RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17309
(824 letters)
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1,
KEAP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 142 bits (358), Expect = 2e-38
Identities = 102/291 (35%), Positives = 150/291 (51%), Gaps = 8/291 (2%)
Query: 455 PRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVI 514
P+V +++ GG+ S ++E Y+ W+++ D PR+ V+G +Y +
Sbjct: 1 PKVG-RLIYTAGGYFRQS-LSYLEAYNPSNGTWLRLA--DLQVPRSGLAGCVVGGLLYAV 56
Query: 515 GGFD----GNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQ 570
GG + GN ++ C+N +T W APM+ R + V IYA+GG +G
Sbjct: 57 GGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHH 116
Query: 571 NSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQW 630
NSVE+Y ++W L+APM R L +Y GGF+G N LNS E Y PE N+W
Sbjct: 117 NSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW 176
Query: 631 TLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNF 690
+I M RSG H CIY GG++G ++ + E+Y+ T+TW+ V M + RS
Sbjct: 177 RMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL 236
Query: 691 AIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACV 741
I V I+ +GG++G T + VECYD TD W E T M RS + V
Sbjct: 237 GITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 287
Score = 83.8 bits (205), Expect = 3e-18
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 5/204 (2%)
Query: 556 DVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIYITGGFN--- 612
+IY GGY Q + +E YN + W +A + V RS + + G +Y GG N
Sbjct: 5 RLIYTAGGYFRQS-LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSP 63
Query: 613 -GHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYN 671
G+ ++ + Y+P NQW+ PM R+ + IY +GG +G + E+Y
Sbjct: 64 DGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYE 123
Query: 672 PVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMN 731
P W V M R + V++ +++A+GGF+G + ECY + +EW T MN
Sbjct: 124 PERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN 183
Query: 732 IYRSALSACVIMGLPNVYDYIHQH 755
RS CV+
Sbjct: 184 TIRSGAGVCVLHNCIYAAGGYDGQ 207
Score = 80.3 bits (196), Expect = 4e-17
Identities = 71/240 (29%), Positives = 110/240 (45%), Gaps = 13/240 (5%)
Query: 41 PRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVI 100
P+V +++ GG+ S ++E Y+ W+++ D PR+ V+G +Y +
Sbjct: 1 PKVG-RLIYTAGGYFRQS-LSYLEAYNPSNGTWLRLA--DLQVPRSGLAGCVVGGLLYAV 56
Query: 101 GGF----DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQ 156
GG DGN ++ C+N +T W APM+ R + V IYA+GG +G
Sbjct: 57 GGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHH 116
Query: 157 NSVEKYNYTENQWSLIA-----PMNCMIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKVW 211
NSVE+Y ++W L+A + + + +Y +GGFDG NS C+ W
Sbjct: 117 NSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW 176
Query: 212 KEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFERKLH 271
+ I MN R V + IYA GGY+GQ + NSVE+Y+ R
Sbjct: 177 RMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL 236
Score = 74.9 bits (182), Expect = 3e-15
Identities = 66/217 (30%), Positives = 100/217 (46%), Gaps = 7/217 (3%)
Query: 48 LFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPM--GPRAYHGTAVIGYNIYVIGGFDG 105
L+A+GG + + + + PR G VI +IY +GG G
Sbjct: 53 LYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHG 112
Query: 106 NEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYT 165
++NS + W +APM +R V AV ++YA+GG++G R NS E Y
Sbjct: 113 CIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPE 172
Query: 166 ENQWSLIAPMNCMIQNVTY-----NIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFK 220
N+W +I MN + IY GG+DG + NS ++ T+ W +APM +
Sbjct: 173 RNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR 232
Query: 221 RCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 257
R + VHQ IY +GGY+G +SVE Y+ +
Sbjct: 233 RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 269
Score = 73.4 bits (178), Expect = 8e-15
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 2/128 (1%)
Query: 49 FAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEY 108
+A+GG+ G + + E Y + W R+ G V+ IY GG+DG +
Sbjct: 152 YAVGGFDGTNRLNSAECYYPERNEW--RMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQ 209
Query: 109 YNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQ 168
NS ++ T+ W +APM +R + VHQ IY +GGY+G +SVE Y+ +
Sbjct: 210 LNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 269
Query: 169 WSLIAPMN 176
WS + M
Sbjct: 270 WSEVTRMT 277
Score = 71.1 bits (172), Expect = 5e-14
Identities = 52/147 (35%), Positives = 73/147 (49%), Gaps = 5/147 (3%)
Query: 87 YHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYA 146
G AV+ +Y +GGFDG NS C+ W+ I MN R V + IYA
Sbjct: 141 GVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYA 200
Query: 147 MGGYNGQRRQNSVEKYNYTENQWSLIAPMNCMIQNVTY-----NIYVIGGFDGNEYYNSC 201
GGY+GQ + NSVE+Y+ W+ +APM + IYV+GG+DG+ + +S
Sbjct: 201 AGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSV 260
Query: 202 RCFNAVTKVWKEIAPMNFKRCYVSTAV 228
C++ T W E+ M R V AV
Sbjct: 261 ECYDPDTDTWSEVTRMTSGRSGVGVAV 287
Score = 65.7 bits (158), Expect = 4e-12
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 45 HEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFD 104
H ++A GG+ G + VE YD + W R+ G V IYV+GG+D
Sbjct: 195 HNCIYAAGGYDGQDQLNSVERYDVETETW--TFVAPMKHRRSALGITVHQGRIYVLGGYD 252
Query: 105 GNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 139
G+ + +S C++ T W E+ M R V AV
Sbjct: 253 GHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 287
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain
{Fungi (Fusarium sp.) [TaxId: 29916]}
Length = 387
Score = 96.0 bits (237), Expect = 8e-22
Identities = 49/351 (13%), Positives = 91/351 (25%), Gaps = 54/351 (15%)
Query: 449 TPEIARPRVPHEI--------LFAIGGWS------GGSPTDFVETYDTRADRWVKIDQVD 494
P I P VP + + ++D
Sbjct: 12 GPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV 71
Query: 495 PMGPRAYHGTAVIGY-NIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 553
G ++ G I V GG D + +++ + W M R Y S+A
Sbjct: 72 TKHDMFCPGISMDGNGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVARGYQSSAT 127
Query: 554 HQ--DVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQG----KIYI 607
V G ++G + + E Y+ + W+ + V + ++
Sbjct: 128 MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWL 187
Query: 608 TGGFNGH-----NCLNSCEVYDPECNQWTLIEPMRHRRS-----------------GVSC 645
G G Y + R G
Sbjct: 188 FGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKIL 247
Query: 646 IAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSN-FAIEVIDDMIFAIGG 704
Y + + + T +Y R+ ++ + D F GG
Sbjct: 248 TFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGG 307
Query: 705 ------FNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGLPNVY 749
F T ++ E Y + D +Y+ +I R S +++ V+
Sbjct: 308 QRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVF 358
Score = 77.9 bits (190), Expect = 9e-16
Identities = 27/236 (11%), Positives = 57/236 (24%), Gaps = 34/236 (14%)
Query: 531 AVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQN------SVEKYNYTENQWS 584
W + + + Y ++ + S
Sbjct: 6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS 65
Query: 585 LIAPMNVERSD---ASATTLQGKIYITGGFNGHNCLNSCEVYDPECNQWTLI--EPMRHR 639
+ + G+I +TGG + +YD + W +
Sbjct: 66 DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDMQVARG 121
Query: 640 RSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSN---------- 689
+ ++ + G ++G NGE Y+P +KTW+ +P+
Sbjct: 122 YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 181
Query: 690 ----FAIEVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACV 741
+ +F G Y + + A R +
Sbjct: 182 DNHAWLFGWKKGSVFQAGPSTA-----MNWYYTSGSGDVKSAGKRQSNRGVAPDAM 232
Score = 74.9 bits (182), Expect = 8e-15
Identities = 19/188 (10%), Positives = 51/188 (27%), Gaps = 9/188 (4%)
Query: 581 NQWSLIAPMNVERSDASATTLQGKIYITGGF------NGHNCLNSCEVYDPECNQWTLIE 634
+W + + + A+ G++ + + + +DP +
Sbjct: 9 GRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT 68
Query: 635 PMRHRRSGVSCIAYHECIYVIGGFNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNF--AI 692
+ + I G Y+ + +W PDM R A
Sbjct: 69 VTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT-SLYDSSSDSWIPGPDMQVARGYQSSAT 127
Query: 693 EVIDDMIFAIGGFNGVTTIYHVECYDEKTDEWYEATDMNIYRSALSACVIMGLPNVYDYI 752
+ G ++G + E Y + W + + + + + + ++
Sbjct: 128 MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWL 187
Query: 753 HQHRDSLM 760
+ +
Sbjct: 188 FGWKKGSV 195
Score = 74.5 bits (181), Expect = 1e-14
Identities = 28/242 (11%), Positives = 59/242 (24%), Gaps = 36/242 (14%)
Query: 467 GWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYY--- 523
WSGG E Y + W + + + +
Sbjct: 139 SWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQA 198
Query: 524 ----NSCRCFNAVTKVWKEIAPMNFKRCYVS-----------------TAVHQDVIYAMG 562
+ + + K R Y
Sbjct: 199 GPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS 258
Query: 563 GYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATT-LQGKIYITGG------FNGHN 615
++ + + N + R+ ++ G +ITGG F
Sbjct: 259 DATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 318
Query: 616 CLNSCEVYDPECNQWTLIEPMRHRRSG--VSCIAYHECIYVIGGF---NGMSRMCNGEKY 670
+ + E+Y PE + + P R +S + ++ GG + + + + +
Sbjct: 319 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIF 378
Query: 671 NP 672
P
Sbjct: 379 TP 380
Score = 70.2 bits (170), Expect = 3e-13
Identities = 20/241 (8%), Positives = 51/241 (21%), Gaps = 41/241 (17%)
Query: 53 GWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYY--- 109
WSGG E Y + W + + + +
Sbjct: 139 SWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQA 198
Query: 110 ----NSCRCFNAVTKVWKEIAPMNFKRCYVS-----------------TAVHQDVIYAMG 148
+ + + K R Y
Sbjct: 199 GPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS 258
Query: 149 GYNGQRRQNSVEKYNYTENQWSLIAPMN------CMIQNVTYNIYVIGG------FDGNE 196
++ + + N + + + ++ GG F+ +
Sbjct: 259 DATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 318
Query: 197 YYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV--HQDVIYAMGG---YNGQRRQNSVEKY 251
+ + + + P + R Y S ++ ++ GG + + +
Sbjct: 319 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIF 378
Query: 252 N 252
Sbjct: 379 T 379
Score = 55.2 bits (131), Expect = 2e-08
Identities = 13/125 (10%), Positives = 37/125 (29%), Gaps = 13/125 (10%)
Query: 52 GGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIGY--NIYVIGG------F 103
S + + T + + + T+V+ + ++ GG F
Sbjct: 255 YQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF 314
Query: 104 DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV--HQDVIYAMGG---YNGQRRQNS 158
+ + + + + + P + R Y S ++ ++ GG +
Sbjct: 315 EDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFD 374
Query: 159 VEKYN 163
+ +
Sbjct: 375 AQIFT 379
Score = 54.4 bits (129), Expect = 3e-08
Identities = 29/220 (13%), Positives = 58/220 (26%), Gaps = 35/220 (15%)
Query: 35 TPEIARPRVPHEI--------LFAIGGWS------GGSPTDFVETYDTRADRWVKIDQVD 80
P I P VP + + ++D
Sbjct: 12 GPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV 71
Query: 81 PMGPRAYHGTAVIGY-NIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV 139
G ++ G I V GG D + +++ + W M R Y S+A
Sbjct: 72 TKHDMFCPGISMDGNGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVARGYQSSAT 127
Query: 140 HQ--DVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNCM---------IQNVTYNIYV 188
V G ++G + + E Y+ + W+ + + + ++
Sbjct: 128 MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWL 187
Query: 189 IGGFDGNEYY-----NSCRCFNAVTKVWKEIAPMNFKRCY 223
G G+ + + + + K R
Sbjct: 188 FGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGV 227
Score = 49.8 bits (117), Expect = 9e-07
Identities = 16/220 (7%), Positives = 43/220 (19%), Gaps = 38/220 (17%)
Query: 70 ADRWVKIDQVDPMGPRAYHGTAVIGYN-IYVIGGFD------GNEYYNSCRCFNAVTKVW 122
RW + + + + ++ T +
Sbjct: 8 LGRW---GPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV 64
Query: 123 KEIAPMNFKR---CYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNCMI 179
+ K C + I GG + Y+ + + W M
Sbjct: 65 SDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDMQVAR 120
Query: 180 QNVTYNIYVIG-------GFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV---- 228
+ G + G + + ++ +K W + +
Sbjct: 121 GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR 180
Query: 229 ----------HQDVIYAMGGYNGQRRQNSVEKYNYTENQD 258
+ ++ G + +
Sbjct: 181 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGK 220
Score = 49.4 bits (116), Expect = 9e-07
Identities = 24/267 (8%), Positives = 58/267 (21%), Gaps = 41/267 (15%)
Query: 32 EVPTPEIARPRVPHEILFAIGG---WSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYH 88
+ I G +GG+ YD+ +D W+ +
Sbjct: 66 DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSS 125
Query: 89 GTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAV--------- 139
T G + G + G + + ++ +K W + +
Sbjct: 126 ATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHA 185
Query: 140 -----HQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMN-----------------C 177
+ ++ G + +
Sbjct: 186 WLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGK 245
Query: 178 MIQNVTYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVH-QDVIYAM 236
++ Y N + + + F R + ++ V +
Sbjct: 246 ILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFIT 305
Query: 237 GG------YNGQRRQNSVEKYNYTENQ 257
GG + + E Y ++
Sbjct: 306 GGQRRGIPFEDSTPVFTPEIYVPEQDT 332
Score = 49.4 bits (116), Expect = 9e-07
Identities = 21/157 (13%), Positives = 41/157 (26%), Gaps = 20/157 (12%)
Query: 117 AVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQRRQN------SVEKYNYTENQWS 170
W + + + Y ++ + S
Sbjct: 6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS 65
Query: 171 LIAPMN------CMIQNVTYN--IYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRC 222
C ++ N I V GG D + +++ + W M R
Sbjct: 66 DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVARG 121
Query: 223 YVSTAVHQ--DVIYAMGGYNGQRRQNSVEKYNYTENQ 257
Y S+A V G ++G + + E Y+ +
Sbjct: 122 YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158
Score = 43.3 bits (100), Expect = 9e-05
Identities = 11/78 (14%), Positives = 18/78 (23%), Gaps = 6/78 (7%)
Query: 672 PVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGF------NGVTTIYHVECYDEKTDEWY 725
P W D+ + AIE + + I +D T
Sbjct: 6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS 65
Query: 726 EATDMNIYRSALSACVIM 743
+ T + M
Sbjct: 66 DRTVTVTKHDMFCPGISM 83
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 39.3 bits (91), Expect = 3e-04
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 228 VHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEEKKLFER--------KLHITEDNVAS 279
H+ V+ A G + +++ N D + F +L++ E N+ +
Sbjct: 39 AHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMA 98
Query: 280 LLLATDFFCMSKAQDLCCDFIK 301
++ + M D C FIK
Sbjct: 99 VMATAMYLQMEHVVDTCRKFIK 120
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 38.1 bits (88), Expect = 7e-04
Identities = 9/79 (11%), Positives = 26/79 (32%), Gaps = 3/79 (3%)
Query: 228 VHQDVIYAMGGYNGQRRQNSVEKYNYTENQDKIEE---KKLFERKLHITEDNVASLLLAT 284
H+ V+ + + Y K + + + L +++ LL A
Sbjct: 42 AHRTVLACTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAA 101
Query: 285 DFFCMSKAQDLCCDFIKRL 303
+ + ++ C ++ +
Sbjct: 102 EILEIEYLEEQCLKMLETI 120
>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 163
Score = 30.6 bits (68), Expect = 0.47
Identities = 30/153 (19%), Positives = 48/153 (31%), Gaps = 12/153 (7%)
Query: 35 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIG 94
TP+++ V I A WS SP F AD + Q D + G
Sbjct: 22 TPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPF-----DG 76
Query: 95 YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQR 154
N + F + F+A A N A H+ +++G +
Sbjct: 77 PNGILAHAFQPGQGIGGDAHFDAEETWTNTSANYNL----FLVAAHE-FGHSLGLAHSSD 131
Query: 155 RQNSVEKYNYTENQWSLIAPMNCMIQNVTYNIY 187
++ NY + S + I + IY
Sbjct: 132 P-GALMYPNYAFRETSNYSLPQDDIDGIQA-IY 162
Score = 29.0 bits (64), Expect = 1.6
Identities = 27/141 (19%), Positives = 44/141 (31%), Gaps = 11/141 (7%)
Query: 449 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIG 508
TP+++ V I A WS SP F AD + Q D + G
Sbjct: 22 TPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPF-----DG 76
Query: 509 YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNGQR 568
N + F + F+A A N A H+ +++G +
Sbjct: 77 PNGILAHAFQPGQGIGGDAHFDAEETWTNTSANYNL----FLVAAHE-FGHSLGLAHSSD 131
Query: 569 RQNSVEKYNYTENQWSLIAPM 589
++ NY + S +
Sbjct: 132 P-GALMYPNYAFRETSNYSLP 151
>d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens),
fibroblast [TaxId: 9606]}
Length = 168
Score = 29.9 bits (66), Expect = 0.84
Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 9/107 (8%)
Query: 35 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIG 94
TP++ + V + A+ W +P F Y+ AD + + + G +
Sbjct: 23 TPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVL 82
Query: 95 YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQ 141
+ Y G + + F+ + K+ N A H+
Sbjct: 83 AHAYAPGPGINGDAH-----FDDDEQWTKDTTGTNLF----LVAAHE 120
Score = 29.9 bits (66), Expect = 0.84
Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 9/107 (8%)
Query: 449 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIG 508
TP++ + V + A+ W +P F Y+ AD + + + G +
Sbjct: 23 TPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVL 82
Query: 509 YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQ 555
+ Y G + + F+ + K+ N A H+
Sbjct: 83 AHAYAPGPGINGDAH-----FDDDEQWTKDTTGTNLF----LVAAHE 120
>d1u9la_ a.60.4.2 (A:) Transcription elongation protein NusA
{Escherichia coli [TaxId: 562]}
Length = 68
Score = 27.6 bits (62), Expect = 0.92
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 13/69 (18%)
Query: 316 SRDHFCKKL---EEWTRKYILRNFVDVARESEEIVFISEQELEEIISSDELNVKSEETVW 372
+ D F K L E++ + F + EE+ ++ +EL EI D E TV
Sbjct: 4 AIDTFTKYLDIDEDFATVLVEEGFSTL----EELAYVPMKELLEIEGLD------EPTVE 53
Query: 373 ELIIRWIDY 381
L R +
Sbjct: 54 ALRERAKNA 62
>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 157
Score = 29.5 bits (65), Expect = 1.1
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 35 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTA-VI 93
TP++ R V H I A WS +P F + + +AD + + D + G +
Sbjct: 16 TPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNL 75
Query: 94 GYNIYVIGGFDGNEYYNSC 112
+ G G+ +++
Sbjct: 76 AHAFQPGPGIGGDAHFDED 94
Score = 29.5 bits (65), Expect = 1.1
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 449 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTA-VI 507
TP++ R V H I A WS +P F + + +AD + + D + G +
Sbjct: 16 TPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNL 75
Query: 508 GYNIYVIGGFDGNEYYNSC 526
+ G G+ +++
Sbjct: 76 AHAFQPGPGIGGDAHFDED 94
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 29.8 bits (65), Expect = 1.5
Identities = 19/156 (12%), Positives = 45/156 (28%), Gaps = 10/156 (6%)
Query: 603 GKIYITGGFNGHNCLNSCEVYDPECNQWTLIEPMRHRRSGVSCIAYHEC--IYVIGGFNG 660
N +Y+ N+W + ++ V+ + + V G +
Sbjct: 19 RTQIAICPNNH-----EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR 73
Query: 661 MSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGFNGVTTIYHVECYDEK 720
+ + T + V N + ++ FA+G + V +I + E ++
Sbjct: 74 NAYVWT---LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW 130
Query: 721 TDEWYEATDMNIYRSALSACVIMGLPNVYDYIHQHR 756
+ + +L L + R
Sbjct: 131 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR 166
>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43,
N-terminal domain {Bacillus sp. KSM-KP43 [TaxId:
109322]}
Length = 318
Score = 28.7 bits (62), Expect = 3.1
Identities = 12/158 (7%), Positives = 29/158 (18%), Gaps = 4/158 (2%)
Query: 66 YDTRADRWVKIDQVDPMGPRAYHGTAVIGYNIYVIGGFDGNEYYNSCRCFNAVTKVWKEI 125
+ + + + + HGT V G + G + + +
Sbjct: 46 FRGKITALYALGRTNNANDTNGHGTHVAGS----VLGNGSTNKGMAPQANLVFQSIMDSG 101
Query: 126 APMNFKRCYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNCMIQNVTYN 185
+ + T Q + Y N M
Sbjct: 102 GGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAG 161
Query: 186 IYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCY 223
G + + + ++
Sbjct: 162 NEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNI 199
>g1htr.1 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens),
progastricsin (pepsinogen C) [TaxId: 9606]}
Length = 372
Score = 28.0 bits (61), Expect = 4.9
Identities = 16/196 (8%), Positives = 43/196 (21%), Gaps = 23/196 (11%)
Query: 547 CYVSTAVHQDVIYAMGGYNGQRRQNSVEKYNYTENQWSLIAPMNVERSDASATTLQGKIY 606
Y + + Y G G +++ + N ++ G
Sbjct: 106 TYSTNGQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDG--I 163
Query: 607 ITGGFNGHNCLNSCEVYDPECNQWTLIEPM--------RHRRSGVSCIAYHECIYVIGG- 657
+ + + + + L P+ + G + G
Sbjct: 164 MGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQGSSGGAVVFGGVDSSLYTGQI 223
Query: 658 ------------FNGMSRMCNGEKYNPVTKTWSQVPDMYNPRSNFAIEVIDDMIFAIGGF 705
+ G+ ++ + D + + ++ A G
Sbjct: 224 YWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQ 283
Query: 706 NGVTTIYHVECYDEKT 721
+ V C +
Sbjct: 284 EDEYGQFLVNCNSIQN 299
>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 26.0 bits (57), Expect = 6.0
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 338 DVARESEEIVFISEQELEEIISSDELNVKSEETVWELIIRWIDYDPE 384
+ +E + + Q + II N KS + +W
Sbjct: 10 NCQQELTDDLHKQYQIVGRII--AHSNQKSAAGYPDYYCKWQGLPYS 54
>d1xuca1 d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 169
Score = 27.1 bits (59), Expect = 6.7
Identities = 24/157 (15%), Positives = 52/157 (33%), Gaps = 20/157 (12%)
Query: 35 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIG 94
TP++ V A WS +P +F +D AD + + + G + +
Sbjct: 23 TPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLL 82
Query: 95 YNIYVIGGF-DGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQDVIYAMGGYNG- 152
+ + G G+ +++ + + +K + A H+ G G
Sbjct: 83 AHAFPPGPNYGGDAHFDDDETWTSSSKGYN----------LFLVAAHE-----FGHSLGL 127
Query: 153 --QRRQNSVEKYNYTENQWSLIAPMNCMIQNVTYNIY 187
+ ++ YT S + +Q + +Y
Sbjct: 128 DHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQS-LY 163
Score = 26.7 bits (58), Expect = 8.3
Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Query: 449 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIG 508
TP++ V A WS +P +F +D AD + + + G + +
Sbjct: 23 TPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLL 82
Query: 509 YNIYVIGGF-DGNEYYNSCRCFNAVTKVW 536
+ + G G+ +++ + + +K +
Sbjct: 83 AHAFPPGPNYGGDAHFDDDETWTSSSKGY 111
>d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 159
Score = 26.8 bits (58), Expect = 6.9
Identities = 16/107 (14%), Positives = 25/107 (23%), Gaps = 8/107 (7%)
Query: 35 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIG 94
+ ++ R + A WS +P F Y AD + G G
Sbjct: 20 SEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDAD-----IVIQFGVAEHGDGYPFDG 74
Query: 95 YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQ 141
+ + F F+ A HQ
Sbjct: 75 KDGLLAHAFPPGPGIQGDAHFDDDELWSLGKGQGYS---LFLVAAHQ 118
Score = 26.8 bits (58), Expect = 6.9
Identities = 16/107 (14%), Positives = 25/107 (23%), Gaps = 8/107 (7%)
Query: 449 TPEIARPRVPHEILFAIGGWSGGSPTDFVETYDTRADRWVKIDQVDPMGPRAYHGTAVIG 508
+ ++ R + A WS +P F Y AD + G G
Sbjct: 20 SEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDAD-----IVIQFGVAEHGDGYPFDG 74
Query: 509 YNIYVIGGFDGNEYYNSCRCFNAVTKVWKEIAPMNFKRCYVSTAVHQ 555
+ + F F+ A HQ
Sbjct: 75 KDGLLAHAFPPGPGIQGDAHFDDDELWSLGKGQGYS---LFLVAAHQ 118
>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 69
Score = 25.2 bits (55), Expect = 8.0
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 353 ELEEIISSDELNVKSEETVWELIIRWIDYDPE 384
E II S +++ + + +++W + +
Sbjct: 8 VPERIIDSQRASLEDGTSQLQYLVKWRRLNYD 39
>d1kfwa1 c.1.8.5 (A:10-327,A:389-444) Psychrophilic chitinase B
{Arthrobacter sp., tad20 [TaxId: 1667]}
Length = 374
Score = 27.2 bits (59), Expect = 8.3
Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 2/87 (2%)
Query: 47 ILFAIGGWSGGSPTDFVETYDTRADRWVK--IDQVDPMGPRAYHGTAVIGYNIYVIGGFD 104
++ ++GGW+ + + V ID + G G + G D
Sbjct: 120 VMISLGGWTWSKNFSKAAATEASRQKLVSSCIDLYIKGNLPNFEGRGGAGAAAGIFDGID 179
Query: 105 GNEYYNSCRCFNAVTKVWKEIAPMNFK 131
+ + A V NFK
Sbjct: 180 IDWEWPGTNSGLAGNGVDTVNDRANFK 206
Score = 27.2 bits (59), Expect = 8.3
Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 2/87 (2%)
Query: 461 ILFAIGGWSGGSPTDFVETYDTRADRWVK--IDQVDPMGPRAYHGTAVIGYNIYVIGGFD 518
++ ++GGW+ + + V ID + G G + G D
Sbjct: 120 VMISLGGWTWSKNFSKAAATEASRQKLVSSCIDLYIKGNLPNFEGRGGAGAAAGIFDGID 179
Query: 519 GNEYYNSCRCFNAVTKVWKEIAPMNFK 545
+ + A V NFK
Sbjct: 180 IDWEWPGTNSGLAGNGVDTVNDRANFK 206
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.428
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,380,405
Number of extensions: 172376
Number of successful extensions: 581
Number of sequences better than 10.0: 1
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 54
Length of query: 824
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 731
Effective length of database: 1,130,706
Effective search space: 826546086
Effective search space used: 826546086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.5 bits)