BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17311
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 133/270 (49%), Gaps = 36/270 (13%)
Query: 56 EYDFXXXXXXXXXXXXXXRLSEVAHWSILLLEAG-PDENEV-TDVPSLAAWL-QLSKFDW 112
++D+ RL+E S+L+LEAG DEN + + P LA L S FDW
Sbjct: 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 113 QYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL-GNPGWGY 171
Y T A GYN ++PRG++LGGSS ++YM+ +RG+ D+D + ++ G+ GW +
Sbjct: 62 NYTTT----AQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117
Query: 172 DDVLPYFKKSE------DNRN------PYL-AKNRSLKLS-----NGLHD--VEAGQELG 211
D++ + +K+E DN N P + N S+ +S L D + QE
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQS 177
Query: 212 YE---NRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVN 268
E N D+ G + ++ G R S++ A+LRP + R NL + + A VTK++ +
Sbjct: 178 EEFFFNPDMGTGHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNS 237
Query: 269 PATKKAYGVQFIRHGIKQ-----TVLARRE 293
T + + + ++ TV A++E
Sbjct: 238 GTTNGLPAFRCVEYAEQEGAPTTTVCAKKE 267
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 118/277 (42%), Gaps = 37/277 (13%)
Query: 57 YDFXXXXXXXXXXXXXXRLSEVAHWSILLLEAG---PDENEVTDVPSLAAWLQLSKFDWQ 113
+DF RL+E + ++L++EAG P++ PS A L+ SK+DW
Sbjct: 7 FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWA 66
Query: 114 YKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDD 173
YKT R Y + RGK LGGSS LNY +V G++ +D WE G W +D
Sbjct: 67 YKTTMVRRD--DYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDP 124
Query: 174 VLPYFKKSED-NRNPYLAKNRSLKLSNG----LHDVEAGQELG--YEN------------ 214
++PY +KS + +P L K+ G + E E+ EN
Sbjct: 125 LVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQPL 184
Query: 215 -RDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKK 273
+I + G TI RG R + +FL V+ + N+ I H ++++N A +
Sbjct: 185 IENIYDGEMDGLTHCCDTIYRGQR---SGSFLF-VKNKPNITIVPEVHSKRLIINEADRT 240
Query: 274 AYGVQFIRHGIKQTVLARREELEVISFRTTTLSRDVI 310
GV V A EL + R LS+ V
Sbjct: 241 CKGV--------TVVTAAGNELNFFADREVILSQGVF 269
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 105/210 (50%), Gaps = 25/210 (11%)
Query: 74 RLSEVAHWSILLLEAGPDENEVTDVPSLAAW--LQLSKFDWQYKTEPTGRACLGYNQGRC 131
RLSE +LL+EAG +E D+ + AAW LQ +DW Y+TE A G
Sbjct: 35 RLSEDPDSRVLLIEAG-EEPTDPDIWNPAAWPALQGRSYDWDYRTE----AQAGTAGRAH 89
Query: 132 SWPRGKVLGGSSVLNYMLYVRGNRFDYDHW-ESLGNPGWGYDDVLPYFKKSEDN------ 184
W RG+++GGSS L+ M Y+RG+ D+ W ++ G+ WG+D++LP F+ ED+
Sbjct: 90 HWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLGGDG 149
Query: 185 ----RNP---YLAKNRSLKLSNGLHDVEAGQELGYENRD-INGEKQTGFMVAQGTIRRGS 236
P +L + L+ +EAG LG + N + G IR G
Sbjct: 150 IHGKGGPLPIHLPADEVSPLARAF--IEAGASLGLPRLEGHNSGEMIGVTPNSLNIRDGR 207
Query: 237 RCSTAKAFL-RPVRKRKNLHIAMRAHVTKI 265
R + A A+L + VR RKNL I + V ++
Sbjct: 208 RVTAADAWLTKAVRGRKNLTILTGSRVRRL 237
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 115/267 (43%), Gaps = 42/267 (15%)
Query: 55 REYDFXXXXXXXXXXXXXXRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQL--SKFDW 112
RE+D+ RLSE S+ L+EAGPD+ V +V L W++L S +DW
Sbjct: 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDW 71
Query: 113 QYKTEP--TGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWES-LGNPGW 169
Y EP G + + + R KV+GG S N + R D D WE+ G GW
Sbjct: 72 DYPIEPQENGNSFMRHA-------RAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGW 124
Query: 170 GYDDVLPYFKKSEDNRN------------PYLAKNRSLKLSNGLHDVEAGQELGYENRDI 217
+ P +K+ E N + P N K G+ ++A ++ G
Sbjct: 125 NAEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKF 184
Query: 218 NGEKQTGFMVAQGT----IRR---GSRCSTAKAFLRPVRKRKN--LHIAMRAHVTKILVN 268
N TG V G I R G+R S++ +++ P+ +++N L +RA + LV
Sbjct: 185 N----TGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRA---RQLVF 237
Query: 269 PATKKAYGVQFIRHGIKQT--VLARRE 293
A ++ GV + T + AR E
Sbjct: 238 DADRRCTGVDIVDSAFGHTHRLTARNE 264
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 115/267 (43%), Gaps = 42/267 (15%)
Query: 55 REYDFXXXXXXXXXXXXXXRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQL--SKFDW 112
RE+D+ RLSE S+ L+EAGPD+ V +V L W++L S +DW
Sbjct: 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDW 71
Query: 113 QYKTEP--TGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWES-LGNPGW 169
Y EP G + + + R KV+GG S N + R D D WE+ G GW
Sbjct: 72 DYPIEPQENGNSFMRHA-------RAKVMGGCSSHNACIAFWAPREDLDEWEAKYGATGW 124
Query: 170 GYDDVLPYFKKSEDNRN------------PYLAKNRSLKLSNGLHDVEAGQELGYENRDI 217
+ P +K+ E N + P N K G+ ++A ++ G
Sbjct: 125 NAEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKF 184
Query: 218 NGEKQTGFMVAQGT----IRR---GSRCSTAKAFLRPVRKRKN--LHIAMRAHVTKILVN 268
N TG V G I R G+R S++ +++ P+ +++N L +RA + LV
Sbjct: 185 N----TGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRA---RQLVF 237
Query: 269 PATKKAYGVQFIRHGIKQT--VLARRE 293
A ++ GV + T + AR E
Sbjct: 238 DADRRCTGVDIVDSAFGHTHRLTARNE 264
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 115/267 (43%), Gaps = 42/267 (15%)
Query: 55 REYDFXXXXXXXXXXXXXXRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQL--SKFDW 112
RE+D+ RLSE S+ L+EAGPD+ V +V L W++L S +DW
Sbjct: 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDW 71
Query: 113 QYKTEP--TGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWES-LGNPGW 169
Y EP G + + + R KV+GG S N + R D D WE+ G GW
Sbjct: 72 DYPIEPQENGNSFMRHA-------RAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGW 124
Query: 170 GYDDVLPYFKKSEDNRN------------PYLAKNRSLKLSNGLHDVEAGQELGYENRDI 217
+ P +K+ E N + P N K G+ ++A ++ G
Sbjct: 125 NAEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKF 184
Query: 218 NGEKQTGFMVAQGT----IRR---GSRCSTAKAFLRPVRKRKN--LHIAMRAHVTKILVN 268
N TG V G I R G+R S++ +++ P+ +++N L +RA + LV
Sbjct: 185 N----TGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRA---RQLVF 237
Query: 269 PATKKAYGVQFIRHGIKQT--VLARRE 293
A ++ GV + T + AR E
Sbjct: 238 DADRRCTGVDIVDSAFGHTHRLTARNE 264
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 113/257 (43%), Gaps = 42/257 (16%)
Query: 74 RLSEVAHWSILLLEAGPDENEVTDV-PSLAAWLQL--SKFDWQYKTEPTGRACLGYNQGR 130
RL+E + S+L++E+G E++ + L A+ + S D Y+T L N
Sbjct: 37 RLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYET-----VELATNNQT 91
Query: 131 CSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL-GNPGWGYDDVLPYFKKSEDNRNPYL 189
G LGGS+++N + R ++ D WE++ GN GW +D+V Y ++E R P
Sbjct: 92 ALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNA 151
Query: 190 AK-------NRSLKLSNGLHDVEAG-QELG-------------YENRDINGEKQTGFMVA 228
+ N S NG V AG ++ G E+R + +K G
Sbjct: 152 KQIAAGHYFNASCHGVNGT--VHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDP 209
Query: 229 QG------TIRRGS-RCSTAKAFLRPVRKRKNLHIAMRAHVTKILV--NPATKKAYGVQF 279
G T+ R A+ +L P +R NL + +V K+L+ N T +A GV+F
Sbjct: 210 HGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEF 269
Query: 280 IRH-GIKQTVLARREEL 295
H G V A+ E L
Sbjct: 270 GTHKGNTHNVYAKHEVL 286
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 104/274 (37%), Gaps = 39/274 (14%)
Query: 55 REYDFXXXXXXXXXXXXXXRLSEVAHWSILLLEAG---PDENEVTDVPSLAAWLQLSKFD 111
+ YD+ +L+E +L++E G ++ + + P+ + + D
Sbjct: 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVD 82
Query: 112 WQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL-GNPGWG 170
Y T P N + GK LGGS+++N + R ++ D WE + G GW
Sbjct: 83 QNYLTVPL------INNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWN 136
Query: 171 YDDVLPYFKKSEDNRNPYLAK-------NRSLKLSNG-------------------LHDV 204
+D++ Y KK+E R P A+ N + +NG L +
Sbjct: 137 WDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNT 196
Query: 205 EAGQELGYENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTK 264
+ + + + G + M+ R A+A+L P +R NL I V K
Sbjct: 197 VSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGK 256
Query: 265 ILVNPATK--KAYGVQF-IRHGIKQTVLARREEL 295
+L +A GV F + V A+ E L
Sbjct: 257 VLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVL 290
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 23/143 (16%)
Query: 135 RGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKKSED------NRNPY 188
RG+VLGG+S++N +Y R N Y S W D V ++ ED N +
Sbjct: 99 RGRVLGGTSIINAGVYARANTSIY----SASGVDWDMDLVNQTYEWVEDTIVYKPNSQSW 154
Query: 189 LAKNRSLKLSNGLHDVEAGQELGYENRDINGEKQTGFMVAQGTI-RRGSRCSTAKAFLRP 247
+ ++ L G+H N + + + G + T +G+R + + +
Sbjct: 155 QSVTKTAFLEAGVH----------PNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNK- 203
Query: 248 VRKRKNLHIAMRAHVTKILVNPA 270
NL + + A V KI+ + A
Sbjct: 204 -GNSNNLRVGVHASVEKIIFSNA 225
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 23/143 (16%)
Query: 135 RGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKKSED------NRNPY 188
RG+VLGG+S++N +Y R N Y S W D V ++ ED N +
Sbjct: 99 RGRVLGGTSIINAGVYARANTSIY----SASGVDWDMDLVNQTYEWVEDTIVYKPNSQSW 154
Query: 189 LAKNRSLKLSNGLHDVEAGQELGYENRDINGEKQTGFMVAQGTI-RRGSRCSTAKAFLRP 247
+ ++ L G+H N + + + G + T +G+R + + +
Sbjct: 155 QSVTKTAFLEAGVH----------PNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNK- 203
Query: 248 VRKRKNLHIAMRAHVTKILVNPA 270
NL + + A V KI+ + A
Sbjct: 204 -GNSNNLRVGVHASVEKIIFSNA 225
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 135 RGKVLGGSSVLNYMLYVRGN 154
RG+VLGG+S++N +Y R N
Sbjct: 99 RGRVLGGTSMINAGVYARAN 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,499,287
Number of Sequences: 62578
Number of extensions: 399580
Number of successful extensions: 872
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 850
Number of HSP's gapped (non-prelim): 13
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)