.. .+.+++.|+.+ .++..+|..+.+-.
T Consensus 214 d~~-~l~s~s~----D~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D-----~tvriWd~~~~~~~ 281 (456)
T KOG0266|consen 214 DGS-YLLSGSD----DKTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDD-----GTVRIWDVRTGECV 281 (456)
T ss_pred CCc-EEEEecC----CceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCC-----CcEEEEeccCCeEE
Confidence 455 5554432 246778888433 2 23344444444 333332 56889998876 47888999885433
Q ss_pred EcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCCCEE---ECCCCCCCCcceEEEEE--CCEEEEEcc
Q psy17309 632 LIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTKTWS---QVPDMYNPRSNFAIEVI--DDMIFAIGG 704 (824)
Q Consensus 632 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~---~~~~~p~~r~~~~~~~~--~~~i~v~GG 704 (824)
.. ++.......++.+ ++.+++.+..+ ..+.+||..+..-. .+.....+. ....+.. +++.++.+.
T Consensus 282 ~~--l~~hs~~is~~~f~~d~~~l~s~s~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 282 RK--LKGHSDGISGLAFSPDGNLLVSASYD-----GTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred Ee--eeccCCceEEEEECCCCCEEEEcCCC-----ccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEec
Confidence 22 2322333344444 67777777653 56889998877632 333222232 2223333 556666655
Q ss_pred CCCCceeeEEEEEECCC
Q psy17309 705 FNGVTTIYHVECYDEKT 721 (824)
Q Consensus 705 ~~~~~~~~~v~~yd~~~ 721 (824)
.+. .+-.||...
T Consensus 354 ~d~-----~~~~w~l~~ 365 (456)
T KOG0266|consen 354 LDR-----TLKLWDLRS 365 (456)
T ss_pred CCC-----eEEEEEccC
Confidence 443 345555554
No 202
>KOG0315|consensus
Probab=50.69 E-value=2.8e+02 Score=27.93 Aligned_cols=242 Identities=10% Similarity=-0.013 Sum_probs=0.0
Q ss_pred EEEEECCCCcEEEcccCCCCCCCceeEEEEE--CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE
Q psy17309 477 VETYDTRADRWVKIDQVDPMGPRAYHGTAVI--GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH 554 (824)
Q Consensus 477 ~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 554 (824)
|..||..++.=.+ ....-.++.+.+++-. +++-...||.++. +-++|...-.=.+.-..+.|-.....-..
T Consensus 63 vRlyD~~S~np~P--v~t~e~h~kNVtaVgF~~dgrWMyTgseDgt-----~kIWdlR~~~~qR~~~~~spVn~vvlhpn 135 (311)
T KOG0315|consen 63 VRLYDLNSNNPNP--VATFEGHTKNVTAVGFQCDGRWMYTGSEDGT-----VKIWDLRSLSCQRNYQHNSPVNTVVLHPN 135 (311)
T ss_pred eEEEEccCCCCCc--eeEEeccCCceEEEEEeecCeEEEecCCCce-----EEEEeccCcccchhccCCCCcceEEecCC
Q ss_pred CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEEc
Q psy17309 555 QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTLI 633 (824)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 633 (824)
+..+++.-- ...++++|..++......-....-.--++++. +|+..+.+-..+..+.-++.. +........+
T Consensus 136 QteLis~dq------sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~-~~~~s~l~P~ 208 (311)
T KOG0315|consen 136 QTELISGDQ------SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN-HQTASELEPV 208 (311)
T ss_pred cceEEeecC------CCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccC-CCccccceEh
Q ss_pred CCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCC-CEEECCCCCCCCcceEEEEECCEEEEEccCCCCce
Q psy17309 634 EPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTK-TWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTT 710 (824)
Q Consensus 634 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~ 710 (824)
..++..-....-+.+ +++..+..+.+ .++.+++.++. +-+..-.....-..-++...++.-+|.|+.+.
T Consensus 209 ~k~~ah~~~il~C~lSPd~k~lat~ssd-----ktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~--- 280 (311)
T KOG0315|consen 209 HKFQAHNGHILRCLLSPDVKYLATCSSD-----KTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDH--- 280 (311)
T ss_pred hheecccceEEEEEECCCCcEEEeecCC-----ceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCC---
Q ss_pred eeEEEEEECCCCcEEeccCCCCCccceeEEEEcC
Q psy17309 711 IYHVECYDEKTDEWYEATDMNIYRSALSACVIMG 744 (824)
Q Consensus 711 ~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 744 (824)
.+..+|+.++ +++..-+..+-...|+.+.+
T Consensus 281 --~~rlW~~~~~--k~v~qy~gh~K~~vc~~ln~ 310 (311)
T KOG0315|consen 281 --TARLWDLSAG--KEVRQYQGHHKAAVCVALND 310 (311)
T ss_pred --ceeecccccC--ceeeecCCcccccEEEEeeC
No 203
>KOG1898|consensus
Probab=49.95 E-value=5.8e+02 Score=31.40 Aligned_cols=161 Identities=10% Similarity=0.059 Sum_probs=87.8
Q ss_pred eEEEEeCCCCcEEeecCCCcccCceEEEE--E---CC-EEEEEcccCCCC------cCCceEEEeCC--CCeEEEcCCCC
Q psy17309 572 SVEKYNYTENQWSLIAPMNVERSDASATT--L---QG-KIYITGGFNGHN------CLNSCEVYDPE--CNQWTLIEPMR 637 (824)
Q Consensus 572 ~~~~yd~~t~~W~~~~~~p~~r~~~~~~~--~---~~-~lyv~GG~~~~~------~~~~v~~yd~~--~~~W~~~~~~p 637 (824)
.+.++|+.+..=...-+++..-..++++. + +. .+..+|+..... ....++.|+.- .++-+.+....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 45556665554333323333222222222 2 22 356666653321 12346666543 33455555545
Q ss_pred CCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCC-CCcceEEEEECCEEEEEccCCCCceeeEEEE
Q psy17309 638 HRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYN-PRSNFAIEVIDDMIFAIGGFNGVTTIYHVEC 716 (824)
Q Consensus 638 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~ 716 (824)
.+-.-++.+.+.|++++--| +.+.+||...++--....... |-.-........+|+| |-.. ..-...+
T Consensus 934 ~~~~v~Ai~~f~~~~LagvG-------~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~V-gD~q---eSV~~~~ 1002 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRVLAGVG-------RFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVV-GDIQ---ESVHFVR 1002 (1205)
T ss_pred CCccceEEeccCCEEEEecc-------cEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEE-eecc---ceEEEEE
Confidence 55556677888886666545 578899987765332222211 2222233344556555 3221 2235778
Q ss_pred EECCCCcEEeccCCCCCccceeEEEEc
Q psy17309 717 YDEKTDEWYEATDMNIYRSALSACVIM 743 (824)
Q Consensus 717 yd~~~~~W~~~~~~p~~r~~~~~~~~~ 743 (824)
|+++.|+-..+..-|.+|.-.++..++
T Consensus 1003 y~~~~n~l~~fadD~~pR~Vt~~~~lD 1029 (1205)
T KOG1898|consen 1003 YRREDNQLIVFADDPVPRHVTALELLD 1029 (1205)
T ss_pred EecCCCeEEEEeCCCccceeeEEEEec
Confidence 999999999998889998876666655
No 204
>KOG0289|consensus
Probab=49.88 E-value=3.8e+02 Score=29.24 Aligned_cols=138 Identities=12% Similarity=0.199 Sum_probs=74.5
Q ss_pred eeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEe
Q psy17309 501 YHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYN 577 (824)
Q Consensus 501 ~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd 577 (824)
.+++++. ++.|+..|-.+ ..+-+||..+.. .++..|..-.......+ +|+-.+.+- +. .+|.++|
T Consensus 350 ~ts~~fHpDgLifgtgt~d-----~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~a-dd----~~V~lwD 417 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD-----GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAA-DD----GSVKLWD 417 (506)
T ss_pred eEEeeEcCCceEEeccCCC-----ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEe-cC----CeEEEEE
Confidence 3444444 66777666433 457889988876 55555543222222222 444444433 21 3388888
Q ss_pred CCCCcEEeecCCCcccC-ceEEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEEC-CEEE
Q psy17309 578 YTENQWSLIAPMNVERS-DASATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYH-ECIY 653 (824)
Q Consensus 578 ~~t~~W~~~~~~p~~r~-~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~-~~iy 653 (824)
..... .....+.+-. ......+ .|+..+++|.+ -.|+.|+-.+..|+.+..++..-.-...+.++ ..-|
T Consensus 418 LRKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~-----l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~ 490 (506)
T KOG0289|consen 418 LRKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD-----LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQY 490 (506)
T ss_pred ehhhc--ccceeeccccccceeEEEcCCCCeEEeecce-----eEEEEEecccccceeeehhhhcccccceeeecccceE
Confidence 87654 2222222221 2223333 46777777643 35777888899999998766544344455554 3344
Q ss_pred EEec
Q psy17309 654 VIGG 657 (824)
Q Consensus 654 v~GG 657 (824)
++-|
T Consensus 491 l~s~ 494 (506)
T KOG0289|consen 491 LAST 494 (506)
T ss_pred Eeec
Confidence 4433
No 205
>KOG0274|consensus
Probab=48.84 E-value=4.7e+02 Score=30.08 Aligned_cols=169 Identities=9% Similarity=0.177 Sum_probs=87.9
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEE----
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASAT---- 599 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~---- 599 (824)
+.+.++|..++.-..+-.- .-.....+.+++.+.+.|..+ ..+-++|+.+.+. +..+. +|...
T Consensus 311 ~tVkVW~v~n~~~l~l~~~--h~~~V~~v~~~~~~lvsgs~d-----~~v~VW~~~~~~c--l~sl~----gH~~~V~sl 377 (537)
T KOG0274|consen 311 NTVKVWDVTNGACLNLLRG--HTGPVNCVQLDEPLLVSGSYD-----GTVKVWDPRTGKC--LKSLS----GHTGRVYSL 377 (537)
T ss_pred ceEEEEeccCcceEEEecc--ccccEEEEEecCCEEEEEecC-----ceEEEEEhhhcee--eeeec----CCcceEEEE
Confidence 5577777765543322110 111112344567777777654 3577788775543 22221 12222
Q ss_pred EECC-EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEE
Q psy17309 600 TLQG-KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWS 678 (824)
Q Consensus 600 ~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 678 (824)
.+++ ...+-|+.+ ..+..+|+.+.. .-+-.+...........+.+++++-+..+ ..+..+|.++.+=.
T Consensus 378 ~~~~~~~~~Sgs~D-----~~IkvWdl~~~~-~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD-----~~Ik~WD~~~~~~~ 446 (537)
T KOG0274|consen 378 IVDSENRLLSGSLD-----TTIKVWDLRTKR-KCIHTLQGHTSLVSSLLLRDNFLVSSSAD-----GTIKLWDAEEGECL 446 (537)
T ss_pred EecCcceEEeeeec-----cceEeecCCchh-hhhhhhcCCcccccccccccceeEecccc-----ccEEEeecccCcee
Confidence 3455 555556554 568888887764 22223333322223344567788877764 36777777766544
Q ss_pred ECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCC
Q psy17309 679 QVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 679 ~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
..-.-+ ......+..++...++..+.++ .+.+||..+.
T Consensus 447 ~~~~~~-~~~~v~~l~~~~~~il~s~~~~-----~~~l~dl~~~ 484 (537)
T KOG0274|consen 447 RTLEGR-HVGGVSALALGKEEILCSSDDG-----SVKLWDLRSG 484 (537)
T ss_pred eeeccC-CcccEEEeecCcceEEEEecCC-----eeEEEecccC
Confidence 442222 2233333444446777766654 4666776664
No 206
>KOG4378|consensus
Probab=48.79 E-value=4.2e+02 Score=29.44 Aligned_cols=88 Identities=13% Similarity=0.205 Sum_probs=51.0
Q ss_pred ceEEEeCCCC----eEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEE
Q psy17309 619 SCEVYDPECN----QWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEV 694 (824)
Q Consensus 619 ~v~~yd~~~~----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~ 694 (824)
.|..||.... .|.+.-.. |..+.+.+..+..|++.=|++ ..+..||.....-+..-.-..| .+.++
T Consensus 188 ~VtlwDv~g~sp~~~~~~~HsA--P~~gicfspsne~l~vsVG~D-----kki~~yD~~s~~s~~~l~y~~P---lstva 257 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHSA--PCRGICFSPSNEALLVSVGYD-----KKINIYDIRSQASTDRLTYSHP---LSTVA 257 (673)
T ss_pred eEEEEeccCCCcccchhhhccC--CcCcceecCCccceEEEeccc-----ceEEEeecccccccceeeecCC---cceee
Confidence 4556665433 25444333 345556667788999988875 6789999875543221100111 22333
Q ss_pred E--CCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 695 I--DDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 695 ~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
+ +|.++++|-..+ .+..||...
T Consensus 258 f~~~G~~L~aG~s~G-----~~i~YD~R~ 281 (673)
T KOG4378|consen 258 FSECGTYLCAGNSKG-----ELIAYDMRS 281 (673)
T ss_pred ecCCceEEEeecCCc-----eEEEEeccc
Confidence 3 566777765444 688899764
No 207
>KOG2715|consensus
Probab=48.67 E-value=13 Score=34.16 Aligned_cols=57 Identities=14% Similarity=-0.013 Sum_probs=48.4
Q ss_pred eEEeeecccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHHHHHHhhcC
Q psy17309 248 VEKYNYTENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLT 304 (824)
Q Consensus 248 i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c~~~l~~~l 304 (824)
-.+-|=++.-|..+|.|+-.|++.++.-.-..+|.-|++|.++.|+++..+-|....
T Consensus 66 AYlIDRDP~~FgpvLNylRhgklvl~~l~eeGvL~EAefyn~~~li~likd~i~dRd 122 (210)
T KOG2715|consen 66 AYLIDRDPFYFGPVLNYLRHGKLVLNKLSEEGVLEEAEFYNDPSLIQLIKDRIQDRD 122 (210)
T ss_pred ceEeccCcchHHHHHHHHhcchhhhhhhhhhccchhhhccCChHHHHHHHHHHHHHh
Confidence 455567889999999999999999998667889999999999999988887776643
No 208
>KOG3545|consensus
Probab=46.58 E-value=3.2e+02 Score=27.51 Aligned_cols=185 Identities=15% Similarity=0.174 Sum_probs=105.2
Q ss_pred EEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeC----CCCcEEeecCCCcccCceEEEEE
Q psy17309 526 CRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNY----TENQWSLIAPMNVERSDASATTL 601 (824)
Q Consensus 526 ~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~----~t~~W~~~~~~p~~r~~~~~~~~ 601 (824)
+.......+.|.+=|... ++++|++.+.. ...+.-|.. ....|...-.+|.+-.+.+-+++
T Consensus 12 ~~~~~~~~GsWmrDpl~~-----------~~r~~~~~~~~----~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VVy 76 (249)
T KOG3545|consen 12 VKTAGPRFGAWMRDPLPA-----------DDRIYVMNYFD----GLMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVVY 76 (249)
T ss_pred EEeeccccceeecCCCcc-----------cCceEEecccc----CceEEEeccHHHhhccCcceEEeCCCCccccceEEE
Confidence 344455557776533221 67888884432 234444543 34556666678999899899999
Q ss_pred CCEEEEEcccCCCCcCCceEEEeCCCCe---EEEcCCC------CCCCcc---eEEEEECCEEEEEecCCCCCccceEEE
Q psy17309 602 QGKIYITGGFNGHNCLNSCEVYDPECNQ---WTLIEPM------RHRRSG---VSCIAYHECIYVIGGFNGMSRMCNGEK 669 (824)
Q Consensus 602 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~---W~~~~~~------p~~r~~---~~~~~~~~~iyv~GG~~~~~~~~~v~~ 669 (824)
+|.+|.-.+ ....+-+||.++.. |..++.+ |-.-.+ .-.++...-|+++=-..+....-.+-.
T Consensus 77 nGs~yynk~-----~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~sk 151 (249)
T KOG3545|consen 77 NGSLYYNKA-----GTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSK 151 (249)
T ss_pred cceEEeecc-----CCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEeec
Confidence 999987653 24678899988743 5555422 111111 223444556666644333222223466
Q ss_pred EeCCC----CCEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEEeccCCCCCcc
Q psy17309 670 YNPVT----KTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRS 735 (824)
Q Consensus 670 yd~~~----~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 735 (824)
.|+.+ .+|..- + ..+....+..+-|-||++-........ --+.||..+++=.. .++|.+..
T Consensus 152 Ldp~tl~~e~tW~T~--~-~k~~~~~aF~iCGvLY~v~S~~~~~~~-i~yaydt~~~~~~~-~~ipf~N~ 216 (249)
T KOG3545|consen 152 LDPETLEVERTWNTT--L-PKRSAGNAFMICGVLYVVHSYNCTHTQ-ISYAYDTTTGTQER-IDLPFPNP 216 (249)
T ss_pred cCHHHhheeeeeccc--c-CCCCcCceEEEeeeeEEEeccccCCce-EEEEEEcCCCceec-ccccccch
Confidence 77743 456332 1 134445566777889998665543321 12789998877643 34555433
No 209
>PRK01742 tolB translocation protein TolB; Provisional
Probab=43.85 E-value=4.9e+02 Score=28.86 Aligned_cols=163 Identities=10% Similarity=0.036 Sum_probs=80.7
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEec-ccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEEC
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGG-YNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQ 602 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG-~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 602 (824)
..++.+|..+++-..+...+... ......-+++..+++. .++ ..++|.+|+.+.....+..-...- ......-+
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~-~~~~wSPDG~~La~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~-~~~~wSpD 302 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHN-GAPAFSPDGSRLAFASSKDG---VLNIYVMGANGGTPSQLTSGAGNN-TEPSWSPD 302 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCcc-CceeECCCCCEEEEEEecCC---cEEEEEEECCCCCeEeeccCCCCc-CCEEECCC
Confidence 56899999887766665443211 1112223554444433 222 246888999888776664422211 11122225
Q ss_pred CE-EEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCE-EEEEecCCCCCccceEEEEeCCCCCEEEC
Q psy17309 603 GK-IYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHEC-IYVIGGFNGMSRMCNGEKYNPVTKTWSQV 680 (824)
Q Consensus 603 ~~-lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (824)
|+ |+.....++ ...++.+|..+..-+.+.. ... .....-+|+ |++.++ ..+..+|+.+.++..+
T Consensus 303 G~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~~---~~~-~~~~SpDG~~ia~~~~-------~~i~~~Dl~~g~~~~l 368 (429)
T PRK01742 303 GQSILFTSDRSG---SPQVYRMSASGGGASLVGG---RGY-SAQISADGKTLVMING-------DNVVKQDLTSGSTEVL 368 (429)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCeEEecC---CCC-CccCCCCCCEEEEEcC-------CCEEEEECCCCCeEEe
Confidence 54 444332222 2466777766554333321 111 111222444 444433 3577899999888776
Q ss_pred CCCCCCCcceEEEEECCEEEEEccCCC
Q psy17309 681 PDMYNPRSNFAIEVIDDMIFAIGGFNG 707 (824)
Q Consensus 681 ~~~p~~r~~~~~~~~~~~i~v~GG~~~ 707 (824)
.... ........-+++.+++++.++
T Consensus 369 t~~~--~~~~~~~sPdG~~i~~~s~~g 393 (429)
T PRK01742 369 SSTF--LDESPSISPNGIMIIYSSTQG 393 (429)
T ss_pred cCCC--CCCCceECCCCCEEEEEEcCC
Confidence 4221 111122333777777765543
No 210
>KOG0291|consensus
Probab=42.45 E-value=6.4e+02 Score=29.75 Aligned_cols=159 Identities=12% Similarity=0.244 Sum_probs=90.6
Q ss_pred ceEEEEEEC--CEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEe
Q psy17309 547 CYVSTAVHQ--DVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYD 624 (824)
Q Consensus 547 ~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd 624 (824)
..-..++++ |.-..+|+.. +..+.+|+-.+++.-.-.+-...|....+..-+|.+.+.|+.++ .|-+||
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~k----lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg-----KVKvWn 378 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSK----LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG-----KVKVWN 378 (893)
T ss_pred ceeeEEEecccCCEEEEcCCc----cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC-----cEEEEe
Confidence 333445554 6777777632 55677777666654333232233333333344889999998764 567777
Q ss_pred CCCCeEEEcCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEeCCCC-CEEECCCCCCCCcceEEEEEC--CEE
Q psy17309 625 PECNQWTLIEPMRHRRSGVSCIAY--HECIYVIGGFNGMSRMCNGEKYNPVTK-TWSQVPDMYNPRSNFAIEVID--DMI 699 (824)
Q Consensus 625 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p~~r~~~~~~~~~--~~i 699 (824)
...+.-.. .+.....+++++.+ .++..+..-.++ +|-.+|+..- ..+... .|. |..+++++++ |.|
T Consensus 379 ~~SgfC~v--TFteHts~Vt~v~f~~~g~~llssSLDG-----tVRAwDlkRYrNfRTft-~P~-p~QfscvavD~sGel 449 (893)
T KOG0291|consen 379 TQSGFCFV--TFTEHTSGVTAVQFTARGNVLLSSSLDG-----TVRAWDLKRYRNFRTFT-SPE-PIQFSCVAVDPSGEL 449 (893)
T ss_pred ccCceEEE--EeccCCCceEEEEEEecCCEEEEeecCC-----eEEeeeecccceeeeec-CCC-ceeeeEEEEcCCCCE
Confidence 65543211 22334455555533 556555554443 4556665432 222222 233 4567777776 999
Q ss_pred EEEccCCCCceeeEEEEEECCCCcEEec
Q psy17309 700 FAIGGFNGVTTIYHVECYDEKTDEWYEA 727 (824)
Q Consensus 700 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (824)
++.|+.+. -+|++++.+|++-..+
T Consensus 450 V~AG~~d~----F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 450 VCAGAQDS----FEIFVWSVQTGQLLDI 473 (893)
T ss_pred EEeeccce----EEEEEEEeecCeeeeh
Confidence 99998754 2688888888876655
No 211
>KOG3881|consensus
Probab=40.74 E-value=4.9e+02 Score=27.97 Aligned_cols=147 Identities=14% Similarity=0.140 Sum_probs=76.5
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCC--ceEEecc------CCCCcceEEEEEECC---EEEEEecccCCCCCCeEEEE
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTK--VWKEIAP------MNFKRCYVSTAVHQD---VIYAMGGYNGQRRQNSVEKY 576 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~------~~~~r~~~~~~~~~~---~iyv~GG~~~~~~~~~~~~y 576 (824)
...|+.+||... .+.+.+||.... .|+.-.. |-.|-+...+..+.+ .-++.+- ....+-.|
T Consensus 160 ~p~Iva~GGke~---~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T-----~~hqvR~Y 231 (412)
T KOG3881|consen 160 DPYIVATGGKEN---INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATIT-----RYHQVRLY 231 (412)
T ss_pred CCceEecCchhc---ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEe-----cceeEEEe
Confidence 346888898643 355666666544 4764322 223444444555543 3333322 34678999
Q ss_pred eCCCCcEEeecC---CCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcce-EEEEEC-CE
Q psy17309 577 NYTENQWSLIAP---MNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGV-SCIAYH-EC 651 (824)
Q Consensus 577 d~~t~~W~~~~~---~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~-~~ 651 (824)
|+..++ +.+.. +-.+.+..+...-++.||+ | .....+-.||..+..--... +..-.... +...+. ..
T Consensus 232 Dt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~-g-----n~~g~l~~FD~r~~kl~g~~-~kg~tGsirsih~hp~~~ 303 (412)
T KOG3881|consen 232 DTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYT-G-----NTKGQLAKFDLRGGKLLGCG-LKGITGSIRSIHCHPTHP 303 (412)
T ss_pred cCcccC-cceeEeccccCcceeeeecCCCcEEEE-e-----cccchhheecccCceeeccc-cCCccCCcceEEEcCCCc
Confidence 998665 33333 3334333333333555554 3 23456788998877542221 11111111 122333 36
Q ss_pred EEEEecCCCCCccceEEEEeCCCC
Q psy17309 652 IYVIGGFNGMSRMCNGEKYNPVTK 675 (824)
Q Consensus 652 iyv~GG~~~~~~~~~v~~yd~~~~ 675 (824)
+...+|.+ .-+-+||.+++
T Consensus 304 ~las~GLD-----RyvRIhD~ktr 322 (412)
T KOG3881|consen 304 VLASCGLD-----RYVRIHDIKTR 322 (412)
T ss_pred eEEeeccc-----eeEEEeecccc
Confidence 77788854 34678888774
No 212
>KOG0643|consensus
Probab=40.71 E-value=4.1e+02 Score=27.07 Aligned_cols=171 Identities=9% Similarity=0.032 Sum_probs=76.5
Q ss_pred ceEEEEECCCCcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEE-----eccCCCCcceE
Q psy17309 475 DFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE-----IAPMNFKRCYV 549 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~-----~~~~~~~r~~~ 549 (824)
+++..+|..+++-...-..+.+..|..+. .++.+.++---........+..||.....=.. +-.+|.+-...
T Consensus 74 ~t~kLWDv~tGk~la~~k~~~~Vk~~~F~---~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski 150 (327)
T KOG0643|consen 74 QTAKLWDVETGKQLATWKTNSPVKRVDFS---FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI 150 (327)
T ss_pred ceeEEEEcCCCcEEEEeecCCeeEEEeec---cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccce
Confidence 45666777766543322223332333222 13444444332223345677888877432111 11123333444
Q ss_pred EEEEEC--CEEEEEecccCCCCCCeEEEEeCCCCcE-EeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeC
Q psy17309 550 STAVHQ--DVIYAMGGYNGQRRQNSVEKYNYTENQW-SLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDP 625 (824)
Q Consensus 550 ~~~~~~--~~iyv~GG~~~~~~~~~~~~yd~~t~~W-~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~ 625 (824)
..+..+ +...+.|+.+ .++-.||..++.= ...... ..+.--.+... +...||.|..+.. .-.+|.
T Consensus 151 t~a~Wg~l~~~ii~Ghe~-----G~is~~da~~g~~~v~s~~~-h~~~Ind~q~s~d~T~FiT~s~Dtt-----akl~D~ 219 (327)
T KOG0643|consen 151 TSALWGPLGETIIAGHED-----GSISIYDARTGKELVDSDEE-HSSKINDLQFSRDRTYFITGSKDTT-----AKLVDV 219 (327)
T ss_pred eeeeecccCCEEEEecCC-----CcEEEEEcccCceeeechhh-hccccccccccCCcceEEecccCcc-----ceeeec
Confidence 444443 4556666644 4577888887532 111111 01111111111 3456666654432 233444
Q ss_pred CCCeEEEcCCCCCCCcceEEEEECCEEEEEecCC
Q psy17309 626 ECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFN 659 (824)
Q Consensus 626 ~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 659 (824)
.+-+-.+--..-.|....+...+.+.+.+-||.+
T Consensus 220 ~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqe 253 (327)
T KOG0643|consen 220 RTLEVLKTYTTERPVNTAAISPLLDHVILGGGQE 253 (327)
T ss_pred cceeeEEEeeecccccceecccccceEEecCCce
Confidence 4432222111122333445556688888888864
No 213
>KOG0281|consensus
Probab=40.27 E-value=2.9e+02 Score=29.03 Aligned_cols=52 Identities=10% Similarity=0.139 Sum_probs=32.8
Q ss_pred ceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 665 CNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 665 ~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
.++-+++..+..... .+...+.+-++..++|+++|.|..+. ++-.||++.+.
T Consensus 340 RTikvW~~st~efvR--tl~gHkRGIAClQYr~rlvVSGSSDn-----tIRlwdi~~G~ 391 (499)
T KOG0281|consen 340 RTIKVWSTSTCEFVR--TLNGHKRGIACLQYRDRLVVSGSSDN-----TIRLWDIECGA 391 (499)
T ss_pred ceEEEEeccceeeeh--hhhcccccceehhccCeEEEecCCCc-----eEEEEeccccH
Confidence 345566665554432 34455667778888999999987654 45555555543
No 214
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=37.43 E-value=6.8e+02 Score=28.67 Aligned_cols=235 Identities=14% Similarity=0.069 Sum_probs=117.6
Q ss_pred EEEEECCEEEEEeecCC-------------------CcccceEEEEECCCCc-eEEeccCCCCcceEEEEEECCEEEEEe
Q psy17309 503 GTAVIGYNIYVIGGFDG-------------------NEYYNSCRCFNAVTKV-WKEIAPMNFKRCYVSTAVHQDVIYAMG 562 (824)
Q Consensus 503 ~~~~~~~~lyv~GG~~~-------------------~~~~~~~~~yd~~~~~-W~~~~~~~~~r~~~~~~~~~~~iyv~G 562 (824)
.+-+.+++|.|+|.... ......+..||....+ =+.+......-...++=..++.+|++-
T Consensus 58 eLyl~gdrLvVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~vYDIsD~~~P~~~~~~~~~G~yvsSR~ig~~vy~Vt 137 (521)
T PF09826_consen 58 ELYLDGDRLVVIGSSYEYYPREPDIDSESGDTPYYYYKSSTKITVYDISDPSNPKLLREIEIEGSYVSSRKIGDYVYLVT 137 (521)
T ss_pred heEEcCCEEEEEEeccccccccccccccccccccccCCceeEEEEEECCCCCCceEEEEEEeeeEEEeEEEECCEEEEEE
Confidence 34456889999995421 1124567888876532 111111112223344555689999986
Q ss_pred cccCCCCCCeEEEEeCCCCcEEeecCCCcccCc---eEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCC
Q psy17309 563 GYNGQRRQNSVEKYNYTENQWSLIAPMNVERSD---ASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHR 639 (824)
Q Consensus 563 G~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~---~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 639 (824)
-.... .+. ..... ...-+|.-+.. .........+|+-++...... ..+-.+|..+++=.....+..
T Consensus 138 ~~~~~-----~~~--~~~~~--~~~~~P~~~~~~~~~~~~~~~~~~y~p~~~~~~~~-~~i~s~dl~~~~~~~~~~~~g- 206 (521)
T PF09826_consen 138 NSYPN-----YYA--IEEAD--LEDILPSYRDNGEEATVIVPCDIIYFPGGPSGSNY-TTITSIDLDPDKASDSTSVLG- 206 (521)
T ss_pred ecCCc-----cch--hhccc--ccccCceEEecCcceeeecccceEEecCCCCCCcE-EEEEEEeCCCCCccceeEEEe-
Confidence 53211 110 00000 00112322222 222333556676664443333 366677774433111110000
Q ss_pred CcceEEEEECCEEEEEecCCCC-----------------CccceEEEEeCCCCCEEECCC--CC-CCCcceEEEEECCEE
Q psy17309 640 RSGVSCIAYHECIYVIGGFNGM-----------------SRMCNGEKYNPVTKTWSQVPD--MY-NPRSNFAIEVIDDMI 699 (824)
Q Consensus 640 r~~~~~~~~~~~iyv~GG~~~~-----------------~~~~~v~~yd~~~~~W~~~~~--~p-~~r~~~~~~~~~~~i 699 (824)
....+-+-.+.||+..-.... .....++.|+....+.+-.+. .| .....+++=.++|.+
T Consensus 207 -~~~~vY~S~~~LYia~~~~~~~~~~~~~~~~~~~~~~~~~~T~I~kf~~~~~~~~y~~sg~V~G~llnqFsmdE~~G~L 285 (521)
T PF09826_consen 207 -SGGNVYMSENNLYIASNRYYYEPYAMMRFEASAEPEESNESTTIYKFALDGGKIEYVGSGSVPGYLLNQFSMDEYDGYL 285 (521)
T ss_pred -cCCEEEEeCCcEEEEEecccccccccchhccccccccCCCceEEEEEEccCCcEEEEEEEEECcEEcccccEeccCCEE
Confidence 111122235678877653221 234678899988877765532 22 235567777778887
Q ss_pred EEEccC------CCCceeeEEEEEECCCCcEEeccCCCCCccceeEEEEcCcccee
Q psy17309 700 FAIGGF------NGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGLPNVY 749 (824)
Q Consensus 700 ~v~GG~------~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~~~~~ 749 (824)
-|+=-. ......+.++++|..-+.=-.+..+...-.-+++-.++++.|+.
T Consensus 286 RvaTT~~~~~~~~~~~s~N~lyVLD~~L~~vG~l~~la~gE~IysvRF~Gd~~Y~V 341 (521)
T PF09826_consen 286 RVATTSGNWWWDSEDTSSNNLYVLDEDLKIVGSLEGLAPGERIYSVRFMGDRAYLV 341 (521)
T ss_pred EEEEecCcccccCCCCceEEEEEECCCCcEeEEccccCCCceEEEEEEeCCeEEEE
Confidence 776422 23346788999986655555555554443345555666665554
No 215
>KOG3881|consensus
Probab=37.19 E-value=5.6e+02 Score=27.58 Aligned_cols=148 Identities=16% Similarity=0.122 Sum_probs=74.5
Q ss_pred CEEEEEecccCCCCCCeEEEEeCCC--CcEEeecC------CCcccCceEEEEECC---EEEEEcccCCCCcCCceEEEe
Q psy17309 556 DVIYAMGGYNGQRRQNSVEKYNYTE--NQWSLIAP------MNVERSDASATTLQG---KIYITGGFNGHNCLNSCEVYD 624 (824)
Q Consensus 556 ~~iyv~GG~~~~~~~~~~~~yd~~t--~~W~~~~~------~p~~r~~~~~~~~~~---~lyv~GG~~~~~~~~~v~~yd 624 (824)
-.|.++||..+ .+.+..||..+ +.|+.-.. |-.|.....+..+.+ .-++.+ .....+-.||
T Consensus 161 p~Iva~GGke~---~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~-----T~~hqvR~YD 232 (412)
T KOG3881|consen 161 PYIVATGGKEN---INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATI-----TRYHQVRLYD 232 (412)
T ss_pred CceEecCchhc---ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEE-----ecceeEEEec
Confidence 36888888643 35566666654 45764321 334444444444443 222221 2235677899
Q ss_pred CCCCeEEEcCCCCCCCcceEEEE--ECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEEC-CEEEE
Q psy17309 625 PECNQWTLIEPMRHRRSGVSCIA--YHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVID-DMIFA 701 (824)
Q Consensus 625 ~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~-~~i~v 701 (824)
+..+. +.+..++..-...+++. -++...++|-. ...+..||.....--...---..-+--++.++. ..++.
T Consensus 233 t~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~-----~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~la 306 (412)
T KOG3881|consen 233 TRHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNT-----KGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLA 306 (412)
T ss_pred CcccC-cceeEeccccCcceeeeecCCCcEEEEecc-----cchhheecccCceeeccccCCccCCcceEEEcCCCceEE
Confidence 98654 33333332222222222 24444444432 356778888766432211000111112334444 47888
Q ss_pred EccCCCCceeeEEEEEECCCC
Q psy17309 702 IGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 702 ~GG~~~~~~~~~v~~yd~~~~ 722 (824)
.+|.+. .+-+||.+++
T Consensus 307 s~GLDR-----yvRIhD~ktr 322 (412)
T KOG3881|consen 307 SCGLDR-----YVRIHDIKTR 322 (412)
T ss_pred eeccce-----eEEEeecccc
Confidence 888765 4778898873
No 216
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=36.31 E-value=4e+02 Score=25.62 Aligned_cols=84 Identities=15% Similarity=0.104 Sum_probs=52.4
Q ss_pred CCCcceEEEECCCCcEEeeccCC---CCCCcCeEEEEEECC--EEEEEccCCCC-cccceEEEEEccCCceeEecccCCC
Q psy17309 58 SPTDFVETYDTRADRWVKIDQVD---PMGPRAYHGTAVIGY--NIYVIGGFDGN-EYYNSCRCFNAVTKVWKEIAPMNFK 131 (824)
Q Consensus 58 ~~~~~~~~~d~~~~~W~~~~~~~---~p~~R~~h~~~~~~~--~~yv~GG~~~~-~~~~~~~~~~~~~~~W~~~~~~~~~ 131 (824)
....++|++|..++.|..+...+ --.|+ -+..+++ -++|+|-.-|. .--..+++|++.|.+=.++-+....
T Consensus 85 EgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK---~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~dk 161 (200)
T PF15525_consen 85 EGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK---YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKDK 161 (200)
T ss_pred ccceeEEEEecCCCceEEEEecCcccccCCc---eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeecccc
Confidence 44788999999999997663322 12344 3444544 36666653222 2336799999999999999877654
Q ss_pred ccee-EEEEECCEE
Q psy17309 132 RCYV-STAVHQDVI 144 (824)
Q Consensus 132 R~~~-~~~~~~~~l 144 (824)
+-.. ++-..++.|
T Consensus 162 kqQVis~e~~gd~L 175 (200)
T PF15525_consen 162 KQQVISAEKNGDNL 175 (200)
T ss_pred ceeEEEEEEeCCEE
Confidence 3333 333345543
No 217
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=35.19 E-value=5.2e+02 Score=26.62 Aligned_cols=199 Identities=14% Similarity=0.133 Sum_probs=93.6
Q ss_pred EEECCCCcEEEcccCCCCCCCceeEEEEE-CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCC--cceEEEEEEC
Q psy17309 479 TYDTRADRWVKIDQVDPMGPRAYHGTAVI-GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFK--RCYVSTAVHQ 555 (824)
Q Consensus 479 ~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~--r~~~~~~~~~ 555 (824)
.-+-...+|..++...-+. -.-.++..+ +..-+++|- ...++.-+-.-+.|+.+.+-..+ ..+....+.+
T Consensus 109 ~T~DgGqsWARi~~~e~~e-g~~~sI~f~d~q~g~m~gd------~Gail~T~DgGk~Wk~l~e~~v~~~~~n~ia~s~d 181 (339)
T COG4447 109 HTTDGGQSWARIPLSEKLE-GFPDSITFLDDQRGEMLGD------QGAILKTTDGGKNWKALVEKAVGLAVPNEIARSAD 181 (339)
T ss_pred EecCCCcchhhchhhcCCC-CCcceeEEecchhhhhhcc------cceEEEecCCcccHhHhcccccchhhhhhhhhhcc
Confidence 3344556788876544332 222344444 334455543 12344444455679866543222 1112233445
Q ss_pred CEEEEEecccCCCCCCeEE-EEeCCCCcEEeecCCCcccCceEEEEE-CC--EEEEEcccCCCCcCCceEEEeCCCCeEE
Q psy17309 556 DVIYAMGGYNGQRRQNSVE-KYNYTENQWSLIAPMNVERSDASATTL-QG--KIYITGGFNGHNCLNSCEVYDPECNQWT 631 (824)
Q Consensus 556 ~~iyv~GG~~~~~~~~~~~-~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~--~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 631 (824)
|...++|-.. +++ ..+.....|..-.+ ...|.--++... .+ -+++.||.. +....+..-+.|+
T Consensus 182 ng~vaVg~rG------s~f~T~~aGqt~~~~~g~-~s~~~letmg~adag~~g~la~g~qg------~~f~~~~~gD~ws 248 (339)
T COG4447 182 NGYVAVGARG------SFFSTWGAGQTVWLPHGR-NSSRRLETMGLADAGSKGLLARGGQG------DQFSWVCGGDEWS 248 (339)
T ss_pred CCeEEEecCc------ceEecCCCCccEEeccCC-CccchhcccccccCCccceEEEcccc------ceeecCCCccccc
Confidence 5555665321 111 12222232322111 111111122222 23 467777752 2334556678898
Q ss_pred EcC-CCCCCCcceEEE----EECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcc-eEEEEE-CCEEEEEc
Q psy17309 632 LIE-PMRHRRSGVSCI----AYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSN-FAIEVI-DDMIFAIG 703 (824)
Q Consensus 632 ~~~-~~p~~r~~~~~~----~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~i~v~G 703 (824)
.++ +....|...+.. ...+.+||.|+. .++..--....+|++....+...+. ++++.. .++.+++|
T Consensus 249 d~~~~~~~g~~~~Gl~d~a~~a~~~v~v~G~g------Gnvl~StdgG~t~skd~g~~er~s~l~~V~~ts~~~~~l~G 321 (339)
T COG4447 249 DQGEPVNLGRRSWGLLDFAPRAPPEVWVSGIG------GNVLASTDGGTTWSKDGGVEERVSNLYSVVFTSPKAGFLCG 321 (339)
T ss_pred ccccchhcccCCCccccccccCCCCeEEeccC------ccEEEecCCCeeEeccCChhhhhhhhheEEeccCCceEEEc
Confidence 775 222333333332 336889998873 2333333345678877665544442 333333 67888887
No 218
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=34.36 E-value=6.4e+02 Score=27.39 Aligned_cols=248 Identities=13% Similarity=0.042 Sum_probs=113.8
Q ss_pred ceEEEEECCCCcEEE-cccCCCCCCCceeEEEEE---CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEE
Q psy17309 475 DFVETYDTRADRWVK-IDQVDPMGPRAYHGTAVI---GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVS 550 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~-~~~~~~~~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~ 550 (824)
+.+...|..+.+-.. ++. ....|+.... +.++|+.+. + ..+..+|+.+.+ .+...+......+
T Consensus 16 ~~v~viD~~t~~~~~~i~~-----~~~~h~~~~~s~Dgr~~yv~~r-d-----g~vsviD~~~~~--~v~~i~~G~~~~~ 82 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPT-----GGAPHAGLKFSPDGRYLYVANR-D-----GTVSVIDLATGK--VVATIKVGGNPRG 82 (369)
T ss_dssp TEEEEEETTT-SEEEEEE------STTEEEEEE-TT-SSEEEEEET-T-----SEEEEEETTSSS--EEEEEE-SSEEEE
T ss_pred CEEEEEECCCCeEEEEEcC-----CCCceeEEEecCCCCEEEEEcC-C-----CeEEEEECCccc--EEEEEecCCCcce
Confidence 467778887765432 211 1222444333 567999853 2 368899999987 3344444444445
Q ss_pred EEE-ECCEEEEEecccCCCCCCeEEEEeCCCCcE-Eeec--CC----CcccCceEEEEECCEEEEEcccCCCCcCCceEE
Q psy17309 551 TAV-HQDVIYAMGGYNGQRRQNSVEKYNYTENQW-SLIA--PM----NVERSDASATTLQGKIYITGGFNGHNCLNSCEV 622 (824)
Q Consensus 551 ~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W-~~~~--~~----p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~ 622 (824)
++. -+|+..+.+.+. .+.+.++|..|.+= +.++ .+ +.+|...-.+...+..||+--.+ ...++.
T Consensus 83 i~~s~DG~~~~v~n~~----~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd----~~~I~v 154 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYE----PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD----TGEIWV 154 (369)
T ss_dssp EEE--TTTEEEEEEEE----TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT----TTEEEE
T ss_pred EEEcCCCCEEEEEecC----CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc----CCeEEE
Confidence 444 355544444432 36788899887653 2222 12 22333222222345545553322 356777
Q ss_pred EeCCCCeEEEcCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEEEC---CCCCCCCcceEEEEE-CC
Q psy17309 623 YDPECNQWTLIEPMRHRRSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQV---PDMYNPRSNFAIEVI-DD 697 (824)
Q Consensus 623 yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~---~~~p~~r~~~~~~~~-~~ 697 (824)
.|.....=.....+...+.-|....- +++-|+.+-. ..+.+-..|.++++=..+ +.-|.+.....+... .|
T Consensus 155 Vdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~----~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g 230 (369)
T PF02239_consen 155 VDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN----GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFG 230 (369)
T ss_dssp EETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG----GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTE
T ss_pred EEeccccccceeeecccccccccccCcccceeeeccc----ccceeEEEeeccceEEEEeeccccccccccccccCCCcc
Confidence 77655422222233445555655544 3454444322 135788899887754332 222333333333333 24
Q ss_pred EEEEEccCCCCceeeEEEEEEC----CCCcEEeccCCCCCccceeEEEEcCcccee
Q psy17309 698 MIFAIGGFNGVTTIYHVECYDE----KTDEWYEATDMNIYRSALSACVIMGLPNVY 749 (824)
Q Consensus 698 ~i~v~GG~~~~~~~~~v~~yd~----~~~~W~~~~~~p~~r~~~~~~~~~~~~~~~ 749 (824)
.++..+|..... -...--|+ ....|+.+..++..-.++-.....+..|++
T Consensus 231 ~vw~~~~~~~~~--~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vw 284 (369)
T PF02239_consen 231 PVWATSGLGYFA--IPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVW 284 (369)
T ss_dssp EEEEEEBSSSSE--EEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEE
T ss_pred eEEeecccccee--cccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEE
Confidence 556565543221 01122233 336788876666554444444444444444
No 219
>KOG0308|consensus
Probab=34.14 E-value=5.3e+02 Score=29.76 Aligned_cols=119 Identities=14% Similarity=0.261 Sum_probs=65.6
Q ss_pred CCEEEEEccCCCCcccceEEEEEccCC----ceeEe--cccC-CCcceeEEEEECC--EEEEEcCcCCCCCCCcEEEEEC
Q psy17309 94 GYNIYVIGGFDGNEYYNSCRCFNAVTK----VWKEI--APMN-FKRCYVSTAVHQD--VIYAMGGYNGQRRQNSVEKYNY 164 (824)
Q Consensus 94 ~~~~yv~GG~~~~~~~~~~~~~~~~~~----~W~~~--~~~~-~~R~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~yd~ 164 (824)
++.+++-||.+...+ +|.++..+. +-..+ .+++ .++..--+.+.++ .|+|-||.. +++-.||+
T Consensus 129 ~~~lvaSgGLD~~If---lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte-----k~lr~wDp 200 (735)
T KOG0308|consen 129 NNELVASGGLDRKIF---LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE-----KDLRLWDP 200 (735)
T ss_pred CceeEEecCCCccEE---EEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc-----cceEEecc
Confidence 678999999887743 444443221 12222 3344 4455444444444 699989876 48888999
Q ss_pred CCCeE-EEec----cccceeeccCCeEEEEcccCCceeeceEEEEECCCCeEEEecccccCcceeeeeeecceEEEE
Q psy17309 165 TENQW-SLIA----PMNCMIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAM 236 (824)
Q Consensus 165 ~~~~W-~~~~----~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~~W~~i~~~~~~r~~~~~~~~~~~~~~~ 236 (824)
.+.+= .++- +.-.-...-+|.=.+.|+.++. +.++ .+...|+-+++.+|+.-.+++
T Consensus 201 rt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-----IrlW-----------dLgqQrCl~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 201 RTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-----IRLW-----------DLGQQRCLATYIVHKEGVWAL 261 (735)
T ss_pred ccccceeeeeccccceEEEEEcCCCCeEeecCCCce-----EEee-----------eccccceeeeEEeccCceEEE
Confidence 88741 1111 0000011223444444554443 1122 245678888888998887777
No 220
>KOG0296|consensus
Probab=33.21 E-value=6.3e+02 Score=26.97 Aligned_cols=144 Identities=14% Similarity=0.140 Sum_probs=74.2
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCC--CcEEe
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTE--NQWSL 585 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t--~~W~~ 585 (824)
++.+.+.||-+ +..+.++..++.|--.-.-..--.-.....+++.+.+.||.++ .+.++...+ .+|+.
T Consensus 75 ~~~l~aTGGgD-----D~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG-----~v~v~~~stg~~~~~~ 144 (399)
T KOG0296|consen 75 NNNLVATGGGD-----DLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSG-----KVLVFKVSTGGEQWKL 144 (399)
T ss_pred CCceEEecCCC-----ceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCc-----cEEEEEcccCceEEEe
Confidence 46677788854 4578888888875421111111122233445888888888653 455555544 45665
Q ss_pred ecCCC---cccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCC
Q psy17309 586 IAPMN---VERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMS 662 (824)
Q Consensus 586 ~~~~p---~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 662 (824)
..++. --+... .+.|+++|-.+ .++|+|......-.++=+-+..+...+-..-+|+-.+.|-.+
T Consensus 145 ~~e~~dieWl~WHp-----~a~illAG~~D-----GsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d--- 211 (399)
T KOG0296|consen 145 DQEVEDIEWLKWHP-----RAHILLAGSTD-----GSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD--- 211 (399)
T ss_pred ecccCceEEEEecc-----cccEEEeecCC-----CcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecC---
Confidence 42211 001111 23566666544 367888776643222211122222222233356666655432
Q ss_pred ccceEEEEeCCCCC
Q psy17309 663 RMCNGEKYNPVTKT 676 (824)
Q Consensus 663 ~~~~v~~yd~~~~~ 676 (824)
..+.++||++.+
T Consensus 212 --gti~~Wn~ktg~ 223 (399)
T KOG0296|consen 212 --GTIIVWNPKTGQ 223 (399)
T ss_pred --ceEEEEecCCCc
Confidence 457788887764
No 221
>KOG0265|consensus
Probab=33.12 E-value=5.8e+02 Score=26.52 Aligned_cols=131 Identities=15% Similarity=0.251 Sum_probs=68.0
Q ss_pred CCEEEEEecccCCCCCCeEEE---EeCCCCcEEeecCCCcccCceEEEEE------CCEEEEEcccCCCCcCCceEEEeC
Q psy17309 555 QDVIYAMGGYNGQRRQNSVEK---YNYTENQWSLIAPMNVERSDASATTL------QGKIYITGGFNGHNCLNSCEVYDP 625 (824)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~---yd~~t~~W~~~~~~p~~r~~~~~~~~------~~~lyv~GG~~~~~~~~~v~~yd~ 625 (824)
+|..++-||.+ ..+.. |.-..|.|..- +|..|+. ++...+.-|. -.++..||.
T Consensus 58 ~gs~~aSgG~D-----r~I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~gt-----Dk~v~~wD~ 119 (338)
T KOG0265|consen 58 DGSCFASGGSD-----RAIVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCGT-----DKTVRGWDA 119 (338)
T ss_pred CCCeEeecCCc-----ceEEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEecC-----CceEEEEec
Confidence 56777778865 23333 34455667543 5555554 2333333333 367888999
Q ss_pred CCCeEEEcC--------CCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEEC-
Q psy17309 626 ECNQWTLIE--------PMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVID- 696 (824)
Q Consensus 626 ~~~~W~~~~--------~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~- 696 (824)
++++=..-- .++..|. |...|..|.++ .++-.||..++.= ...+..++.-.++.++
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rr--------g~~lv~SgsdD----~t~kl~D~R~k~~---~~t~~~kyqltAv~f~d 184 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRR--------GPQLVCSGSDD----GTLKLWDIRKKEA---IKTFENKYQLTAVGFKD 184 (338)
T ss_pred ccceeeehhccccceeeecCcccc--------CCeEEEecCCC----ceEEEEeecccch---hhccccceeEEEEEecc
Confidence 888643321 1221122 33344444332 4567788765431 1223334444455553
Q ss_pred -CEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 697 -DMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 697 -~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
..=.+.||.++ ++.++|+..+.
T Consensus 185 ~s~qv~sggIdn-----~ikvWd~r~~d 207 (338)
T KOG0265|consen 185 TSDQVISGGIDN-----DIKVWDLRKND 207 (338)
T ss_pred cccceeeccccC-----ceeeeccccCc
Confidence 33456777764 57778876553
No 222
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=32.27 E-value=5e+02 Score=25.55 Aligned_cols=162 Identities=15% Similarity=0.105 Sum_probs=95.5
Q ss_pred EEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCC-cccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCC
Q psy17309 550 STAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMN-VERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECN 628 (824)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 628 (824)
++...+|++|.--|.-+. +.+.++|..+.+=..-.+++ ..-.+-+.+.+++.+|+.-=.+ .-...||+.+
T Consensus 50 GL~~~~g~i~esTG~yg~---S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~e-----gvaf~~d~~t- 120 (262)
T COG3823 50 GLEYLDGHILESTGLYGF---SKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKE-----GVAFKYDADT- 120 (262)
T ss_pred ceeeeCCEEEEecccccc---ceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEecc-----ceeEEEChHH-
Confidence 456678888888775443 67889999876532222333 4455667788899999885332 2345677654
Q ss_pred eEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC---EEECCCCCCCC-cceEEEEECCEEEEEcc
Q psy17309 629 QWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT---WSQVPDMYNPR-SNFAIEVIDDMIFAIGG 704 (824)
Q Consensus 629 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~---W~~~~~~p~~r-~~~~~~~~~~~i~v~GG 704 (824)
...+...+.+-.+.+.+.-+..|.+.-|. ..+..-||++-. -..+..-..|. .---.-.++|.+|.-
T Consensus 121 -~~~lg~~~y~GeGWgLt~d~~~LimsdGs------atL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyAN-- 191 (262)
T COG3823 121 -LEELGRFSYEGEGWGLTSDDKNLIMSDGS------ATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYAN-- 191 (262)
T ss_pred -hhhhcccccCCcceeeecCCcceEeeCCc------eEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEe--
Confidence 55667777788888888888887777673 345555665311 11111000010 001122234555432
Q ss_pred CCCCceeeEEEEEECCCC---cEEeccCCCC
Q psy17309 705 FNGVTTIYHVECYDEKTD---EWYEATDMNI 732 (824)
Q Consensus 705 ~~~~~~~~~v~~yd~~~~---~W~~~~~~p~ 732 (824)
--..+.|.+.||++. .|..+..++.
T Consensus 192 ---Vw~t~~I~rI~p~sGrV~~widlS~L~~ 219 (262)
T COG3823 192 ---VWQTTRIARIDPDSGRVVAWIDLSGLLK 219 (262)
T ss_pred ---eeeecceEEEcCCCCcEEEEEEccCCch
Confidence 113456888999987 4877766654
No 223
>KOG0643|consensus
Probab=31.70 E-value=5.8e+02 Score=26.09 Aligned_cols=171 Identities=12% Similarity=0.084 Sum_probs=81.0
Q ss_pred ceEEEEECCCCceEEeccCC--CCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeec-----CCCcccCce
Q psy17309 524 NSCRCFNAVTKVWKEIAPMN--FKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIA-----PMNVERSDA 596 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~-----~~p~~r~~~ 596 (824)
+++..+|..+++=...-+.+ ..|..+ ..+|.+.++--...-+....+..||.....=.... .+|.+-+..
T Consensus 74 ~t~kLWDv~tGk~la~~k~~~~Vk~~~F---~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski 150 (327)
T KOG0643|consen 74 QTAKLWDVETGKQLATWKTNSPVKRVDF---SFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI 150 (327)
T ss_pred ceeEEEEcCCCcEEEEeecCCeeEEEee---ccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccce
Confidence 56778898888643222222 223222 23555555543333334567888887744322221 123333444
Q ss_pred EEEEE--CCEEEEEcccCCCCcCCceEEEeCCCCeEE-EcCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEeC
Q psy17309 597 SATTL--QGKIYITGGFNGHNCLNSCEVYDPECNQWT-LIEPMRHRRSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNP 672 (824)
Q Consensus 597 ~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~ 672 (824)
..+.. -++..|.|+.++ .+-.||..++.=. ....... +.--.+... +...+|.|..+... ..+|.
T Consensus 151 t~a~Wg~l~~~ii~Ghe~G-----~is~~da~~g~~~v~s~~~h~-~~Ind~q~s~d~T~FiT~s~Dtta-----kl~D~ 219 (327)
T KOG0643|consen 151 TSALWGPLGETIIAGHEDG-----SISIYDARTGKELVDSDEEHS-SKINDLQFSRDRTYFITGSKDTTA-----KLVDV 219 (327)
T ss_pred eeeeecccCCEEEEecCCC-----cEEEEEcccCceeeechhhhc-cccccccccCCcceEEecccCccc-----eeeec
Confidence 44444 356666676553 6788998876421 1111111 000011111 34556655544332 23333
Q ss_pred CCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCC
Q psy17309 673 VTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGV 708 (824)
Q Consensus 673 ~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~ 708 (824)
.+-+-.+-=..-.|....++..+.+++++.||.+..
T Consensus 220 ~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~ 255 (327)
T KOG0643|consen 220 RTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAM 255 (327)
T ss_pred cceeeEEEeeecccccceecccccceEEecCCceee
Confidence 322111110111233445566678999999997653
No 224
>KOG0305|consensus
Probab=31.43 E-value=8e+02 Score=27.67 Aligned_cols=175 Identities=12% Similarity=0.110 Sum_probs=81.1
Q ss_pred eEEEEECCCCceEEeccCCCCcceEEEEEE--CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCc-ccCceEEEEE
Q psy17309 525 SCRCFNAVTKVWKEIAPMNFKRCYVSTAVH--QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNV-ERSDASATTL 601 (824)
Q Consensus 525 ~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~-~r~~~~~~~~ 601 (824)
.++.++-.+..-..+-.+. +...+.+.. +|...++|-.+ ..+++||..+.. .+..|.. .....++..-
T Consensus 198 ~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~-----g~v~iwD~~~~k--~~~~~~~~h~~rvg~laW 268 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSD-----GTVQIWDVKEQK--KTRTLRGSHASRVGSLAW 268 (484)
T ss_pred eEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecC-----CeEEEEehhhcc--ccccccCCcCceeEEEec
Confidence 3444444444444443333 333333333 46777777532 468888877654 3333333 2222333344
Q ss_pred CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCC-cceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEEE
Q psy17309 602 QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRR-SGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQ 679 (824)
Q Consensus 602 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 679 (824)
++.+...|+.++ .+..+|.....=. +..+..-+ .-++.... ++....-||.+ +.+.++|.....+..
T Consensus 269 ~~~~lssGsr~~-----~I~~~dvR~~~~~-~~~~~~H~qeVCgLkws~d~~~lASGgnD-----N~~~Iwd~~~~~p~~ 337 (484)
T KOG0305|consen 269 NSSVLSSGSRDG-----KILNHDVRISQHV-VSTLQGHRQEVCGLKWSPDGNQLASGGND-----NVVFIWDGLSPEPKF 337 (484)
T ss_pred cCceEEEecCCC-----cEEEEEEecchhh-hhhhhcccceeeeeEECCCCCeeccCCCc-----cceEeccCCCccccE
Confidence 778888887654 4555665432210 01111111 12222222 45556666643 567788873222111
Q ss_pred C-CCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCC
Q psy17309 680 V-PDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 680 ~-~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 722 (824)
- .....+....+-+-+...|+..||-.... .+..+|+.+.
T Consensus 338 ~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~---~i~fwn~~~g 378 (484)
T KOG0305|consen 338 TFTEHTAAVKALAWCPWQSGLLATGGGSADR---CIKFWNTNTG 378 (484)
T ss_pred EEeccceeeeEeeeCCCccCceEEcCCCccc---EEEEEEcCCC
Confidence 0 01111111122223367788888754332 4556666554
No 225
>KOG0278|consensus
Probab=30.83 E-value=5.7e+02 Score=25.79 Aligned_cols=124 Identities=14% Similarity=0.091 Sum_probs=63.5
Q ss_pred CCeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEEC
Q psy17309 570 QNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYH 649 (824)
Q Consensus 570 ~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 649 (824)
...|..+|..|.+=.+--.++.+....- +..+|+|..+. +-.+|-.+|+.+-.--+--.||.....++ ..-+
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~VtSlE-vs~dG~ilTia------~gssV~Fwdaksf~~lKs~k~P~nV~SAS-L~P~ 235 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPVTSLE-VSQDGRILTIA------YGSSVKFWDAKSFGLLKSYKMPCNVESAS-LHPK 235 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCCccee-eccCCCEEEEe------cCceeEEeccccccceeeccCcccccccc-ccCC
Confidence 3567777877776433323333332221 22355555442 11456666665543333234555433221 1225
Q ss_pred CEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceE-EEE--ECCEEEEEccCCCC
Q psy17309 650 ECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFA-IEV--IDDMIFAIGGFNGV 708 (824)
Q Consensus 650 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~-~~~--~~~~i~v~GG~~~~ 708 (824)
..+||.||.+ -.++.||..++.=... ......+.. ++. -+|.+|..|-.++.
T Consensus 236 k~~fVaGged-----~~~~kfDy~TgeEi~~--~nkgh~gpVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 236 KEFFVAGGED-----FKVYKFDYNTGEEIGS--YNKGHFGPVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred CceEEecCcc-----eEEEEEeccCCceeee--cccCCCCceEEEEECCCCceeeccCCCce
Confidence 6899999953 3577888877643222 111111111 222 28999999987763
No 226
>KOG0216|consensus
Probab=30.60 E-value=1e+02 Score=36.31 Aligned_cols=152 Identities=12% Similarity=0.031 Sum_probs=88.4
Q ss_pred cCcceeeeeeecceEEEEcccccccccceeEEeee--cccchhhhheeecccceecCHhhHHHHHHHHhhcChHhHHHHH
Q psy17309 219 FKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNY--TENQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQDLC 296 (824)
Q Consensus 219 ~~r~~~~~~~~~~~~~~~~g~~~e~~~~~i~l~~~--~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l~~~c 296 (824)
.+|..|.++.-+..|.-.|..+.+ --+.++-+ ++.+....|.|+-+|.+.+.......++..--.|-+..|.+.|
T Consensus 166 m~RRNHPiAiIR~Sfk~RG~~yS~---yGVsmRcVReDqSsvtn~LHYLnnGtv~~~F~~rK~eylvPv~lILKAL~~ts 242 (1111)
T KOG0216|consen 166 MPRRNHPIAIIRPSFKDRGSSYSD---YGVSMRCVREDQSSVTNVLHYLNNGTVMFRFSHRKREYLVPVVLILKALTNTT 242 (1111)
T ss_pred eccCCCceEEechhhhhcCCCccc---cceEEEEeccccccceeEEEEecCCcEEEEEEEeeeeehhhHHHHHHHHhccC
Confidence 356667777666666666544422 11233322 3445556788888888877666665666666666677777777
Q ss_pred HHHHhhcCC--------cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcCchhhhcCCHHHHHHHhcCCCc--ccC
Q psy17309 297 CDFIKRLTT--------PRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDEL--NVK 366 (824)
Q Consensus 297 ~~~l~~~l~--------~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f~~v~~~~~~f~~L~~~~l~~ll~~d~L--~v~ 366 (824)
.+-|-+.|- ..+|+.++.-.-+-.---=+++|++||-.+|..|....++ .+..++.+.+-++.+ .+.
T Consensus 243 DeEIf~~lv~g~~gdqfl~~rv~~mLr~v~ee~l~trtqcl~yLGs~FRaVl~~v~~---~~D~evg~fILr~~VlvHLd 319 (1111)
T KOG0216|consen 243 DEEIFEGLVGGDEGDQFLTSRVELMLREVQEENLFTRTQCLQYLGSRFRAVLDFVPE---QPDLEVGRFILREYVLVHLD 319 (1111)
T ss_pred HHHHHHHHhCCccCceeHHHHHHHHHHHHhhcccccHHHHHHHHhhhhhhhhcCCCC---CchHHHHHHHHHhheEEEec
Confidence 776655442 1235443332222211122789999999999977743333 666777775555544 344
Q ss_pred ChHHHHHHHH
Q psy17309 367 SEETVWELII 376 (824)
Q Consensus 367 ~E~~v~~av~ 376 (824)
+.++.|..++
T Consensus 320 ~~~DKF~lLi 329 (1111)
T KOG0216|consen 320 SDEDKFNLLI 329 (1111)
T ss_pred ccHHHHHHHH
Confidence 5555555443
No 227
>KOG0308|consensus
Probab=29.29 E-value=4.2e+02 Score=30.49 Aligned_cols=94 Identities=16% Similarity=0.296 Sum_probs=55.0
Q ss_pred CCEEEEEcccCCCCcCCceEEEeCCCCeEEEc--------CCCC-CCCcceEEEEEC--CEEEEEecCCCCCccceEEEE
Q psy17309 602 QGKIYITGGFNGHNCLNSCEVYDPECNQWTLI--------EPMR-HRRSGVSCIAYH--ECIYVIGGFNGMSRMCNGEKY 670 (824)
Q Consensus 602 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~--------~~~p-~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~v~~y 670 (824)
++.+++.||.+. .+..||..+..=+.+ .+++ .++...-+...+ +.+++-||.. +++..|
T Consensus 129 ~~~lvaSgGLD~-----~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte-----k~lr~w 198 (735)
T KOG0308|consen 129 NNELVASGGLDR-----KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE-----KDLRLW 198 (735)
T ss_pred CceeEEecCCCc-----cEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc-----cceEEe
Confidence 778999999874 567777765522111 2344 445443344443 5588888863 678899
Q ss_pred eCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCCC
Q psy17309 671 NPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNG 707 (824)
Q Consensus 671 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 707 (824)
|+.+.+ ++-.+...+....+..+ +|.=.+.|+.++
T Consensus 199 Dprt~~--kimkLrGHTdNVr~ll~~dDGt~~ls~sSDg 235 (735)
T KOG0308|consen 199 DPRTCK--KIMKLRGHTDNVRVLLVNDDGTRLLSASSDG 235 (735)
T ss_pred cccccc--ceeeeeccccceEEEEEcCCCCeEeecCCCc
Confidence 998764 22223233444444444 566666776655
No 228
>KOG0318|consensus
Probab=28.89 E-value=8.8e+02 Score=27.32 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=39.4
Q ss_pred CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 649 HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 649 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
++...++||.+ ..+++|.+..+.-.+...+...|.....+.+ +++.++.|-... .+..||.++
T Consensus 454 ~~~~vaVGG~D-----gkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~r-----kvv~yd~~s 518 (603)
T KOG0318|consen 454 DGSEVAVGGQD-----GKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASR-----KVVLYDVAS 518 (603)
T ss_pred CCCEEEEeccc-----ceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCC-----cEEEEEccc
Confidence 78889999975 3588998877665444444444555555555 666777765544 345555443
No 229
>KOG0285|consensus
Probab=28.77 E-value=7.4e+02 Score=26.42 Aligned_cols=207 Identities=12% Similarity=0.195 Sum_probs=93.2
Q ss_pred ceEEEEECCCCcEEEcccCCCC-CCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEE
Q psy17309 475 DFVETYDTRADRWVKIDQVDPM-GPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 553 (824)
Q Consensus 475 ~~~~~yd~~~~~W~~~~~~~~~-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 553 (824)
..+-++|..+++-.. .++ .--..-++++....=|+|..-.+ ..+-|||.+.++..+ .-.+|-..+
T Consensus 173 rtikIwDlatg~Lkl----tltGhi~~vr~vavS~rHpYlFs~ged----k~VKCwDLe~nkvIR------~YhGHlS~V 238 (460)
T KOG0285|consen 173 RTIKIWDLATGQLKL----TLTGHIETVRGVAVSKRHPYLFSAGED----KQVKCWDLEYNKVIR------HYHGHLSGV 238 (460)
T ss_pred ceeEEEEcccCeEEE----eecchhheeeeeeecccCceEEEecCC----CeeEEEechhhhhHH------Hhcccccee
Confidence 356677777776543 111 01111234444555666654322 568899998876321 111221111
Q ss_pred -----E-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE---CCEEEEEcccCCCCcCCceEEEe
Q psy17309 554 -----H-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL---QGKIYITGGFNGHNCLNSCEVYD 624 (824)
Q Consensus 554 -----~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd 624 (824)
+ -..+.+.||.+ ..+-++|..+..= +.-|..-+...+.+.+ +..||- |..+ .+|-.+|
T Consensus 239 ~~L~lhPTldvl~t~grD-----st~RvWDiRtr~~--V~~l~GH~~~V~~V~~~~~dpqvit-~S~D-----~tvrlWD 305 (460)
T KOG0285|consen 239 YCLDLHPTLDVLVTGGRD-----STIRVWDIRTRAS--VHVLSGHTNPVASVMCQPTDPQVIT-GSHD-----STVRLWD 305 (460)
T ss_pred EEEeccccceeEEecCCc-----ceEEEeeecccce--EEEecCCCCcceeEEeecCCCceEE-ecCC-----ceEEEee
Confidence 1 24567777754 3455667666531 1222222222222222 455542 3322 3455666
Q ss_pred CCCCeEEEcCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCc-ceEEEEECCEEEEE
Q psy17309 625 PECNQWTLIEPMRHRRSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRS-NFAIEVIDDMIFAI 702 (824)
Q Consensus 625 ~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~i~v~ 702 (824)
...++= .+.-....+...+.+.+ +..+|..++ .+.+..++.-.+.. +.++..... .-++.+..+-+++.
T Consensus 306 l~agkt-~~tlt~hkksvral~lhP~e~~fASas------~dnik~w~~p~g~f--~~nlsgh~~iintl~~nsD~v~~~ 376 (460)
T KOG0285|consen 306 LRAGKT-MITLTHHKKSVRALCLHPKENLFASAS------PDNIKQWKLPEGEF--LQNLSGHNAIINTLSVNSDGVLVS 376 (460)
T ss_pred eccCce-eEeeecccceeeEEecCCchhhhhccC------CccceeccCCccch--hhccccccceeeeeeeccCceEEE
Confidence 655431 11111111222222222 123333333 24455555433322 112211111 12344557889999
Q ss_pred ccCCCCceeeEEEEEECCCC
Q psy17309 703 GGFNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 703 GG~~~~~~~~~v~~yd~~~~ 722 (824)
||.++ .++.||-++.
T Consensus 377 G~dng-----~~~fwdwksg 391 (460)
T KOG0285|consen 377 GGDNG-----SIMFWDWKSG 391 (460)
T ss_pred cCCce-----EEEEEecCcC
Confidence 99766 5777876554
No 230
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=28.66 E-value=8.1e+02 Score=26.84 Aligned_cols=58 Identities=10% Similarity=0.083 Sum_probs=40.0
Q ss_pred CcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCC
Q psy17309 520 NEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTEN 581 (824)
Q Consensus 520 ~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~ 581 (824)
++..++++++|-.-+.--++.-+...-.-+++-..++..|++-=. .++-+++.|...-
T Consensus 402 de~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfr----qtDPlfviDlsNP 459 (603)
T COG4880 402 DEPVNAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFR----QTDPLFVIDLSNP 459 (603)
T ss_pred CCccceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEEEe----ccCceEEEEcCCC
Confidence 456788999998888777777665554556777788888887432 2445667776553
No 231
>KOG0263|consensus
Probab=28.61 E-value=4.7e+02 Score=30.65 Aligned_cols=104 Identities=12% Similarity=0.094 Sum_probs=53.6
Q ss_pred EECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEE-EECCEEEEEecCCCCCccceEEEEeCCCCCEE
Q psy17309 600 TLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCI-AYHECIYVIGGFNGMSRMCNGEKYNPVTKTWS 678 (824)
Q Consensus 600 ~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 678 (824)
.+-+.-|+++|..+ .+|-.+|..++.=..+=.-.. +.-.+.+ ..+|+-.+.|+.+ ..|..||..+.+
T Consensus 543 FHPNs~Y~aTGSsD----~tVRlWDv~~G~~VRiF~GH~-~~V~al~~Sp~Gr~LaSg~ed-----~~I~iWDl~~~~-- 610 (707)
T KOG0263|consen 543 FHPNSNYVATGSSD----RTVRLWDVSTGNSVRIFTGHK-GPVTALAFSPCGRYLASGDED-----GLIKIWDLANGS-- 610 (707)
T ss_pred ECCcccccccCCCC----ceEEEEEcCCCcEEEEecCCC-CceEEEEEcCCCceEeecccC-----CcEEEEEcCCCc--
Confidence 33567788877432 467777777765433321111 1111222 2256655555543 457788877643
Q ss_pred ECCCCCCCCcc-eE-EEEECCEEEEEccCCCCceeeEEEEEECC
Q psy17309 679 QVPDMYNPRSN-FA-IEVIDDMIFAIGGFNGVTTIYHVECYDEK 720 (824)
Q Consensus 679 ~~~~~p~~r~~-~~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 720 (824)
.+..+-..... .+ ....+|.+++.||.+. +|-+||..
T Consensus 611 ~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn-----sV~lWD~~ 649 (707)
T KOG0263|consen 611 LVKQLKGHTGTIYSLSFSRDGNVLASGGADN-----SVRLWDLT 649 (707)
T ss_pred chhhhhcccCceeEEEEecCCCEEEecCCCC-----eEEEEEch
Confidence 12222111111 11 2244899999999865 45566654
No 232
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=28.41 E-value=89 Score=21.09 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=16.7
Q ss_pred EEEEEECCEEEEEccCCCCcccceEEEEEccC
Q psy17309 88 HGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVT 119 (824)
Q Consensus 88 h~~~~~~~~~yv~GG~~~~~~~~~~~~~~~~~ 119 (824)
.+.++.++.||+-++ -..++++|++|
T Consensus 15 ~~~~v~~g~vyv~~~------dg~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTG------DGNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-T------TSEEEEEETT-
T ss_pred cCCEEECCEEEEEcC------CCEEEEEeCCC
Confidence 444777888888665 35688998865
No 233
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=28.27 E-value=4.5e+02 Score=23.80 Aligned_cols=63 Identities=17% Similarity=0.331 Sum_probs=36.8
Q ss_pred CEEEEEecCCCCCccceEEEEeCCCCC---EEECCCCCCCCcceEEEEE---CCEEEEEccCCCCceeeEEEEEECCCC-
Q psy17309 650 ECIYVIGGFNGMSRMCNGEKYNPVTKT---WSQVPDMYNPRSNFAIEVI---DDMIFAIGGFNGVTTIYHVECYDEKTD- 722 (824)
Q Consensus 650 ~~iyv~GG~~~~~~~~~v~~yd~~~~~---W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~- 722 (824)
..+.++|- .+.+..||...+. ++++++ .-....+..+ ...+.++||.. .+.-||-+-+
T Consensus 64 ~D~LliGt------~t~llaYDV~~N~d~Fyke~~D---Gvn~i~~g~~~~~~~~l~ivGGnc------si~Gfd~~G~e 128 (136)
T PF14781_consen 64 RDCLLIGT------QTSLLAYDVENNSDLFYKEVPD---GVNAIVIGKLGDIPSPLVIVGGNC------SIQGFDYEGNE 128 (136)
T ss_pred cCEEEEec------cceEEEEEcccCchhhhhhCcc---ceeEEEEEecCCCCCcEEEECceE------EEEEeCCCCcE
Confidence 45677775 3689999998775 444432 2221112222 56799999853 4666765544
Q ss_pred -cEEec
Q psy17309 723 -EWYEA 727 (824)
Q Consensus 723 -~W~~~ 727 (824)
-|+..
T Consensus 129 ~fWtVt 134 (136)
T PF14781_consen 129 IFWTVT 134 (136)
T ss_pred EEEEec
Confidence 26543
No 234
>PF06531 DUF1108: Protein of unknown function (DUF1108); InterPro: IPR009494 This entry is represented by Bacteriophage 92, Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins from Staphylococcus aureus as well as a number of phage proteins. The function of this family is unknown.
Probab=27.91 E-value=79 Score=25.49 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCccchHHHHHHhhhh
Q psy17309 369 ETVWELIIRWIDYDPENRKKHIVSLMKN 396 (824)
Q Consensus 369 ~~v~~av~~W~~~~~~~r~~~~~~ll~~ 396 (824)
+.+-.++-.|++++.+++.+...-+|+|
T Consensus 59 d~i~~aiyewIE~nTDE~DrlinlvmkW 86 (86)
T PF06531_consen 59 DIINQAIYEWIEENTDEQDRLINLVMKW 86 (86)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 3455788999999999998888777764
No 235
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=26.91 E-value=9.1e+02 Score=26.84 Aligned_cols=146 Identities=8% Similarity=-0.055 Sum_probs=72.4
Q ss_pred CeEEEEeCCCCcEEeecCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECC
Q psy17309 571 NSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHE 650 (824)
Q Consensus 571 ~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 650 (824)
..++.+|+.+..=..+...+..-..+.. .-+|+-+++-.... ...+++.+|..+.+=..+...+. ...+..-.-+|
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~f-spDG~~l~f~~~rd--g~~~iy~~dl~~~~~~~Lt~~~g-i~~~Ps~spdG 293 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAF-SPDGSKLAFSSSRD--GSPDIYLMDLDGKNLPRLTNGFG-INTSPSWSPDG 293 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccC-CCCCCEEEEEECCC--CCccEEEEcCCCCcceecccCCc-cccCccCCCCC
Confidence 4567777777665554442222111111 12333333332221 24688999988877333333222 22222223344
Q ss_pred -EEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEECC-EEEEEccCCCCceeeEEEEEECCCCc-EEec
Q psy17309 651 -CIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDD-MIFAIGGFNGVTTIYHVECYDEKTDE-WYEA 727 (824)
Q Consensus 651 -~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~ 727 (824)
+|+..-...+ ...++.+|++..+=+.+..-..... +....-++ +|.+.+ ..++. -++..+|+.++. |..+
T Consensus 294 ~~ivf~Sdr~G---~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~~-~~~g~--~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 294 SKIVFTSDRGG---RPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFES-SSGGQ--WDIDKNDLASGGKIRIL 366 (425)
T ss_pred CEEEEEeCCCC---CcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEEe-ccCCc--eeeEEeccCCCCcEEEc
Confidence 4444432222 3489999998877666532211111 22222244 444444 32222 578999998877 8876
No 236
>KOG1778|consensus
Probab=26.13 E-value=84 Score=33.11 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=79.7
Q ss_pred cceeEEeeecccchhhhheeecccceecCHhh--HHHHHHHHhhcChHhHHHHHHHHHhh-cCCcchHHHHHHHHHHcCC
Q psy17309 245 QNSVEKYNYTENQDKIEEKKLFERKLHITEDN--VASLLLATDFFCMSKAQDLCCDFIKR-LTTPRNCFGILLFSRDHFC 321 (824)
Q Consensus 245 ~~~i~l~~~~~~~~~~ll~~~Yt~~l~l~~~~--v~~ll~~a~~~~i~~l~~~c~~~l~~-~l~~~N~~~i~~~a~~~~~ 321 (824)
...+.+..++...+..+..++|.. +.-.+.+ ...++.+...+-++..+..|..-+.. .++..|+...+..+..+..
T Consensus 65 ~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~ 143 (319)
T KOG1778|consen 65 VKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDF 143 (319)
T ss_pred hhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhhhhhhccCccccCCccccchhhhhHHHHHHHHHHHhccc
Confidence 345667778888999999999998 5444444 45566666788899999999988877 7788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHc
Q psy17309 322 KKLEEWTRKYILRNFVDVAR 341 (824)
Q Consensus 322 ~~L~~~~~~~i~~~f~~v~~ 341 (824)
..|..++...+...|.....
T Consensus 144 ~~lr~a~hss~~~~~~~H~~ 163 (319)
T KOG1778|consen 144 SDLRRAKHSSIMLLFDLHLQ 163 (319)
T ss_pred chHHHHHHHHHHHHHHHHhc
Confidence 99999999999999988774
No 237
>KOG0294|consensus
Probab=25.90 E-value=7.9e+02 Score=25.78 Aligned_cols=46 Identities=4% Similarity=-0.091 Sum_probs=25.0
Q ss_pred CcEEEcccCCCCCCCceeEEEEECCEEEEEeecCCCcccceEEEEECCCCc
Q psy17309 485 DRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKV 535 (824)
Q Consensus 485 ~~W~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~yd~~~~~ 535 (824)
.+|...|.-..+..-..-+++.+.+...+.||.+ ..+.+||..+++
T Consensus 29 ~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssD-----etI~IYDm~k~~ 74 (362)
T KOG0294|consen 29 VKPTLKPLFAFSAHAGSITALAVSGPYVASGSSD-----ETIHIYDMRKRK 74 (362)
T ss_pred cceeeeccccccccccceeEEEecceeEeccCCC-----CcEEEEeccchh
Confidence 3454433322332333345555666666666643 568999987653
No 238
>KOG2714|consensus
Probab=25.89 E-value=35 Score=36.73 Aligned_cols=44 Identities=11% Similarity=0.018 Sum_probs=37.0
Q ss_pred eeecccchhhhheeecccceecCHhhHHHHHH-HHhhcChHhHHH
Q psy17309 251 YNYTENQDKIEEKKLFERKLHITEDNVASLLL-ATDFFCMSKAQD 294 (824)
Q Consensus 251 ~~~~~~~~~~ll~~~Yt~~l~l~~~~v~~ll~-~a~~~~i~~l~~ 294 (824)
-|=+++.|..||+|+-||++.++..-...++. -|.+|++..++.
T Consensus 58 IDRDPdlFaviLn~LRTg~L~~~g~~~~~llhdEA~fYGl~~llr 102 (465)
T KOG2714|consen 58 IDRDPDLFAVILNLLRTGDLDASGVFPERLLHDEAMFYGLTPLLR 102 (465)
T ss_pred ecCCchHHHHHHHHHhcCCCCCccCchhhhhhhhhhhcCcHHHHH
Confidence 35589999999999999999997766655665 999999988886
No 239
>KOG1523|consensus
Probab=25.44 E-value=7.4e+02 Score=26.01 Aligned_cols=138 Identities=14% Similarity=0.189 Sum_probs=67.2
Q ss_pred cceEEEEECCCCc-eEEeccCCCCcceEEEEEE---CCEEEEEecccCCCCCCeEEEEeC-CCCcEEeecCCCcccCceE
Q psy17309 523 YNSCRCFNAVTKV-WKEIAPMNFKRCYVSTAVH---QDVIYAMGGYNGQRRQNSVEKYNY-TENQWSLIAPMNVERSDAS 597 (824)
Q Consensus 523 ~~~~~~yd~~~~~-W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~-~t~~W~~~~~~p~~r~~~~ 597 (824)
..++.+|.-..+. |.....+...-..-..+-. .++|.- ++.+ ...+++.. ...+|....-+. |.+-+
T Consensus 31 ~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvt-cs~d-----rnayVw~~~~~~~WkptlvLl--RiNrA 102 (361)
T KOG1523|consen 31 NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVT-CSHD-----RNAYVWTQPSGGTWKPTLVLL--RINRA 102 (361)
T ss_pred CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeE-ccCC-----CCccccccCCCCeeccceeEE--Eeccc
Confidence 3678999988888 9887766443222222111 334433 3322 33455665 778897654332 22222
Q ss_pred EEEE----CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcC-CCCCCCcceEEE-EE-CCEEEEEecCCCCCccceEEEE
Q psy17309 598 ATTL----QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIE-PMRHRRSGVSCI-AY-HECIYVIGGFNGMSRMCNGEKY 670 (824)
Q Consensus 598 ~~~~----~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~-~~-~~~iyv~GG~~~~~~~~~v~~y 670 (824)
+..+ +...|++|+- ...-+|..|.-+.+=|..-- ..| -|+...++ -+ ++.+...|+.+...+.-+.++=
T Consensus 103 At~V~WsP~enkFAVgSg---ar~isVcy~E~ENdWWVsKhikkP-irStv~sldWhpnnVLlaaGs~D~k~rVfSayIK 178 (361)
T KOG1523|consen 103 ATCVKWSPKENKFAVGSG---ARLISVCYYEQENDWWVSKHIKKP-IRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIK 178 (361)
T ss_pred eeeEeecCcCceEEeccC---ccEEEEEEEecccceehhhhhCCc-cccceeeeeccCCcceecccccCcceeEEEEeee
Confidence 2222 4445566552 23456777777666564321 112 13322222 11 4555555555544433333433
Q ss_pred eC
Q psy17309 671 NP 672 (824)
Q Consensus 671 d~ 672 (824)
+.
T Consensus 179 ~V 180 (361)
T KOG1523|consen 179 GV 180 (361)
T ss_pred cc
Confidence 33
No 240
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=25.30 E-value=6.2e+02 Score=24.41 Aligned_cols=72 Identities=11% Similarity=0.116 Sum_probs=40.1
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeec
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIA 587 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~ 587 (824)
++.+.++-|..+ ..+..||.....-. .++........-.-+|+..++||..+. ..++..||.. +++.+.
T Consensus 71 g~~favi~g~~~----~~v~lyd~~~~~i~---~~~~~~~n~i~wsP~G~~l~~~g~~n~--~G~l~~wd~~--~~~~i~ 139 (194)
T PF08662_consen 71 GNEFAVIYGSMP----AKVTLYDVKGKKIF---SFGTQPRNTISWSPDGRFLVLAGFGNL--NGDLEFWDVR--KKKKIS 139 (194)
T ss_pred CCEEEEEEccCC----cccEEEcCcccEeE---eecCCCceEEEECCCCCEEEEEEccCC--CcEEEEEECC--CCEEee
Confidence 566666655322 36888998633333 333222222233347888888886532 2568899988 344444
Q ss_pred CCC
Q psy17309 588 PMN 590 (824)
Q Consensus 588 ~~p 590 (824)
...
T Consensus 140 ~~~ 142 (194)
T PF08662_consen 140 TFE 142 (194)
T ss_pred ccc
Confidence 433
No 241
>KOG0279|consensus
Probab=25.19 E-value=7.6e+02 Score=25.40 Aligned_cols=147 Identities=12% Similarity=0.148 Sum_probs=74.5
Q ss_pred EEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEE-ECCEEEEEcccCCCCcCCceEEEeCCCCeE
Q psy17309 552 AVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATT-LQGKIYITGGFNGHNCLNSCEVYDPECNQW 630 (824)
Q Consensus 552 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 630 (824)
+..++...+-|+++ ..+..+|..+.+=+.. -....+.-.+++. -+++-.|.|-.+ +++-.||...+.=
T Consensus 71 ~s~dg~~alS~swD-----~~lrlWDl~~g~~t~~-f~GH~~dVlsva~s~dn~qivSGSrD-----kTiklwnt~g~ck 139 (315)
T KOG0279|consen 71 LSSDGNFALSASWD-----GTLRLWDLATGESTRR-FVGHTKDVLSVAFSTDNRQIVSGSRD-----KTIKLWNTLGVCK 139 (315)
T ss_pred EccCCceEEecccc-----ceEEEEEecCCcEEEE-EEecCCceEEEEecCCCceeecCCCc-----ceeeeeeecccEE
Confidence 33466777777654 3466677776532111 0011111112222 256666666544 4566666655543
Q ss_pred EEcCCCCCCCcceEEEEE--C--CEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcce--EEEEECCEEEEEcc
Q psy17309 631 TLIEPMRHRRSGVSCIAY--H--ECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNF--AIEVIDDMIFAIGG 704 (824)
Q Consensus 631 ~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~--~~~~~~~~i~v~GG 704 (824)
-++..-.. |...+++.+ + +-+++-+|.+ ..|-++|+.+-+=.. ..+..-... ..+..+|.+...||
T Consensus 140 ~t~~~~~~-~~WVscvrfsP~~~~p~Ivs~s~D-----ktvKvWnl~~~~l~~--~~~gh~~~v~t~~vSpDGslcasGg 211 (315)
T KOG0279|consen 140 YTIHEDSH-REWVSCVRFSPNESNPIIVSASWD-----KTVKVWNLRNCQLRT--TFIGHSGYVNTVTVSPDGSLCASGG 211 (315)
T ss_pred EEEecCCC-cCcEEEEEEcCCCCCcEEEEccCC-----ceEEEEccCCcchhh--ccccccccEEEEEECCCCCEEecCC
Confidence 33332111 444555544 2 4566666654 467778877654222 122211222 23334999999999
Q ss_pred CCCCceeeEEEEEECCCC
Q psy17309 705 FNGVTTIYHVECYDEKTD 722 (824)
Q Consensus 705 ~~~~~~~~~v~~yd~~~~ 722 (824)
.++ .+..+|.+..
T Consensus 212 kdg-----~~~LwdL~~~ 224 (315)
T KOG0279|consen 212 KDG-----EAMLWDLNEG 224 (315)
T ss_pred CCc-----eEEEEEccCC
Confidence 877 4556665554
No 242
>KOG0279|consensus
Probab=24.98 E-value=7.7e+02 Score=25.37 Aligned_cols=185 Identities=10% Similarity=0.086 Sum_probs=91.2
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEEeccCCCCcceEEEEE-ECCEEEEEecccCCCCCCeEEEEeCCCCcEEee
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV-HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI 586 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~ 586 (824)
++...+.|+.+ ..+..+|..+.+=...--- ..+.-.+++. .++.-.+-|-.+ +.+-.||...+.=-.+
T Consensus 74 dg~~alS~swD-----~~lrlWDl~~g~~t~~f~G-H~~dVlsva~s~dn~qivSGSrD-----kTiklwnt~g~ck~t~ 142 (315)
T KOG0279|consen 74 DGNFALSASWD-----GTLRLWDLATGESTRRFVG-HTKDVLSVAFSTDNRQIVSGSRD-----KTIKLWNTLGVCKYTI 142 (315)
T ss_pred CCceEEecccc-----ceEEEEEecCCcEEEEEEe-cCCceEEEEecCCCceeecCCCc-----ceeeeeeecccEEEEE
Confidence 66666666654 3567788777532211000 0111112222 245555555432 4455556555432222
Q ss_pred cCCCcccCceEEEEE--C--CEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEE--EEECCEEEEEecCCC
Q psy17309 587 APMNVERSDASATTL--Q--GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSC--IAYHECIYVIGGFNG 660 (824)
Q Consensus 587 ~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~iyv~GG~~~ 660 (824)
..-.. |.-..++.+ + +-+.+-+|.+ ..+-++|..+-+-. ...+..-..... +.-+|.+.+.||.++
T Consensus 143 ~~~~~-~~WVscvrfsP~~~~p~Ivs~s~D-----ktvKvWnl~~~~l~--~~~~gh~~~v~t~~vSpDGslcasGgkdg 214 (315)
T KOG0279|consen 143 HEDSH-REWVSCVRFSPNESNPIIVSASWD-----KTVKVWNLRNCQLR--TTFIGHSGYVNTVTVSPDGSLCASGGKDG 214 (315)
T ss_pred ecCCC-cCcEEEEEEcCCCCCcEEEEccCC-----ceEEEEccCCcchh--hccccccccEEEEEECCCCCEEecCCCCc
Confidence 22111 333333333 2 4566666655 46777887765422 122222222223 344899999999754
Q ss_pred CCccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCc
Q psy17309 661 MSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDE 723 (824)
Q Consensus 661 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 723 (824)
.+..+|+...+= +-.+...-.-++++...++.++.-+... .|-+||.+++.
T Consensus 215 -----~~~LwdL~~~k~--lysl~a~~~v~sl~fspnrywL~~at~~-----sIkIwdl~~~~ 265 (315)
T KOG0279|consen 215 -----EAMLWDLNEGKN--LYSLEAFDIVNSLCFSPNRYWLCAATAT-----SIKIWDLESKA 265 (315)
T ss_pred -----eEEEEEccCCce--eEeccCCCeEeeEEecCCceeEeeccCC-----ceEEEeccchh
Confidence 345556544331 2223333334556666777777765543 47777777653
No 243
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=24.74 E-value=8.6e+02 Score=25.84 Aligned_cols=117 Identities=14% Similarity=0.144 Sum_probs=58.7
Q ss_pred eCCCCeEEEcCCCCC-C-CcceEEEEE-CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCC-----------CCCCcc
Q psy17309 624 DPECNQWTLIEPMRH-R-RSGVSCIAY-HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDM-----------YNPRSN 689 (824)
Q Consensus 624 d~~~~~W~~~~~~p~-~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-----------p~~r~~ 689 (824)
|-.-.+|+.....+. . -....++.+ +|+|+++-..+.... ..+..-+-...+|+..... +.+...
T Consensus 180 ~D~G~tW~~~~~~~~~~~~~e~~i~el~dG~l~~~~R~~~~~~-~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~g~~ 258 (351)
T cd00260 180 DDSGKTWKLGEGVNDAGGCSECSVVELSDGKLYMYTRDNSGGR-RPVYESRDMGTTWTEALGTLSRVWGNCPTRCGSGVQ 258 (351)
T ss_pred CCCCCCcEECCCCCCCCCCcCCEEEEecCCEEEEEEeeCCCCc-EEEEEEcCCCcCcccCcCCccccccccccCCCCccc
Confidence 333467986544332 2 234456666 899998876442111 1122222245789887432 222222
Q ss_pred eEEEEE----CCEEEEEccCCCC--ceeeEEEEEECCCCcEEeccCCCCCc--cceeEEE
Q psy17309 690 FAIEVI----DDMIFAIGGFNGV--TTIYHVECYDEKTDEWYEATDMNIYR--SALSACV 741 (824)
Q Consensus 690 ~~~~~~----~~~i~v~GG~~~~--~~~~~v~~yd~~~~~W~~~~~~p~~r--~~~~~~~ 741 (824)
.++..+ +..++++...... ..--.+++-+-...+|.....+...- ..+++..
T Consensus 259 ~~~i~~~~~~g~~~ll~~~~~~~~~R~~l~l~~s~d~g~~w~~~~~i~~~~~~~~Ys~~~ 318 (351)
T cd00260 259 GSFITATIESGKKVMLLSRPNSPDSRSNLTLWLTDNNGSRWLDVGPISNGTDGSGYSTLT 318 (351)
T ss_pred ceEEEeEecCCCEEEEEeCCCCCCCCCceEEEEEeCCCceEEeeeeeccCCCceEEeeee
Confidence 333333 3356666543221 12224566655557999886554443 4444433
No 244
>PF01756 ACOX: Acyl-CoA oxidase; InterPro: IPR002655 Acyl-CoA oxidase (ACO) acts on CoA derivatives of fatty acids with chain lengths from 8 to 18. It catalyses the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids []. Acyl-CoA oxidase is a homodimer and the polypeptide chain of the subunit is folded into the N-terminal alpha-domain, beta-domain, and C-terminal alpha-domain []. Functional differences between the peroxisomal acyl-CoA oxidases and the mitochondrial acyl-CoA dehydrogenases are attributed to structural differences in the FAD environments []. Experimental data indicate that, in the pumpkin, the expression pattern of ACOX is very similar to that of the glyoxysomal enzyme 3-ketoacyl-CoA thiolase []. In humans, defects in ACOX1 are the cause of pseudoneonatal adrenoleukodystrophy, also known as peroxisomal acyl-CoA oxidase deficiency. Pseudo-NALD is a peroxisomal single-enzyme disorder. Clinical features include mental retardation, leukodystrophy, seizures, mild hepatomegaly and hearing deficit. Pseudo-NALD is characterised by increased plasma levels of very-long chain fatty acids due to a decrease in, or absence of, peroxisome acyl-CoA oxidase activity, despite the peroxisomes being intact and functioning. This entry represents the Acyl-CoA oxidase C-terminal.; GO: 0003997 acyl-CoA oxidase activity, 0006635 fatty acid beta-oxidation, 0055114 oxidation-reduction process, 0005777 peroxisome; PDB: 2FON_A 1IS2_B 2DDH_A 1W07_B.
Probab=24.03 E-value=1e+02 Score=29.66 Aligned_cols=60 Identities=10% Similarity=0.046 Sum_probs=37.4
Q ss_pred HHHHHHHHhhcChHhHHHHHHHHHh-hcCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy17309 277 VASLLLATDFFCMSKAQDLCCDFIK-RLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNF 336 (824)
Q Consensus 277 v~~ll~~a~~~~i~~l~~~c~~~l~-~~l~~~N~~~i~~~a~~~~~~~L~~~~~~~i~~~f 336 (824)
...+..+|..+.---+.+...+.+. ...+++...-+-.++..|.+..+.+..-.|+...+
T Consensus 45 ~~~l~~~a~Ah~e~~i~~~f~~~i~~~~~~~~~~~vL~~L~~Lyal~~i~~~~g~fl~~g~ 105 (187)
T PF01756_consen 45 SVQLVRAAKAHAERYILEQFIEAIQSSCADPEVRQVLRQLCQLYALSIIEENAGDFLEHGY 105 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSG-SSTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHhHHHHHHHHHHHHhCCc
Confidence 3555666666555555555666666 55556666667777777777777776666665543
No 245
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=24.00 E-value=6.2e+02 Score=25.88 Aligned_cols=125 Identities=11% Similarity=0.047 Sum_probs=72.7
Q ss_pred cchhhhheeecccceecCHhhHHHHHHHHhhcChHhH-HHHHHHHHhhcCCcchHHHHHHHH------HHcCCHHHHHHH
Q psy17309 256 NQDKIEEKKLFERKLHITEDNVASLLLATDFFCMSKA-QDLCCDFIKRLTTPRNCFGILLFS------RDHFCKKLEEWT 328 (824)
Q Consensus 256 ~~~~~ll~~~Yt~~l~l~~~~v~~ll~~a~~~~i~~l-~~~c~~~l~~~l~~~N~~~i~~~a------~~~~~~~L~~~~ 328 (824)
..++.++.-+-..+-.++..=...||.+|..+..... +..-+.-+-.+++..+.-.++.-+ ..|..+-+++..
T Consensus 71 ~llEtiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv 150 (258)
T PF03000_consen 71 ELLETIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIV 150 (258)
T ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHH
Confidence 3456677777776667777777888888877776442 222333333455555555554444 334555555555
Q ss_pred HHHHHH--------------------------------HHHHHHcCchhhhcCCHHHHHHHhcC-CCcccCChHHHHHHH
Q psy17309 329 RKYILR--------------------------------NFVDVARESEEIVFISEQELEEIISS-DELNVKSEETVWELI 375 (824)
Q Consensus 329 ~~~i~~--------------------------------~f~~v~~~~~~f~~L~~~~l~~ll~~-d~L~v~~E~~v~~av 375 (824)
..|+.. .+.+++. . -+|+...+..+... ..-...+.+.+|.||
T Consensus 151 ~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~-D---~~L~~~kF~~Lae~lP~~aR~~hD~LYrAI 226 (258)
T PF03000_consen 151 EHFLSQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAP-D---PNLKPSKFVALAEALPDSARPSHDGLYRAI 226 (258)
T ss_pred HHHHhcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcC-C---CCCCHHHHHHHHHHCCHhhhhccchHHHHH
Confidence 555555 1122221 1 24777777766542 122335688899999
Q ss_pred HHHHhcCcc
Q psy17309 376 IRWIDYDPE 384 (824)
Q Consensus 376 ~~W~~~~~~ 384 (824)
...++..+.
T Consensus 227 D~YLk~Hp~ 235 (258)
T PF03000_consen 227 DIYLKAHPG 235 (258)
T ss_pred HHHHHHccc
Confidence 999987665
No 246
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=24.00 E-value=1e+03 Score=26.44 Aligned_cols=149 Identities=9% Similarity=-0.044 Sum_probs=75.2
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEECC
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQG 603 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~ 603 (824)
..++.+|..++.=..+.+.+..-. +-...-+|+-+++-.... ...+++.+|..+++=.++...+..-. +..-.-+|
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~-~P~fspDG~~l~f~~~rd--g~~~iy~~dl~~~~~~~Lt~~~gi~~-~Ps~spdG 293 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNG-APAFSPDGSKLAFSSSRD--GSPDIYLMDLDGKNLPRLTNGFGINT-SPSWSPDG 293 (425)
T ss_pred ceEEEEeccCCccceeeccCCccC-CccCCCCCCEEEEEECCC--CCccEEEEcCCCCcceecccCCcccc-CccCCCCC
Confidence 457777777766554444321111 112223444444433222 23678999998877333333322222 22222244
Q ss_pred EEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCC-EEECC
Q psy17309 604 KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT-WSQVP 681 (824)
Q Consensus 604 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~ 681 (824)
+-+||.- +......++.+|++..+=+.+..-..... +....-+|+.+++-+..+.. ..+..+|+.++. |+.+.
T Consensus 294 ~~ivf~S--dr~G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~~~~~g~--~~i~~~~~~~~~~~~~lt 367 (425)
T COG0823 294 SKIVFTS--DRGGRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFESSSGGQ--WDIDKNDLASGGKIRILT 367 (425)
T ss_pred CEEEEEe--CCCCCcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEEeccCCc--eeeEEeccCCCCcEEEcc
Confidence 4344431 11223589999999887666543222222 33333355545544433111 678899998777 88875
No 247
>KOG0263|consensus
Probab=23.91 E-value=7e+02 Score=29.28 Aligned_cols=90 Identities=16% Similarity=0.220 Sum_probs=42.7
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEE-CCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEE--E
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASAT--T 600 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~--~ 600 (824)
..|..+|..++.=.++-.-. .+.-.++++. .|+-.+.|+.+ ..+-.||..+.+ .+..+-.....-... .
T Consensus 557 ~tVRlWDv~~G~~VRiF~GH-~~~V~al~~Sp~Gr~LaSg~ed-----~~I~iWDl~~~~--~v~~l~~Ht~ti~SlsFS 628 (707)
T KOG0263|consen 557 RTVRLWDVSTGNSVRIFTGH-KGPVTALAFSPCGRYLASGDED-----GLIKIWDLANGS--LVKQLKGHTGTIYSLSFS 628 (707)
T ss_pred ceEEEEEcCCCcEEEEecCC-CCceEEEEEcCCCceEeecccC-----CcEEEEEcCCCc--chhhhhcccCceeEEEEe
Confidence 34555665555433332111 1122233333 45544555432 346777777654 222222211111111 3
Q ss_pred ECCEEEEEcccCCCCcCCceEEEeCC
Q psy17309 601 LQGKIYITGGFNGHNCLNSCEVYDPE 626 (824)
Q Consensus 601 ~~~~lyv~GG~~~~~~~~~v~~yd~~ 626 (824)
.+|.+++.||.+ ++|-.||..
T Consensus 629 ~dg~vLasgg~D-----nsV~lWD~~ 649 (707)
T KOG0263|consen 629 RDGNVLASGGAD-----NSVRLWDLT 649 (707)
T ss_pred cCCCEEEecCCC-----CeEEEEEch
Confidence 388999999976 456666654
No 248
>KOG0272|consensus
Probab=23.83 E-value=9.7e+02 Score=26.14 Aligned_cols=110 Identities=17% Similarity=0.282 Sum_probs=58.7
Q ss_pred ECCEEEEEecccCCCCCCeEEEEeCCCCcEEeecCCCcccCceEEEEE-CCEEEEEcccCCCCcCCceEEEeCCCCeEEE
Q psy17309 554 HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTL-QGKIYITGGFNGHNCLNSCEVYDPECNQWTL 632 (824)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 632 (824)
.+|.+.+.||.+.. .-++|..+..-...=.- ..+.-+++... +|...+.||.+ +++-++|....+=
T Consensus 313 ~DGSL~~tGGlD~~-----~RvWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~D-----nt~kVWDLR~r~~-- 379 (459)
T KOG0272|consen 313 PDGSLAATGGLDSL-----GRVWDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSD-----NTCKVWDLRMRSE-- 379 (459)
T ss_pred CCCceeeccCccch-----hheeecccCcEEEEecc-cccceeeEeECCCceEEeecCCC-----CcEEEeeeccccc--
Confidence 48999999997633 22446666554322111 22222333322 78888888865 4556666654321
Q ss_pred cCCCCCCCcceEEEEE---CCEEEEEecCCCCCccceEEEEeCCCCCEEECCCC
Q psy17309 633 IEPMRHRRSGVSCIAY---HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDM 683 (824)
Q Consensus 633 ~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 683 (824)
+..||.-+.-.+-+-+ .|+..+.++++ +.+-+|. +..|+.+..|
T Consensus 380 ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD-----~t~kiWs--~~~~~~~ksL 426 (459)
T KOG0272|consen 380 LYTIPAHSNLVSQVKYSPQEGYFLVTASYD-----NTVKIWS--TRTWSPLKSL 426 (459)
T ss_pred ceecccccchhhheEecccCCeEEEEcccC-----cceeeec--CCCcccchhh
Confidence 3344543333222322 46777777765 3344453 4567776655
No 249
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=23.66 E-value=6.7e+02 Score=24.19 Aligned_cols=90 Identities=11% Similarity=0.083 Sum_probs=46.4
Q ss_pred CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECC
Q psy17309 602 QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP 681 (824)
Q Consensus 602 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 681 (824)
++++.|+-|... ..+..||.+. ..+..++......-.-.-+|+..++||..+. ..++..||.. ++..+.
T Consensus 71 g~~favi~g~~~----~~v~lyd~~~---~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~--~G~l~~wd~~--~~~~i~ 139 (194)
T PF08662_consen 71 GNEFAVIYGSMP----AKVTLYDVKG---KKIFSFGTQPRNTISWSPDGRFLVLAGFGNL--NGDLEFWDVR--KKKKIS 139 (194)
T ss_pred CCEEEEEEccCC----cccEEEcCcc---cEeEeecCCCceEEEECCCCCEEEEEEccCC--CcEEEEEECC--CCEEee
Confidence 455656645321 3788899863 3333333222221111227888888886532 2568899987 444554
Q ss_pred CCCCCCcceEEEEE--CCEEEEEcc
Q psy17309 682 DMYNPRSNFAIEVI--DDMIFAIGG 704 (824)
Q Consensus 682 ~~p~~r~~~~~~~~--~~~i~v~GG 704 (824)
....+.. ..+.. +|+.++...
T Consensus 140 ~~~~~~~--t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 140 TFEHSDA--TDVEWSPDGRYLATAT 162 (194)
T ss_pred ccccCcE--EEEEEcCCCCEEEEEE
Confidence 4333221 22222 566666544
No 250
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=22.92 E-value=65 Score=26.86 Aligned_cols=27 Identities=7% Similarity=0.135 Sum_probs=23.5
Q ss_pred HHHHHHHhhcChHhHHHHHHHHHhhcC
Q psy17309 278 ASLLLATDFFCMSKAQDLCCDFIKRLT 304 (824)
Q Consensus 278 ~~ll~~a~~~~i~~l~~~c~~~l~~~l 304 (824)
.+++.+|+.++.+.|.+.|.+|+.+++
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~nf 28 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILKNF 28 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 467888999999999999999998754
No 251
>KOG0973|consensus
Probab=22.42 E-value=1.5e+03 Score=27.82 Aligned_cols=22 Identities=9% Similarity=0.311 Sum_probs=15.5
Q ss_pred CCEEEEEcccCCCCcCCceEEEeCCCC
Q psy17309 602 QGKIYITGGFNGHNCLNSCEVYDPECN 628 (824)
Q Consensus 602 ~~~lyv~GG~~~~~~~~~v~~yd~~~~ 628 (824)
++.+++.+|.+ ++|..||..+-
T Consensus 140 ~~~~lvS~s~D-----nsViiwn~~tF 161 (942)
T KOG0973|consen 140 DDSLLVSVSLD-----NSVIIWNAKTF 161 (942)
T ss_pred CccEEEEeccc-----ceEEEEccccc
Confidence 57788887765 56777876554
No 252
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=22.21 E-value=9.3e+02 Score=25.34 Aligned_cols=191 Identities=9% Similarity=0.026 Sum_probs=95.0
Q ss_pred ceEEEEECCCCceEEeccCCCCcceEEEEEECCEEEEEecccCCCCCCeEEEEeCCCCc-EEeec----CCCcccCceEE
Q psy17309 524 NSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ-WSLIA----PMNVERSDASA 598 (824)
Q Consensus 524 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~-W~~~~----~~p~~r~~~~~ 598 (824)
+.+++||+.++.=+..... .........-.++.|.+.. ..+..+++.+.. |+.++ ..+..|.+=..
T Consensus 47 ~~i~r~~~~~g~~~~~~~p-~~~~~~~~~d~~g~Lv~~~--------~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~ 117 (307)
T COG3386 47 GRIHRLDPETGKKRVFPSP-GGFSSGALIDAGGRLIACE--------HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGV 117 (307)
T ss_pred CeEEEecCCcCceEEEECC-CCcccceeecCCCeEEEEc--------cccEEEeccCCceeEEeccccCCCCcCCCCcee
Confidence 5688899987654433221 1112222222244555442 335566664433 35553 34556776666
Q ss_pred EEECCEEEEEccc------CCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEEEECC-EEEEEecCCCCCccceEEEEe
Q psy17309 599 TTLQGKIYITGGF------NGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHE-CIYVIGGFNGMSRMCNGEKYN 671 (824)
Q Consensus 599 ~~~~~~lyv~GG~------~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd 671 (824)
+.-+|.+|+---. ........++++||. ...+++-.-.......-+..-++ .+|+.-- ..+.+++|+
T Consensus 118 v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpDg~tly~aDT-----~~~~i~r~~ 191 (307)
T COG3386 118 VDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPDGKTLYVADT-----PANRIHRYD 191 (307)
T ss_pred EcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEecCceEECCCCCEEEEEeC-----CCCeEEEEe
Confidence 6667888764322 122345589999994 44554432111111111222244 6776632 246778887
Q ss_pred CCC------C--CEEECCCCCCCCcceEEEEECCEEEEEccCCCCceeeEEEEEECCCCcEEeccCCCCCcc
Q psy17309 672 PVT------K--TWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRS 735 (824)
Q Consensus 672 ~~~------~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 735 (824)
... + .+.... ....+-...++--+|.||+....++ ..+.+|+|+ .+=...-.+|..+.
T Consensus 192 ~d~~~g~~~~~~~~~~~~-~~~G~PDG~~vDadG~lw~~a~~~g----~~v~~~~pd-G~l~~~i~lP~~~~ 257 (307)
T COG3386 192 LDPATGPIGGRRGFVDFD-EEPGLPDGMAVDADGNLWVAAVWGG----GRVVRFNPD-GKLLGEIKLPVKRP 257 (307)
T ss_pred cCcccCccCCcceEEEcc-CCCCCCCceEEeCCCCEEEecccCC----ceEEEECCC-CcEEEEEECCCCCC
Confidence 653 0 111111 1112223334445888997655443 268899998 33333334554333
No 253
>KOG0299|consensus
Probab=21.39 E-value=8.8e+02 Score=26.73 Aligned_cols=152 Identities=13% Similarity=0.073 Sum_probs=0.0
Q ss_pred EEEEEECCEEEEEecccCCCCCCeEEEEeCCCCcEEee-cCCCcccCceEEEEECCEEEEEcccCCCCcCCceEEEeCCC
Q psy17309 549 VSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLI-APMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPEC 627 (824)
Q Consensus 549 ~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~~-~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~ 627 (824)
..++..+++.++.||.+ +.+.++|+.+..=.+. +....+..+.+.----+.+|.. ....++-+|+.+.
T Consensus 207 ~~avS~Dgkylatgg~d-----~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~------s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGGRD-----RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSA------SADRSVKVWSIDQ 275 (479)
T ss_pred EEEEcCCCcEEEecCCC-----ceEEEecCcccchhhcccccccceeeeeeecCccceeee------ecCCceEEEehhH
Q ss_pred CeEEEcCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEeCCCCCEEECCCCCCCCcceEEEEECCEEEEEccCCC
Q psy17309 628 NQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNG 707 (824)
Q Consensus 628 ~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 707 (824)
....+.---...-...-.+.-.++...+||.+....+-+| |+..+-...+. .-+--+++.+++.=||.|+.++
T Consensus 276 ~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi----~eesqlifrg~---~~sidcv~~In~~HfvsGSdnG 348 (479)
T KOG0299|consen 276 LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKI----PEESQLIFRGG---EGSIDCVAFINDEHFVSGSDNG 348 (479)
T ss_pred hHHHHHHhCCccceeeechhcccceEEeccccceeEEEec----cccceeeeeCC---CCCeeeEEEecccceeeccCCc
Q ss_pred CceeeEEEEEECCCCc
Q psy17309 708 VTTIYHVECYDEKTDE 723 (824)
Q Consensus 708 ~~~~~~v~~yd~~~~~ 723 (824)
.|..++..++.
T Consensus 349 -----~IaLWs~~KKk 359 (479)
T KOG0299|consen 349 -----SIALWSLLKKK 359 (479)
T ss_pred -----eEEEeeecccC
No 254
>PRK02888 nitrous-oxide reductase; Validated
Probab=21.16 E-value=1.3e+03 Score=27.06 Aligned_cols=52 Identities=10% Similarity=0.066 Sum_probs=36.0
Q ss_pred ceEEEEeCCC---CCEEECCCCCCCCcceEEEEE--CCEEEEEccCCCCceeeEEEEEECCC
Q psy17309 665 CNGEKYNPVT---KTWSQVPDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYHVECYDEKT 721 (824)
Q Consensus 665 ~~v~~yd~~~---~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 721 (824)
+.|-+.|..+ ..+..+..+|.++.-|++.+- +.++|+.|+.+. ++-++|.++
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~-----tVSVIDv~k 352 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSP-----TVTVIDVRK 352 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCC-----cEEEEEChh
Confidence 5688888876 135555667888888887765 456777776544 577777766
No 255
>KOG4682|consensus
Probab=20.71 E-value=85 Score=33.61 Aligned_cols=34 Identities=6% Similarity=0.182 Sum_probs=31.3
Q ss_pred ecCHhhHHHHHHHHhhcChHhHHHHHHHHHhhcC
Q psy17309 271 HITEDNVASLLLATDFFCMSKAQDLCCDFIKRLT 304 (824)
Q Consensus 271 ~l~~~~v~~ll~~a~~~~i~~l~~~c~~~l~~~l 304 (824)
.|+++++...+++|..|+++.|++.|.++|..++
T Consensus 169 ~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl 202 (488)
T KOG4682|consen 169 TLSPKTACGYYEAACKYGLESVKKKCLEWLLNNL 202 (488)
T ss_pred hcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 5788999999999999999999999999998754
No 256
>KOG0272|consensus
Probab=20.70 E-value=1.1e+03 Score=25.69 Aligned_cols=131 Identities=14% Similarity=0.245 Sum_probs=65.0
Q ss_pred CCEEEEEeecCCCcccceEEEEECCCCceEE-eccCCCCcceEEEEE-ECCEEEEEecccCCCCCCeEEEEeCCCCcEEe
Q psy17309 508 GYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE-IAPMNFKRCYVSTAV-HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSL 585 (824)
Q Consensus 508 ~~~lyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 585 (824)
++.+...||.+.- -.++|..++.=.. +.. .-+.-+++.. -+|+..+.||.+ +.+-++|+...+=
T Consensus 314 DGSL~~tGGlD~~-----~RvWDlRtgr~im~L~g--H~k~I~~V~fsPNGy~lATgs~D-----nt~kVWDLR~r~~-- 379 (459)
T KOG0272|consen 314 DGSLAATGGLDSL-----GRVWDLRTGRCIMFLAG--HIKEILSVAFSPNGYHLATGSSD-----NTCKVWDLRMRSE-- 379 (459)
T ss_pred CCceeeccCccch-----hheeecccCcEEEEecc--cccceeeEeECCCceEEeecCCC-----CcEEEeeeccccc--
Confidence 8889999996532 2345666654221 111 1112233332 377888888754 3344455543321
Q ss_pred ecCCCcccCceEEEEE---CCEEEEEcccCCCCcCCceEEEeCCCCeEEEcCCCCCCCcceEEE--EECCEEEEEecCC
Q psy17309 586 IAPMNVERSDASATTL---QGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCI--AYHECIYVIGGFN 659 (824)
Q Consensus 586 ~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~ 659 (824)
+-.||.-+.-.+-+-+ .|+..+.+|++ +.+-.|. +..|+.+..|..--.-..++ ..++..++.++++
T Consensus 380 ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD-----~t~kiWs--~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D 451 (459)
T KOG0272|consen 380 LYTIPAHSNLVSQVKYSPQEGYFLVTASYD-----NTVKIWS--TRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFD 451 (459)
T ss_pred ceecccccchhhheEecccCCeEEEEcccC-----cceeeec--CCCcccchhhcCCccceEEEEeccCCceEEEeccC
Confidence 3334433332222222 57788888876 3455564 45577776654322111122 2245555555543
Done!