RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17309
(824 letters)
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional.
Length = 534
Score = 224 bits (572), Expect = 3e-64
Identities = 117/469 (24%), Positives = 203/469 (43%), Gaps = 32/469 (6%)
Query: 268 RKLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEW 327
K++IT +NV +L ++ + +LC ++I ++ NC I FS + CKKL
Sbjct: 69 GKINITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSA 128
Query: 328 TRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPENRK 387
YI N + + +++S+ EL +I+S D+LNV SE+ V E+II+W+ N+
Sbjct: 129 AYNYIRNNIELIYN-DPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNNKY 187
Query: 388 KHIVSLMKNIRLGLLETEFF------REKVKHHPYVQSTPECRPIIIETFKFLYDLELIA 441
K I ++K +R+ L E + ++K V + C II L
Sbjct: 188 KDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIVFNK-RCIKIIYSKKYNL------- 239
Query: 442 QIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAY 501
+ +P + I +++ Y +I+ + +
Sbjct: 240 --NKILPRSS------TFGSIIYIHITMSIFTYNYITNYS----PLSEINTIIDIHYVYC 287
Query: 502 HGTAVIGYNIYVIGGFDGNEY-YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYA 560
G+ V+ IY IGG + N NS ++ TK W ++ + + R V + IY
Sbjct: 288 FGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYV 347
Query: 561 MGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGG-FNGHNCLNS 619
+GG N+VE + E++W P+ R + + IY+ GG L +
Sbjct: 348 IGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKT 407
Query: 620 CEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGF---NGMSRMCNGEKYNPVTKT 676
E + N+W+ P+ G I + IYVIGG + + E YNPVT
Sbjct: 408 VECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK 467
Query: 677 WSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWY 725
W+++ + PR N ++ + ++ I+ +GG I +E YD+KT+ W
Sbjct: 468 WTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516
Score = 116 bits (291), Expect = 5e-27
Identities = 53/225 (23%), Positives = 89/225 (39%), Gaps = 6/225 (2%)
Query: 523 YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQR-RQNSVEKYNYTEN 581
+ + I +++ C+ S V +VIY +GG N NSV Y+
Sbjct: 263 TYNYITNYSPLSEINTIIDIHYVYCFGS-VVLNNVIYFIGGMNKNNLSVNSVVSYDTKTK 321
Query: 582 QWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRS 641
W+ + + R + T +IY+ GG LN+ E + P ++W P+ R
Sbjct: 322 SWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRY 381
Query: 642 GVSCIAYHECIYVIGG-FNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIF 700
+ + IYVIGG + E ++ T WS+ + D I+
Sbjct: 382 NPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIY 441
Query: 701 AIGGF---NGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVI 742
IGG + + VE Y+ T++W E + +N R S C+
Sbjct: 442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF 486
Score = 109 bits (273), Expect = 9e-25
Identities = 66/254 (25%), Positives = 103/254 (40%), Gaps = 15/254 (5%)
Query: 10 DHGKIETFKFLYDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSG-GSPTDFVETYDT 68
L I I V + +++ IGG + + V +YDT
Sbjct: 260 SIFTYNYITNYSPLSEINTIIDI-HYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDT 318
Query: 69 RADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPM 128
+ W K+ ++ PR G V IYVIGG + N+ + W+E P+
Sbjct: 319 KTKSWNKVPELIY--PRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPL 376
Query: 129 NFKRCYVSTAVHQDVIYAMGG-YNGQRRQNSVEKYNYTENQWSLIAPMN------CMIQN 181
F R ++IY +GG +VE ++ N+WS +P+ C I +
Sbjct: 377 IFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH 436
Query: 182 VTYNIYVIGGF---DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGG 238
IYVIGG D + YN +N VT W E++ +NF R S + + IY +GG
Sbjct: 437 DGK-IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGG 495
Query: 239 YNGQRRQNSVEKYN 252
+ N +E Y+
Sbjct: 496 DKYEYYINEIEVYD 509
Score = 99.8 bits (249), Expect = 8e-22
Identities = 55/197 (27%), Positives = 85/197 (43%), Gaps = 12/197 (6%)
Query: 446 EVPTPEIARPR------VPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPR 499
PE+ PR V + ++ IGG + VE++ +W ++ + PR
Sbjct: 323 WNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKW--REEPPLIFPR 380
Query: 500 AYHGTAVIGYNIYVIGG-FDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVI 558
+ IYVIGG +E + CF+ T W + +P+ H I
Sbjct: 381 YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKI 440
Query: 559 YAMGGY---NGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHN 615
Y +GG + + N VE YN N+W+ ++ +N R +AS KIY+ GG
Sbjct: 441 YVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEY 500
Query: 616 CLNSCEVYDPECNQWTL 632
+N EVYD + N WTL
Sbjct: 501 YINEIEVYDDKTNTWTL 517
Score = 92.9 bits (231), Expect = 1e-19
Identities = 54/202 (26%), Positives = 85/202 (42%), Gaps = 10/202 (4%)
Query: 66 YDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEY-YNSCRCFNAVTKVWKE 124
Y T +I+ + + G+ V+ IY IGG + N NS ++ TK W +
Sbjct: 266 YITNYSPLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK 325
Query: 125 IAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPM-----NCMI 179
+ + + R V + IY +GG N+VE + E++W P+ N +
Sbjct: 326 VPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCV 385
Query: 180 QNVTYNIYVIGG-FDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGG 238
NV IYVIGG +E + CF+ T W + +P+ H IY +GG
Sbjct: 386 VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGG 445
Query: 239 Y---NGQRRQNSVEKYNYTENQ 257
+ + N VE YN N+
Sbjct: 446 ISYIDNIKVYNIVESYNPVTNK 467
Score = 83.7 bits (207), Expect = 1e-16
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 23/199 (11%)
Query: 32 EVPTPEIARPR------VPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPR 85
PE+ PR V + ++ IGG + VE++ +W ++ + PR
Sbjct: 323 WNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKW--REEPPLIFPR 380
Query: 86 AYHGTAVIGYNIYVIGG-FDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVI 144
+ IYVIGG +E + CF+ T W + +P+ H I
Sbjct: 381 YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKI 440
Query: 145 YAMGGY---NGQRRQNSVEKYNYTENQWSLIAPMN--------CMIQNVTYNIYVIGGFD 193
Y +GG + + N VE YN N+W+ ++ +N C+ N IYV+GG
Sbjct: 441 YVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNK---IYVVGGDK 497
Query: 194 GNEYYNSCRCFNAVTKVWK 212
Y N ++ T W
Sbjct: 498 YEYYINEIEVYDDKTNTWT 516
Score = 71.0 bits (174), Expect = 1e-12
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 8/147 (5%)
Query: 46 EILFAIGGWS-GGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGF 103
+++ IGG S VE + ++W K P+ IYVIGG
Sbjct: 390 NLIYVIGGISKNDELLKTVECFSLNTNKWSKGS---PLPISHYGGCAIYHDGKIYVIGGI 446
Query: 104 ---DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVE 160
D + YN +N VT W E++ +NF R S + + IY +GG + N +E
Sbjct: 447 SYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIE 506
Query: 161 KYNYTENQWSLIAPMNCMIQNVTYNIY 187
Y+ N W+L +I ++ NI+
Sbjct: 507 VYDDKTNTWTLFCKFPKVIGSLEKNIF 533
Score = 66.3 bits (162), Expect = 3e-11
Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 6/174 (3%)
Query: 575 KYNYTENQWSLIAPMNVERSDAS--ATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTL 632
K + + +I + ++T IYI N Y P T+
Sbjct: 221 KIVFNKRCIKIIYSKKYNLNKILPRSSTFGSIIYIHIT-MSIFTYNYITNYSPLSEINTI 279
Query: 633 IEPMRHRRSGVSCIAYHECIYVIGGFNG-MSRMCNGEKYNPVTKTWSQVPDMYNPRSNFA 691
I+ H + + IY IGG N + + Y+ TK+W++VP++ PR N
Sbjct: 280 ID--IHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPG 337
Query: 692 IEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGL 745
+ V ++ I+ IGG ++ VE + +W E + R + L
Sbjct: 338 VTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNL 391
Score = 48.2 bits (115), Expect = 1e-05
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 5/117 (4%)
Query: 157 NSVEKYNYTENQWSLIA--PMNCMIQNVTYN--IYVIGGFDGNEY-YNSCRCFNAVTKVW 211
+ ++ + I +V N IY IGG + N NS ++ TK W
Sbjct: 264 YNYITNYSPLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSW 323
Query: 212 KEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFER 268
++ + + R V + IY +GG N+VE + E++ + E +F R
Sbjct: 324 NKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR 380
>gnl|CDD|149006 pfam07707, BACK, BTB And C-terminal Kelch. This domain is found
associated with pfam00651 and pfam01344. The BACK domain
is found juxtaposed to the BTB domain; they are
separated by as little as two residues. This family
appears to be closely related to the BTB domain (Finn
RD, personal observation).
Length = 101
Score = 123 bits (311), Expect = 2e-33
Identities = 45/101 (44%), Positives = 73/101 (72%), Gaps = 1/101 (0%)
Query: 309 CFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSE 368
C GI F+ + C++L E ++IL+NF++V+ +SEE + +S+++L E++SSDELNV SE
Sbjct: 1 CLGIYRFADTYGCEELAEVALRFILKNFLEVS-KSEEFLELSKEQLLELLSSDELNVPSE 59
Query: 369 ETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFRE 409
E V+E +I+W+ +D ENRKKH+ L+ +RL LL E+ +
Sbjct: 60 EEVFEAVIKWVKHDVENRKKHLPELLSAVRLPLLSPEYLLD 100
>gnl|CDD|197943 smart00875, BACK, BTB And C-terminal Kelch. The BACK domain is
found juxtaposed to the BTB domain; they are separated
by as little as two residues.
Length = 101
Score = 115 bits (290), Expect = 1e-30
Identities = 40/104 (38%), Positives = 68/104 (65%), Gaps = 5/104 (4%)
Query: 309 CFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVF--ISEQELEEIISSDELNVK 366
C GI F+ H ++L E ++IL+NF +V+ E F + ++L E++SSD+LNV
Sbjct: 1 CLGIRRFADAHGLEELAEKALRFILQNFSEVSSSEE---FLELPLEQLLELLSSDDLNVS 57
Query: 367 SEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREK 410
SEE V+E ++RW+ +DPE R++H+ L++++RL LL ++ E
Sbjct: 58 SEEEVFEAVLRWVKHDPEKRREHLPELLEHVRLPLLSPDYLLEV 101
>gnl|CDD|165153 PHA02790, PHA02790, Kelch-like protein; Provisional.
Length = 480
Score = 99.3 bits (247), Expect = 8e-22
Identities = 106/491 (21%), Positives = 198/491 (40%), Gaps = 84/491 (17%)
Query: 250 KYNYTENQDKIEEKKL--------------FERKLHITEDNVASLLLATDFFCMSKAQDL 295
+ YT+N+D + L + K++I NV +LL A+ +
Sbjct: 52 RQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEFIIYT 111
Query: 296 CCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELE 355
C +FI R C + ++ L T+ +I ++F+++ E + I ++
Sbjct: 112 CINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLEL--EDDIIDNFDYLSMK 169
Query: 356 EIISSDELNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHP 415
I+ SDELNV E+ V + +I+W NR +++ L+KN+ + + +
Sbjct: 170 LILESDELNVPDEDYVVDFVIKWY-MKRRNRLGNLLLLIKNV----IRSNYLS------- 217
Query: 416 YVQSTPECRPIIIETFKFLYDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTD 475
P I K++ D I D +PR ++
Sbjct: 218 ---------PRGINNVKWILDCTKIFHCD--------KQPRKSYKY-------------P 247
Query: 476 FVETYDTRADRWVKIDQVDPMGPRAYH--GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVT 533
F+E Y D+ + I +H + +G +Y+IGG+ NE +N+ N ++
Sbjct: 248 FIE-YPMNMDQIIDI----------FHMCTSTHVGEVVYLIGGWMNNEIHNNAIAVNYIS 296
Query: 534 KVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVER 593
W I PMN R Y S + +Y +GG SVE++ + + W + + R
Sbjct: 297 NNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPSLLKPR 353
Query: 594 SDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIY 653
+ + ++ IY+ GG + + + E P +QW + + + ++
Sbjct: 354 CNPAVASINNVIYVIGGHSETD--TTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLF 411
Query: 654 VIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYH 713
++G N E Y + TW+ + D PR N + ++D+ + IGGF + I
Sbjct: 412 LVGR--------NAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDT 463
Query: 714 VECYDEKTDEW 724
+E Y+ +T W
Sbjct: 464 IEVYNNRTYSW 474
Score = 55.4 bits (133), Expect = 7e-08
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 93 IGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNG 152
+G +Y+IGG+ NE +N+ N ++ W I PMN R Y S + +Y +GG
Sbjct: 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN 329
Query: 153 QRRQNSVEKYNYTENQW----SLIAPM-NCMIQNVTYNIYVIGG 191
SVE++ + + W SL+ P N + ++ IYVIGG
Sbjct: 330 ---PTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGG 370
Score = 43.5 bits (102), Expect = 4e-04
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 177 CMIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAM 236
C +V +Y+IGG+ NE +N+ N ++ W I PMN R Y S + +Y +
Sbjct: 265 CTSTHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVV 324
Query: 237 GG 238
GG
Sbjct: 325 GG 326
Score = 36.9 bits (85), Expect = 0.044
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 5/106 (4%)
Query: 46 EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDG 105
E+++ IGGW + + ++ W+ I ++ PR Y +YV+GG
Sbjct: 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMN--SPRLYASGVPANNKLYVVGGLPN 329
Query: 106 NEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN 151
R F+ W + + RC + A +VIY +GG++
Sbjct: 330 PTSVE--RWFHGDAA-WVNMPSLLKPRCNPAVASINNVIYVIGGHS 372
>gnl|CDD|128874 smart00612, Kelch, Kelch domain.
Length = 47
Score = 68.7 bits (169), Expect = 9e-15
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 651 CIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDD 697
IYV+GGF+G R+ + E Y+P T W+ +P M PRS + VI+
Sbjct: 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
Score = 60.3 bits (147), Expect = 9e-12
Identities = 22/47 (46%), Positives = 27/47 (57%)
Query: 604 KIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHE 650
KIY+ GGF+G L S EVYDPE N+WT + M RSG +
Sbjct: 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
Score = 59.1 bits (144), Expect = 2e-11
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 557 VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQG 603
IY +GG++G +R SVE Y+ N+W+ + M RS + G
Sbjct: 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
Score = 58.0 bits (141), Expect = 5e-11
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 97 IYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD 142
IYV+GGFDG + S ++ T W + M R AV
Sbjct: 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
Score = 58.0 bits (141), Expect = 5e-11
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 186 IYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD 231
IYV+GGFDG + S ++ T W + M R AV
Sbjct: 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
Score = 58.0 bits (141), Expect = 5e-11
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 511 IYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD 556
IYV+GGFDG + S ++ T W + M R AV
Sbjct: 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
Score = 55.6 bits (135), Expect = 3e-10
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 699 IFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMG 744
I+ +GGF+G + VE YD +T++W M RS VI G
Sbjct: 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
Score = 50.6 bits (122), Expect = 2e-08
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 143 VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNCM 178
IY +GG++G +R SVE Y+ N+W+ + M
Sbjct: 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTP 36
Score = 41.0 bits (97), Expect = 4e-05
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 48 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPM-GPRAYHGTAVIG 94
++ +GG+ GG VE YD ++W + M PR+ HG AVI
Sbjct: 2 IYVVGGFDGGQRLKSVEVYDPETNKWT---PLPSMPTPRSGHGVAVIN 46
Score = 41.0 bits (97), Expect = 4e-05
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 462 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPM-GPRAYHGTAVIG 508
++ +GG+ GG VE YD ++W + M PR+ HG AVI
Sbjct: 2 IYVVGGFDGGQRLKSVEVYDPETNKWT---PLPSMPTPRSGHGVAVIN 46
Score = 38.7 bits (91), Expect = 4e-04
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 232 VIYAMGGYNGQRRQNSVEKYNYTENQ 257
IY +GG++G +R SVE Y+ N+
Sbjct: 1 KIYVVGGFDGGQRLKSVEVYDPETNK 26
>gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein.
Length = 470
Score = 74.6 bits (183), Expect = 7e-14
Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 20/165 (12%)
Query: 507 IGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN---FKRCYVSTAVHQDVIYAMGG 563
IG +YV GG D + YN F+ T WK + P+ R + S A ++ +Y GG
Sbjct: 227 IGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGG 286
Query: 564 YNGQRRQNSVEKYNYTENQW---SLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSC 620
+ R +++ YN + +W S R A +QGK+++ GFNG C
Sbjct: 287 VSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNG------C 340
Query: 621 EV-----YDPECNQWTLIEPMRHR---RSGVSCIAYHECIYVIGG 657
EV YDP ++WT +E R RS + A + I + GG
Sbjct: 341 EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGG 385
Score = 68.1 bits (166), Expect = 8e-12
Identities = 62/253 (24%), Positives = 95/253 (37%), Gaps = 63/253 (24%)
Query: 486 RWVKIDQV-DPMGPRAYHGTAVIGYNIYVIGG-FDGNEYYNS-CRCFNAVTKVWKEIAPM 542
+W+K++Q + G R HG A +G IY GG F N+ + F+ T+ W I+P
Sbjct: 152 KWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTW-SISPA 210
Query: 543 N--------FKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERS 594
VS +Y GG + R+ N ++ T N+W L+ P
Sbjct: 211 TGDVPHLSCLGVRMVSIG---STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTP------ 261
Query: 595 DASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYV 654
+E RS S A E +YV
Sbjct: 262 --------------------------------------VEEGPTPRSFHSMAADEENVYV 283
Query: 655 IGGFNGMSRMCNGEKYNPVTKTW---SQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTI 711
GG + +R+ + YN V K W S D ++ R +EV+ ++ + GFNG +
Sbjct: 284 FGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EV 342
Query: 712 YHVECYDEKTDEW 724
V YD D+W
Sbjct: 343 DDVHYYDPVQDKW 355
Score = 58.4 bits (141), Expect = 8e-09
Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 16/156 (10%)
Query: 93 IGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN---FKRCYVSTAVHQDVIYAMGG 149
IG +YV GG D + YN F+ T WK + P+ R + S A ++ +Y GG
Sbjct: 227 IGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGG 286
Query: 150 YNGQRRQNSVEKYNYTENQW--------SLIAPMNCMIQNVTYNIYVIGGFDGNEYYNSC 201
+ R +++ YN + +W S ++ V ++V+ GF+G E +
Sbjct: 287 VSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE-VDDV 345
Query: 202 RCFNAVTKVWKEIAPMNFKRC----YVSTAVHQDVI 233
++ V W ++ + + S AV + ++
Sbjct: 346 HYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIV 381
Score = 54.2 bits (130), Expect = 2e-07
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 25/160 (15%)
Query: 72 RWVKIDQV-DPMGPRAYHGTAVIGYNIYVIGG-FDGNEYYNS-CRCFNAVTKVWKEIAPM 128
+W+K++Q + G R HG A +G IY GG F N+ + F+ T+ W I+P
Sbjct: 152 KWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTW-SISPA 210
Query: 129 N--------FKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPM----- 175
VS +Y GG + R+ N ++ T N+W L+ P+
Sbjct: 211 TGDVPHLSCLGVRMVSIG---STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPT 267
Query: 176 ----NCMIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKVW 211
+ M + N+YV GG + +N V K W
Sbjct: 268 PRSFHSMAAD-EENVYVFGGVSATARLKTLDSYNIVDKKW 306
Score = 40.3 bits (94), Expect = 0.004
Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 13/168 (7%)
Query: 14 IETFKFLYDLEL----IAQIDGEVPTPEIARPRVPH--EILFAIGGWSGGSPTDFVETYD 67
I+ +++DLE I+ G+VP R+ L+ GG + ++D
Sbjct: 191 IDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFD 250
Query: 68 TRADRWVKIDQVD--PMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEI 125
T + W + V+ P PR++H A N+YV GG + +N V K W
Sbjct: 251 TTTNEWKLLTPVEEGPT-PRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHC 309
Query: 126 A-PMN--FKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWS 170
+ P + R V Q ++ + G+NG + V Y+ +++W+
Sbjct: 310 STPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDDVHYYDPVQDKWT 356
>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that the
Drosophila ring canal kelch protein is related to
Galactose Oxidase, for which a structure has been
solved. The kelch motif forms a beta sheet. Several of
these sheets associate to form a beta propeller
structure as found in pfam00064, pfam00400 and
pfam00415.
Length = 46
Score = 61.9 bits (151), Expect = 2e-12
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 593 RSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMR 637
RS A L GKIY+ GG++G L+S EVYDPE N W+ + M
Sbjct: 2 RSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
Score = 59.6 bits (145), Expect = 1e-11
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 131 KRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMN 176
R V IY +GGY+G + +SVE Y+ N WS + M
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
Score = 59.6 bits (145), Expect = 1e-11
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 545 KRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMN 590
R V IY +GGY+G + +SVE Y+ N WS + M
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
Score = 59.6 bits (145), Expect = 1e-11
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 639 RRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDM 683
RSG + IYVIGG++G + + E Y+P T TWS++P M
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSM 45
Score = 56.9 bits (138), Expect = 1e-10
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 84 PRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN 129
PR+ G V+G IYVIGG+DG + +S ++ T W ++ M
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
Score = 56.9 bits (138), Expect = 1e-10
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 498 PRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN 543
PR+ G V+G IYVIGG+DG + +S ++ T W ++ M
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
Score = 56.1 bits (136), Expect = 2e-10
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 686 PRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMN 731
PRS + V+ I+ IGG++G ++ VE YD +T+ W + M
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
Score = 48.0 bits (115), Expect = 2e-07
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 220 KRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
R V IY +GGY+G + +SVE Y+ N
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNT 38
Score = 43.8 bits (104), Expect = 5e-06
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 186 IYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN 218
IYVIGG+DG + +S ++ T W ++ M
Sbjct: 14 IYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
Score = 37.6 bits (88), Expect = 7e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 43 VPHEILFAIGGWSGGSPTDFVETYDTRADRWVKI 76
V ++ IGG+ GG VE YD + W K+
Sbjct: 9 VLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKL 42
Score = 37.6 bits (88), Expect = 7e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 457 VPHEILFAIGGWSGGSPTDFVETYDTRADRWVKI 490
V ++ IGG+ GG VE YD + W K+
Sbjct: 9 VLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKL 42
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional.
Length = 557
Score = 63.1 bits (153), Expect = 3e-10
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 502 HGTAVIGYNIYVIGGFD-GNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYA 560
+ +A++ I + GG++ N N N K+ E+ PM RC S AV D IYA
Sbjct: 297 YASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYA 356
Query: 561 MGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGH 614
+GG NG + ++E Y +++W ++ M + S L IYI GG H
Sbjct: 357 IGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEH 410
Score = 59.3 bits (143), Expect = 6e-09
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Query: 614 HNCLNSC-EVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNG-EKYN 671
+N N C VY+ ++++I + + + I + GG+N + N K N
Sbjct: 267 YNVCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKIN 326
Query: 672 PVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMN 731
K ++P M R F++ VIDD I+AIGG NG +ECY D+W DM
Sbjct: 327 IENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMP 386
Query: 732 IYRSALSACVI 742
I S+ CV+
Sbjct: 387 IALSSYGMCVL 397
Score = 58.5 bits (141), Expect = 9e-09
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 88 HGTAVIGYNIYVIGGFD-GNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYA 146
+ +A++ I + GG++ N N N K+ E+ PM RC S AV D IYA
Sbjct: 297 YASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYA 356
Query: 147 MGGYNGQRRQNSVEKYNYTENQWSLIAPMNCMIQN-----VTYNIYVIGGFDGNEYYNSC 201
+GG NG + ++E Y +++W ++ M + + + IY+IGG + Y S
Sbjct: 357 IGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSV 416
Query: 202 RCFNAV 207
N++
Sbjct: 417 HHMNSI 422
Score = 51.9 bits (124), Expect = 9e-07
Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 8/154 (5%)
Query: 576 YNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHN-CLNSCEVYDPECNQWTLIE 634
YN ++S+I+ + + ++ + +I I GG+N +N LN +VY +E
Sbjct: 277 YNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLN--KVYKINIENKIHVE 334
Query: 635 --PMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAI 692
PM R S + IY IGG NG + E Y W +PDM S++ +
Sbjct: 335 LPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGM 394
Query: 693 EVIDDMIFAIGG---FNGVTTIYHVECYDEKTDE 723
V+D I+ IGG T+++H+ D + D
Sbjct: 395 CVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428
Score = 47.3 bits (112), Expect = 3e-05
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 162 YNYTENQWSLIAPMNCMIQN-----VTYNIYVIGGFD-GNEYYNSCRCFNAVTKVWKEIA 215
YN ++S+I+ + I N V I + GG++ N N N K+ E+
Sbjct: 277 YNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELP 336
Query: 216 PMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKI 260
PM RC S AV D IYA+GG NG + ++E Y +++ K+
Sbjct: 337 PMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381
Score = 44.2 bits (104), Expect = 3e-04
Identities = 34/111 (30%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
Query: 548 YVSTAVHQDVIYAMGGYN-GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIY 606
Y S V ++I A GGYN N V K N + PM R S + IY
Sbjct: 297 YASAIVDNEIIIA-GGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIY 355
Query: 607 ITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGG 657
GG NG N + E Y ++W ++ M S + IY+IGG
Sbjct: 356 AIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGG 406
Score = 35.8 bits (82), Expect = 0.11
Identities = 48/240 (20%), Positives = 85/240 (35%), Gaps = 27/240 (11%)
Query: 43 VPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGG 102
V +EI+ A GG++ +P+ + Y + + ++ + R AVI IY IGG
Sbjct: 302 VDNEIIIA-GGYNFNNPS-LNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGG 359
Query: 103 FDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGG------YNGQRRQ 156
+G + C+ WK + M V IY +GG Y
Sbjct: 360 QNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHM 419
Query: 157 NSVE------------KYNYTENQWSLI-----APMNCMIQNVTYNIYVIGGFDGNEYYN 199
NS++ +Y+ N W + + + + +IYV+ +
Sbjct: 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVK 479
Query: 200 SC--RCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
+C R W+ I + + T +H + I + Y Q++ Y Y N
Sbjct: 480 TCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNH 539
Score = 33.8 bits (77), Expect = 0.36
Identities = 50/244 (20%), Positives = 87/244 (35%), Gaps = 25/244 (10%)
Query: 457 VPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGG 516
V +EI+ A GG++ +P+ + Y + + ++ + R AVI IY IGG
Sbjct: 302 VDNEIIIA-GGYNFNNPS-LNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGG 359
Query: 517 FDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGG------YNGQRRQ 570
+G + C+ WK + M V IY +GG Y
Sbjct: 360 QNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHM 419
Query: 571 NSVE------------KYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLN 618
NS++ +Y+ N W + + + IY+ +
Sbjct: 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVK 479
Query: 619 SCEV-YDPEC-NQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKT 676
+C Y+ N W LI R S + I + I ++ + S M + +N T
Sbjct: 480 TCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYE--SYMLQ-DTFNVYTYE 536
Query: 677 WSQV 680
W+ +
Sbjct: 537 WNHI 540
>gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein.
Length = 341
Score = 60.4 bits (146), Expect = 1e-09
Identities = 62/253 (24%), Positives = 107/253 (42%), Gaps = 37/253 (14%)
Query: 487 WVKIDQVDPMGP--RAYHGTAVIGYNIYVIGG-FDGNEYYNS-CRCFNAVTKVWKEIAPM 542
W+K++Q GP R HG AV+G +Y GG NE+ + F+ T W IAP
Sbjct: 9 WIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTW-SIAPA 67
Query: 543 NFKRCYVSTAVHQDV-----IYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVE----- 592
N +S + V +Y GG + +R + Y+ +N+W+ + ++ E
Sbjct: 68 NGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEA 127
Query: 593 RSDASATTLQGKIYITGGFNGHNCLN------SCEVYDPECNQWT-LIEPMRH--RRSGV 643
R+ S + + +Y+ GG + + + E Y+ +W L +P + +R G
Sbjct: 128 RTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGA 187
Query: 644 SCIAYHECIYVIGGFNGMSRMCNGEK---------YNPVTKTWSQVPDM---YNPRSNFA 691
I+V+ GF S + G+ ++P + W++V + RS FA
Sbjct: 188 GFAVVQGKIWVVYGF-ATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFA 246
Query: 692 IEVIDDMIFAIGG 704
V+ I GG
Sbjct: 247 HAVVGKYIIIFGG 259
Score = 43.8 bits (103), Expect = 2e-04
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 73 WVKIDQVDPMGP--RAYHGTAVIGYNIYVIGG-FDGNEYYNS-CRCFNAVTKVWKEIAPM 128
W+K++Q GP R HG AV+G +Y GG NE+ + F+ T W IAP
Sbjct: 9 WIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTW-SIAPA 67
Query: 129 NFKRCYVSTAVHQDV-----IYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMN 176
N +S + V +Y GG + +R + Y+ +N+W+ + ++
Sbjct: 68 NGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLD 120
Score = 40.4 bits (94), Expect = 0.003
Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 93 IGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFK-----RCYVSTAVHQDVIYAM 147
+G +Y+ GG D ++ ++ V W + ++ + R + S A ++ +Y
Sbjct: 84 VGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVF 143
Query: 148 GG------YNGQRRQNSVEKYNYTENQW 169
GG R ++E YN + +W
Sbjct: 144 GGVSKGGLMKTPERFRTIEAYNIADGKW 171
>gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family
protein. Members of this protein family show
essentially full-length homology, cyclically permuted,
to YjhT from Escherichia coli. YjhT was shown to act as
a mutarotase for sialic acid, and by this ability to be
able to act as a virulence factor. Members of the YjhT
family (TIGR03547) and this cyclically-permuted family
have multiple repeats of the beta-propeller-forming
Kelch repeat.
Length = 323
Score = 54.8 bits (132), Expect = 8e-08
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 14/184 (7%)
Query: 535 VWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSL----IAPMN 590
W + + + Y ++ ++ IY +GG N +SV + E++ +L + +
Sbjct: 52 KWVKAGQLPYAAAYGASISTENGIYYIGGSNSSESFSSVYRITLDESKEALIIETLPSLP 111
Query: 591 VERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIE--PMRHRRSGVSCIAY 648
+ SAT GK+Y+ GG N ++ E +W + P R V C+
Sbjct: 112 FAMDNGSATYKDGKLYVGGGNANGKPSNKFYCFNLETQEWEELPDFPGAPRVQPV-CVKL 170
Query: 649 HECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMY---NPRS---NFAIEVIDDMIFAI 702
+YV GG + ++ +G KY+P T TW +V D P S +I + + ++ I
Sbjct: 171 QNELYVFGGGDNIAYT-DGYKYSPKTGTWEKVADPLSDGEPISLLGAASIAINESLLLCI 229
Query: 703 GGFN 706
GGFN
Sbjct: 230 GGFN 233
Score = 33.2 bits (76), Expect = 0.55
Identities = 35/171 (20%), Positives = 58/171 (33%), Gaps = 23/171 (13%)
Query: 457 VPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAY---HGTAV-IGYNIY 512
+ I + G S S + Y D + ++ + + +G+A +Y
Sbjct: 71 TENGIYYIGGSNSSESFSS---VYRITLDESKEALIIETLPSLPFAMDNGSATYKDGKLY 127
Query: 513 VIGGFDGNEYYNSCRCFNAVTKVWKEIA--PMNFKRCYVSTAVHQDVIYAMGGYNGQRRQ 570
V GG + N CFN T+ W+E+ P + V + ++ GG N
Sbjct: 128 VGGGNANGKPSNKFYCFNLETQEWEELPDFPGAPRVQPVCVKLQNELYVFGGGDNIAYTD 187
Query: 571 NSVEKYNYTENQWSLIAPMNVERSDASATTLQG---------KIYITGGFN 612
KY+ W + SD +L G + GGFN
Sbjct: 188 --GYKYSPKTGTWE---KVADPLSDGEPISLLGAASIAINESLLLCIGGFN 233
Score = 31.3 bits (71), Expect = 1.9
Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 11/131 (8%)
Query: 121 VWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSL----IAPMN 176
W + + + Y ++ ++ IY +GG N +SV + E++ +L + +
Sbjct: 52 KWVKAGQLPYAAAYGASISTENGIYYIGGSNSSESFSSVYRITLDESKEALIIETLPSLP 111
Query: 177 CMIQN-----VTYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIA--PMNFKRCYVSTAVH 229
+ N +YV GG + N CFN T+ W+E+ P + V +
Sbjct: 112 FAMDNGSATYKDGKLYVGGGNANGKPSNKFYCFNLETQEWEELPDFPGAPRVQPVCVKLQ 171
Query: 230 QDVIYAMGGYN 240
++ GG N
Sbjct: 172 NELYVFGGGDN 182
Score = 31.3 bits (71), Expect = 1.9
Identities = 42/246 (17%), Positives = 78/246 (31%), Gaps = 55/246 (22%)
Query: 43 VPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAY---HGTAV-IGYNIY 98
+ I + G S S + Y D + ++ + + +G+A +Y
Sbjct: 71 TENGIYYIGGSNSSESFSS---VYRITLDESKEALIIETLPSLPFAMDNGSATYKDGKLY 127
Query: 99 VIGGFDGNEYYNSCRCFNAVTKVWKEIA--PMNFKRCYVSTAVHQDVIYAMGGYNGQRRQ 156
V GG + N CFN T+ W+E+ P + V + ++ GG N
Sbjct: 128 VGGGNANGKPSNKFYCFNLETQEWEELPDFPGAPRVQPVCVKLQNELYVFGGGDNIAYTD 187
Query: 157 NSVEKYNYTENQWSLIA-------PMN----CMIQNVTYNIYVIGGFD------------ 193
KY+ W +A P++ I + IGGF+
Sbjct: 188 --GYKYSPKTGTWEKVADPLSDGEPISLLGAASIAINESLLLCIGGFNYDVFNDAVIRLA 245
Query: 194 -----------------GNEYYN---SCRCFNAVTKVWKEIAPMNF-KRCYVSTAVHQDV 232
++Y ++ + WK I F RC + + +
Sbjct: 246 TMKDESLKSYAAEYFLHPPDWYRWNDKVLIYDVRSGKWKSIGNSPFVARCGAALLLTGNN 305
Query: 233 IYAMGG 238
++ + G
Sbjct: 306 LFVING 311
Score = 29.3 bits (66), Expect = 8.7
Identities = 37/175 (21%), Positives = 61/175 (34%), Gaps = 17/175 (9%)
Query: 55 SGGSPTDFVETYDTRAD----RWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYN 110
GG + Y + +WVK Q+ AY + IY IGG + +E ++
Sbjct: 31 EGGKKKYYKGIYTLDDEDSNLKWVKAGQLPY--AAAYGASISTENGIYYIGGSNSSESFS 88
Query: 111 SCRCFNAVTKV----WKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTE 166
S + + + F S +Y GG + N +N
Sbjct: 89 SVYRITLDESKEALIIETLPSLPFAMDNGSATYKDGKLYVGGGNANGKPSNKFYCFNLET 148
Query: 167 NQWSLIA--PMNCMIQNVTY----NIYVIGGFDGNEYYNSCRCFNAVTKVWKEIA 215
+W + P +Q V +YV GG D N Y ++ T W+++A
Sbjct: 149 QEWEELPDFPGAPRVQPVCVKLQNELYVFGGGD-NIAYTDGYKYSPKTGTWEKVA 202
>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif.
Length = 50
Score = 48.2 bits (115), Expect = 2e-07
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 84 PRAYHGTAVIGYNIYVIGGF-DGNEYYNSCRCFNAVTKVWKEIAPMNFKR 132
PR H +G IYV GG+ +G++ N ++ T W+++ P+ R
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
Score = 48.2 bits (115), Expect = 2e-07
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 498 PRAYHGTAVIGYNIYVIGGF-DGNEYYNSCRCFNAVTKVWKEIAPMNFKR 546
PR H +G IYV GG+ +G++ N ++ T W+++ P+ R
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
Score = 47.8 bits (114), Expect = 2e-07
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 640 RSGVSCIAYHECIYVIGGFNGMSRMCN-GEKYNPVTKTWSQVPDMYNPR 687
R+G S ++ IYV GG++ S+ N Y+P T +W ++P + PR
Sbjct: 2 RTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
Score = 45.1 bits (107), Expect = 2e-06
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 593 RSDASATTLQGKIYITGGF-NGHNCLNSCEVYDPECNQWTLIEPMRHRR 640
R+ SA ++ GKIY+ GG+ NG N VYDPE W + P+ R
Sbjct: 2 RTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
Score = 41.3 bits (97), Expect = 4e-05
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 546 RCYVSTAVHQDVIYAMGGY-NGQRRQNSVEKYNYTENQWSLIAPMNVER 593
R S IY GGY NG + N V Y+ W + P+ R
Sbjct: 2 RTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
Score = 40.1 bits (94), Expect = 1e-04
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 132 RCYVSTAVHQDVIYAMGGY-NGQRRQNSVEKYNYTENQWSLIAPMNC 177
R S IY GGY NG + N V Y+ W + P+
Sbjct: 2 RTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPT 48
Score = 38.2 bits (89), Expect = 5e-04
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 175 MNCMIQNVTYN--IYVIGGF-DGNEYYNSCRCFNAVTKVWKEIAPMNFKR 221
V+ IYV GG+ +G++ N ++ T W+++ P+ R
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
Score = 37.4 bits (87), Expect = 0.001
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 686 PRSNFAIEVIDDMIFAIGGFNGVTTIYH-VECYDEKTDEWYEATDMNIYR 734
PR+ + + I+ GG++ + + V YD +T W + + R
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
Score = 32.0 bits (73), Expect = 0.071
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 221 RCYVSTAVHQDVIYAMGGY-NGQRRQNSVEKYN 252
R S IY GGY NG + N V Y+
Sbjct: 2 RTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYD 34
>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain.
Length = 48
Score = 40.4 bits (95), Expect = 9e-05
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 603 GKIYITGGFNGHN-CLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAY 648
GKIY+ GG LN VYD + N W + + R+G +
Sbjct: 2 GKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48
Score = 38.4 bits (90), Expect = 4e-04
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 652 IYVIGGFNGMSRMCNG-EKYNPVTKTWSQVPDMYNPRSNFAI 692
IYV GG N Y+ T TW ++ D+ PR+ A
Sbjct: 4 IYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAA 45
Score = 37.3 bits (87), Expect = 0.001
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 96 NIYVIGGFDG-NEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH 140
IYV GG N ++ T W+++ + R + V
Sbjct: 3 KIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48
Score = 37.3 bits (87), Expect = 0.001
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 185 NIYVIGGFDG-NEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH 229
IYV GG N ++ T W+++ + R + V
Sbjct: 3 KIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48
Score = 37.3 bits (87), Expect = 0.001
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 510 NIYVIGGFDG-NEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH 554
IYV GG N ++ T W+++ + R + V
Sbjct: 3 KIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48
Score = 30.3 bits (69), Expect = 0.27
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 696 DDMIFAIGGFNGVTTIYH-VECYDEKTDEWYEATDMNIYRSALSACVI 742
I+ GG T + + YD T+ W + D+ R+ +A VI
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48
>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain.
Length = 49
Score = 40.3 bits (95), Expect = 9e-05
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 593 RSDASATTLQ-GKIYITGGFNG-HNCLNSCEVYDPECNQWTLIEPM 636
R+ ++T++ G++Y+ GG N + L+ V+D N WT + +
Sbjct: 2 RAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSL 47
Score = 39.6 bits (93), Expect = 2e-04
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 84 PRAYHGTAVIGYN-IYVIGGFDGN-EYYNSCRCFNAVTKVWKEIAPM 128
PRAYH + IG +Y+ GG + + + F+ T W + +
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSL 47
Score = 39.6 bits (93), Expect = 2e-04
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 498 PRAYHGTAVIGYN-IYVIGGFDGN-EYYNSCRCFNAVTKVWKEIAPM 542
PRAYH + IG +Y+ GG + + + F+ T W + +
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSL 47
Score = 32.2 bits (74), Expect = 0.072
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 133 CYVSTAVHQDVIYAMGGYNGQ-RRQNSVEKYNYTENQWSLIAPMNC 177
+ ST++ +Y GG N + V ++ + N W+ + +
Sbjct: 4 YHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSLPS 49
Score = 31.8 bits (73), Expect = 0.081
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 177 CMIQNVTYNIYVIGGFDGN-EYYNSCRCFNAVTKVWKEIAPM 217
+Y+ GG + + + F+ T W + +
Sbjct: 6 TSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSL 47
Score = 31.8 bits (73), Expect = 0.090
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 547 CYVSTAVHQDVIYAMGGYNGQ-RRQNSVEKYNYTENQWSLIAPM 589
+ ST++ +Y GG N + V ++ + N W+ + +
Sbjct: 4 YHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSL 47
Score = 31.5 bits (72), Expect = 0.13
Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 652 IYVIGGFNG-MSRMCNGEKYNPVTKTWSQVPDM 683
+Y+ GG N S + + ++ T TW+++P +
Sbjct: 15 LYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSL 47
>gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase;
Provisional.
Length = 376
Score = 41.5 bits (98), Expect = 0.001
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
Query: 577 NYTENQWSLIAPM-NVERSDASATTLQGKIYITGGFNGHN------CLNSCEVYDPECNQ 629
N W+ IA R A A + GK+Y+ GG N + YDP+ N
Sbjct: 58 NAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS 117
Query: 630 WTLIEPMRHRRS--GVSCIAYHEC-IYVIGGFN 659
W + R G ++ H Y+ GG N
Sbjct: 118 WQKL-DTRSPVGLAGHVAVSLHNGKAYITGGVN 149
Score = 41.2 bits (97), Expect = 0.002
Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 22/127 (17%)
Query: 503 GT-AVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNF---KRCYVSTAVHQDVI 558
GT A+ +YV G G +Y NA +K W +IA F R A +
Sbjct: 32 GTGAIDNNTVYVGLGSAGTSWYK--LDLNAPSKGWTKIA--AFPGGPREQAVAAFIDGKL 87
Query: 559 YAMGGYNGQ-------RRQNSVEKYNYTENQWS---LIAPMNVERSDASATTLQG-KIYI 607
Y GG G+ + + V KY+ N W +P+ + + A +L K YI
Sbjct: 88 YVFGG-IGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGL--AGHVAVSLHNGKAYI 144
Query: 608 TGGFNGH 614
TGG N +
Sbjct: 145 TGGVNKN 151
Score = 36.9 bits (86), Expect = 0.035
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 72 RWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGF-----DG-NEYYNSCRCFNAVTKVWKEI 125
W KI P GPR A I +YV GG +G + ++ ++ T W+++
Sbjct: 63 GWTKIAAF-PGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKL 121
Query: 126 ---APMNFKRCYVSTAVHQDVIYAMGGYN 151
+P+ +V+ ++H Y GG N
Sbjct: 122 DTRSPVGLA-GHVAVSLHNGKAYITGGVN 149
Score = 36.9 bits (86), Expect = 0.035
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 486 RWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGF-----DG-NEYYNSCRCFNAVTKVWKEI 539
W KI P GPR A I +YV GG +G + ++ ++ T W+++
Sbjct: 63 GWTKIAAF-PGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKL 121
Query: 540 ---APMNFKRCYVSTAVHQDVIYAMGGYN 565
+P+ +V+ ++H Y GG N
Sbjct: 122 DTRSPVGLA-GHVAVSLHNGKAYITGGVN 149
Score = 32.3 bits (74), Expect = 1.0
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 48 LFAIGGW----SGGSPTDF--VETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIG 101
L+ GG S GSP F V YD + + W K+D P+G + ++ Y+ G
Sbjct: 87 LYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITG 146
Query: 102 G-----FDG 105
G FDG
Sbjct: 147 GVNKNIFDG 155
Score = 32.3 bits (74), Expect = 1.0
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 462 LFAIGGW----SGGSPTDF--VETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIG 515
L+ GG S GSP F V YD + + W K+D P+G + ++ Y+ G
Sbjct: 87 LYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITG 146
Query: 516 G-----FDG 519
G FDG
Sbjct: 147 GVNKNIFDG 155
Score = 30.8 bits (70), Expect = 3.4
Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 30/130 (23%)
Query: 89 GT-AVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNF---KRCYVSTAVHQDVI 144
GT A+ +YV G G +Y NA +K W +IA F R A +
Sbjct: 32 GTGAIDNNTVYVGLGSAGTSWYK--LDLNAPSKGWTKIA--AFPGGPREQAVAAFIDGKL 87
Query: 145 YAMGGYNGQ-------RRQNSVEKYNYTENQWS---LIAPMNCMIQNVTY-----NIYVI 189
Y GG G+ + + V KY+ N W +P+ + +V Y+
Sbjct: 88 YVFGG-IGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVG-LAGHVAVSLHNGKAYIT 145
Query: 190 GG-----FDG 194
GG FDG
Sbjct: 146 GGVNKNIFDG 155
>gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family. Members of
this protein family contain multiple copies of the
beta-propeller-forming Kelch repeat. All are full-length
homologs to YjhT of Escherichia coli, which has been
identified as a mutarotase for sialic acid. This protein
improves bacterial ability to obtain host sialic acid,
and thus serves as a virulence factor. Some bacteria
carry what appears to be a cyclically permuted homolog
of this protein.
Length = 346
Score = 41.2 bits (97), Expect = 0.002
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 18/126 (14%)
Query: 502 HGT-AVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNF---KRCYVSTAVHQDV 557
+GT A+IG +YV G G +Y +K W++IA +F R A
Sbjct: 10 NGTGAIIGDKVYVGLGSAGTSWYK--LDLKKPSKGWQKIA--DFPGGPRNQAVAAAIDGK 65
Query: 558 IYAMGGYNGQ-------RRQNSVEKYNYTENQWS-LIAPMNVERSDASATTLQ-GKIYIT 608
+Y GG G+ + + V +Y+ +N W L V AS +L G+ Y T
Sbjct: 66 LYVFGG-IGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFT 124
Query: 609 GGFNGH 614
GG N +
Sbjct: 125 GGVNKN 130
Score = 40.8 bits (96), Expect = 0.002
Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 19/97 (19%)
Query: 577 NYTENQWSLIAPM-NVERSDASATTLQGKIYITGGFNGHN-------CLNSCEVYDPECN 628
W IA R+ A A + GK+Y+ GG G + YDP+ N
Sbjct: 37 KKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGG-IGKANSEGSPQVFDDVYRYDPKKN 95
Query: 629 QWTLIEPMRHRRS-----GVSCIAYHEC-IYVIGGFN 659
W ++ RS G S + H Y GG N
Sbjct: 96 SWQKLD----TRSPVGLLGASGFSLHNGQAYFTGGVN 128
Score = 35.4 bits (82), Expect = 0.10
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 73 WVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNE------YYNSCRCFNAVTKVWKEI- 125
W KI P GPR A I +YV GG ++ ++ W+++
Sbjct: 43 WQKIADF-PGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLD 101
Query: 126 --APMNFKRCYVSTAVHQDVIYAMGGYN 151
+P+ ++H Y GG N
Sbjct: 102 TRSPVGLLG-ASGFSLHNGQAYFTGGVN 128
Score = 35.4 bits (82), Expect = 0.10
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 487 WVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNE------YYNSCRCFNAVTKVWKEI- 539
W KI P GPR A I +YV GG ++ ++ W+++
Sbjct: 43 WQKIADF-PGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLD 101
Query: 540 --APMNFKRCYVSTAVHQDVIYAMGGYN 565
+P+ ++H Y GG N
Sbjct: 102 TRSPVGLLG-ASGFSLHNGQAYFTGGVN 128
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac. Domain
in Broad-Complex, Tramtrack and Bric a brac. Also known
as POZ (poxvirus and zinc finger) domain. Known to be a
protein-protein interaction motif found at the N-termini
of several C2H2-type transcription factors as well as
Shaw-type potassium channels. Known structure reveals a
tightly intertwined dimer formed via interactions
between N-terminal strand and helix structures. However
in a subset of BTB/POZ domains, these two secondary
structures appear to be missing. Be aware SMART predicts
BTB/POZ domains without the beta1- and alpha1-secondary
structures.
Length = 97
Score = 38.1 bits (89), Expect = 0.002
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLT 304
KL + E+NV LL D+ + +LC +F+ +L
Sbjct: 62 KLDLPEENVEELLELADYLQIPGLVELCEEFLLKLL 97
>gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that Drosophila
ring canal kelch protein is related to Galactose Oxidase
for which a structure has been solved. The kelch motif
forms a beta sheet. Several of these sheets associate to
form a beta propeller structure as found in pfam00064,
pfam00400 and pfam00415.
Length = 48
Score = 34.3 bits (79), Expect = 0.011
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 593 RSDASATTLQGKIYITGGFNGHNCLNSCEV--YDPECNQWTLIEPM 636
R ++ + GK+Y+ GG G L+S ++ DPE N WT + +
Sbjct: 2 RYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPAL 47
Score = 33.1 bits (76), Expect = 0.034
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 84 PRAYHGTAVIGYNIYVIGGFDGN--EYYNSCRCFNAVTKVWKEIAPM 128
PR H + V+G +YV+GG G + + T VW E+ +
Sbjct: 1 PRYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPAL 47
Score = 33.1 bits (76), Expect = 0.034
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 498 PRAYHGTAVIGYNIYVIGGFDGN--EYYNSCRCFNAVTKVWKEIAPM 542
PR H + V+G +YV+GG G + + T VW E+ +
Sbjct: 1 PRYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPAL 47
Score = 32.7 bits (75), Expect = 0.039
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 639 RRSGVSCIAYHECIYVIGGFNGMSRMCNGEK---YNPVTKTWSQVPDM 683
R + + +YV+GG G+ + +P T W+++P +
Sbjct: 1 PRYPHASVVVGGKLYVVGGSTGLG-DLSSSDLWVLDPETNVWTELPAL 47
Score = 32.0 bits (73), Expect = 0.082
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 686 PRSNFAIEVIDDMIFAIGGF--NGVTTIYHVECYDEKTDEWYEATDM 730
PR A V+ ++ +GG G + + D +T+ W E +
Sbjct: 1 PRYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPAL 47
Score = 30.8 bits (70), Expect = 0.22
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 132 RCYVSTAVHQDVIYAMGGY--NGQRRQNSVEKYNYTENQWSLIAPM 175
R ++ V +Y +GG G + + + N W+ + +
Sbjct: 2 RYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPAL 47
Score = 30.8 bits (70), Expect = 0.22
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 546 RCYVSTAVHQDVIYAMGGY--NGQRRQNSVEKYNYTENQWSLIAPM 589
R ++ V +Y +GG G + + + N W+ + +
Sbjct: 2 RYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPAL 47
Score = 27.3 bits (61), Expect = 4.4
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 186 IYVIGGFDGN--EYYNSCRCFNAVTKVWKEIAPM 217
+YV+GG G + + T VW E+ +
Sbjct: 14 LYVVGGSTGLGDLSSSDLWVLDPETNVWTELPAL 47
>gnl|CDD|225597 COG3055, COG3055, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 381
Score = 38.5 bits (90), Expect = 0.011
Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 15/79 (18%)
Query: 592 ERSDASATTLQGKIYITGGFNGHN-----CLNSCEVYDPECNQWTLIEPMRHRRS----- 641
R+ A A + GK+Y+ GG+ N YDP N W RS
Sbjct: 82 ARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWH----KLDTRSPTGLV 137
Query: 642 GVSCIAYHEC-IYVIGGFN 659
G S + + IY GG N
Sbjct: 138 GASTFSLNGTKIYFFGGVN 156
Score = 31.2 bits (71), Expect = 2.5
Identities = 28/108 (25%), Positives = 39/108 (36%), Gaps = 14/108 (12%)
Query: 53 GWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNE----- 107
G +G + +V W KI P G R AVIG +YV GG+ +
Sbjct: 54 GSAGTA--FYVLDLKKPGKGWTKIADF-PGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQ 110
Query: 108 YYNSCRCFNAVTKVWKE---IAPMNFKRCYVSTAVHQDV-IYAMGGYN 151
+N ++ T W + +P ST IY GG N
Sbjct: 111 VFNDAYRYDPSTNSWHKLDTRSPTGLVG--ASTFSLNGTKIYFFGGVN 156
Score = 31.2 bits (71), Expect = 2.5
Identities = 28/108 (25%), Positives = 39/108 (36%), Gaps = 14/108 (12%)
Query: 467 GWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNE----- 521
G +G + +V W KI P G R AVIG +YV GG+ +
Sbjct: 54 GSAGTA--FYVLDLKKPGKGWTKIADF-PGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQ 110
Query: 522 YYNSCRCFNAVTKVWKE---IAPMNFKRCYVSTAVHQDV-IYAMGGYN 565
+N ++ T W + +P ST IY GG N
Sbjct: 111 VFNDAYRYDPSTNSWHKLDTRSPTGLVG--ASTFSLNGTKIYFFGGVN 156
>gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif. The kelch motif was initially
discovered in Kelch. In this protein there are six
copies of the motif. It has been shown that the
Drosophila ring canal kelch protein is related to
Galactose Oxidase for which a structure has been solved.
The kelch motif forms a beta sheet. Several of these
sheets associate to form a beta propeller structure as
found in pfam00064, pfam00400 and pfam00415.
Length = 42
Score = 33.0 bits (76), Expect = 0.028
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 84 PRAYHGTAVIGYNIYVIGGFDGNE 107
PRA H V+G IY+ GG+
Sbjct: 4 PRANHCAVVVGGEIYLYGGYTSGN 27
Score = 33.0 bits (76), Expect = 0.028
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 498 PRAYHGTAVIGYNIYVIGGFDGNE 521
PRA H V+G IY+ GG+
Sbjct: 4 PRANHCAVVVGGEIYLYGGYTSGN 27
Score = 28.3 bits (64), Expect = 1.3
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 686 PRSNFAIEVIDDMIFAIGGFNGVTTIY 712
PR+N V+ I+ GG+
Sbjct: 4 PRANHCAVVVGGEIYLYGGYTSGNGQS 30
>gnl|CDD|234533 TIGR04285, nucleoid_noc, nucleoid occlusion protein. This model
describes nucleoid occlusion protein, a close homolog to
ParB chromosome partitioning proteins including Spo0J in
Bacillus subtilis. Its gene often is located near the
gene for the Spo0J ortholog. This protein bind a
specific DNA sequence and blocks cytokinesis from
happening until chromosome segregation is complete.
Length = 255
Score = 35.9 bits (84), Expect = 0.052
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 354 LEEIISSDELNVKSEETVWELIIRWIDY--DPENRKKHIVSLMKNIRL 399
L EII LNVK E ELI + ++ P+ +KK K++R+
Sbjct: 174 LNEIIE-KGLNVKQTE---ELIKKLLEKPEKPKKKKKRRKGFSKDVRI 217
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain. The BTB (for BR-C, ttk and bab) or
POZ (for Pox virus and Zinc finger) domain is present
near the N-terminus of a fraction of zinc finger
(pfam00096) proteins and in proteins that contain the
pfam01344 motif such as Kelch and a family of pox virus
proteins. The BTB/POZ domain mediates homomeric
dimerisation and in some instances heteromeric
dimerisation. The structure of the dimerised PLZF
BTB/POZ domain has been solved and consists of a tightly
intertwined homodimer. The central scaffolding of the
protein is made up of a cluster of alpha-helices flanked
by short beta-sheets at both the top and bottom of the
molecule. POZ domains from several zinc finger proteins
have been shown to mediate transcriptional repression
and to interact with components of histone deacetylase
co-repressor complexes including N-CoR and SMRT. The POZ
or BTB domain is also known as BR-C/Ttk or ZiN.
Length = 101
Score = 33.0 bits (76), Expect = 0.13
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301
KL ITE+NV LL D + D C +F+
Sbjct: 69 KLEITEENVDDLLALADKLQIPALIDKCEEFLI 101
>gnl|CDD|205932 pfam13758, Prefoldin_3, Prefoldin subunit. This family includes
prefoldin subunits that are not detected by pfam02996.
Length = 97
Score = 32.3 bits (74), Expect = 0.18
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 328 TRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPENRK 387
TR+ +LR + R+ + ++E+E++EI+ + ++ + V +LI R IDY +N
Sbjct: 29 TREDLLR----IGRDFGGSL-VNEKEIKEILGEKQGITRTRQQVVDLISRRIDYVKQN-- 81
Query: 388 KHIVSLMKNIR 398
I +L K +
Sbjct: 82 --IATLEKRLE 90
>gnl|CDD|215908 pfam00413, Peptidase_M10, Matrixin. The members of this family
are enzymes that cleave peptides. These proteases
require zinc for catalysis.
Length = 159
Score = 31.8 bits (73), Expect = 0.59
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 35 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD 71
TP+++R V I A WS +P F E AD
Sbjct: 15 TPDLSRDEVRRAIRRAFKVWSEVTPLTFTEVPTGTAD 51
Score = 31.8 bits (73), Expect = 0.59
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 449 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD 485
TP+++R V I A WS +P F E AD
Sbjct: 15 TPDLSRDEVRRAIRRAFKVWSEVTPLTFTEVPTGTAD 51
>gnl|CDD|170033 PRK09644, PRK09644, RNA polymerase sigma factor SigM; Provisional.
Length = 165
Score = 31.4 bits (71), Expect = 0.95
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 312 ILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETV 371
I L D+ +K++ W K F+D R+ +++ F+ E+E I + +
Sbjct: 41 IYLEDYDN--QKVKPWLFKVAYHTFIDFVRKEKKVSFVGTDEIEAIQAESTEEYVVAKNS 98
Query: 372 WELIIRWIDYDPENRKKHI 390
+E +I+ I P + I
Sbjct: 99 YEKLIQIIHTLPVIEAQAI 117
>gnl|CDD|227217 COG4880, COG4880, Secreted protein containing C-terminal
beta-propeller domain distantly related to WD-40 repeats
[General function prediction only].
Length = 603
Score = 31.0 bits (70), Expect = 2.6
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 14/109 (12%)
Query: 170 SLIAPM-NCMIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 228
++ P+ C I + N+ IG G YN + + K++ NF YV +
Sbjct: 134 TIDCPIPECGILALGGNVLAIGEVGGITLYN-------LYESSKKVWVYNFNGSYVDARL 186
Query: 229 HQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITEDNV 277
+ +Y + R++S++ N +I E L+ + D
Sbjct: 187 YNGELYIVA------RKSSIDCPIVVINGREINEAPLYSPDFPMDPDTT 229
>gnl|CDD|224395 COG1478, COG1478, GTP and metal dependent enzyme involved F420
coenzyme biosynthesis (catalyzes addition of two
l-glutamates to F420 precursor) [Coenzyme transport and
metabolism].
Length = 257
Score = 30.8 bits (70), Expect = 2.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 258 DKIEEKKLFERKLHITEDNVASLLLATDFFCMSKAQD 294
D E+ L+ R+L +TE+ VA L A M + +
Sbjct: 177 DYRGERDLYGRELKVTEEAVADELAAAANLVMGEGDE 213
>gnl|CDD|220782 pfam10494, Stk19, Serine-threonine protein kinase 19. This
serine-threonine protein kinase number 19 is expressed
from the MHC and predominantly in the nucleus. Protein
kinases are involved in signal transduction pathways and
play fundamental roles in the regulation of cell
functions. This is a novel Ser/Thr protein kinase, that
has Mn2+-dependent protein kinase activity that
phosphorylates alpha -casein at Ser/Thr residues and
histone at Ser residues. It can be covalently modified
by the reactive ATP analogue
5'-p-fluorosulfonylbenzoyladenosine in the absence of
ATP, and this modification is prevented in the presence
of 1 mM ATP, indicating that the kinase domain of is
capable of binding ATP.
Length = 232
Score = 30.4 bits (69), Expect = 3.4
Identities = 35/203 (17%), Positives = 66/203 (32%), Gaps = 41/203 (20%)
Query: 216 PMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITED 275
+ ++R + V +Y++ VE+ E ++ I E + RK I
Sbjct: 24 VLKYRRNTLPPLVTVSQLYSL--LQNP---TKVER----ELEELIREGII--RKFVINNG 72
Query: 276 NVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKL-EEWTRKYILR 334
L L D + K+ D F T + F K L I
Sbjct: 73 LGKVLYLFEDVEGLVKSDDYLDKFKSEST-----------LLEKFLKLLISNPNALSI-- 119
Query: 335 NFVDVARESEEIVFISEQELEEIISSDELNVK-SEETVWELII----RWIDYDPENRKKH 389
+F + +E+ ++ + L SE + + + ++ R K
Sbjct: 120 --------GRSELF-TGEEITLLVQAGFLTSSESETHSYHISLPNTGPFLKLLNSGR-KW 169
Query: 390 IVSLMKNIRLG-LLETEFFREKV 411
++SL+K + LLE +
Sbjct: 170 LLSLLKKSKYKELLEDLLRKRWD 192
>gnl|CDD|181899 PRK09485, mmuM, homocysteine methyltransferase; Provisional.
Length = 304
Score = 30.6 bits (70), Expect = 3.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 667 GEKYNPVTKTWSQVPD 682
GE Y+ VTKTW D
Sbjct: 250 GEVYDAVTKTWHGPAD 265
>gnl|CDD|222785 PHA00368, PHA00368, internal virion protein D.
Length = 1315
Score = 30.9 bits (70), Expect = 3.5
Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 20/111 (18%)
Query: 683 MYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVI 742
YN + + + D F+ GG + E Y + I R L A +
Sbjct: 564 TYNDLYDAMEDAMKDPEFSTGGAKMSR--------EAARQEIYRRVALAIERPELQANLT 615
Query: 743 MGLPNVYDYIHQHRDSLMEEKRQKLLAIEGRQRQNQSEEGNSSQQSVLPSS 793
V D + +H D KR+ + +N + GN+ S+ P S
Sbjct: 616 KAERKVMDILKEHFDL----KREMM--------ENPAIFGNTKAVSIFPGS 654
>gnl|CDD|223185 COG0107, HisF, Imidazoleglycerol-phosphate synthase [Amino acid
transport and metabolism].
Length = 256
Score = 30.2 bits (69), Expect = 4.3
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 14/52 (26%)
Query: 21 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETY-DTRAD 71
YDLEL + V P IA GG G P FVE + + +AD
Sbjct: 186 YDLELTRAVREAVNIPVIAS-----------GG--AGKPEHFVEAFTEGKAD 224
Score = 30.2 bits (69), Expect = 4.3
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 14/52 (26%)
Query: 435 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETY-DTRAD 485
YDLEL + V P IA GG G P FVE + + +AD
Sbjct: 186 YDLELTRAVREAVNIPVIAS-----------GG--AGKPEHFVEAFTEGKAD 224
>gnl|CDD|227780 COG5493, COG5493, Uncharacterized conserved protein containing a
coiled-coil domain [Function unknown].
Length = 231
Score = 29.8 bits (67), Expect = 4.4
Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 323 KLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYD 382
KL W + ++ ++ +E+E+ ++EL + ++E + +L+ R+ + +
Sbjct: 35 KLTPWQQLATKQDVEELRKETEQR----QKELADEKLEVRKQKATKEDL-KLLQRFQEEE 89
Query: 383 PENRKKHIVSLMKNI-----RLGLLETEFFREKVKH 413
K+ I L I R G+L + FR+ V+
Sbjct: 90 FRATKEDIKRLETIITGLGARWGILSEDAFRQGVRE 125
>gnl|CDD|220221 pfam09402, MSC, Man1-Src1p-C-terminal domain. MAN1 is an integral
protein of the inner nuclear membrane which binds to
chromatin associated proteins and plays a role in
nuclear organisation. The C terminal nucleoplasmic
region forms a DNA binding winged helix and binds to
Smad. This C-terminal tail is also found in S.
cerevisiae and is thought to consist of three conserved
helices followed by two downstream strands.
Length = 326
Score = 29.7 bits (67), Expect = 5.8
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 322 KKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIIS---SDELNVKSEETVWELIIRW 378
++L + K+ E + ISE EL E++S S +N + E +W+ I+
Sbjct: 104 EELRKRNAKHE-------CGEDDLSPGISENELYELLSEKKSPWINEEEFEDLWKAAIKE 156
Query: 379 IDYDPENRKKHIVSLMKNIRLGLLETEFFRE 409
+ +PE + L KN + R
Sbjct: 157 LKENPEVVIRPEPILSKNGDGSTETQKTLRS 187
>gnl|CDD|240082 cd04731, HisF, The cyclase subunit of imidazoleglycerol phosphate
synthase (HisF). Imidazole glycerol phosphate synthase
(IGPS) catalyzes the fifth step of histidine
biosynthesis, the formation of the imidazole ring. IGPS
converts
N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-
carboxamide ribonucleotide (PRFAR) to imidazole glycerol
phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide)
ribonucleotide (AICAR). This conversion involves two
tightly coupled reactions in distinct active sites of
IGPS. The two catalytic domains can be fused, like in
fungi and plants, or peformed by a heterodimer
(HisH-glutaminase and HisF-cyclase), like in bacteria.
Length = 243
Score = 29.4 bits (67), Expect = 7.0
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 17/46 (36%)
Query: 21 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGG--SPTDFVE 64
YDLELI + V P IA SGG P FVE
Sbjct: 180 YDLELIRAVSSAVNIPVIA---------------SGGAGKPEHFVE 210
Score = 29.4 bits (67), Expect = 7.0
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 17/46 (36%)
Query: 435 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGG--SPTDFVE 478
YDLELI + V P IA SGG P FVE
Sbjct: 180 YDLELIRAVSSAVNIPVIA---------------SGGAGKPEHFVE 210
>gnl|CDD|185600 PTZ00410, PTZ00410, NAD-dependent SIR2; Provisional.
Length = 349
Score = 29.5 bits (66), Expect = 8.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 780 EEGNSSQQSVLPSSNSNVSSSDG 802
E +SS S S +S SSSDG
Sbjct: 265 EGRSSSSSSRSSSDSSTSSSSDG 287
>gnl|CDD|217114 pfam02574, S-methyl_trans, Homocysteine S-methyltransferase. This
is a family of related homocysteine S-methyltransferases
enzymes: 5-methyltetrahydrofolate--homocysteine
S-methyltransferases also known EC:2.1.1.13;
Betaine--homocysteine S-methyltransferase (vitamin B12
dependent), EC:2.1.1.5; and Homocysteine
S-methyltransferase, EC:2.1.1.10.
Length = 303
Score = 29.3 bits (66), Expect = 9.5
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 667 GEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHV 714
GE Y+ K + PD P E + IGG G TT H+
Sbjct: 248 GEPYDAGKKEYDGTPDELAPSYWSLKEFVASGARIIGGCCG-TTPDHI 294
>gnl|CDD|212595 cd11721, FANCD2, Fanconi anemia D2 protein. The Fanconi anemia ID
complex consists of two subunits, Fanconi anemia I and
Fanconi anemia D2 (FANCI-FANCD2) and plays a central
role in the repair of DNA interstrand cross-links
(ICLs). The complex is activated via DNA damage-induced
phosphorylation by ATR (ataxia telangiectasia and
Rad3-related) and monoubiquitination by the FA core
complex ubiquitin ligase, and it binds to DNA at the ICL
site, recognizing branched DNA structures. Defects in
the complex cause Fanconi anemia, a cancer
predisposition syndrome. The phosphorylation of FANCD2
is required for DNA damage-induced intra-S phase
checkpoint and for cellular resistance to DNA
crosslinking agents.
Length = 1161
Score = 29.6 bits (67), Expect = 10.0
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 383 PENRKKHIVSLMKN-IRLGLLETEFFREKVKHHPYV 417
E+++K I SL+K I+ G + T H V
Sbjct: 291 NEDKRKSIESLLKKKIKSGFIRTSLLDLAFTGHSQV 326
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.428
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 42,831,572
Number of extensions: 4231953
Number of successful extensions: 3623
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3520
Number of HSP's successfully gapped: 146
Length of query: 824
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 719
Effective length of database: 6,280,432
Effective search space: 4515630608
Effective search space used: 4515630608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.1 bits)