RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17309
(824 letters)
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway,
protein-binding, UBI degradation, UBL conjugation
pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Length = 301
Score = 370 bits (952), Expect = e-122
Identities = 104/297 (35%), Positives = 150/297 (50%), Gaps = 9/297 (3%)
Query: 453 ARPRV-PHEILFAIGGW-SGGSPTDFVETYDTRADRWVKIDQVDPM-GPRAYHGTAVIGY 509
R R+ +E+L +GG+ S SP D VE YD + W + + R Y + +
Sbjct: 7 TRARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWS---FLPSITRKRRYVASVSLHD 63
Query: 510 NIYVIGGFDGNEYYNSCRCFNAVTK---VWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNG 566
IYVIGG+DG +S C + VW +APMN +R D+IY GG++G
Sbjct: 64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDG 123
Query: 567 QRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPE 626
RR S+E+Y+ +QWS++ M R A G IY GG++G N LNS E YDP
Sbjct: 124 SRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPH 183
Query: 627 CNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNP 686
WT + PM +RSG ++ IYV+GGF+G + + + E YN T +W+ V M P
Sbjct: 184 TGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP 243
Query: 687 RSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIM 743
R V+ ++AI G++G + + +ECYD D W T M R CV+
Sbjct: 244 RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLR 300
Score = 285 bits (731), Expect = 5e-90
Identities = 86/252 (34%), Positives = 135/252 (53%), Gaps = 5/252 (1%)
Query: 498 PRAYHGTAVIGYNIYVIGGFDGNE-YYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD 556
PR + V+GGF + + ++ T+ W + + KR YV++ D
Sbjct: 5 PRTRARLGANEV-LLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHD 63
Query: 557 VIYAMGGYNGQRRQNSVEKYNYTENQ---WSLIAPMNVERSDASATTLQGKIYITGGFNG 613
IY +GGY+G+ R +SVE +YT ++ W +APMNV R A ATTL IY++GGF+G
Sbjct: 64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDG 123
Query: 614 HNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPV 673
S E YDP +QW+++ M+ R G + IY +GG++G++ + + EKY+P
Sbjct: 124 SRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPH 183
Query: 674 TKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIY 733
T W+ V M RS + +++D I+ +GGF+G + VE Y+ +TD W T M
Sbjct: 184 TGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP 243
Query: 734 RSALSACVIMGL 745
R + A V+ G
Sbjct: 244 RCYVGATVLRGR 255
Score = 277 bits (710), Expect = 5e-87
Identities = 77/237 (32%), Positives = 110/237 (46%), Gaps = 1/237 (0%)
Query: 462 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGFDGN 520
++ IGG+ G S VE D AD V PM R G +G IYV GGFDG+
Sbjct: 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGS 124
Query: 521 EYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTE 580
+ S ++ W + M R V VIY +GGY+G NSVEKY+
Sbjct: 125 RRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHT 184
Query: 581 NQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRR 640
W+ + PM +RS A L IY+ GGF+G L+S E Y+ + WT + M R
Sbjct: 185 GHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR 244
Query: 641 SGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDD 697
V +Y I G++G S + + E Y+P+ +W V M R + + V+ +
Sbjct: 245 CYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLRE 301
Score = 244 bits (626), Expect = 7e-75
Identities = 76/230 (33%), Positives = 113/230 (49%), Gaps = 14/230 (6%)
Query: 39 ARPRV-PHEILFAIGGW-SGGSPTDFVETYDTRADRWVKIDQVDPM-GPRAYHGTAVIGY 95
R R+ +E+L +GG+ S SP D VE YD + W + + R Y + +
Sbjct: 7 TRARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWS---FLPSITRKRRYVASVSLHD 63
Query: 96 NIYVIGGFDGNEYYNSCRCFNAVTK---VWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNG 152
IYVIGG+DG +S C + VW +APMN +R D+IY GG++G
Sbjct: 64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDG 123
Query: 153 QRRQNSVEKYNYTENQWSLIAPMNCMIQN---VTYN--IYVIGGFDGNEYYNSCRCFNAV 207
RR S+E+Y+ +QWS++ M + V + IY +GG+DG NS ++
Sbjct: 124 SRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPH 183
Query: 208 TKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
T W + PM KR A+ D IY +GG++G +SVE YN +
Sbjct: 184 TGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS 233
Score = 227 bits (582), Expect = 2e-68
Identities = 72/219 (32%), Positives = 100/219 (45%), Gaps = 12/219 (5%)
Query: 48 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGFDGN 106
++ IGG+ G S VE D AD V PM R G +G IYV GGFDG+
Sbjct: 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGS 124
Query: 107 EYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTE 166
+ S ++ W + M R V VIY +GGY+G NSVEKY+
Sbjct: 125 RRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHT 184
Query: 167 NQWSLIAPMN------CMIQNVTYN--IYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN 218
W+ + PM + N IYV+GGFDG + +S +N T W + M
Sbjct: 185 GHWTNVTPMATKRSGAGV---ALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241
Query: 219 FKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
RCYV V + +YA+ GY+G +S+E Y+ +
Sbjct: 242 TPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280
Score = 217 bits (556), Expect = 9e-65
Identities = 59/207 (28%), Positives = 99/207 (47%), Gaps = 5/207 (2%)
Query: 542 MNFKRCYVSTAVHQDVIYAMGGYNGQRR-QNSVEKYNYTENQWSLIAPMNVERSDASATT 600
M R + +V+ +GG+ Q+ + VEKY+ +WS + + +R ++ +
Sbjct: 2 MQGPRTRARLGAN-EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS 60
Query: 601 LQGKIYITGGFNGHNCLNSCEVYDPECNQ---WTLIEPMRHRRSGVSCIAYHECIYVIGG 657
L +IY+ GG++G + L+S E D ++ W + PM RR + IYV GG
Sbjct: 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGG 120
Query: 658 FNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECY 717
F+G R + E+Y+P WS + DM R + V +I+ +GG++G+ + VE Y
Sbjct: 121 FDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKY 180
Query: 718 DEKTDEWYEATDMNIYRSALSACVIMG 744
D T W T M RS ++
Sbjct: 181 DPHTGHWTNVTPMATKRSGAGVALLND 207
Score = 192 bits (489), Expect = 2e-55
Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 15/193 (7%)
Query: 48 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGFDGN 106
++ GG+ G +E YD D+W + M R G V IY +GG+DG
Sbjct: 115 IYVSGGFDGSRRHTSMERYDPNIDQWSM---LGDMQTAREGAGLVVASGVIYCLGGYDGL 171
Query: 107 EYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTE 166
NS ++ T W + PM KR A+ D IY +GG++G +SVE YN
Sbjct: 172 NILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRT 231
Query: 167 NQWSLIAPMN--------CMIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN 218
+ W+ + M +++ +Y I G+DGN +S C++ + W+ + M
Sbjct: 232 DSWTTVTSMTTPRCYVGATVLRG---RLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMG 288
Query: 219 FKRCYVSTAVHQD 231
+RC V ++
Sbjct: 289 TQRCDAGVCVLRE 301
Score = 178 bits (454), Expect = 2e-50
Identities = 57/183 (31%), Positives = 85/183 (46%), Gaps = 10/183 (5%)
Query: 84 PRAYHGTAVIGYNIYVIGGFDGNE-YYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD 142
PR + V+GGF + + ++ T+ W + + KR YV++ D
Sbjct: 5 PRTRARLGANEV-LLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHD 63
Query: 143 VIYAMGGYNGQRRQNSVEKYNYTENQ---WSLIAPMN---CMIQNVTYN--IYVIGGFDG 194
IY +GGY+G+ R +SVE +YT ++ W +APMN + T IYV GGFDG
Sbjct: 64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDG 123
Query: 195 NEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYT 254
+ + S ++ W + M R V VIY +GGY+G NSVEKY+
Sbjct: 124 SRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPH 183
Query: 255 ENQ 257
Sbjct: 184 TGH 186
Score = 132 bits (335), Expect = 2e-34
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 16/142 (11%)
Query: 128 MNFKRCYVSTAVHQDVIYAMGGYNGQRR-QNSVEKYNYTENQWSLIAPMN--------CM 178
M R + +V+ +GG+ Q+ + VEKY+ +WS + +
Sbjct: 2 MQGPRTRARLGAN-EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS 60
Query: 179 IQNVTYNIYVIGGFDGNEYYNSCRCFNAVTK---VWKEIAPMNFKRCYVSTAVHQDVIYA 235
+ + IYVIGG+DG +S C + VW +APMN +R D+IY
Sbjct: 61 LHD---RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYV 117
Query: 236 MGGYNGQRRQNSVEKYNYTENQ 257
GG++G RR S+E+Y+ +Q
Sbjct: 118 SGGFDGSRRHTSMERYDPNIDQ 139
Score = 83.5 bits (207), Expect = 1e-17
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 186 IYVIGGFDGNE-YYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRR 244
+ V+GGF + + ++ T+ W + + KR YV++ D IY +GGY+G+ R
Sbjct: 17 LLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSR 76
Query: 245 QNSVEKYNYTENQD 258
+SVE +YT ++D
Sbjct: 77 LSSVECLDYTADED 90
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo
sapiens}
Length = 302
Score = 363 bits (933), Expect = e-120
Identities = 90/299 (30%), Positives = 145/299 (48%), Gaps = 11/299 (3%)
Query: 454 RPRVP---HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPM-GPRAYHGTAVIGY 509
R R P +++ +GG VE YD + +RW QV + R G +
Sbjct: 7 RLRTPMNLPKLMVVVGGQ-APKAIRSVECYDFKEERWH---QVAELPSRRCRAGMVYMAG 62
Query: 510 NIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRR 569
++ +GGF+G+ + ++ V W +A M +R + AV ++YA+GG++G
Sbjct: 63 LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTG 122
Query: 570 QNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNG--HNCLNSCEVYDPEC 627
+SVE YN N+W +APMN RS + G +Y GG++ CL++ E Y+
Sbjct: 123 LSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATT 182
Query: 628 NQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPR 687
N+WT I M RRSG + +Y +GG +G + E Y+P T W QV DM R
Sbjct: 183 NEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCR 242
Query: 688 SNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEW-YEATDMNIYRSALSACVIMGL 745
N + ++ +++ +GG +G + VE Y+ TD+W ++ M+ RS VI
Sbjct: 243 RNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKR 301
Score = 289 bits (742), Expect = 1e-91
Identities = 77/252 (30%), Positives = 127/252 (50%), Gaps = 2/252 (0%)
Query: 496 MGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQ 555
M R T + + V+ G + S C++ + W ++A + +RC
Sbjct: 2 MSVRTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMA 61
Query: 556 DVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHN 615
+++A+GG+NG R +V+ Y+ ++QW+ +A M RS A L G +Y GGF+G
Sbjct: 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGST 121
Query: 616 CLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMC--NGEKYNPV 673
L+S E Y+ + N+W + PM RRS V +Y +GG++ SR C E YN
Sbjct: 122 GLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNAT 181
Query: 674 TKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIY 733
T W+ + +M RS + V++++++A+GG +G VE YD T+ W + DMN+
Sbjct: 182 TNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC 241
Query: 734 RSALSACVIMGL 745
R C + GL
Sbjct: 242 RRNAGVCAVNGL 253
Score = 272 bits (699), Expect = 3e-85
Identities = 86/242 (35%), Positives = 124/242 (51%), Gaps = 7/242 (2%)
Query: 462 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGFDGN 520
+FA+GG++G V++YD D+W V M R+ G AV+ +Y +GGFDG+
Sbjct: 64 VFAVGGFNGSLRVRTVDSYDPVKDQWT---SVANMRDRRSTLGAAVLNGLLYAVGGFDGS 120
Query: 521 EYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQ--NSVEKYNY 578
+S +N + W +APMN +R V V ++YA+GGY+ RQ ++VE YN
Sbjct: 121 TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNA 180
Query: 579 TENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRH 638
T N+W+ IA M+ RS A L +Y GG +G S EVYDP N W + M
Sbjct: 181 TTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM 240
Query: 639 RRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQV-PDMYNPRSNFAIEVIDD 697
R A + +YV+GG +G + + E YNP T W+ V M RS + VID
Sbjct: 241 CRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDK 300
Query: 698 MI 699
+
Sbjct: 301 RL 302
Score = 241 bits (617), Expect = 2e-73
Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 15/229 (6%)
Query: 40 RPRVP---HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPM-GPRAYHGTAVIGY 95
R R P +++ +GG VE YD + +RW QV + R G +
Sbjct: 7 RLRTPMNLPKLMVVVGGQ-APKAIRSVECYDFKEERWH---QVAELPSRRCRAGMVYMAG 62
Query: 96 NIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRR 155
++ +GGF+G+ + ++ V W +A M +R + AV ++YA+GG++G
Sbjct: 63 LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTG 122
Query: 156 QNSVEKYNYTENQWSLIAPMNCMIQN---VTYN--IYVIGGFDG--NEYYNSCRCFNAVT 208
+SVE YN N+W +APMN + +Y +GG+D + ++ C+NA T
Sbjct: 123 LSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATT 182
Query: 209 KVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
W IA M+ +R V +++YA+GG++G + SVE Y+ T N
Sbjct: 183 NEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNA 231
Score = 224 bits (572), Expect = 4e-67
Identities = 72/218 (33%), Positives = 111/218 (50%), Gaps = 11/218 (5%)
Query: 48 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGFDGN 106
+FA+GG++G V++YD D+W V M R+ G AV+ +Y +GGFDG+
Sbjct: 64 VFAVGGFNGSLRVRTVDSYDPVKDQWT---SVANMRDRRSTLGAAVLNGLLYAVGGFDGS 120
Query: 107 EYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQ--NSVEKYNY 164
+S +N + W +APMN +R V V ++YA+GGY+ RQ ++VE YN
Sbjct: 121 TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNA 180
Query: 165 TENQWSLIAPMN---CMIQNVTYN--IYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNF 219
T N+W+ IA M+ N +Y +GG DG S ++ T W+++A MN
Sbjct: 181 TTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM 240
Query: 220 KRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
R ++Y +GG +G SVE YN T ++
Sbjct: 241 CRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278
Score = 188 bits (480), Expect = 4e-54
Identities = 61/195 (31%), Positives = 98/195 (50%), Gaps = 12/195 (6%)
Query: 48 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGFDG- 105
L+A+GG+ G + VE Y+ +++ W V PM R+ G V+G +Y +GG+D
Sbjct: 111 LYAVGGFDGSTGLSSVEAYNIKSNEWFH---VAPMNTRRSSVGVGVVGGLLYAVGGYDVA 167
Query: 106 -NEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNY 164
+ ++ C+NA T W IA M+ +R V +++YA+GG++G + SVE Y+
Sbjct: 168 SRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDP 227
Query: 165 TENQWSLIAPMNCMIQN---VTYN--IYVIGGFDGNEYYNSCRCFNAVTKVWKEIAP-MN 218
T N W +A MN +N N +YV+GG DG+ S +N T W ++ M+
Sbjct: 228 TTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMS 287
Query: 219 FKRCYVSTAVHQDVI 233
R Y V +
Sbjct: 288 TGRSYAGVTVIDKRL 302
Score = 176 bits (449), Expect = 7e-50
Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 13/186 (6%)
Query: 82 MGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQ 141
M R T + + V+ G + S C++ + W ++A + +RC
Sbjct: 2 MSVRTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMA 61
Query: 142 DVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMN--------CMIQNVTYNIYVIGGFD 193
+++A+GG+NG R +V+ Y+ ++QW+ +A M ++ +Y +GGFD
Sbjct: 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNG---LLYAVGGFD 118
Query: 194 GNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQ--NSVEKY 251
G+ +S +N + W +APMN +R V V ++YA+GGY+ RQ ++VE Y
Sbjct: 119 GSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECY 178
Query: 252 NYTENQ 257
N T N+
Sbjct: 179 NATTNE 184
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat
motif, protein binding; HET: MSE; 1.35A {Homo sapiens}
SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A
2z32_A 3ade_A
Length = 308
Score = 360 bits (926), Expect = e-118
Identities = 103/298 (34%), Positives = 150/298 (50%), Gaps = 14/298 (4%)
Query: 454 RPRVPH-----EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPM-GPRAYHGTAVI 507
PR H +++ GG+ S ++E Y+ W+ ++ + PR+ V+
Sbjct: 14 VPRGSHAPKVGRLIYTAGGYFRQS-LSYLEAYNPSNGTWL---RLADLQVPRSGLAGCVV 69
Query: 508 GYNIYVIGGF----DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGG 563
G +Y +GG DGN ++ C+N +T W APM+ R + V IYA+GG
Sbjct: 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGG 129
Query: 564 YNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVY 623
+G NSVE+Y ++W L+APM R L +Y GGF+G N LNS E Y
Sbjct: 130 SHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECY 189
Query: 624 DPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDM 683
PE N+W +I M RSG H CIY GG++G ++ + E+Y+ T+TW+ V M
Sbjct: 190 YPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 249
Query: 684 YNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACV 741
+ RS I V I+ +GG++G T + VECYD TD W E T M RS + V
Sbjct: 250 KHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 307
Score = 278 bits (712), Expect = 3e-87
Identities = 82/252 (32%), Positives = 122/252 (48%), Gaps = 6/252 (2%)
Query: 498 PRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDV 557
PR H V IY GG+ + + +N W +A + R ++ V +
Sbjct: 15 PRGSHAPKVGRL-IYTAGGYFR-QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGL 72
Query: 558 IYAMGGYN----GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNG 613
+YA+GG N G ++++ YN NQWS APM+V R+ + G IY GG +G
Sbjct: 73 LYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHG 132
Query: 614 HNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPV 673
NS E Y+PE ++W L+ PM RR GV + +Y +GGF+G +R+ + E Y P
Sbjct: 133 CIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPE 192
Query: 674 TKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIY 733
W + M RS + V+ + I+A GG++G + VE YD +T+ W M
Sbjct: 193 RNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR 252
Query: 734 RSALSACVIMGL 745
RSAL V G
Sbjct: 253 RSALGITVHQGR 264
Score = 237 bits (606), Expect = 7e-72
Identities = 73/233 (31%), Positives = 109/233 (46%), Gaps = 19/233 (8%)
Query: 40 RPRVPH-----EILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPM-GPRAYHGTAVI 93
PR H +++ GG+ S ++E Y+ W+ ++ + PR+ V+
Sbjct: 14 VPRGSHAPKVGRLIYTAGGYFRQS-LSYLEAYNPSNGTWL---RLADLQVPRSGLAGCVV 69
Query: 94 GYNIYVIGGF----DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGG 149
G +Y +GG DGN ++ C+N +T W APM+ R + V IYA+GG
Sbjct: 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGG 129
Query: 150 YNGQRRQNSVEKYNYTENQWSLIAPMNCMIQN---VTYN--IYVIGGFDGNEYYNSCRCF 204
+G NSVE+Y ++W L+APM N +Y +GGFDG NS C+
Sbjct: 130 SHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECY 189
Query: 205 NAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
W+ I MN R V + IYA GGY+GQ + NSVE+Y+
Sbjct: 190 YPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETET 242
Score = 223 bits (571), Expect = 8e-67
Identities = 73/240 (30%), Positives = 113/240 (47%), Gaps = 19/240 (7%)
Query: 34 PTPEIARPRVPHEI------LFAIGGWS----GGSPTDFVETYDTRADRWVKIDQVDPMG 83
++ PR L+A+GG + G + + ++ Y+ ++W PM
Sbjct: 53 RLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP---CAPMS 109
Query: 84 -PRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQD 142
PR G VI +IY +GG G ++NS + W +APM +R V AV
Sbjct: 110 VPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNR 169
Query: 143 VIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMN---CMIQNVTYN--IYVIGGFDGNEY 197
++YA+GG++G R NS E Y N+W +I MN + IY GG+DG +
Sbjct: 170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQ 229
Query: 198 YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
NS ++ T+ W +APM +R + VHQ IY +GGY+G +SVE Y+ +
Sbjct: 230 LNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289
Score = 195 bits (498), Expect = 1e-56
Identities = 65/187 (34%), Positives = 91/187 (48%), Gaps = 9/187 (4%)
Query: 48 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGFDGN 106
++A+GG G + VE Y+ D W V PM R G AV+ +Y +GGFDG
Sbjct: 124 IYAVGGSHGCIHHNSVERYEPERDEWHL---VAPMLTRRIGVGVAVLNRLLYAVGGFDGT 180
Query: 107 EYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTE 166
NS C+ W+ I MN R V + IYA GGY+GQ + NSVE+Y+
Sbjct: 181 NRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVET 240
Query: 167 NQWSLIAPMNCMIQN---VTYN--IYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKR 221
W+ +APM + IYV+GG+DG+ + +S C++ T W E+ M R
Sbjct: 241 ETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGR 300
Query: 222 CYVSTAV 228
V AV
Sbjct: 301 SGVGVAV 307
Score = 79.3 bits (196), Expect = 3e-16
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 163 NYTENQWSLIAPMNCMIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRC 222
++ + S + P V IY GG+ + + +N W +A + R
Sbjct: 4 HHHHHHSSGLVPRGSHAPKVGRLIYTAGGYFR-QSLSYLEAYNPSNGTWLRLADLQVPRS 62
Query: 223 YVSTAVHQDVIYAMGGYN----GQRRQNSVEKYNYTENQ 257
++ V ++YA+GG N G ++++ YN NQ
Sbjct: 63 GLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural
genomics, structur genomics consortium, SGC, kelch
repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Length = 306
Score = 336 bits (864), Expect = e-109
Identities = 72/313 (23%), Positives = 113/313 (36%), Gaps = 20/313 (6%)
Query: 454 RPRVP-HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPM-GPRAYHGTAVIGYNI 511
RPR H+ A+ G GS ++ + W + R +
Sbjct: 5 RPRRKKHDYRIALFG---GSQPQSCRYFNPKDYSWT---DIRCPFEKRRDAACVFWDNVV 58
Query: 512 YVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN-GQRRQ 570
Y++GG C+N V W R ++ + IY GG G
Sbjct: 59 YILGGSQLF-PIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSAL 117
Query: 571 NSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHN----CLNSCEVYDPE 626
E Y+ W M +R G IY+ GG G+N LNSCEVYDP
Sbjct: 118 YLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPA 177
Query: 627 CNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNP 686
WT + PM R + + I+ +GG NG+ + N E Y+ W V M
Sbjct: 178 TETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK 237
Query: 687 RSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGLP 746
+ +++ + GF GV + H+ Y+ +TD+W + + +
Sbjct: 238 GVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPVTSCLIC----- 292
Query: 747 NVYDYIHQHRDSL 759
V D + ++L
Sbjct: 293 -VVDTCGANEETL 304
Score = 219 bits (561), Expect = 2e-65
Identities = 56/230 (24%), Positives = 82/230 (35%), Gaps = 19/230 (8%)
Query: 40 RPRVP-HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPM-GPRAYHGTAVIGYNI 97
RPR H+ A+ G GS ++ + W + R +
Sbjct: 5 RPRRKKHDYRIALFG---GSQPQSCRYFNPKDYSWT---DIRCPFEKRRDAACVFWDNVV 58
Query: 98 YVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN-GQRRQ 156
Y++GG C+N V W R ++ + IY GG G
Sbjct: 59 YILGGSQLF-PIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSAL 117
Query: 157 NSVEKYNYTENQWSLIAPMNCMIQN---VTYN--IYVIGGFDGN----EYYNSCRCFNAV 207
E Y+ W M + V N IYV GG GN NSC ++
Sbjct: 118 YLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPA 177
Query: 208 TKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
T+ W E+ PM R +D I+A+GG NG ++VE Y+ N+
Sbjct: 178 TETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNE 227
Score = 217 bits (555), Expect = 1e-64
Identities = 51/224 (22%), Positives = 85/224 (37%), Gaps = 21/224 (9%)
Query: 48 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGFD-G 105
++ +GG S P ++ Y+ D W PR IY GG + G
Sbjct: 58 VYILGG-SQLFPIKRMDCYNVVKDSWY---SKLGPPTPRDSLAACAAEGKIYTSGGSEVG 113
Query: 106 NEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQ----NSVEK 161
N C++ T+ W M +RC +IY GG G NS E
Sbjct: 114 NSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEV 173
Query: 162 YNYTENQWSLIAPMN------CMIQNVTYN--IYVIGGFDGNEYYNSCRCFNAVTKVWKE 213
Y+ W+ + PM + V I+ +GG +G ++ ++ WK
Sbjct: 174 YDPATETWTELCPMIEARKNHGL---VFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM 230
Query: 214 IAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
++PM +K V A ++Y + G+ G R + +YN ++
Sbjct: 231 VSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDK 274
Score = 183 bits (466), Expect = 3e-52
Identities = 54/208 (25%), Positives = 79/208 (37%), Gaps = 23/208 (11%)
Query: 48 LFAIGGW-SGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGFDG 105
++ GG G S E YDTR + W M R HG IYV GG G
Sbjct: 104 IYTSGGSEVGNSALYLFECYDTRTESWHT---KPSMLTQRCSHGMVEANGLIYVCGGSLG 160
Query: 106 N----EYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEK 161
N NSC ++ T+ W E+ PM R +D I+A+GG NG ++VE
Sbjct: 161 NNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEY 220
Query: 162 YNYTENQWSLIAPMN--------CMIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKVWKE 213
Y+ N+W +++PM + + +YV+ GF G +N T W
Sbjct: 221 YDIKLNEWKMVSPMPWKGVTVKCAAVGS---IVYVLAGFQGVGRLGHILEYNTETDKWVA 277
Query: 214 IAPMNFKRCYVSTAVHQDVIYAMGGYNG 241
+ + V+ G
Sbjct: 278 NSKVRAFPVTSCLIC---VVDTCGANEE 302
Score = 140 bits (354), Expect = 6e-37
Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 12/156 (7%)
Query: 48 LFAIGGWSGGSPTDF----VETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGG 102
++ GG G + + E YD + W ++ PM R HG + I+ +GG
Sbjct: 152 IYVCGGSLGNNVSGRVLNSCEVYDPATETWT---ELCPMIEARKNHGLVFVKDKIFAVGG 208
Query: 103 FDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKY 162
+G ++ ++ WK ++PM +K V A ++Y + G+ G R + +Y
Sbjct: 209 QNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEY 268
Query: 163 NYTENQWSLIAPMNCMIQN---VTYNIYVIGGFDGN 195
N ++W + + + + G +
Sbjct: 269 NTETDKWVANSKVRAFPVTSCLICV-VDTCGANEET 303
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding,
invasion and metastasis, UBL conjugation pathway, UBL
protein folding; 2.00A {Rattus norvegicus}
Length = 318
Score = 319 bits (820), Expect = e-103
Identities = 60/317 (18%), Positives = 115/317 (36%), Gaps = 31/317 (9%)
Query: 454 RPRVP---HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYN 510
PR +++ + + YD + + PR +
Sbjct: 7 IPRHGMFVKDLILLVNDTA-------AVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQ 58
Query: 511 IYVIGGFDGNEY------YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGY 564
+YV+GG +E + + V+ W + P+ RC D IY + G
Sbjct: 59 VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGK 118
Query: 565 N--GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGG-FNGHNCLNSCE 621
+ + +SV Y+ +WS + + ++ + + G IY GG + C N
Sbjct: 119 DLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVF 178
Query: 622 VYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVP 681
+Y+P+ W + PM+ RS + I + GG + E ++ T W +
Sbjct: 179 IYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMT 238
Query: 682 DMYNPRSNFAIEVIDDMIFAIGGFNGV---------TTIYHVECYDEKTDEWYEATDMNI 732
+ RS+ ++ + ++AIGGF + T + + Y++ EW
Sbjct: 239 EFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLKEI- 297
Query: 733 YRSALSACVIMGLPNVY 749
R A A + N++
Sbjct: 298 -RYASGASCLATRLNLF 313
Score = 256 bits (655), Expect = 8e-79
Identities = 59/264 (22%), Positives = 97/264 (36%), Gaps = 26/264 (9%)
Query: 462 LFAIGGWSGG------SPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVI 514
++ +GG + D + WV + P+ R G + IYV+
Sbjct: 59 VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV---GLPPLPSARCLFGLGEVDDKIYVV 115
Query: 515 GGFD--GNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGY-NGQRRQN 571
G D +S C++ V W E+ + K + H +IY +GG + ++ N
Sbjct: 116 AGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTN 175
Query: 572 SVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWT 631
V YN + W +APM RS +GKI I GG S E +D + N+W
Sbjct: 176 RVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235
Query: 632 LIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNG---------EKYNPVTKTWSQVPD 682
++ RS +S ++ +Y IGGF + KY K W+ +
Sbjct: 236 VMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLK 295
Query: 683 MYNPRSNFAIEVIDDMI--FAIGG 704
R + + F +
Sbjct: 296 E--IRYASGASCLATRLNLFKLSK 317
Score = 214 bits (547), Expect = 2e-63
Identities = 48/235 (20%), Positives = 86/235 (36%), Gaps = 25/235 (10%)
Query: 40 RPRVP---HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYN 96
PR +++ + + YD + + PR +
Sbjct: 7 IPRHGMFVKDLILLVNDTA-------AVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQ 58
Query: 97 IYVIGGFDGNEY------YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGY 150
+YV+GG +E + + V+ W + P+ RC D IY + G
Sbjct: 59 VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGK 118
Query: 151 N--GQRRQNSVEKYNYTENQWSLIAPMNCMIQN---VTYN--IYVIGG-FDGNEYYNSCR 202
+ + +SV Y+ +WS + + + +++N IY +GG D + N
Sbjct: 119 DLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVF 178
Query: 203 CFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
+N WK++APM R A+H+ I GG SVE ++ N+
Sbjct: 179 IYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNK 233
Score = 204 bits (520), Expect = 2e-59
Identities = 48/237 (20%), Positives = 87/237 (36%), Gaps = 33/237 (13%)
Query: 48 LFAIGGWSGG------SPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVI 100
++ +GG + D + WV + P+ R G + IYV+
Sbjct: 59 VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV---GLPPLPSARCLFGLGEVDDKIYVV 115
Query: 101 GGFD--GNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGY-NGQRRQN 157
G D +S C++ V W E+ + K + H +IY +GG + ++ N
Sbjct: 116 AGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTN 175
Query: 158 SVEKYNYTENQWSLIAPMN------CMIQNVTYN--IYVIGGFDGNEYYNSCRCFNAVTK 209
V YN + W +APM + + I + GG + S F+ T
Sbjct: 176 RVFIYNPKKGDWKDLAPMKTPRSMFGV---AIHKGKIVIAGGVTEDGLSASVEAFDLKTN 232
Query: 210 VWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQ---------NSVEKYNYTENQ 257
W+ + +R +S +YA+GG+ + + N + KY + +
Sbjct: 233 KWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289
Score = 174 bits (443), Expect = 8e-49
Identities = 42/209 (20%), Positives = 71/209 (33%), Gaps = 21/209 (10%)
Query: 48 LFAIGGW--SGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGG-F 103
++ + G + D V YD A +W + V + H IY +GG
Sbjct: 112 IYVVAGKDLQTEASLDSVLCYDPVAAKWSE---VKNLPIKVYGHNVISHNGMIYCLGGKT 168
Query: 104 DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYN 163
D + N +N WK++APM R A+H+ I GG SVE ++
Sbjct: 169 DDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFD 228
Query: 164 YTENQWSLIAPMNCMIQN---VTYN--IYVIGGFDGNEYY---------NSCRCFNAVTK 209
N+W ++ + V+ +Y IGGF + N + K
Sbjct: 229 LKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288
Query: 210 VWKEIAPMNFKRCYVSTAVHQDVIYAMGG 238
W + S + ++ +
Sbjct: 289 EWAGMLKEIRYASGASCLATRLNLFKLSK 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding,
cytoskeleton; 1.78A {Homo sapiens}
Length = 315
Score = 311 bits (798), Expect = 1e-99
Identities = 63/309 (20%), Positives = 108/309 (34%), Gaps = 29/309 (9%)
Query: 459 HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFD 518
+++F I YD A+ P+ + ++V GG
Sbjct: 4 QDLIFMISEEG-------AVAYDPAANECYCASL-SSQVPKNHVSLVTKENQVFVAGGLF 55
Query: 519 GNEY------YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGY---NGQRR 569
NE F+ + W + P+ RC + IY +GG +G+R
Sbjct: 56 YNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERC 115
Query: 570 QNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFN-GHNCLNSCEVYDPECN 628
+SV Y+ +W P+ + + +Y+ GG CLN VYDP+
Sbjct: 116 LDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175
Query: 629 QWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRS 688
+W + PM+ RS + I V G + E Y+ W+ RS
Sbjct: 176 EWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERS 235
Query: 689 NFAIEVIDDMIFAIGGFNGV---------TTIYHVECYDEKTDEWYEATDMNIYRSALSA 739
+ ++ + ++AIGGF + T + + Y+E+ +W A A
Sbjct: 236 SLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREI--AYAAGA 293
Query: 740 CVIMGLPNV 748
+ NV
Sbjct: 294 TFLPVRLNV 302
Score = 263 bits (675), Expect = 9e-82
Identities = 60/271 (22%), Positives = 101/271 (37%), Gaps = 25/271 (9%)
Query: 462 LFAIGGW------SGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVI 514
+F GG + + +D W+ + P+ PR G +IYV+
Sbjct: 48 VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL---GMPPLPSPRCLFGLGEALNSIYVV 104
Query: 515 GGF---DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN-GQRRQ 570
GG DG +S C++ ++ W E P+ + + H D++Y +GG ++
Sbjct: 105 GGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCL 164
Query: 571 NSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQW 630
N + Y+ + +W +APM RS AT G+I + G +S EVY N+W
Sbjct: 165 NKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKW 224
Query: 631 TLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNG---------EKYNPVTKTWSQVP 681
E RS +S ++ +Y IGGF + +YN K W V
Sbjct: 225 APFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVL 284
Query: 682 DMYNPRSNFAIEVIDDMIFAIGGFNGVTTIY 712
+ + + +Y
Sbjct: 285 RE--IAYAAGATFLPVRLNVLRLTKMAENLY 313
Score = 210 bits (537), Expect = 5e-62
Identities = 49/228 (21%), Positives = 82/228 (35%), Gaps = 23/228 (10%)
Query: 45 HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFD 104
+++F I YD A+ P+ + ++V GG
Sbjct: 4 QDLIFMISEEG-------AVAYDPAANECYCASL-SSQVPKNHVSLVTKENQVFVAGGLF 55
Query: 105 GNEY------YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN---GQRR 155
NE F+ + W + P+ RC + IY +GG G+R
Sbjct: 56 YNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERC 115
Query: 156 QNSVEKYNYTENQWSLIAPMNCMIQN---VTYN--IYVIGGF-DGNEYYNSCRCFNAVTK 209
+SV Y+ +W P+ ++ +++ +YVIGG + N ++
Sbjct: 116 LDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175
Query: 210 VWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
WKE+APM R VH I G +S E Y+ T+N+
Sbjct: 176 EWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNK 223
Score = 200 bits (511), Expect = 2e-58
Identities = 47/238 (19%), Positives = 88/238 (36%), Gaps = 34/238 (14%)
Query: 48 LFAIGGW------SGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVI 100
+F GG + + +D W+ + P+ PR G +IYV+
Sbjct: 48 VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL---GMPPLPSPRCLFGLGEALNSIYVV 104
Query: 101 GGF---DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYN-GQRRQ 156
GG DG +S C++ ++ W E P+ + + H D++Y +GG ++
Sbjct: 105 GGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCL 164
Query: 157 NSVEKYNYTENQWSLIAPMN------CMIQNVTYN--IYVIGGFDGNEYYNSCRCFNAVT 208
N + Y+ + +W +APM ++ I V G +S ++
Sbjct: 165 NKMCVYDPKKFEWKELAPMQTARSLFGA---TVHDGRIIVAAGVTDTGLTSSAEVYSITD 221
Query: 209 KVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQ---------NSVEKYNYTENQ 257
W +R +S +YA+GG+ + N + +YN E +
Sbjct: 222 NKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279
Score = 184 bits (470), Expect = 1e-52
Identities = 45/214 (21%), Positives = 70/214 (32%), Gaps = 24/214 (11%)
Query: 48 LFAIGGWS---GGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGF 103
++ +GG G D V YD + +W + DP+ H +YVIGG
Sbjct: 101 IYVVGGREIKDGERCLDSVMCYDRLSFKWGE---SDPLPYVVYGHTVLSHMDLVYVIGGK 157
Query: 104 -DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKY 162
+ N ++ WKE+APM R VH I G +S E Y
Sbjct: 158 GSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVY 217
Query: 163 NYTENQWSLIAPMNCMIQN---VTYN--IYVIGGFDGNE---------YYNSCRCFNAVT 208
+ T+N+W+ + V+ +Y IGGF E N +N
Sbjct: 218 SITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEE 277
Query: 209 KVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQ 242
K W+ + + +
Sbjct: 278 KKWEGVLREI--AYAAGATFLPVRLNVLRLTKMA 309
Score = 141 bits (357), Expect = 3e-37
Identities = 31/164 (18%), Positives = 54/164 (32%), Gaps = 17/164 (10%)
Query: 48 LFAIGGW-SGGSPTDFVETYDTRADRWVKIDQVDPMG-PRAYHGTAVIGYNIYVIGGFDG 105
++ IGG S + + YD + W + + PM R+ G V I V G
Sbjct: 151 VYVIGGKGSDRKCLNKMCVYDPKKFEWKE---LAPMQTARSLFGATVHDGRIIVAAGVTD 207
Query: 106 NEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQ--------- 156
+S ++ W +R +S +YA+GG+ +
Sbjct: 208 TGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTEL 267
Query: 157 NSVEKYNYTENQWSLIAPMNCMIQNVT---YNIYVIGGFDGNEY 197
N + +YN E +W + T + V+ E
Sbjct: 268 NDIWRYNEEEKKWEGVLREIAYAAGATFLPVRLNVLRLTKMAEN 311
Score = 45.4 bits (108), Expect = 4e-05
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 10/56 (17%)
Query: 695 IDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEA-TDMNIYRSALSACVIMGLPNVY 749
+ D+IF I YD +E Y A + ++ +S V+
Sbjct: 3 LQDLIFMISEEG-------AVAYDPAANECYCASLSSQVPKNHVSLVTKEN--QVF 49
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 208 bits (531), Expect = 2e-61
Identities = 36/165 (21%), Positives = 77/165 (46%), Gaps = 1/165 (0%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWT 328
++ ++ +V +L D F + + ++ C +F+K+ NC I + + +L
Sbjct: 104 RIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKA 163
Query: 329 RKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPENRKK 388
I RNF V + EE + + + +S E+ V SEE ++E +++W+ + E R++
Sbjct: 164 ADMIRRNFHKVIQ-DEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEERER 222
Query: 389 HIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKF 433
+ L K +RL ++ + VK V + C ++ + +
Sbjct: 223 YFEELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADAVER 267
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 198 bits (506), Expect = 3e-58
Identities = 49/161 (30%), Positives = 92/161 (57%), Gaps = 2/161 (1%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWT 328
++ + ED + ++ A D ++ + LCC+F++ NC GI F+ + +
Sbjct: 96 QIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLA 155
Query: 329 RKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPENRKK 388
+Y+ +F DV+ +EE + +S Q+L+E+IS ++LNV +E V+E +IRWI +D E RK
Sbjct: 156 TEYLETHFRDVSS-TEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEIRKV 214
Query: 389 HIVSLMKNIRLGLLETEFFREKVKHHPYVQ-STPECRPIII 428
H+ +M + + L++ + RE++ + P V+ EC I +
Sbjct: 215 HMKDVMSALWVSGLDSSYLREQMLNEPLVREIVKECSNIPL 255
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid
metabolism, kelch repeat, beta-propeller; HET: MSE;
1.50A {Escherichia coli}
Length = 357
Score = 190 bits (485), Expect = 3e-54
Identities = 47/312 (15%), Positives = 95/312 (30%), Gaps = 45/312 (14%)
Query: 462 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGN- 520
++ G +G + + + +W + P GPR +A I N+YV GG N
Sbjct: 22 VYIGLGSAGTA--WYKLDTQAKDKKWTALAAF-PGGPRDQATSAFIDGNLYVFGGIGKNS 78
Query: 521 ----EYYNSCRCFNAVTKVWKEIAPMN-FKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEK 575
+ +N +N T W ++ T VH Y GG N E
Sbjct: 79 EGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFED 138
Query: 576 YNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEP 635
N + I +N Y + +DP QW+
Sbjct: 139 LNEAGKDSTAIDKINAH-------------YFDKKAEDYFFNKFLLSFDPSTQQWSYAGE 185
Query: 636 M-RHRRSGVSCIAYHECIYVIGGFNGMSRMCN---GEKYNPVTKTWSQVPDMYNPRS--N 689
+ +G + + + ++I G + + W+++ + +P
Sbjct: 186 SPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG 245
Query: 690 FAIEVIDDMIFAIGGFN-----------------GVTTIYHVECYDEKTDEWYEATDMNI 732
+ +D + GG G+ Y + + +W ++ +++
Sbjct: 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ 305
Query: 733 YRSALSACVIMG 744
R+ +
Sbjct: 306 GRAYGVSLPWNN 317
Score = 165 bits (420), Expect = 3e-45
Identities = 47/260 (18%), Positives = 79/260 (30%), Gaps = 28/260 (10%)
Query: 498 PRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPM-NFKRCYVSTAVHQD 556
P A+ +Y+ G G +Y A K W +A R ++A
Sbjct: 9 PFKSGTGAIDNDTVYIGLGSAGTAWY--KLDTQAKDKKWTALAAFPGGPRDQATSAFIDG 66
Query: 557 VIYAMGGYNGQRRQ-----NSVEKYNYTENQWSLIAPMN-VERSDASATTLQGKIYITGG 610
+Y GG N V KYN N W + + + GK Y+TGG
Sbjct: 67 NLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGG 126
Query: 611 FNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKY 670
N + E + T I+ + Y FN +
Sbjct: 127 VNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDY--------FFNK-----FLLSF 173
Query: 671 NPVTKTWSQVPDM-YNPRSNFAIEVIDDMIFAIGGF--NGVTTIY-HVECYDEKTDEWYE 726
+P T+ WS + + + A+ D + I G G+ T + +W +
Sbjct: 174 DPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNK 233
Query: 727 ATDMNI--YRSALSACVIMG 744
++ + A +
Sbjct: 234 LAPVSSPDGVAGGFAGISND 253
Score = 156 bits (395), Expect = 5e-42
Identities = 43/275 (15%), Positives = 81/275 (29%), Gaps = 44/275 (16%)
Query: 462 LFAIGGWSGGS-----PTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGG 516
L+ GG S + V Y+ + + WVK+ PM A H T V YV GG
Sbjct: 68 LYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPM-GMAGHVTFVHNGKAYVTGG 126
Query: 517 FDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKY 576
+ N + N K I +N +N + +
Sbjct: 127 VNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED--------YFFN-----KFLLSF 173
Query: 577 NYTENQWSLIAPMNVE-RSDASATTLQGKIYITGGFNGHNCLNSCEVY----DPECNQWT 631
+ + QWS + A+ K ++ G L + V+ +W
Sbjct: 174 DPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPG-LRTDAVFELDFTGNNLKWN 232
Query: 632 LI--EPMRHRRSGVSCIAYHECIYVIGGFN-----------------GMSRMCNGEKYNP 672
+ +G ++ + GG G+ + + + +
Sbjct: 233 KLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLW 292
Query: 673 VTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNG 707
W + ++ R+ ++ + IGG
Sbjct: 293 HNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETA 327
Score = 150 bits (380), Expect = 6e-40
Identities = 41/220 (18%), Positives = 71/220 (32%), Gaps = 19/220 (8%)
Query: 48 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGN- 106
++ G +G + + + +W + P GPR +A I N+YV GG N
Sbjct: 22 VYIGLGSAGTA--WYKLDTQAKDKKWTALAAF-PGGPRDQATSAFIDGNLYVFGGIGKNS 78
Query: 107 ----EYYNSCRCFNAVTKVWKEIAPMN-FKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEK 161
+ +N +N T W ++ T VH Y GG N E
Sbjct: 79 EGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFED 138
Query: 162 YNYTENQWSLIAPMNCMIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFK- 220
N + I +N Y + + F+ T+ W +
Sbjct: 139 LNEAGKDSTAIDKIN--------AHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYG 190
Query: 221 RCYVSTAVHQDVIYAMGGYNGQR-RQNSVEKYNYTENQDK 259
+ D + + G R ++V + ++T N K
Sbjct: 191 TAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLK 230
Score = 149 bits (377), Expect = 1e-39
Identities = 41/215 (19%), Positives = 74/215 (34%), Gaps = 26/215 (12%)
Query: 539 IAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNY--TENQWSLIAPM-NVERSD 595
+ + A+ D +Y G G + K + + +W+ +A R
Sbjct: 3 LPETPVPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAAFPGGPRDQ 58
Query: 596 ASATTLQGKIYITGGFNGHNC-----LNSCEVYDPECNQWT-LIEPMRHRRSGVSCIAYH 649
A++ + G +Y+ GG ++ N Y+P+ N W L+ +G ++
Sbjct: 59 ATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHN 118
Query: 650 ECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVT 709
YV GG N E N K + + + + E FN
Sbjct: 119 GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED--------YFFNK-- 168
Query: 710 TIYHVECYDEKTDEWYEATDMNIYRSALSACVIMG 744
+ +D T +W A + Y +A +A V G
Sbjct: 169 ---FLLSFDPSTQQWSYAGESPWYGTAGAAVVNKG 200
Score = 126 bits (318), Expect = 1e-31
Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 9/175 (5%)
Query: 584 SLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPM-RHRRSG 642
S++ V + +YI G G + +WT + R
Sbjct: 1 SVLPETPVPFKSGTGAIDNDTVYIGLGSAGTAWY--KLDTQAKDKKWTALAAFPGGPRDQ 58
Query: 643 VSCIAYHECIYVIGGFNGMSRMCN-----GEKYNPVTKTWSQVPD-MYNPRSNFAIEVID 696
+ +YV GG S KYNP T +W ++ + V +
Sbjct: 59 ATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHN 118
Query: 697 DMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGLPNVYDY 751
+ GG N + E +E + +N + A + +
Sbjct: 119 GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF 173
Score = 120 bits (301), Expect = 2e-29
Identities = 27/243 (11%), Positives = 66/243 (27%), Gaps = 44/243 (18%)
Query: 48 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNE 107
+ GG + + E + +D + Y +
Sbjct: 121 AYVTGGVNQNIFNGYFEDLNEAGKDST---AIDKINAH------------YFDKKAEDYF 165
Query: 108 YYNSCRCFNAVTKVWKEIAPMNFK-RCYVSTAVHQDVIYAMGGYNGQR-RQNSVEKYNYT 165
+ F+ T+ W + + D + + G R ++V + ++T
Sbjct: 166 FNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFT 225
Query: 166 E--NQWSLIAPMNCMIQN-----VTYN--IYVIGG-----------------FDGNEYYN 199
+W+ +AP++ N + GG +G +
Sbjct: 226 GNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSY 285
Query: 200 SCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQ-RRQNSVEKYNYTENQD 258
S W + ++ R Y + + + +GG + +N+
Sbjct: 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKV 345
Query: 259 KIE 261
++
Sbjct: 346 TVQ 348
Score = 111 bits (280), Expect = 7e-27
Identities = 26/198 (13%), Positives = 57/198 (28%), Gaps = 25/198 (12%)
Query: 466 GGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNS 525
F+ ++D +W + P A G ++I G
Sbjct: 159 KKAEDYFFNKFLLSFDPSTQQWSYAGES-PWYGTAGAAVVNKGDKTWLINGEAKPGLRTD 217
Query: 526 ---CRCFNAVTKVWKEIAPMNFKRCYV--STAVHQDVIYAMGGYN--------------- 565
F W ++AP++ + D + GG
Sbjct: 218 AVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYA 277
Query: 566 --GQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFN-GHNCLNSCEV 622
G ++ S + + + +W ++ R+ + + I GG G + +
Sbjct: 278 HEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVL 337
Query: 623 YDPECNQWTLIEPMRHRR 640
+ N+ T ++ + H
Sbjct: 338 ITVKDNKVT-VQNLEHHH 354
Score = 101 bits (254), Expect = 2e-23
Identities = 26/147 (17%), Positives = 44/147 (29%), Gaps = 18/147 (12%)
Query: 125 IAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNY--TENQWSLIAPMN----CM 178
+ + A+ D +Y G G + K + + +W+ +A
Sbjct: 3 LPETPVPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAAFPGGPRDQ 58
Query: 179 IQNVTYN--IYVIGGFDGN-----EYYNSCRCFNAVTKVWKEIAPMN-FKRCYVSTAVHQ 230
+ + +YV GG N + +N +N T W ++ T VH
Sbjct: 59 ATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHN 118
Query: 231 DVIYAMGGYNGQRRQNSVEKYNYTENQ 257
Y GG N E N
Sbjct: 119 GKAYVTGGVNQNIFNGYFEDLNEAGKD 145
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 105
Score = 109 bits (274), Expect = 1e-28
Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 305 TPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELN 364
NC ++ + H +L + + + +EE + + + L +IIS
Sbjct: 9 QVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQ-NTEEFLHLPHRLLTDIISDG--- 64
Query: 365 VKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRL 399
V + E I WI+++ E R+ SL +++
Sbjct: 65 VPCSQNPTEAIEAWINFNKEEREAFAESLRTSLKE 99
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A
{Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Length = 695
Score = 114 bits (287), Expect = 2e-26
Identities = 48/371 (12%), Positives = 106/371 (28%), Gaps = 41/371 (11%)
Query: 370 TVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIE 429
+++ + D + + + L + ++ T
Sbjct: 308 DMFQ-LWESADEATKKELLKVEPFDELEEFHLFCHHYVLCHATNYKEFAFTQGFLFDRSI 366
Query: 430 TFKFLYDLELIAQIDGEVPTPEI-ARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWV 488
+ L E ++ E P V +F +GG + + ++ D+
Sbjct: 367 SEINLTVDEDYQLLECECPINRKFGDVDVAGNDVFYMGGSNPYRVNEILQ-LSIHYDKID 425
Query: 489 KIDQVDPMG----PRAYHGTAVIGYN--IYVIGGFDGNE-YYNSCRCFNAVTKVWKEIAP 541
+ R H I N + +IGG + F+ T+ W I
Sbjct: 426 MKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKS 485
Query: 542 MNFKRCY-VSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVE-------R 593
++ R + ++ + +GG ++ YN TE + + P +
Sbjct: 486 LSHTRFRHSACSLPDGNVLILGGVTEG---PAMLLYNVTEEIFKDVTPKDEFFQNSLVSA 542
Query: 594 SDASATTLQGKIYITGGFNGHNCLN-SCEVYDPECNQWT--------LIEPMRHRRSGVS 644
+ I + GGF ++ ++ + T L P+ R
Sbjct: 543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQI 602
Query: 645 CIAYHECIYVIGGFNGMSRMCNG---EKYNPVTKTWSQVPDMYNPRSNF--------AIE 693
+ ++GG + +P+++T + +P + +
Sbjct: 603 KYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVS 662
Query: 694 VIDDMIFAIGG 704
I IGG
Sbjct: 663 TSMGTIHIIGG 673
Score = 102 bits (256), Expect = 9e-23
Identities = 46/306 (15%), Positives = 96/306 (31%), Gaps = 37/306 (12%)
Query: 448 PTPEIARPRVPHEILFAIGGWSGGSPTDFVETYD-------TRADRWVKIDQVDPMGPRA 500
T E R G++ + D + ++ + D+++
Sbjct: 287 NTIESQVQRFNKL------GFAYVNVGDMFQLWESADEATKKELLKVEPFDELEEFHLFC 340
Query: 501 YHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNF--KRCYVSTAVHQDVI 558
+H N G + S N ++ R + V + +
Sbjct: 341 HHYVLCHATNYKEFAFTQGFLFDRSISEINLTVDEDYQLLECECPINRKFGDVDVAGNDV 400
Query: 559 YAMGGYNGQRRQNSVEKYNYTENQWSLI------APMNVERSDASATTL--QGKIYITGG 610
+ MGG N R N + + + ++ + + + V R + TT+ ++ + GG
Sbjct: 401 FYMGGSNPYRV-NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGG 459
Query: 611 FNGH-NCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHE-CIYVIGGFNGMSRMCNGE 668
L+ ++D + +W++I+ + H R S + + + ++GG M
Sbjct: 460 RKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAM---L 516
Query: 669 KYNPVTKTWSQVPDM-------YNPRSNFAIEVIDDMIFAIGGFNGVTTIY-HVECYDEK 720
YN + + V V I GGF TT+ +
Sbjct: 517 LYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYD 576
Query: 721 TDEWYE 726
+ E
Sbjct: 577 AENATE 582
Score = 82.5 bits (203), Expect = 3e-16
Identities = 36/266 (13%), Positives = 78/266 (29%), Gaps = 47/266 (17%)
Query: 15 ETFKFLYDLELIAQIDGEVPTPEIARPRVPH--------EILFAIGGW-SGGSPTDFVET 65
E + + I + EV + E+ R+ H L IGG +
Sbjct: 413 EILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWI 472
Query: 66 YDTRADRWVKIDQVDPMGPRAYHGTAVIGYN-IYVIGGFDGNEYYNSCRCFNAVTKVWKE 124
+D + W I + R H + + ++GG + +N +++K+
Sbjct: 473 FDMKTREWSMIKSLSH--TRFRHSACSLPDGNVLILGGVTEG---PAMLLYNVTEEIFKD 527
Query: 125 IAPMNFK-------RCYVSTAVHQDVIYAMGGYNGQRR-QNSVEKYNYTEN----QWSLI 172
+ P + V + I GG+ Q + + Y ++I
Sbjct: 528 VTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVI 587
Query: 173 APMNCMIQ-------NVTYN--IYVIGGFDGN---EYYNSCRCFNAVTKVWKEIAPMNFK 220
+ + + ++GG + + NS + +++ I
Sbjct: 588 KKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRI 647
Query: 221 RCYV--------STAVHQDVIYAMGG 238
+ I+ +GG
Sbjct: 648 WEDHSLMLAGFSLVSTSMGTIHIIGG 673
Score = 74.0 bits (181), Expect = 9e-14
Identities = 25/209 (11%), Positives = 68/209 (32%), Gaps = 31/209 (14%)
Query: 73 WVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVT------KVWKEIA 126
++ + + R + V G +++ +GG + N + + +
Sbjct: 376 DYQLLECECPINRKFGDVDVAGNDVFYMGGSNPY-RVNEILQLSIHYDKIDMKNIEVSSS 434
Query: 127 PMNFKRCYVSTAV--HQDVIYAMGGYNGQRRQ-NSVEKYNYTENQWSLIAPMN------- 176
+ R + + + +GG + + ++ +WS+I ++
Sbjct: 435 EVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHS 494
Query: 177 -CMIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFK-------RCYVSTAV 228
C + + N+ ++GG + +N +++K++ P + V
Sbjct: 495 ACSLPD--GNVLILGGVTEG---PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549
Query: 229 HQDVIYAMGGYNGQRR-QNSVEKYNYTEN 256
+ I GG+ Q + + Y
Sbjct: 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAE 578
Score = 49.7 bits (118), Expect = 3e-06
Identities = 21/138 (15%), Positives = 39/138 (28%), Gaps = 10/138 (7%)
Query: 614 HNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPV 673
+ S + + L R ++ +GG N R+ + +
Sbjct: 362 FDRSISEINLTVDEDYQLLECECPINRKFGDVDVAGNDVFYMGGSNP-YRVNEILQLSIH 420
Query: 674 TKTWSQV------PDMYNPRSNFAIEVI--DDMIFAIGGFNGVTTIYH-VECYDEKTDEW 724
++ R I ++ + IGG +D KT EW
Sbjct: 421 YDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREW 480
Query: 725 YEATDMNIYRSALSACVI 742
++ R SAC +
Sbjct: 481 SMIKSLSHTRFRHSACSL 498
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence
form, precursor of copper enzyme., oxidoreductase; 1.40A
{Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB:
1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A
2eib_A 1t2x_A 2eid_A 2wq8_A
Length = 656
Score = 103 bits (256), Expect = 8e-23
Identities = 43/311 (13%), Positives = 82/311 (26%), Gaps = 38/311 (12%)
Query: 468 WSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCR 527
++D G ++ G V+ G +
Sbjct: 212 GGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA---KKTS 268
Query: 528 CFNAVTKVWKEIAPMNFKRCYVSTAVHQD--VIYAMGGYNGQRRQNSVEKYNYTENQWSL 585
+++ + W M R Y S+A D V G ++G + + E Y+ + W+
Sbjct: 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS 328
Query: 586 IAPMNVERSDASATTLQ----GKIYITGGFNGH-----NCLNSCEVYDPECNQWTLIEPM 636
+ V + ++ G G Y
Sbjct: 329 LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKR 388
Query: 637 RHRRSGVSCI---------AYHECIYVIGGFNGMS--------RMCNGEKYNPVTKTWSQ 679
+ R A I GG + + T
Sbjct: 389 QSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA 448
Query: 680 VPDMYNPRSNF-AIEVIDDMIFAIGG------FNGVTTIYHVECYDEKTDEWYEATDMNI 732
+Y R+ ++ + D F GG F T ++ E Y + D +Y+ +I
Sbjct: 449 SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSI 508
Query: 733 YRSALSACVIM 743
R S +++
Sbjct: 509 VRVYHSISLLL 519
Score = 75.0 bits (183), Expect = 5e-14
Identities = 49/315 (15%), Positives = 86/315 (27%), Gaps = 29/315 (9%)
Query: 459 HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYN--IYVIGG 516
HE+ + G + GSP V + AD K + R A+ N +
Sbjct: 102 HEVYLSSDGTNWGSP---VASGSWFADSTTKYSNFETRPARYVRLVAITEANGQPWTSIA 158
Query: 517 FDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNS---- 572
+S W + + + Y S
Sbjct: 159 EINVFQASSYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGI 218
Query: 573 --VEKYNYTENQWSLIAPMNVERSDASATTLQ---GKIYITGGFNGHNCLNSCEVYDPEC 627
++ + S + G+I +TGG + +YD
Sbjct: 219 TLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK----KTSLYDSSS 274
Query: 628 NQWTLIEPMRHRRSGVSCIAYHE-CIYVIGG-FNGMSRMCNGEKYNPVTKTWSQVPDMYN 685
+ W M+ R S + ++ IGG ++G NGE Y+P +KTW+ +P+
Sbjct: 275 DSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKV 334
Query: 686 PRSNFAIE----VIDDMIFAIGGFNGVTTIY-----HVECYDEKTDEWYEATDMNIYRSA 736
A + D+ + G G Y + + A R
Sbjct: 335 NPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGV 394
Query: 737 LSACVIMGLPNVYDY 751
+
Sbjct: 395 APDAMCGNAVMYDAV 409
Score = 70.0 bits (170), Expect = 2e-12
Identities = 36/247 (14%), Positives = 72/247 (29%), Gaps = 42/247 (17%)
Query: 48 LFAIGG-WSGGSPTDFVETYDTRADRWVKI--DQVDPMGPRAYHGTAVIGYNIYVIGGFD 104
+F IGG WSGG E Y + W + +V+PM G + ++ G
Sbjct: 300 VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKK 359
Query: 105 GNEYY-----NSCRCFNAVTKVWKEIAPMNFKRCY---------VSTAVHQDVIYAMGGY 150
G+ + + + + K R V + I GG
Sbjct: 360 GSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS 419
Query: 151 NGQRRQNS--------VEKYNYTENQWSLIAPMN------CMIQNVTYNIYVIGG----- 191
+ ++ + + + N + + + ++ GG
Sbjct: 420 PDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI 479
Query: 192 -FDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV---HQDVIYAMGGYNGQRRQN- 246
F+ + + + + + P + R Y S ++ V GG G N
Sbjct: 480 PFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNH 539
Query: 247 -SVEKYN 252
+ +
Sbjct: 540 FDAQIFT 546
Score = 61.5 bits (148), Expect = 8e-10
Identities = 26/213 (12%), Positives = 54/213 (25%), Gaps = 28/213 (13%)
Query: 54 WSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCR 113
++D G ++ G V+ G +
Sbjct: 212 GGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA---KKTS 268
Query: 114 CFNAVTKVWKEIAPMNFKRCYVSTAVHQD--VIYAMGGYNGQRRQNSVEKYNYTENQWSL 171
+++ + W M R Y S+A D V G ++G + + E Y+ + W+
Sbjct: 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS 328
Query: 172 IAPMNCMIQNVTY---------NIYVIGGFDGNEYY-----NSCRCFNAVTKVWKEIAPM 217
+ + ++ G G+ + + + + K
Sbjct: 329 LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKR 388
Query: 218 NFKRCY---------VSTAVHQDVIYAMGGYNG 241
R V + I GG
Sbjct: 389 QSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPD 421
Score = 39.9 bits (92), Expect = 0.003
Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 11/75 (14%)
Query: 462 LFAIGGWSGG------SPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVI---GYNIY 512
F GG G +P E Y D + K Q R YH +++ G
Sbjct: 469 TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK--QNPNSIVRVYHSISLLLPDGRVFN 526
Query: 513 VIGGFDGNEYYNSCR 527
GG G+ N
Sbjct: 527 GGGGLCGDCTTNHFD 541
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 71.9 bits (177), Expect = 1e-14
Identities = 15/73 (20%), Positives = 29/73 (39%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWT 328
K + LL A D + + + + +C D + + N IL+ + H +L+
Sbjct: 97 KAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQA 156
Query: 329 RKYILRNFVDVAR 341
+I + DV
Sbjct: 157 VDFINYHATDVLE 169
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 66.1 bits (161), Expect = 8e-12
Identities = 15/71 (21%), Positives = 29/71 (40%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWT 328
K + LL A D + + + + +C D + + N IL+ + H +L+
Sbjct: 237 KAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQA 296
Query: 329 RKYILRNFVDV 339
+I + DV
Sbjct: 297 VDFINYHATDV 307
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.8 bits (152), Expect = 4e-10
Identities = 53/307 (17%), Positives = 94/307 (30%), Gaps = 126/307 (41%)
Query: 194 GNEYYNSCRCFNAVTKVWKEIAPMNFKRCY------------VSTAVHQDVIYAMGGYNG 241
G + Y + A VW A +FK Y V+ +H GG G
Sbjct: 1632 GMDLYKT---SKAAQDVWNR-ADNHFKDTYGFSILDIVINNPVNLTIH------FGGEKG 1681
Query: 242 QR-RQNSVEKYNYTENQD-KIEEKKLF----ERKLHITEDNVASLLLATDF-----FCMS 290
+R R+N + D K++ +K+F E T + LL AT F M
Sbjct: 1682 KRIREN-YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 291 KAQ------------D-------------LCC--------DFIKRLTTPRNCFGILLFSR 317
KA D L ++ ++F R
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE-----------VVFYR 1789
Query: 318 ----DHFCKKLEEWTRKY-----------------ILRNFVD-VARESEEIVFI------ 349
+ E Y L+ V+ V + + +V I
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE 1849
Query: 350 SEQELEEIISSDELNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFRE 409
++Q +++ +L ++ +TV ++ N K ++ I + L+ E
Sbjct: 1850 NQQ----YVAAGDL--RALDTVTNVL---------NFIK-----LQKIDIIELQKSLSLE 1889
Query: 410 KVKHHPY 416
+V+ H +
Sbjct: 1890 EVEGHLF 1896
Score = 53.9 bits (129), Expect = 2e-07
Identities = 70/500 (14%), Positives = 124/500 (24%), Gaps = 199/500 (39%)
Query: 268 RKLHITEDNV-ASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEE 326
R L ++ ++ LL+ T F A L ++ F K L E
Sbjct: 7 RPLTLSHGSLEHVLLVPTASF--FIASQL---------------------QEQFNKILPE 43
Query: 327 WTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDY----D 382
T E + DE T EL+ +++ Y
Sbjct: 44 PT--------------------------EGFAADDE-----PTTPAELVGKFLGYVSSLV 72
Query: 383 PENRKKHIVSLMKNIRLGLLETEFFREK-VKHHPYVQSTPECRPIIIETFKFL---YDLE 438
++ ++ L E + + H + + K L Y
Sbjct: 73 EPSKVGQFDQVLNLC-LTEFENCYLEGNDI--HALAAKLLQENDTTLVKTKELIKNY--- 126
Query: 439 LIAQIDGEVPTPEIARP------RVPHEILFAI-GGWSGGSPTDFV----ETYDT----- 482
+ A+I + P + + + L AI GG G+ D+ + Y T
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG--QGNTDDYFEELRDLYQTYHVLV 184
Query: 483 -------------------RADR----------WVKIDQVDPMGPRAYHGTAVIGYNIYV 513
A++ W ++ + Y + I +
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW--LENPSNTPDKDYLLSIPISCPL-- 240
Query: 514 IGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAMGGYNGQRRQNS 572
IG Y + + P + H Q ++ A
Sbjct: 241 IGVIQLAHYVVTAKLLG--------FTPGELRSYLKGATGHSQGLVTA------------ 280
Query: 573 VEKYNYTENQWSLIAPMNVERS--DASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQW 630
IA + S + + +I G + E Y P +
Sbjct: 281 -----------VAIAETDSWESFFVSVRKAITVLFFI--GVRCY------EAY-PNTS-- 318
Query: 631 TLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRM--CNG------EKYNPVTKTWSQVPD 682
+ P S + S M + + Y V KT S +P
Sbjct: 319 --LPPSILEDS------------LENNEGVPSPMLSISNLTQEQVQDY--VNKTNSHLPA 362
Query: 683 -------MYNPRSNFAIEVI 695
+ N N V+
Sbjct: 363 GKQVEISLVNGAKNL---VV 379
Score = 43.1 bits (101), Expect = 4e-04
Identities = 59/439 (13%), Positives = 117/439 (26%), Gaps = 182/439 (41%)
Query: 197 YYNSCRCFNAVTKVWKEIAPMNFKRCYVS---TAVHQDV--IYAM-GGYNGQRRQNSVEK 250
Y + F + S AV + + A+ GG Q + +
Sbjct: 126 YITARIMAKR-----------PFDKKSNSALFRAVGEGNAQLVAIFGG------QGNTDD 168
Query: 251 YNYTENQDKIEE-KKLFERKLHITED--NVASLLLATDFFCMSKAQDLC---CDFIKRLT 304
Y EE + L++ + D ++ L+ A+ + + ++ L
Sbjct: 169 Y--------FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 305 TPRN-------------CFGILLFSRDHF---CKKL------------------------ 324
P N C I + H+ K L
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 325 ------EEWTRKYILRNFVDVARESEEIVF--------------ISEQELEEIISSDE-- 362
+ W +F R++ ++F + LE+ + ++E
Sbjct: 281 VAIAETDSW------ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 363 ----LNVK--SEETVWELIIRWIDYDPENRKKHIVSLMKNIR-----------LGLLETE 405
L++ ++E V + + + + P ++ I SL N L L
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI-SL-VNGAKNLVVSGPPQSLYGLNLT 392
Query: 406 F---------------FRE-KVK------------HHPYVQSTPECRPIIIETFKFLY-- 435
F E K+K H + + + +
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 436 -DLEL----------IAQIDGEVP---TPEIARPRV----------PHEILFAIGGWSGG 471
D+++ + + G + I R V H + F GG SG
Sbjct: 453 KDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL 512
Query: 472 SPTDFVETYDTRADRWVKI 490
T+ + V++
Sbjct: 513 GVL----THRNKDGTGVRV 527
Score = 39.6 bits (92), Expect = 0.005
Identities = 81/612 (13%), Positives = 150/612 (24%), Gaps = 261/612 (42%)
Query: 14 IETF--KFLYDLE---LIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDT 68
+ F +L + L A++ E T + + ++ Y
Sbjct: 88 LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL-------------------IKNY-I 127
Query: 69 RADRWVKIDQVDPMGPRAYHGTAVIG-YNIYVI-GGFDGN-EYYNSCRCFNAVTKVWKEI 125
A R + D A G + I GG GN + Y ++E+
Sbjct: 128 TA-RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ-GNTDDY------------FEEL 173
Query: 126 APMNFKRCY-VSTAVHQDVIYAMGG--YNGQRRQNSVEKYNYTEN----QW--------- 169
+ Y + D+I R EK +T+ +W
Sbjct: 174 RDL-----YQTYHVLVGDLIKFSAETLSELIRTTLDAEKV-FTQGLNILEWLENPSNTPD 227
Query: 170 ---------SLIAPMNCMIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFK 220
S P+ +IQ Y + + P +
Sbjct: 228 KDYLLSIPISC--PLIGVIQLAH-------------YVVTAKLLG--------FTPGELR 264
Query: 221 RCYVSTAVH-QDVIYA----MGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLHITED 275
H Q ++ A S E ++ +
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETD--------SWE--SFFVS------------------- 295
Query: 276 NVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCF--GILLFSRDHFCKKLEEWTRKYIL 333
+ FF + + P IL S ++ E +L
Sbjct: 296 --VRKAITVLFFIGVRCYE---------AYPNTSLPPSILEDSLEN-----NEGVPSPML 339
Query: 334 RNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPENRKKHIVSL 393
I ++++++++ + ++ N + P ++ I SL
Sbjct: 340 S-----------ISNLTQEQVQDYV--NKTN---------------SHLPAGKQVEI-SL 370
Query: 394 MKNIR-----------LGLLETEFFREKVKHH------PYVQSTPECRPIIIETFKFLYD 436
N L L + K P+ + R + +FL
Sbjct: 371 -VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE-----RKLKFSN-RFL-- 421
Query: 437 LELIAQIDGEVP--TP--EIARPRVPHEILFAIGGWSGGS---PTDFVETYDTR--AD-- 485
+ P + A + +++ ++ P V YDT +D
Sbjct: 422 -----PVA--SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP---V--YDTFDGSDLR 469
Query: 486 -------------------RWVKIDQVDP-----MGPRAYHGTAVI------GYNIYVI- 514
+W Q GP G V+ G + VI
Sbjct: 470 VLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIV 529
Query: 515 -GGFDGN---EY 522
G D N +Y
Sbjct: 530 AGTLDINPDDDY 541
Score = 37.0 bits (85), Expect = 0.035
Identities = 47/298 (15%), Positives = 84/298 (28%), Gaps = 101/298 (33%)
Query: 1 YVNGKSAKL-----DHGKIETFKFLYDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWS 55
Y K+A+ D+ +T+ F I I P + I F GG
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFS-----ILDIVINNPV-NLT-------IHF--GGEK 1680
Query: 56 GGSPTDFVE--TYDTRADRWVKIDQVDPM-----------GPRAY-HGTA-------VIG 94
G + ++T D +K +++ + T ++
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 95 YNIY-VI---GGFDGN---------EYYNS--CRCFNAVTKV--WKEIAPMNFKR-CYVS 136
+ + G + EY + ++ V + + + F R +
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGEY--AALA----SLADVMSIESLVEVVFYRGMTMQ 1794
Query: 137 TAVHQDVI----YAMGGYNGQR---------RQNSVEKYNYTENQWSL-IAPMNCMIQNV 182
AV +D + Y M N R Q VE+ W + I N
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG-KRTGWLVEIV-------N- 1845
Query: 183 TYNI----YVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAM 236
YN+ YV G R + VT V I + ++ + +
Sbjct: 1846 -YNVENQQYVAAG--------DLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 29.2 bits (65), Expect = 8.2
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 23/68 (33%)
Query: 699 IFAI-GGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGLPNVYDYIHQHRD 757
+ AI GG G T Y ++E + Y+ Y V D I +
Sbjct: 156 LVAIFGGQ-GNTDDY----FEE-LRDLYQ-----TYH-----------VLVGDLIKFSAE 193
Query: 758 SLMEEKRQ 765
+L E R
Sbjct: 194 TLSELIRT 201
Score = 28.9 bits (64), Expect = 9.4
Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 33/135 (24%)
Query: 437 LELIAQ----IDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQ 492
+E++ + VP E+ R + AI P ++ A ++V
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGRSNY---GMIAIN------PGRVAASFSQEALQYV---- 1829
Query: 493 VDPMGPRAYHGTAV--IGYNI----YVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKR 546
V+ +G R G V + YN+ YV G R + VT V I
Sbjct: 1830 VERVGKRT--GWLVEIVNYNVENQQYVAAG--------DLRALDTVTNVLNFIKLQKIDI 1879
Query: 547 CYVSTAVHQDVIYAM 561
+ ++ + +
Sbjct: 1880 IELQKSLSLEEVEGH 1894
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 56.9 bits (138), Expect = 7e-10
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDH 319
L +T N +LLA + +A +LC F + + + G+
Sbjct: 84 HLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQAQSGLGQSGPSS 134
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 55.2 bits (134), Expect = 3e-09
Identities = 12/56 (21%), Positives = 23/56 (41%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKL 324
K + LL A D + + + + +C D + + N IL+ + H +L
Sbjct: 88 KAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQL 143
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.7 bits (141), Expect = 7e-09
Identities = 78/512 (15%), Positives = 135/512 (26%), Gaps = 180/512 (35%)
Query: 61 DFVET-----YDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEY---YNSC 112
FVE Y K +Q P Y ++ N+ YN
Sbjct: 81 KFVEEVLRINYKFLMSPI-KTEQRQPSMMT-------RMYIEQRDRLYNDNQVFAKYNVS 132
Query: 113 R--CFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWS 170
R + + + E+ P V +I + G G K
Sbjct: 133 RLQPYLKLRQALLELRPAK----NV-------LIDGVLGS-G--------K-------TW 165
Query: 171 LIAPMNCMIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV-- 228
+ +V + V D + W +N K C V
Sbjct: 166 VAL-------DVCLSYKVQCKMDFKIF-------------W-----LNLKNCNSPETVLE 200
Query: 229 -HQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLH----ITEDNVASLLLA 283
Q ++Y + N R + + + E ++L + K + + NV +
Sbjct: 201 MLQKLLYQIDP-NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 284 TDFFCMSKAQDLCCDFIKRLTTPRNCFGILLFSRDHFCKKLEEWTRKYILRNFVDVARES 343
F +L C K L T TR + +F+ A +
Sbjct: 260 NAF-------NLSC---KILLT----------------------TRFKQVTDFLSAATTT 287
Query: 344 EEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPENRKKHIVSLMKNIRLGLLE 403
+ L +E L+++++D P++
Sbjct: 288 HISLDHHSMTLTP-----------DEVK-SLLLKYLDCRPQDLP---------------- 319
Query: 404 TEFFREKVKHHPYVQST--PECR--PIIIETFK--FLYDLELIAQIDGEVPTPEIARPR- 456
RE + +P S R + +K L I + V P R
Sbjct: 320 ----REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 457 -----------VPHEILFAIGGWSGGSPTD---FVETYDTR--ADRWVK----------I 490
+P +L I W +D V ++ K +
Sbjct: 376 DRLSVFPPSAHIPTILLSLI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 491 D-QVDPMGPRAYHGTAVIGYNIYVIGGFDGNE 521
+ +V A H + V YNI FD ++
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPK--TFDSDD 463
Score = 33.7 bits (76), Expect = 0.34
Identities = 48/332 (14%), Positives = 87/332 (26%), Gaps = 148/332 (44%)
Query: 315 FSRDHFCKKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWEL 374
F + CK +++ + +S++E++ II S + + W L
Sbjct: 29 FVDNFDCKDVQDMPKS-----------------ILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 375 IIRWIDYDPENRKKHIVSLMKNIRLGLLETEFFREKVKHHPYVQSTPECRPIIIETFKFL 434
++++ +V +F E ++ +KFL
Sbjct: 72 ---------LSKQEEMVQ------------KFVEEVLR----------------INYKFL 94
Query: 435 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVD 494
I E R P+ Y I+Q D
Sbjct: 95 MS-----PIKTE--------QR---------------QPSMMTRMY---------IEQRD 117
Query: 495 PMGPRAYHGTAVIGYNIYVIGGFDGNEY--YNSCR--CFNAVTKVWKEIAPMNFKRCYVS 550
+ YN D + YN R + + + E+ P V
Sbjct: 118 RL------------YN-------DNQVFAKYNVSRLQPYLKLRQALLELRPAK----NV- 153
Query: 551 TAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIY-ITG 609
+I + G G K + +V S + KI+ +
Sbjct: 154 ------LIDGVLGS-G--------K-------TWVAL--DVCLSYKVQCKMDFKIFWLNL 189
Query: 610 GFNGHNCLNSCEVYDPECNQWTLIEPMRHRRS 641
NC + V + I+P RS
Sbjct: 190 K----NCNSPETVLEMLQKLLYQIDPNWTSRS 217
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 46.1 bits (110), Expect = 3e-06
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301
KL ++ +NV +L F M C
Sbjct: 85 KLSLSPENVDDVLAVATFLQMQDIITACHALKS 117
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 45.7 bits (109), Expect = 4e-06
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIKR 302
L +T N +LLA + +A +LC F +
Sbjct: 83 HLALTSGNRDQVLLAARELRVPEAVELCQSFKPK 116
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 45.7 bits (109), Expect = 4e-06
Identities = 4/37 (10%), Positives = 16/37 (43%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRLTT 305
+L + + L+ F + + + +F ++++
Sbjct: 93 RLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKVSS 129
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 44.5 bits (106), Expect = 8e-06
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301
L++ NV + A D+ + + C ++
Sbjct: 83 TLNLDSWNVKEIHQAADYLKVEEVVTKCKIKME 115
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 43.7 bits (104), Expect = 2e-05
Identities = 5/35 (14%), Positives = 15/35 (42%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIKRL 303
L +++ LL A + + ++ C ++ +
Sbjct: 86 TLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLETI 120
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 43.4 bits (103), Expect = 2e-05
Identities = 3/33 (9%), Positives = 9/33 (27%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301
+ + + L A + ++ C
Sbjct: 84 SVELQPGELRPLQEAARALGVQSLEEACWRARG 116
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 43.7 bits (104), Expect = 2e-05
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301
+L++ E N+ +++ + M D C FIK
Sbjct: 92 RLNLREGNIMAVMATAMYLQMEHVVDTCRKFIK 124
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 43.8 bits (104), Expect = 2e-05
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIK-RLTTPRN 308
KL +++DNV + +F + ++ C F+K + +
Sbjct: 98 KLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLDSTS 138
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 43.8 bits (104), Expect = 3e-05
Identities = 8/33 (24%), Positives = 20/33 (60%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301
++ + ED + ++ A D ++ + LCC+F++
Sbjct: 112 QIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLE 144
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 43.4 bits (103), Expect = 3e-05
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIK 301
KL ++++NV + +F + ++ C F+K
Sbjct: 91 KLILSKENVDEVCKCVEFLSVHNIEESCFQFLK 123
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 42.2 bits (100), Expect = 7e-05
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFI 300
L ++ NV +L A + +C D +
Sbjct: 88 TLTVSTANVGDILSAARLLEIPAVSHVCADLL 119
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 41.5 bits (98), Expect = 1e-04
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFI 300
KL ++ +N+ ++ +F M +D C F+
Sbjct: 94 KLLLSRENIREVIRCAEFLRMHNLEDSCFSFL 125
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 39.5 bits (93), Expect = 4e-04
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 269 KLHITEDNVASLLLATDFFCMSKAQDLCCDFIKR 302
++ + D V + L A + + C +F++
Sbjct: 74 EIDLEADTVLATLYAAKKYIVPALAKACVNFLET 107
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 36.7 bits (84), Expect = 0.016
Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 317 RDHFCKKLEEWTRKY---ILRNFVDVARESEEIVFISEQELEEII 358
R+ K LEEW ++ + +N ++ R +++ F + + +II
Sbjct: 113 REKAKKDLEEWNQRQSEQVEKNKIN-NRIADK-AFYQQPD-ADII 154
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex
(metalloprotease/inhibitor); HET: BSI; 1.20A {Homo
sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A
1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A*
3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A
1a86_A* 1jh1_A* 1a85_A ...
Length = 163
Score = 33.2 bits (75), Expect = 0.15
Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Query: 35 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIDQVDPMGPRAYHGTA 91
TP+++ V I A WS SP F AD + + D D +G
Sbjct: 22 TPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDGPNGIL 81
Query: 92 VI----GYNIYVIGGFDGNEYYN 110
G I FD E +
Sbjct: 82 AHAFQPGQGIGGDAHFDAEETWT 104
Score = 33.2 bits (75), Expect = 0.15
Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Query: 449 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIDQVDPMGPRAYHGTA 505
TP+++ V I A WS SP F AD + + D D +G
Sbjct: 22 TPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDGPNGIL 81
Query: 506 VI----GYNIYVIGGFDGNEYYN 524
G I FD E +
Sbjct: 82 AHAFQPGQGIGGDAHFDAEETWT 104
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo
sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A*
2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A*
3shi_A
Length = 168
Score = 33.2 bits (75), Expect = 0.18
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 35 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIDQVDPMGPRAYHGTA 91
TP++ R V H I A WS +P F + + +AD +V+ D D G
Sbjct: 21 TPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNL 80
Query: 92 VIGYN----IYVIGGFDGNEYYNS 111
+ I FD +E + +
Sbjct: 81 AHAFQPGPGIGGDAHFDEDERWTN 104
Score = 33.2 bits (75), Expect = 0.18
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 449 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIDQVDPMGPRAYHGTA 505
TP++ R V H I A WS +P F + + +AD +V+ D D G
Sbjct: 21 TPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNL 80
Query: 506 VIGYN----IYVIGGFDGNEYYNS 525
+ I FD +E + +
Sbjct: 81 AHAFQPGPGIGGDAHFDEDERWTN 104
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo
sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A*
3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A*
3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A*
3kec_A* 2d1n_A* 1fls_A* ...
Length = 168
Score = 32.8 bits (74), Expect = 0.24
Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 7/94 (7%)
Query: 35 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIDQVDPMGPRAYHGTA 91
TP++ V A WS +P +F +D AD + + D G
Sbjct: 23 TPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLL 82
Query: 92 VIGY----NIYVIGGFDGNEYYNSCRCFNAVTKV 121
+ N FD +E + S + V
Sbjct: 83 AHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFLV 116
Score = 32.8 bits (74), Expect = 0.24
Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 7/94 (7%)
Query: 449 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIDQVDPMGPRAYHGTA 505
TP++ V A WS +P +F +D AD + + D G
Sbjct: 23 TPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLL 82
Query: 506 VIGY----NIYVIGGFDGNEYYNSCRCFNAVTKV 535
+ N FD +E + S + V
Sbjct: 83 AHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFLV 116
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 31.8 bits (73), Expect = 0.50
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 348 FISEQELEEIISSDELNVKSEETVWELIIRWIDYD 382
IS +EL+ I D++ + + +++ +D +
Sbjct: 145 KISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLN 179
>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor
complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A*
Length = 167
Score = 31.6 bits (71), Expect = 0.62
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 7/86 (8%)
Query: 35 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIDQVDPMGPRAYHGTA 91
TP++ V A WS +P F +D AD + + + D G
Sbjct: 23 TPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLL 82
Query: 92 VI----GYNIYVIGGFDGNEYYNSCR 113
G + FD +E + +
Sbjct: 83 AHAFAPGTGVGGDSHFDDDELWTLGK 108
Score = 31.6 bits (71), Expect = 0.62
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 7/86 (8%)
Query: 449 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIDQVDPMGPRAYHGTA 505
TP++ V A WS +P F +D AD + + + D G
Sbjct: 23 TPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLL 82
Query: 506 VI----GYNIYVIGGFDGNEYYNSCR 527
G + FD +E + +
Sbjct: 83 AHAFAPGTGVGGDSHFDDDELWTLGK 108
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 32.0 bits (72), Expect = 0.64
Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 322 KKLEEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDY 381
++ +K+++ +A E E + I E + S + + + V EL + +
Sbjct: 154 SDTKQKGKKFLV-----IAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFW 208
Query: 382 DPENRKKHIVSLM 394
D + K + V
Sbjct: 209 DAIS-KLYYVQFF 220
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12,
complex (elastase inhibitor), acetohydroxamic acid,
hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB:
1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A
3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A*
3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Length = 159
Score = 31.3 bits (70), Expect = 0.65
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 35 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIDQVDPMGPRAYHGTA 91
TP++ R V + I A WS +P F + AD + + D G
Sbjct: 18 TPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGIL 77
Query: 92 VIGYN----IYVIGGFDGNEYYN 110
+ I FD +E++
Sbjct: 78 AHAFGPGSGIGGDAHFDEDEFWT 100
Score = 31.3 bits (70), Expect = 0.65
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 449 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIDQVDPMGPRAYHGTA 505
TP++ R V + I A WS +P F + AD + + D G
Sbjct: 18 TPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGIL 77
Query: 506 VIGYN----IYVIGGFDGNEYYN 524
+ I FD +E++
Sbjct: 78 AHAFGPGSGIGGDAHFDEDEFWT 100
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics,
structural proteomics in europe, spine, spine-2,
spine2-complexes, hydrolase; HET: NGH; NMR {Homo
sapiens}
Length = 160
Score = 30.5 bits (68), Expect = 1.2
Identities = 19/86 (22%), Positives = 26/86 (30%), Gaps = 7/86 (8%)
Query: 35 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIDQVDPMGPRAYHGTA 91
TP ++ V + A+ WS P FV AD + D D GT
Sbjct: 18 TPSMSSVEVDKAVEMALQAWSSAVPLSFVRINSGEADIMISFENGDHGDSYPFDGPRGTL 77
Query: 92 VI----GYNIYVIGGFDGNEYYNSCR 113
G + FD E +
Sbjct: 78 AHAFAPGEGLGGDTHFDNAEKWTMGT 103
Score = 30.5 bits (68), Expect = 1.2
Identities = 19/86 (22%), Positives = 26/86 (30%), Gaps = 7/86 (8%)
Query: 449 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIDQVDPMGPRAYHGTA 505
TP ++ V + A+ WS P FV AD + D D GT
Sbjct: 18 TPSMSSVEVDKAVEMALQAWSSAVPLSFVRINSGEADIMISFENGDHGDSYPFDGPRGTL 77
Query: 506 VI----GYNIYVIGGFDGNEYYNSCR 527
G + FD E +
Sbjct: 78 AHAFAPGEGLGGDTHFDNAEKWTMGT 103
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain,
catalytic domain, domain interaction., calcium,
extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Length = 365
Score = 31.5 bits (70), Expect = 1.2
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 35 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIDQVDPMGPRAYHGTA 91
TP++ R V + I A WS +P F + AD + + D G
Sbjct: 17 TPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGIL 76
Query: 92 VIGY-NIYVIGG---FDGNEYYNS 111
+ IGG FD +E++ +
Sbjct: 77 AHAFGPGSGIGGDAHFDEDEFWTT 100
Score = 31.5 bits (70), Expect = 1.2
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 449 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIDQVDPMGPRAYHGTA 505
TP++ R V + I A WS +P F + AD + + D G
Sbjct: 17 TPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGIL 76
Query: 506 VIGY-NIYVIGG---FDGNEYYNS 525
+ IGG FD +E++ +
Sbjct: 77 AHAFGPGSGIGGDAHFDEDEFWTT 100
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.1.2.1
Length = 252
Score = 30.9 bits (71), Expect = 1.3
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 17/53 (32%)
Query: 21 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGG--SPTDFVETYDTRAD 71
YDL L + V P IA SGG F+E + A+
Sbjct: 183 YDLRLTRMVAEAVGVPVIA---------------SGGAGRMEHFLEAFQAGAE 220
Score = 30.9 bits (71), Expect = 1.3
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 17/53 (32%)
Query: 435 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGG--SPTDFVETYDTRAD 485
YDL L + V P IA SGG F+E + A+
Sbjct: 183 YDLRLTRMVAEAVGVPVIA---------------SGGAGRMEHFLEAFQAGAE 220
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum
aerophilum} SCOP: c.1.2.1
Length = 253
Score = 30.9 bits (71), Expect = 1.4
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 17/53 (32%)
Query: 21 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGG--SPTDFVETYDTRAD 71
YD+ELI ++ V P IA SGG F E AD
Sbjct: 185 YDVELIRRVADSVRIPVIA---------------SGGAGRVEHFYEAAAAGAD 222
Score = 30.9 bits (71), Expect = 1.4
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 17/53 (32%)
Query: 435 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGG--SPTDFVETYDTRAD 485
YD+ELI ++ V P IA SGG F E AD
Sbjct: 185 YDVELIRRVADSVRIPVIA---------------SGGAGRVEHFYEAAAAGAD 222
>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A*
1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A*
Length = 174
Score = 30.5 bits (68), Expect = 1.5
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 7/84 (8%)
Query: 35 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHG----T 90
T ++ V + A+ W P F + AD + + + G
Sbjct: 24 TRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTL 83
Query: 91 AVIGYNIYVIGG---FDGNEYYNS 111
A +GG FD +E +
Sbjct: 84 AHAFAPGTGLGGDAHFDEDERWTD 107
Score = 30.5 bits (68), Expect = 1.5
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 7/84 (8%)
Query: 449 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHG----T 504
T ++ V + A+ W P F + AD + + + G
Sbjct: 24 TRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTL 83
Query: 505 AVIGYNIYVIGG---FDGNEYYNS 525
A +GG FD +E +
Sbjct: 84 AHAFAPGTGLGGDAHFDEDERWTD 107
>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices,
hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
g.14.1.2 g.14.1.2 g.14.1.2
Length = 425
Score = 31.0 bits (69), Expect = 1.5
Identities = 14/104 (13%), Positives = 27/104 (25%), Gaps = 3/104 (2%)
Query: 34 PTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIDQVDPMGPRAYHGT 90
+ ++ R + A WS +P F Y AD ++ + D G
Sbjct: 109 YSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGL 168
Query: 91 AVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCY 134
+ D + + V + C+
Sbjct: 169 LAHAFPPGPGIQGDAHFDDDELWSLGKGVVVPTRFGNADGAACH 212
Score = 31.0 bits (69), Expect = 1.5
Identities = 14/104 (13%), Positives = 27/104 (25%), Gaps = 3/104 (2%)
Query: 448 PTPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIDQVDPMGPRAYHGT 504
+ ++ R + A WS +P F Y AD ++ + D G
Sbjct: 109 YSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGL 168
Query: 505 AVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCY 548
+ D + + V + C+
Sbjct: 169 LAHAFPPGPGIQGDAHFDDDELWSLGKGVVVPTRFGNADGAACH 212
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV
collagenase) (92 kDa gelatinase)...; S1-prime pocket,
hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A
{Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A*
2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Length = 159
Score = 30.2 bits (67), Expect = 1.6
Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 3/73 (4%)
Query: 35 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIDQVDPMGPRAYHGTA 91
+ ++ R + A WS +P F Y AD ++ + D G
Sbjct: 20 SEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLL 79
Query: 92 VIGYNIYVIGGFD 104
+ D
Sbjct: 80 AHAFPPGPGIQGD 92
Score = 30.2 bits (67), Expect = 1.6
Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 3/73 (4%)
Query: 449 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIDQVDPMGPRAYHGTA 505
+ ++ R + A WS +P F Y AD ++ + D G
Sbjct: 20 SEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLL 79
Query: 506 VIGYNIYVIGGFD 518
+ D
Sbjct: 80 AHAFPPGPGIQGD 92
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion
protein, cobalamin, precorrin, novel fold, VIT; 2.10A
{Thermotoga maritima}
Length = 266
Score = 30.6 bits (70), Expect = 1.7
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 17/53 (32%)
Query: 21 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGG--SPTDFVETYDTRAD 71
YD E+I + P IA SGG F+E + AD
Sbjct: 187 YDTEMIRFVRPLTTLPIIA---------------SGGAGKMEHFLEAFLAGAD 224
Score = 30.6 bits (70), Expect = 1.7
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 17/53 (32%)
Query: 435 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGG--SPTDFVETYDTRAD 485
YD E+I + P IA SGG F+E + AD
Sbjct: 187 YDTEMIRFVRPLTTLPIIA---------------SGGAGKMEHFLEAFLAGAD 224
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF,
half barrel, de novo protein; 3.10A {Thermotoga
maritima} PDB: 2lle_A
Length = 237
Score = 30.6 bits (70), Expect = 1.8
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 17/53 (32%)
Query: 21 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGG--SPTDFVETYDTRAD 71
YD E+I + P IA SGG F+E + AD
Sbjct: 161 YDTEMIRFVRPLTTLPIIA---------------SGGAGKMEHFLEAFLAGAD 198
Score = 30.6 bits (70), Expect = 1.8
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 17/53 (32%)
Query: 435 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGG--SPTDFVETYDTRAD 485
YD E+I + P IA SGG F+E + AD
Sbjct: 161 YDTEMIRFVRPLTTLPIIA---------------SGGAGKMEHFLEAFLAGAD 198
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic
hypermutat protein-DNA complex, DNA mispair, cancer;
HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B*
2o8e_B* 2o8f_B*
Length = 1022
Score = 31.2 bits (71), Expect = 1.9
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 421 PECRPIIIETFKFLYDLE-LIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFV 477
P+ ++E K L DLE L+++I + I++ +S DF+
Sbjct: 464 PDKISEVVELLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFL 521
Score = 29.6 bits (67), Expect = 4.8
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 15 ETFKFLYDLE-LIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFV 63
E K L DLE L+++I + I++ +S DF+
Sbjct: 472 ELLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFL 521
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis,
lyase, phosphate-binding sites; 1.45A {Thermotoga
maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A
1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Length = 253
Score = 30.5 bits (70), Expect = 1.9
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 17/53 (32%)
Query: 21 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGG--SPTDFVETYDTRAD 71
YD E+I + P IA SGG F+E + AD
Sbjct: 182 YDTEMIRFVRPLTTLPIIA---------------SGGAGKMEHFLEAFLAGAD 219
Score = 30.5 bits (70), Expect = 1.9
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 17/53 (32%)
Query: 435 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGG--SPTDFVETYDTRAD 485
YD E+I + P IA SGG F+E + AD
Sbjct: 182 YDTEMIRFVRPLTTLPIIA---------------SGGAGKMEHFLEAFLAGAD 219
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf;
substrate channeling, amidotransferase, TIM-barrel AS A
SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae}
SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A
1ox4_A
Length = 555
Score = 30.9 bits (70), Expect = 2.1
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 14/52 (26%)
Query: 21 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETY-DTRAD 71
YDLELI + V P IA G G P F E + TRAD
Sbjct: 483 YDLELIEHVKDAVKIPVIAS-----------SG--AGVPEHFEEAFLKTRAD 521
Score = 30.9 bits (70), Expect = 2.1
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 14/52 (26%)
Query: 435 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGGSPTDFVETY-DTRAD 485
YDLELI + V P IA G G P F E + TRAD
Sbjct: 483 YDLELIEHVKDAVKIPVIAS-----------SG--AGVPEHFEEAFLKTRAD 521
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus
abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Length = 262
Score = 30.3 bits (69), Expect = 2.1
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 95 YNIYVIGGF---DGNEYYNSCRCFNA 117
+Y++ G DG+ YNS
Sbjct: 79 TGVYIVAGTAEKDGDVLYNSAVVVGP 104
Score = 30.3 bits (69), Expect = 2.1
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 184 YNIYVIGGF---DGNEYYNSCRCFNA 206
+Y++ G DG+ YNS
Sbjct: 79 TGVYIVAGTAEKDGDVLYNSAVVVGP 104
Score = 30.3 bits (69), Expect = 2.1
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 509 YNIYVIGGF---DGNEYYNSCRCFNA 531
+Y++ G DG+ YNS
Sbjct: 79 TGVYIVAGTAEKDGDVLYNSAVVVGP 104
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET:
CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Length = 165
Score = 29.8 bits (66), Expect = 2.3
Identities = 13/83 (15%), Positives = 28/83 (33%)
Query: 35 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIG 94
++ R +V + A+ WS +P F E ++ RAD + + + G I
Sbjct: 22 PWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGIL 81
Query: 95 YNIYVIGGFDGNEYYNSCRCFNA 117
+ + + +
Sbjct: 82 AHAFFPKTHREGDVHFDYDETWT 104
Score = 29.8 bits (66), Expect = 2.3
Identities = 13/83 (15%), Positives = 28/83 (33%)
Query: 449 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIG 508
++ R +V + A+ WS +P F E ++ RAD + + + G I
Sbjct: 22 PWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGIL 81
Query: 509 YNIYVIGGFDGNEYYNSCRCFNA 531
+ + + +
Sbjct: 82 AHAFFPKTHREGDVHFDYDETWT 104
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length,
metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2
b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB:
1gxd_A
Length = 631
Score = 30.3 bits (67), Expect = 3.1
Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 5/100 (5%)
Query: 35 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIDQVD--PMGPRAYHG 89
TP++ V A WS +P F +D AD + + + D P +
Sbjct: 103 TPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLL 162
Query: 90 TAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN 129
V G ++ V +V A
Sbjct: 163 AHAFAPGTGVGGDSHFDDDELWTLGEGQVVRVKYGNADGE 202
Score = 30.3 bits (67), Expect = 3.1
Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 5/100 (5%)
Query: 449 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIDQVD--PMGPRAYHG 503
TP++ V A WS +P F +D AD + + + D P +
Sbjct: 103 TPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLL 162
Query: 504 TAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMN 543
V G ++ V +V A
Sbjct: 163 AHAFAPGTGVGGDSHFDDDELWTLGEGQVVRVKYGNADGE 202
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo
protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Length = 247
Score = 29.4 bits (67), Expect = 4.4
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 17/53 (32%)
Query: 21 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGG--SPTDFVETYDTRAD 71
YD E+I + P IA SGG F+E + AD
Sbjct: 187 YDTEMIRFVRPLTTLPIIA---------------SGGAGKMEHFLEAFLRGAD 224
Score = 29.4 bits (67), Expect = 4.4
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 17/53 (32%)
Query: 435 YDLELIAQIDGEVPTPEIARPRVPHEILFAIGGWSGG--SPTDFVETYDTRAD 485
YD E+I + P IA SGG F+E + AD
Sbjct: 187 YDTEMIRFVRPLTTLPIIA---------------SGGAGKMEHFLEAFLRGAD 224
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite,
structural proteomics in europe, spine, structural
genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens}
SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Length = 450
Score = 29.5 bits (65), Expect = 5.5
Identities = 30/185 (16%), Positives = 53/185 (28%), Gaps = 11/185 (5%)
Query: 35 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIDQVDPMGPRAYHGTA 91
TP++ R V H I A WS +P F + + +AD +V+ D D G
Sbjct: 103 TPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNL 162
Query: 92 VIGYNIYVIGG----FDGNEYYNSC-RCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYA 146
+ G FD +E + + R +N E+ + ++Y
Sbjct: 163 AHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLS---HSTDIGALMYP 219
Query: 147 MGGYNGQRRQNSVEKYNYTENQWSLIAPMNCMIQNVTYNIYVIGGFDGNEYYNSCRCFNA 206
++G + + P+ + FD F
Sbjct: 220 SYTFSGDVQLAQDDIDGIQAIYGRSQNPVQPIGPQTPKACDSKLTFDAITTIRGEVMFFK 279
Query: 207 VTKVW 211
Sbjct: 280 DRFYM 284
Score = 29.1 bits (64), Expect = 6.3
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 8/99 (8%)
Query: 449 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIDQVDPMGPRAYHGTA 505
TP++ R V H I A WS +P F + + +AD +V+ D D G
Sbjct: 103 TPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNL 162
Query: 506 VIGYNIYVIGG----FDGNEYYNSC-RCFNAVTKVWKEI 539
+ G FD +E + + R +N E+
Sbjct: 163 AHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHEL 201
>3kf3_A Invertase; GH32, glycoprotein, glycosidase, hydrolase; HET: FRU
NAG; 1.90A {Schwanniomyces occidentalis} PDB: 3kf5_A*
3u75_A* 3u14_A*
Length = 509
Score = 29.0 bits (65), Expect = 7.2
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 61 DFVE--TYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEY 108
+E ++ +WV ++P P N Y +G FDG ++
Sbjct: 207 GLIEVPIENSDKSKWVMFLAINPGSPLGGS------INQYFVGDFDGFQF 250
Score = 29.0 bits (65), Expect = 7.2
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 475 DFVE--TYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEY 522
+E ++ +WV ++P P N Y +G FDG ++
Sbjct: 207 GLIEVPIENSDKSKWVMFLAINPGSPLGGS------INQYFVGDFDGFQF 250
>3qok_A Putative chitinase II; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, glycosyl hydrolases
family 18; 2.60A {Klebsiella pneumoniae subsp}
Length = 420
Score = 28.9 bits (65), Expect = 7.7
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 47 ILFAIGGWSGGSPTDFVETYDTRA 70
+L ++GGW + T ++RA
Sbjct: 110 VLLSVGGWGARGFSGAAATAESRA 133
Score = 28.9 bits (65), Expect = 7.7
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 461 ILFAIGGWSGGSPTDFVETYDTRA 484
+L ++GGW + T ++RA
Sbjct: 110 VLLSVGGWGARGFSGAAATAESRA 133
>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type -
matrix metalloproteinase, batimastat, hydroxamate
inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo
sapiens} SCOP: d.92.1.11
Length = 169
Score = 28.3 bits (62), Expect = 8.0
Identities = 21/117 (17%), Positives = 33/117 (28%), Gaps = 19/117 (16%)
Query: 35 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTR-------AD---RWVKIDQVDPMGP 84
TP++ P I A W +P F E + D + D
Sbjct: 17 TPKVGDPETRKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSPF 76
Query: 85 RAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQ 141
G Y G G+ +++S + W P + AVH+
Sbjct: 77 DGEGGFLAHAYFPG--PGIGGDTHFDSD-------EPWTLGNPNHDGNDLFLVAVHE 124
Score = 28.3 bits (62), Expect = 8.0
Identities = 21/117 (17%), Positives = 33/117 (28%), Gaps = 19/117 (16%)
Query: 449 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTR-------AD---RWVKIDQVDPMGP 498
TP++ P I A W +P F E + D + D
Sbjct: 17 TPKVGDPETRKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSPF 76
Query: 499 RAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQ 555
G Y G G+ +++S + W P + AVH+
Sbjct: 77 DGEGGFLAHAYFPG--PGIGGDTHFDSD-------EPWTLGNPNHDGNDLFLVAVHE 124
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen
degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2
d.92.1.11
Length = 255
Score = 28.3 bits (62), Expect = 9.1
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 7/82 (8%)
Query: 36 PEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIDQVDPMGPRAYHGTAV 92
P++ + V + A+ W +P F Y+ AD + + D
Sbjct: 106 PDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLA 165
Query: 93 IGYN----IYVIGGFDGNEYYN 110
Y I FD +E +
Sbjct: 166 HAYAPGPGINGDAHFDDDEQWT 187
Score = 28.3 bits (62), Expect = 9.1
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 7/82 (8%)
Query: 450 PEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRAD---RWVKIDQVDPMGPRAYHGTAV 506
P++ + V + A+ W +P F Y+ AD + + D
Sbjct: 106 PDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLA 165
Query: 507 IGYN----IYVIGGFDGNEYYN 524
Y I FD +E +
Sbjct: 166 HAYAPGPGINGDAHFDDDEQWT 187
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.428
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,445,586
Number of extensions: 839539
Number of successful extensions: 2408
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1887
Number of HSP's successfully gapped: 183
Length of query: 824
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 722
Effective length of database: 3,853,851
Effective search space: 2782480422
Effective search space used: 2782480422
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.8 bits)