Query psy17311
Match_columns 310
No_of_seqs 304 out of 1776
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 18:46:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17311.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17311hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 7.8E-55 1.7E-59 405.8 25.6 266 40-306 39-323 (623)
2 PRK02106 choline dehydrogenase 100.0 1.7E-40 3.6E-45 320.9 23.1 244 54-307 3-268 (560)
3 TIGR01810 betA choline dehydro 100.0 4.9E-40 1.1E-44 316.0 22.0 240 58-307 1-261 (532)
4 PF00732 GMC_oxred_N: GMC oxid 100.0 1.6E-40 3.4E-45 297.2 15.1 247 57-308 1-265 (296)
5 COG2303 BetA Choline dehydroge 100.0 2.9E-39 6.3E-44 309.1 22.7 248 53-308 4-273 (542)
6 PLN02785 Protein HOTHEAD 100.0 2.7E-32 5.8E-37 262.7 20.4 233 54-307 53-296 (587)
7 TIGR02462 pyranose_ox pyranose 99.9 3E-21 6.5E-26 183.3 19.5 236 57-307 1-285 (544)
8 PRK07121 hypothetical protein; 99.7 1.3E-16 2.7E-21 152.5 18.2 64 244-308 182-247 (492)
9 PRK12845 3-ketosteroid-delta-1 99.7 7.1E-17 1.5E-21 155.8 14.1 59 247-307 225-285 (564)
10 PRK12837 3-ketosteroid-delta-1 99.7 7.2E-17 1.6E-21 154.7 13.5 64 243-308 178-243 (513)
11 PRK12835 3-ketosteroid-delta-1 99.7 1.1E-16 2.4E-21 155.3 14.1 63 245-308 219-283 (584)
12 PRK06481 fumarate reductase fl 99.7 1.6E-15 3.4E-20 145.3 20.1 59 245-306 196-257 (506)
13 PRK12844 3-ketosteroid-delta-1 99.7 3E-16 6.6E-21 151.6 14.2 62 245-308 214-277 (557)
14 PF00890 FAD_binding_2: FAD bi 99.7 7.2E-16 1.6E-20 144.4 14.3 55 245-302 147-204 (417)
15 PRK06175 L-aspartate oxidase; 99.6 4.2E-15 9.2E-20 139.6 15.6 56 243-301 133-189 (433)
16 PRK08274 tricarballylate dehyd 99.6 2.1E-15 4.5E-20 143.3 13.0 55 245-302 137-193 (466)
17 PRK06452 sdhA succinate dehydr 99.6 7.3E-15 1.6E-19 142.3 15.3 52 247-301 144-198 (566)
18 PRK07395 L-aspartate oxidase; 99.6 7.9E-15 1.7E-19 141.4 15.3 52 249-301 145-197 (553)
19 PRK07804 L-aspartate oxidase; 99.6 1.4E-14 3.1E-19 139.6 15.9 39 52-91 12-50 (541)
20 PRK08958 sdhA succinate dehydr 99.6 1.1E-14 2.4E-19 141.5 15.0 55 245-301 149-206 (588)
21 PTZ00139 Succinate dehydrogena 99.6 1.6E-14 3.4E-19 141.1 16.0 55 245-301 172-229 (617)
22 TIGR01813 flavo_cyto_c flavocy 99.6 1.8E-14 3.9E-19 135.9 15.7 63 243-307 134-199 (439)
23 PRK12834 putative FAD-binding 99.6 1.3E-14 2.8E-19 140.3 15.0 36 54-90 2-37 (549)
24 PRK12843 putative FAD-binding 99.6 2E-14 4.4E-19 139.6 15.7 62 245-308 227-290 (578)
25 PLN00128 Succinate dehydrogena 99.6 2.7E-14 5.9E-19 139.5 16.0 53 247-301 195-250 (635)
26 PRK09078 sdhA succinate dehydr 99.6 3.5E-14 7.5E-19 138.4 15.5 56 245-302 155-213 (598)
27 PRK07573 sdhA succinate dehydr 99.6 4.5E-14 9.8E-19 138.3 16.0 52 248-302 179-233 (640)
28 PLN02815 L-aspartate oxidase 99.6 4.3E-14 9.2E-19 137.1 15.6 57 244-301 161-222 (594)
29 PRK07843 3-ketosteroid-delta-1 99.6 5.4E-14 1.2E-18 136.1 15.6 60 245-306 214-275 (557)
30 PRK05945 sdhA succinate dehydr 99.6 4.4E-14 9.6E-19 137.3 14.9 52 245-299 141-194 (575)
31 PRK12839 hypothetical protein; 99.6 4.5E-14 9.7E-19 136.7 14.9 62 245-307 220-283 (572)
32 PRK12842 putative succinate de 99.6 4E-14 8.6E-19 137.6 14.2 53 245-299 220-272 (574)
33 PRK06263 sdhA succinate dehydr 99.6 8.5E-14 1.8E-18 134.5 16.4 55 245-301 140-197 (543)
34 PRK11101 glpA sn-glycerol-3-ph 99.6 4.4E-14 9.5E-19 136.4 13.5 57 248-307 158-216 (546)
35 TIGR00551 nadB L-aspartate oxi 99.6 1.3E-13 2.7E-18 131.7 16.3 98 202-302 86-189 (488)
36 PRK06134 putative FAD-binding 99.5 8.2E-14 1.8E-18 135.5 14.7 56 245-302 223-278 (581)
37 PRK08641 sdhA succinate dehydr 99.5 1.5E-13 3.3E-18 133.6 16.3 35 56-91 3-37 (589)
38 PTZ00306 NADH-dependent fumara 99.5 2.1E-13 4.6E-18 141.7 18.1 36 55-91 408-443 (1167)
39 TIGR01176 fum_red_Fp fumarate 99.5 1.7E-13 3.8E-18 132.8 15.9 98 201-301 89-195 (580)
40 PRK07057 sdhA succinate dehydr 99.5 2.5E-13 5.3E-18 132.3 16.8 53 247-301 156-211 (591)
41 PRK09231 fumarate reductase fl 99.5 1.9E-13 4.1E-18 132.8 15.7 94 202-299 91-193 (582)
42 PF01266 DAO: FAD dependent ox 99.5 1.2E-14 2.7E-19 132.5 7.1 59 244-309 152-210 (358)
43 PRK06069 sdhA succinate dehydr 99.5 1.9E-13 4.1E-18 133.0 15.3 49 249-300 148-199 (577)
44 TIGR01812 sdhA_frdA_Gneg succi 99.5 2.1E-13 4.5E-18 132.6 15.4 52 245-299 135-188 (566)
45 PRK07512 L-aspartate oxidase; 99.5 1.7E-13 3.6E-18 131.4 14.2 49 250-301 148-197 (513)
46 PRK07803 sdhA succinate dehydr 99.5 2.2E-13 4.8E-18 133.4 15.1 36 55-91 7-42 (626)
47 PRK08626 fumarate reductase fl 99.5 2.4E-13 5.1E-18 133.6 15.1 54 245-301 164-220 (657)
48 PRK08071 L-aspartate oxidase; 99.5 3.5E-13 7.5E-18 129.2 15.7 47 252-301 142-190 (510)
49 PRK08275 putative oxidoreducta 99.5 2.6E-13 5.7E-18 131.4 15.0 56 244-301 142-200 (554)
50 PRK08205 sdhA succinate dehydr 99.5 4.4E-13 9.5E-18 130.5 16.2 57 244-301 145-206 (583)
51 PRK06854 adenylylsulfate reduc 99.5 4.9E-13 1.1E-17 130.5 16.2 175 55-299 10-192 (608)
52 PRK09077 L-aspartate oxidase; 99.5 5.7E-13 1.2E-17 128.5 14.7 53 248-301 148-207 (536)
53 TIGR01811 sdhA_Bsu succinate d 99.5 6E-13 1.3E-17 129.7 14.7 49 251-301 145-196 (603)
54 PRK13800 putative oxidoreducta 99.4 1.9E-12 4.2E-17 131.7 16.5 47 252-301 156-205 (897)
55 PRK04176 ribulose-1,5-biphosph 99.4 1.1E-12 2.3E-17 114.7 12.1 57 245-303 110-174 (257)
56 PLN02661 Putative thiazole syn 99.4 1.6E-12 3.4E-17 116.8 12.3 36 55-90 91-126 (357)
57 PRK12409 D-amino acid dehydrog 99.4 1.2E-12 2.7E-17 122.3 12.1 60 245-308 203-264 (410)
58 TIGR00292 thiazole biosynthesi 99.4 2E-12 4.3E-17 112.7 12.4 36 55-91 20-55 (254)
59 COG0578 GlpA Glycerol-3-phosph 99.4 1.8E-12 3.9E-17 121.8 12.7 58 248-309 173-232 (532)
60 TIGR02061 aprA adenosine phosp 99.4 4.7E-12 1E-16 123.1 16.0 92 201-299 91-188 (614)
61 COG2081 Predicted flavoprotein 99.4 5.5E-13 1.2E-17 119.5 8.8 169 55-306 2-172 (408)
62 PRK12266 glpD glycerol-3-phosp 99.4 3E-12 6.5E-17 122.7 14.4 57 248-308 164-222 (508)
63 COG1053 SdhA Succinate dehydro 99.4 2.2E-12 4.8E-17 123.7 13.0 184 55-301 5-202 (562)
64 PRK13369 glycerol-3-phosphate 99.4 2.3E-12 5E-17 123.5 12.8 58 247-308 163-221 (502)
65 PLN02464 glycerol-3-phosphate 99.4 2.8E-12 6E-17 125.5 13.1 61 247-308 240-302 (627)
66 PRK00711 D-amino acid dehydrog 99.4 8.5E-13 1.8E-17 123.6 9.1 57 245-308 207-263 (416)
67 PF03486 HI0933_like: HI0933-l 99.4 1.4E-12 3.1E-17 120.8 10.3 89 202-305 81-170 (409)
68 TIGR01377 soxA_mon sarcosine o 99.4 5.6E-13 1.2E-17 123.2 7.2 34 57-91 1-34 (380)
69 PRK08401 L-aspartate oxidase; 99.4 7.7E-12 1.7E-16 118.8 14.6 33 57-90 2-34 (466)
70 PF01946 Thi4: Thi4 family; PD 99.4 3E-12 6.6E-17 106.1 9.6 35 55-90 16-50 (230)
71 TIGR03329 Phn_aa_oxid putative 99.4 3.6E-12 7.9E-17 120.9 11.5 38 54-91 22-60 (460)
72 PRK11728 hydroxyglutarate oxid 99.3 4.1E-12 9E-17 118.2 9.9 56 245-308 155-210 (393)
73 PRK11259 solA N-methyltryptoph 99.3 5.6E-12 1.2E-16 116.4 10.2 35 56-91 3-37 (376)
74 TIGR01373 soxB sarcosine oxida 99.3 6.5E-12 1.4E-16 117.4 10.6 55 247-307 191-245 (407)
75 COG0579 Predicted dehydrogenas 99.3 1.2E-11 2.6E-16 114.0 11.9 58 247-309 161-218 (429)
76 COG0029 NadB Aspartate oxidase 99.3 3.1E-11 6.8E-16 110.8 13.6 99 200-301 89-196 (518)
77 TIGR02485 CobZ_N-term precorri 99.3 2.2E-11 4.8E-16 114.7 12.8 99 202-307 89-190 (432)
78 TIGR01320 mal_quin_oxido malat 99.3 3.2E-11 6.9E-16 114.7 13.7 59 247-308 186-246 (483)
79 COG1635 THI4 Ribulose 1,5-bisp 99.3 2.2E-11 4.8E-16 100.6 10.7 34 56-90 30-63 (262)
80 PF12831 FAD_oxidored: FAD dep 99.3 2.1E-12 4.5E-17 121.3 5.1 54 243-299 94-147 (428)
81 PRK10157 putative oxidoreducta 99.3 2.1E-11 4.6E-16 114.6 10.0 55 241-302 110-164 (428)
82 PRK05257 malate:quinone oxidor 99.3 6.8E-11 1.5E-15 112.6 13.2 37 55-91 4-41 (494)
83 PTZ00383 malate:quinone oxidor 99.3 6.3E-11 1.4E-15 112.6 12.6 55 247-308 219-279 (497)
84 TIGR03364 HpnW_proposed FAD de 99.2 6E-11 1.3E-15 109.2 11.5 34 57-91 1-34 (365)
85 PRK10015 oxidoreductase; Provi 99.2 3.5E-11 7.6E-16 113.1 9.2 55 241-302 110-164 (429)
86 KOG2820|consensus 99.2 6.9E-11 1.5E-15 103.4 10.2 61 244-308 158-218 (399)
87 COG0644 FixC Dehydrogenases (f 99.2 6.9E-11 1.5E-15 110.0 11.1 38 55-93 2-39 (396)
88 PRK13339 malate:quinone oxidor 99.2 4.7E-10 1E-14 106.4 15.4 65 242-309 188-254 (497)
89 PTZ00363 rab-GDP dissociation 99.2 5E-10 1.1E-14 105.0 14.7 42 53-95 1-42 (443)
90 PRK05192 tRNA uridine 5-carbox 99.2 1.8E-10 3.9E-15 110.5 11.9 35 55-90 3-37 (618)
91 PRK07364 2-octaprenyl-6-methox 99.2 6.7E-10 1.4E-14 104.0 15.3 39 52-91 14-52 (415)
92 PRK13977 myosin-cross-reactive 99.2 1.3E-09 2.8E-14 103.8 16.1 55 245-299 232-290 (576)
93 COG0665 DadA Glycine/D-amino a 99.1 1.7E-10 3.6E-15 106.9 9.5 39 54-93 2-40 (387)
94 PLN02985 squalene monooxygenas 99.1 1.8E-09 3.8E-14 103.6 16.6 36 54-90 41-76 (514)
95 PRK06185 hypothetical protein; 99.1 7E-10 1.5E-14 103.6 13.5 51 250-303 120-170 (407)
96 KOG0042|consensus 99.1 2.8E-11 6E-16 111.6 3.9 82 221-307 209-292 (680)
97 COG3573 Predicted oxidoreducta 99.1 5.8E-10 1.3E-14 97.6 11.7 36 55-91 4-39 (552)
98 PRK01747 mnmC bifunctional tRN 99.1 3.9E-10 8.5E-15 111.7 11.3 34 56-90 260-293 (662)
99 PF01134 GIDA: Glucose inhibit 99.1 1E-10 2.2E-15 106.7 5.0 48 249-303 106-154 (392)
100 PRK08773 2-octaprenyl-3-methyl 99.0 2.5E-09 5.4E-14 99.5 12.7 36 55-91 5-40 (392)
101 KOG1298|consensus 99.0 4.1E-10 9E-15 100.1 6.7 51 248-302 157-208 (509)
102 TIGR02023 BchP-ChlP geranylger 99.0 2.3E-09 5E-14 99.6 11.5 32 57-89 1-32 (388)
103 PRK08244 hypothetical protein; 99.0 2.7E-09 5.8E-14 102.3 12.1 35 56-91 2-36 (493)
104 COG1233 Phytoene dehydrogenase 99.0 1.4E-09 3E-14 103.9 9.8 39 55-94 2-40 (487)
105 PF01494 FAD_binding_3: FAD bi 99.0 2.9E-10 6.2E-15 103.5 4.8 60 241-303 113-173 (356)
106 PRK06126 hypothetical protein; 99.0 5.1E-09 1.1E-13 101.6 13.1 35 55-90 6-40 (545)
107 TIGR02032 GG-red-SF geranylger 99.0 4.9E-09 1.1E-13 93.1 11.3 34 57-91 1-34 (295)
108 PLN00093 geranylgeranyl diphos 99.0 5.1E-09 1.1E-13 98.9 11.6 35 55-90 38-72 (450)
109 KOG2415|consensus 99.0 1.7E-09 3.6E-14 97.2 7.4 68 238-307 182-264 (621)
110 PRK08243 4-hydroxybenzoate 3-m 99.0 6.5E-09 1.4E-13 96.7 11.8 35 56-91 2-36 (392)
111 TIGR00275 flavoprotein, HI0933 99.0 1.5E-09 3.3E-14 101.1 7.4 31 60-91 1-31 (400)
112 PRK07045 putative monooxygenas 99.0 1.1E-08 2.3E-13 95.1 13.0 36 55-91 4-39 (388)
113 PRK06184 hypothetical protein; 98.9 7.3E-09 1.6E-13 99.5 12.0 35 56-91 3-37 (502)
114 KOG2404|consensus 98.9 4E-09 8.8E-14 91.9 8.8 48 253-302 159-207 (477)
115 TIGR02028 ChlP geranylgeranyl 98.9 8.4E-09 1.8E-13 96.1 11.5 33 57-90 1-33 (398)
116 KOG2844|consensus 98.9 4.7E-09 1E-13 99.3 9.6 56 243-305 191-246 (856)
117 PRK07333 2-octaprenyl-6-methox 98.9 1.5E-08 3.2E-13 94.5 12.7 36 56-91 1-37 (403)
118 PRK06847 hypothetical protein; 98.9 1.2E-08 2.7E-13 94.2 11.7 36 55-91 3-38 (375)
119 PRK06183 mhpA 3-(3-hydroxyphen 98.9 2E-08 4.4E-13 97.2 13.4 36 55-91 9-44 (538)
120 KOG2852|consensus 98.9 1E-09 2.3E-14 94.1 3.8 61 244-308 153-214 (380)
121 PLN02697 lycopene epsilon cycl 98.9 1.8E-08 4E-13 96.4 12.7 34 55-89 107-140 (529)
122 PRK05714 2-octaprenyl-3-methyl 98.9 2.5E-08 5.4E-13 93.2 13.0 34 56-90 2-35 (405)
123 PRK11445 putative oxidoreducta 98.9 4.7E-08 1E-12 89.6 14.6 33 57-91 2-34 (351)
124 PRK05329 anaerobic glycerol-3- 98.9 3.3E-08 7.2E-13 92.2 13.6 58 245-306 265-323 (422)
125 TIGR02360 pbenz_hydroxyl 4-hyd 98.9 1.4E-08 3E-13 94.4 11.1 35 56-91 2-36 (390)
126 COG0654 UbiH 2-polyprenyl-6-me 98.9 2.7E-08 5.8E-13 92.5 12.3 50 248-303 114-163 (387)
127 PRK05675 sdhA succinate dehydr 98.9 2.7E-08 5.9E-13 96.7 12.8 55 245-301 132-189 (570)
128 TIGR03378 glycerol3P_GlpB glyc 98.9 6.4E-08 1.4E-12 89.5 14.4 61 245-309 269-330 (419)
129 PRK08020 ubiF 2-octaprenyl-3-m 98.9 2.2E-08 4.8E-13 93.0 11.4 35 55-90 4-38 (391)
130 PRK07608 ubiquinone biosynthes 98.9 2.3E-08 4.9E-13 92.8 11.4 36 55-91 4-39 (388)
131 TIGR01988 Ubi-OHases Ubiquinon 98.9 1.2E-08 2.7E-13 94.3 9.6 34 58-92 1-34 (385)
132 PRK09126 hypothetical protein; 98.8 7.1E-08 1.5E-12 89.6 14.4 35 56-91 3-37 (392)
133 TIGR01984 UbiH 2-polyprenyl-6- 98.8 4.3E-08 9.3E-13 90.8 12.8 33 58-91 1-34 (382)
134 PRK07588 hypothetical protein; 98.8 5.1E-08 1.1E-12 90.7 13.3 32 58-90 2-33 (391)
135 PRK06617 2-octaprenyl-6-methox 98.8 4.3E-08 9.3E-13 90.6 12.7 33 57-90 2-34 (374)
136 PRK08132 FAD-dependent oxidore 98.8 5.3E-08 1.2E-12 94.5 13.2 36 54-90 21-56 (547)
137 PRK08013 oxidoreductase; Provi 98.8 3.6E-08 7.8E-13 92.0 11.5 35 56-91 3-37 (400)
138 TIGR00136 gidA glucose-inhibit 98.8 4.7E-08 1E-12 94.0 12.1 33 57-90 1-33 (617)
139 PRK06834 hypothetical protein; 98.8 5.1E-08 1.1E-12 93.2 12.4 35 56-91 3-37 (488)
140 KOG4254|consensus 98.8 2E-08 4.4E-13 91.2 8.7 55 243-303 268-322 (561)
141 PRK07190 hypothetical protein; 98.8 2.9E-08 6.2E-13 94.8 10.2 36 55-91 4-39 (487)
142 PRK08850 2-octaprenyl-6-methox 98.8 8.3E-08 1.8E-12 89.7 12.8 34 55-89 3-36 (405)
143 PF13738 Pyr_redox_3: Pyridine 98.8 1.1E-08 2.4E-13 86.0 6.1 58 242-306 85-143 (203)
144 PLN02172 flavin-containing mon 98.8 8.8E-08 1.9E-12 90.7 12.7 38 55-93 9-46 (461)
145 PLN02463 lycopene beta cyclase 98.8 6.8E-08 1.5E-12 91.0 11.8 35 55-90 27-61 (447)
146 PRK07538 hypothetical protein; 98.8 5.6E-08 1.2E-12 91.1 10.8 33 58-91 2-34 (413)
147 PRK07494 2-octaprenyl-6-methox 98.8 8.2E-08 1.8E-12 89.1 11.8 36 55-91 6-41 (388)
148 PF06039 Mqo: Malate:quinone o 98.7 5.7E-08 1.2E-12 89.4 9.9 64 242-308 185-250 (488)
149 PRK08163 salicylate hydroxylas 98.7 6.1E-08 1.3E-12 90.2 10.3 36 55-91 3-38 (396)
150 PRK08849 2-octaprenyl-3-methyl 98.7 1.1E-07 2.3E-12 88.3 11.7 34 56-90 3-36 (384)
151 COG1249 Lpd Pyruvate/2-oxoglut 98.7 1.1E-07 2.5E-12 89.2 11.6 35 55-90 3-37 (454)
152 COG3380 Predicted NAD/FAD-depe 98.7 7.1E-08 1.5E-12 82.5 9.1 33 58-91 3-35 (331)
153 PRK05732 2-octaprenyl-6-methox 98.7 7.9E-08 1.7E-12 89.4 10.1 35 55-89 2-38 (395)
154 PRK06753 hypothetical protein; 98.7 1.6E-07 3.4E-12 86.7 11.6 33 58-91 2-34 (373)
155 PRK05976 dihydrolipoamide dehy 98.7 9E-08 2E-12 91.3 10.1 35 54-89 2-36 (472)
156 PRK07236 hypothetical protein; 98.7 6.5E-07 1.4E-11 83.1 15.2 34 56-90 6-39 (386)
157 COG0445 GidA Flavin-dependent 98.7 4.6E-08 9.9E-13 91.2 6.6 35 55-90 3-37 (621)
158 PRK06467 dihydrolipoamide dehy 98.6 1.1E-07 2.4E-12 90.6 9.2 36 54-90 2-37 (471)
159 PTZ00367 squalene epoxidase; P 98.6 2.3E-07 5E-12 89.8 11.4 35 55-90 32-66 (567)
160 COG0492 TrxB Thioredoxin reduc 98.6 4E-07 8.6E-12 81.4 11.2 35 55-90 2-37 (305)
161 PRK06996 hypothetical protein; 98.6 3.8E-07 8.2E-12 85.1 11.5 37 54-90 9-48 (398)
162 TIGR01816 sdhA_forward succina 98.6 5.9E-07 1.3E-11 87.4 13.1 55 244-301 124-181 (565)
163 PRK05868 hypothetical protein; 98.6 6.6E-07 1.4E-11 82.7 12.9 33 58-91 3-35 (372)
164 TIGR01790 carotene-cycl lycope 98.6 3.2E-07 6.9E-12 85.2 10.8 32 58-90 1-32 (388)
165 KOG2665|consensus 98.6 9.4E-08 2E-12 83.3 6.6 38 54-91 46-84 (453)
166 PF04820 Trp_halogenase: Trypt 98.6 1.3E-07 2.9E-12 89.4 8.2 58 240-303 155-212 (454)
167 TIGR01989 COQ6 Ubiquinone bios 98.6 6.1E-07 1.3E-11 84.7 12.2 33 57-90 1-37 (437)
168 PF00743 FMO-like: Flavin-bind 98.6 2.6E-07 5.7E-12 88.8 9.6 36 58-94 3-38 (531)
169 PF13450 NAD_binding_8: NAD(P) 98.5 9.8E-08 2.1E-12 65.7 4.2 33 61-94 1-33 (68)
170 KOG2853|consensus 98.5 2.1E-06 4.6E-11 75.8 13.0 41 52-92 82-125 (509)
171 COG2509 Uncharacterized FAD-de 98.5 7.5E-07 1.6E-11 81.5 10.6 51 247-303 181-231 (486)
172 PRK08294 phenol 2-monooxygenas 98.5 1.2E-06 2.7E-11 86.2 12.1 39 53-91 29-67 (634)
173 PRK06475 salicylate hydroxylas 98.5 9.4E-07 2E-11 82.5 10.8 33 58-91 4-36 (400)
174 TIGR03377 glycerol3P_GlpA glyc 98.5 7.4E-07 1.6E-11 86.0 10.3 59 247-308 136-196 (516)
175 PRK15317 alkyl hydroperoxide r 98.5 1.4E-06 3E-11 84.1 12.0 55 250-307 398-455 (517)
176 COG2072 TrkA Predicted flavopr 98.5 1.6E-06 3.5E-11 81.8 11.9 39 54-93 6-45 (443)
177 PF05834 Lycopene_cycl: Lycope 98.4 1.3E-06 2.8E-11 80.8 10.3 33 58-91 1-35 (374)
178 COG3075 GlpB Anaerobic glycero 98.4 2.6E-06 5.5E-11 75.0 10.0 58 247-307 266-323 (421)
179 PRK06116 glutathione reductase 98.4 3.7E-07 8.1E-12 86.5 4.8 35 54-89 2-36 (450)
180 PTZ00058 glutathione reductase 98.3 1E-06 2.2E-11 85.4 7.3 35 55-90 47-81 (561)
181 TIGR02730 carot_isom carotene 98.3 4.6E-07 9.9E-12 86.9 4.8 53 245-303 235-287 (493)
182 PRK06370 mercuric reductase; V 98.3 6.2E-07 1.3E-11 85.3 5.2 37 53-90 2-38 (463)
183 TIGR01424 gluta_reduc_2 glutat 98.3 5.9E-07 1.3E-11 85.1 4.7 33 56-89 2-34 (446)
184 PRK08010 pyridine nucleotide-d 98.3 7.2E-07 1.6E-11 84.4 4.7 36 55-91 2-37 (441)
185 TIGR01421 gluta_reduc_1 glutat 98.3 7.3E-07 1.6E-11 84.5 4.7 34 56-90 2-35 (450)
186 PRK06115 dihydrolipoamide dehy 98.2 1E-06 2.3E-11 83.8 4.9 33 56-89 3-35 (466)
187 PRK07251 pyridine nucleotide-d 98.2 1.2E-06 2.6E-11 82.8 4.7 34 56-90 3-36 (438)
188 KOG2960|consensus 98.2 5E-07 1.1E-11 74.6 1.8 35 56-90 76-111 (328)
189 PRK07818 dihydrolipoamide dehy 98.2 1.2E-06 2.7E-11 83.3 4.8 35 55-90 3-37 (466)
190 PRK05249 soluble pyridine nucl 98.2 1.3E-06 2.9E-11 83.0 5.0 37 55-92 4-40 (461)
191 TIGR03143 AhpF_homolog putativ 98.2 1.4E-06 3E-11 84.8 4.7 37 54-91 2-38 (555)
192 TIGR03219 salicylate_mono sali 98.2 3E-05 6.5E-10 72.7 13.6 33 58-91 2-35 (414)
193 PRK06416 dihydrolipoamide dehy 98.2 1.4E-06 3E-11 83.0 4.6 35 55-90 3-37 (462)
194 PRK07208 hypothetical protein; 98.2 1.7E-06 3.7E-11 82.7 5.2 40 54-94 2-41 (479)
195 TIGR00031 UDP-GALP_mutase UDP- 98.2 1.8E-06 4E-11 79.4 5.0 37 57-94 2-38 (377)
196 KOG1335|consensus 98.2 2E-05 4.3E-10 70.8 11.2 36 55-91 38-73 (506)
197 KOG1399|consensus 98.2 1E-05 2.2E-10 75.9 9.8 38 56-94 6-43 (448)
198 TIGR02733 desat_CrtD C-3',4' d 98.2 1.8E-06 3.8E-11 82.9 4.9 37 57-94 2-38 (492)
199 PF13434 K_oxygenase: L-lysine 98.2 2.3E-05 5E-10 71.4 11.9 35 56-90 2-36 (341)
200 KOG2311|consensus 98.2 5.9E-06 1.3E-10 76.0 7.9 35 54-89 26-60 (679)
201 TIGR02352 thiamin_ThiO glycine 98.2 8.9E-06 1.9E-10 73.7 9.2 56 245-307 143-198 (337)
202 TIGR01350 lipoamide_DH dihydro 98.2 2E-06 4.4E-11 81.8 4.9 33 56-89 1-33 (461)
203 PRK06327 dihydrolipoamide dehy 98.2 1.8E-06 3.9E-11 82.4 4.5 33 55-88 3-35 (475)
204 KOG0029|consensus 98.2 2.2E-06 4.7E-11 81.7 4.8 39 55-94 14-52 (501)
205 COG0562 Glf UDP-galactopyranos 98.1 3E-06 6.5E-11 74.3 4.8 37 57-94 2-38 (374)
206 TIGR02053 MerA mercuric reduct 98.1 2.3E-06 5.1E-11 81.4 4.5 33 57-90 1-33 (463)
207 TIGR01292 TRX_reduct thioredox 98.1 2.6E-06 5.6E-11 75.9 4.3 33 57-90 1-33 (300)
208 PTZ00052 thioredoxin reductase 98.1 2.7E-06 5.8E-11 81.7 4.6 34 55-89 4-37 (499)
209 TIGR02734 crtI_fam phytoene de 98.1 2.4E-06 5.3E-11 82.1 4.3 50 245-300 225-274 (502)
210 PLN02546 glutathione reductase 98.1 2.8E-06 6E-11 82.3 4.6 33 55-88 78-110 (558)
211 PRK14694 putative mercuric red 98.1 3E-06 6.6E-11 80.7 4.6 35 55-90 5-39 (468)
212 PRK06292 dihydrolipoamide dehy 98.1 3.1E-06 6.8E-11 80.5 4.6 34 55-89 2-35 (460)
213 COG1252 Ndh NADH dehydrogenase 98.1 5.6E-05 1.2E-09 69.8 12.4 58 242-309 212-269 (405)
214 PTZ00153 lipoamide dehydrogena 98.1 3.7E-06 8E-11 82.7 4.9 33 56-89 116-148 (659)
215 PRK09897 hypothetical protein; 98.1 5.2E-05 1.1E-09 73.0 12.5 36 57-92 2-38 (534)
216 PRK07233 hypothetical protein; 98.1 3.8E-06 8.3E-11 78.9 4.7 36 58-94 1-36 (434)
217 PLN02268 probable polyamine ox 98.1 4.1E-06 8.9E-11 79.0 4.9 36 58-94 2-37 (435)
218 PRK13748 putative mercuric red 98.1 3.9E-06 8.4E-11 81.9 4.7 35 55-90 97-131 (561)
219 TIGR03197 MnmC_Cterm tRNA U-34 98.1 2E-05 4.3E-10 73.1 9.2 55 245-307 141-195 (381)
220 PRK11883 protoporphyrinogen ox 98.1 3.9E-06 8.4E-11 79.4 4.6 36 58-94 2-39 (451)
221 PLN02576 protoporphyrinogen ox 98.1 5E-06 1.1E-10 79.8 5.3 41 54-94 10-50 (496)
222 PF06100 Strep_67kDa_ant: Stre 98.1 0.00037 8.1E-09 65.3 17.2 52 248-299 216-271 (500)
223 TIGR01423 trypano_reduc trypan 98.1 5.2E-06 1.1E-10 79.3 5.3 35 55-89 2-36 (486)
224 PLN02507 glutathione reductase 98.0 4.5E-06 9.7E-11 80.1 4.4 33 55-88 24-56 (499)
225 TIGR01789 lycopene_cycl lycope 98.0 7.2E-06 1.6E-10 75.7 4.5 34 58-91 1-35 (370)
226 TIGR00562 proto_IX_ox protopor 97.9 9.3E-06 2E-10 77.2 4.8 38 57-94 3-43 (462)
227 PRK14727 putative mercuric red 97.9 1.1E-05 2.4E-10 77.2 4.9 36 55-91 15-50 (479)
228 PF07992 Pyr_redox_2: Pyridine 97.9 1.4E-05 3E-10 66.9 4.5 32 58-90 1-32 (201)
229 PLN02568 polyamine oxidase 97.9 1.5E-05 3.3E-10 77.0 5.3 39 55-94 4-47 (539)
230 TIGR01372 soxA sarcosine oxida 97.9 1.8E-05 3.9E-10 81.9 6.0 39 54-93 161-199 (985)
231 TIGR01438 TGR thioredoxin and 97.9 1.2E-05 2.6E-10 76.9 4.3 33 56-89 2-34 (484)
232 PRK10262 thioredoxin reductase 97.9 1.2E-05 2.7E-10 72.7 4.3 53 245-300 191-246 (321)
233 COG2907 Predicted NAD/FAD-bind 97.9 9E-05 2E-09 65.9 9.3 37 56-94 8-44 (447)
234 COG3349 Uncharacterized conser 97.9 1.3E-05 2.9E-10 74.9 4.4 36 58-94 2-37 (485)
235 COG1231 Monoamine oxidase [Ami 97.8 2.1E-05 4.5E-10 72.5 5.0 39 55-94 6-44 (450)
236 PRK05335 tRNA (uracil-5-)-meth 97.8 1.6E-05 3.6E-10 73.7 4.4 35 57-92 3-37 (436)
237 KOG0405|consensus 97.8 0.00017 3.7E-09 64.2 10.2 35 54-89 18-52 (478)
238 PLN02676 polyamine oxidase 97.8 2.2E-05 4.7E-10 75.2 5.1 38 56-94 26-64 (487)
239 COG3634 AhpF Alkyl hydroperoxi 97.8 0.00034 7.3E-09 62.3 12.0 55 249-306 400-457 (520)
240 PRK12416 protoporphyrinogen ox 97.8 1.8E-05 3.9E-10 75.3 4.4 37 58-94 3-44 (463)
241 TIGR02731 phytoene_desat phyto 97.8 2.2E-05 4.8E-10 74.5 4.8 36 58-94 1-36 (453)
242 PLN02927 antheraxanthin epoxid 97.8 3.3E-05 7.1E-10 75.9 5.4 36 54-90 79-114 (668)
243 KOG2614|consensus 97.8 3E-05 6.5E-10 70.5 4.7 37 56-93 2-38 (420)
244 TIGR03140 AhpF alkyl hydropero 97.8 2.5E-05 5.3E-10 75.4 4.4 54 251-307 400-456 (515)
245 TIGR03315 Se_ygfK putative sel 97.8 3.1E-05 6.7E-10 79.2 5.1 39 55-94 536-574 (1012)
246 PF13454 NAD_binding_9: FAD-NA 97.7 0.0013 2.8E-08 53.0 13.5 32 60-91 1-36 (156)
247 PRK12831 putative oxidoreducta 97.7 5.2E-05 1.1E-09 72.2 6.0 38 55-93 139-176 (464)
248 KOG2403|consensus 97.7 7.9E-05 1.7E-09 69.8 6.3 38 52-90 51-88 (642)
249 COG1232 HemY Protoporphyrinoge 97.7 4.7E-05 1E-09 71.2 4.4 36 58-94 2-39 (444)
250 TIGR00137 gid_trmFO tRNA:m(5)U 97.7 4.6E-05 9.9E-10 71.1 4.2 34 57-91 1-34 (433)
251 TIGR03452 mycothione_red mycot 97.6 7.6E-05 1.6E-09 70.9 5.1 32 56-90 2-33 (452)
252 COG1148 HdrA Heterodisulfide r 97.6 6.7E-05 1.4E-09 69.4 4.2 39 55-94 123-161 (622)
253 TIGR02732 zeta_caro_desat caro 97.6 7.1E-05 1.5E-09 71.4 4.6 36 58-94 1-36 (474)
254 PRK07846 mycothione reductase; 97.6 8.2E-05 1.8E-09 70.6 5.0 32 56-90 1-32 (451)
255 PLN02529 lysine-specific histo 97.6 0.0002 4.4E-09 71.3 7.8 39 55-94 159-197 (738)
256 TIGR01316 gltA glutamate synth 97.6 0.00011 2.3E-09 69.7 5.7 37 55-92 132-168 (449)
257 KOG4716|consensus 97.6 7.1E-05 1.5E-09 66.3 3.8 35 55-90 18-52 (503)
258 PRK12810 gltD glutamate syntha 97.6 0.00011 2.3E-09 70.3 5.3 38 55-93 142-179 (471)
259 PRK06912 acoL dihydrolipoamide 97.5 7.6E-05 1.7E-09 71.0 4.3 33 58-91 2-34 (458)
260 PLN02612 phytoene desaturase 97.5 9.9E-05 2.1E-09 72.0 5.1 38 56-94 93-130 (567)
261 PLN02328 lysine-specific histo 97.5 0.00013 2.7E-09 73.2 5.3 39 55-94 237-275 (808)
262 PRK12779 putative bifunctional 97.5 0.00011 2.3E-09 75.5 4.7 38 56-94 306-343 (944)
263 PF00996 GDI: GDP dissociation 97.5 0.00013 2.8E-09 68.3 4.6 41 53-94 1-41 (438)
264 PRK12778 putative bifunctional 97.4 0.00016 3.5E-09 73.0 5.2 38 55-93 430-467 (752)
265 PRK09853 putative selenate red 97.4 0.00014 3.1E-09 74.2 4.8 39 55-94 538-576 (1019)
266 PRK12775 putative trifunctiona 97.4 0.00014 3.1E-09 75.2 4.9 38 55-93 429-466 (1006)
267 PF00070 Pyr_redox: Pyridine n 97.4 0.00026 5.6E-09 50.2 4.8 34 59-93 2-35 (80)
268 PRK12769 putative oxidoreducta 97.4 0.00017 3.7E-09 71.7 5.1 38 55-93 326-363 (654)
269 PRK07845 flavoprotein disulfid 97.4 0.00016 3.5E-09 68.9 4.8 32 58-90 3-34 (466)
270 PLN02852 ferredoxin-NADP+ redu 97.4 0.00021 4.6E-09 68.1 5.5 40 55-94 25-65 (491)
271 KOG0685|consensus 97.4 0.00017 3.7E-09 66.7 4.6 40 55-94 20-59 (498)
272 PRK11749 dihydropyrimidine deh 97.4 0.0002 4.3E-09 68.1 5.2 38 55-93 139-176 (457)
273 PLN02487 zeta-carotene desatur 97.4 0.00027 5.9E-09 68.6 5.6 38 56-94 75-112 (569)
274 PRK08255 salicylyl-CoA 5-hydro 97.3 0.0002 4.3E-09 72.4 4.3 34 58-91 2-36 (765)
275 PRK12814 putative NADPH-depend 97.3 0.00033 7.1E-09 69.5 5.0 38 55-93 192-229 (652)
276 TIGR01318 gltD_gamma_fam gluta 97.2 0.00049 1.1E-08 65.6 5.1 38 55-93 140-177 (467)
277 PLN03000 amine oxidase 97.2 0.00045 9.8E-09 69.5 5.0 39 55-94 183-221 (881)
278 PRK06416 dihydrolipoamide dehy 97.2 0.0041 8.8E-08 59.2 11.4 32 58-90 174-205 (462)
279 TIGR03140 AhpF alkyl hydropero 97.2 0.0056 1.2E-07 59.2 12.3 32 58-90 354-385 (515)
280 PRK06567 putative bifunctional 97.2 0.00053 1.1E-08 69.6 5.4 35 55-90 382-416 (1028)
281 PRK12770 putative glutamate sy 97.2 0.00059 1.3E-08 62.6 5.3 37 56-93 18-54 (352)
282 TIGR01350 lipoamide_DH dihydro 97.2 0.0039 8.5E-08 59.3 11.1 33 57-90 171-203 (461)
283 KOG3855|consensus 97.1 0.00052 1.1E-08 62.5 4.1 37 55-91 35-74 (481)
284 PRK05976 dihydrolipoamide dehy 97.1 0.0052 1.1E-07 58.7 11.2 32 58-90 182-213 (472)
285 TIGR02053 MerA mercuric reduct 97.1 0.0048 1E-07 58.8 10.9 33 57-90 167-199 (463)
286 PTZ00188 adrenodoxin reductase 97.1 0.00063 1.4E-08 64.4 4.7 39 56-94 39-77 (506)
287 PRK06912 acoL dihydrolipoamide 97.1 0.0051 1.1E-07 58.5 10.9 32 58-90 172-203 (458)
288 PRK12809 putative oxidoreducta 97.1 0.00086 1.9E-08 66.5 5.7 38 55-93 309-346 (639)
289 PLN02976 amine oxidase 97.1 0.00069 1.5E-08 71.0 5.0 39 55-94 692-730 (1713)
290 TIGR01317 GOGAT_sm_gam glutama 97.0 0.00081 1.8E-08 64.4 5.0 36 56-92 143-178 (485)
291 PRK06370 mercuric reductase; V 97.0 0.0062 1.3E-07 58.0 10.8 32 58-90 173-204 (463)
292 PRK07818 dihydrolipoamide dehy 97.0 0.0074 1.6E-07 57.6 11.3 32 58-90 174-205 (466)
293 PRK12771 putative glutamate sy 97.0 0.0012 2.6E-08 64.5 6.0 38 55-93 136-173 (564)
294 PRK04965 NADH:flavorubredoxin 97.0 0.0065 1.4E-07 56.2 10.1 33 57-90 142-174 (377)
295 PRK10262 thioredoxin reductase 96.9 0.019 4.2E-07 51.8 12.8 32 58-90 148-179 (321)
296 PRK06327 dihydrolipoamide dehy 96.9 0.011 2.3E-07 56.6 11.2 32 58-90 185-216 (475)
297 COG4529 Uncharacterized protei 96.9 0.0095 2E-07 55.7 10.2 35 57-91 2-38 (474)
298 PRK06115 dihydrolipoamide dehy 96.9 0.011 2.4E-07 56.4 11.1 32 58-90 176-207 (466)
299 PRK13984 putative oxidoreducta 96.8 0.0017 3.6E-08 64.0 5.4 38 55-93 282-319 (604)
300 TIGR03862 flavo_PP4765 unchara 96.8 0.0018 3.9E-08 59.7 4.9 87 202-305 58-145 (376)
301 TIGR01316 gltA glutamate synth 96.7 0.017 3.7E-07 54.8 11.4 32 58-90 274-305 (449)
302 PRK14989 nitrite reductase sub 96.7 0.0092 2E-07 60.9 9.9 32 58-90 147-178 (847)
303 TIGR01292 TRX_reduct thioredox 96.7 0.024 5.1E-07 50.3 11.6 52 252-307 190-244 (300)
304 PRK09754 phenylpropionate diox 96.7 0.0021 4.5E-08 59.9 4.5 34 57-91 4-39 (396)
305 TIGR01421 gluta_reduc_1 glutat 96.6 0.015 3.2E-07 55.3 10.1 32 58-90 168-199 (450)
306 KOG1276|consensus 96.6 0.0021 4.6E-08 58.9 4.1 40 55-94 10-50 (491)
307 PRK09564 coenzyme A disulfide 96.6 0.002 4.4E-08 60.9 4.1 34 58-91 2-36 (444)
308 TIGR02374 nitri_red_nirB nitri 96.6 0.01 2.2E-07 60.3 9.4 32 58-90 142-173 (785)
309 PRK12831 putative oxidoreducta 96.5 0.026 5.7E-07 53.8 10.8 32 58-90 283-314 (464)
310 PRK09564 coenzyme A disulfide 96.5 0.018 4E-07 54.4 9.8 33 57-90 150-182 (444)
311 PRK13512 coenzyme A disulfide 96.4 0.0037 8E-08 59.1 4.6 34 58-91 3-37 (438)
312 COG3486 IucD Lysine/ornithine 96.4 0.05 1.1E-06 49.9 11.2 38 54-91 3-40 (436)
313 PRK06116 glutathione reductase 96.4 0.046 9.9E-07 51.9 11.7 33 57-90 168-200 (450)
314 KOG1439|consensus 96.3 0.0025 5.3E-08 57.9 2.7 41 53-94 1-41 (440)
315 PTZ00318 NADH dehydrogenase-li 96.3 0.0057 1.2E-07 57.6 5.2 36 55-91 9-44 (424)
316 TIGR01438 TGR thioredoxin and 96.3 0.033 7.2E-07 53.4 10.2 30 58-88 182-211 (484)
317 PRK11749 dihydropyrimidine deh 96.1 0.046 1E-06 52.0 10.4 32 57-89 274-306 (457)
318 COG0493 GltD NADPH-dependent g 96.1 0.0059 1.3E-07 57.8 4.2 38 56-94 123-160 (457)
319 TIGR03169 Nterm_to_SelD pyridi 96.1 0.0087 1.9E-07 55.0 5.3 35 58-92 1-37 (364)
320 TIGR01423 trypano_reduc trypan 96.1 0.044 9.5E-07 52.6 10.0 46 249-300 241-286 (486)
321 KOG1800|consensus 96.1 0.0083 1.8E-07 54.3 4.6 38 57-94 21-59 (468)
322 COG5044 MRS6 RAB proteins gera 96.0 0.011 2.3E-07 53.4 4.9 38 56-94 6-43 (434)
323 PRK12810 gltD glutamate syntha 96.0 0.065 1.4E-06 51.2 10.6 50 250-302 340-400 (471)
324 KOG4405|consensus 96.0 0.0089 1.9E-07 54.5 4.2 41 53-94 5-45 (547)
325 COG1206 Gid NAD(FAD)-utilizing 95.8 0.0079 1.7E-07 53.5 3.1 34 57-91 4-37 (439)
326 PRK04965 NADH:flavorubredoxin 95.7 0.013 2.9E-07 54.2 4.5 35 57-91 3-38 (377)
327 PF02558 ApbA: Ketopantoate re 95.6 0.017 3.7E-07 45.9 4.3 31 59-90 1-31 (151)
328 KOG2755|consensus 95.6 0.01 2.2E-07 51.2 2.8 35 58-92 1-36 (334)
329 PRK12778 putative bifunctional 95.5 0.12 2.6E-06 52.5 10.9 32 58-90 572-604 (752)
330 PF13434 K_oxygenase: L-lysine 95.4 0.28 6E-06 44.8 11.9 48 250-300 290-339 (341)
331 PRK12779 putative bifunctional 95.3 0.24 5.2E-06 51.4 12.5 31 58-89 449-479 (944)
332 TIGR02730 carot_isom carotene 95.2 0.027 5.8E-07 54.1 5.0 37 57-94 1-37 (493)
333 COG0446 HcaD Uncharacterized N 95.2 0.022 4.9E-07 52.8 4.3 37 57-94 137-173 (415)
334 PRK12769 putative oxidoreducta 95.2 0.18 3.8E-06 50.4 10.8 32 58-90 470-502 (654)
335 PF01210 NAD_Gly3P_dh_N: NAD-d 95.2 0.025 5.3E-07 45.6 4.0 31 59-90 2-32 (157)
336 COG0569 TrkA K+ transport syst 95.2 0.022 4.9E-07 48.8 3.8 32 58-90 2-33 (225)
337 TIGR01318 gltD_gamma_fam gluta 95.0 0.23 5.1E-06 47.4 10.7 33 57-90 283-316 (467)
338 KOG0404|consensus 94.7 0.03 6.5E-07 47.3 3.2 53 244-299 198-252 (322)
339 TIGR01372 soxA sarcosine oxida 94.6 0.33 7.2E-06 50.8 11.4 54 250-307 362-417 (985)
340 PF02737 3HCDH_N: 3-hydroxyacy 94.6 0.053 1.1E-06 44.7 4.4 31 59-90 2-32 (180)
341 PRK09754 phenylpropionate diox 94.5 0.045 9.8E-07 51.0 4.4 34 58-92 146-179 (396)
342 COG4716 Myosin-crossreactive a 94.3 0.093 2E-06 47.7 5.6 52 249-300 237-290 (587)
343 KOG1336|consensus 94.2 0.39 8.4E-06 45.1 9.4 46 249-299 265-310 (478)
344 PRK05708 2-dehydropantoate 2-r 94.2 0.056 1.2E-06 48.6 4.0 32 58-90 4-35 (305)
345 TIGR02374 nitri_red_nirB nitri 94.1 0.056 1.2E-06 55.0 4.3 51 244-301 187-237 (785)
346 PRK07251 pyridine nucleotide-d 94.1 0.06 1.3E-06 50.9 4.3 35 58-93 159-193 (438)
347 KOG0399|consensus 94.1 0.068 1.5E-06 54.9 4.7 40 55-95 1784-1823(2142)
348 PRK14989 nitrite reductase sub 94.0 0.07 1.5E-06 54.7 4.8 59 244-307 192-251 (847)
349 PF01593 Amino_oxidase: Flavin 93.9 0.051 1.1E-06 50.3 3.4 44 249-299 219-262 (450)
350 KOG3851|consensus 93.9 0.06 1.3E-06 47.9 3.5 37 54-90 37-74 (446)
351 PRK02705 murD UDP-N-acetylmura 93.8 0.076 1.6E-06 50.5 4.4 32 59-91 3-34 (459)
352 PRK06467 dihydrolipoamide dehy 93.8 0.085 1.9E-06 50.4 4.6 35 58-93 176-210 (471)
353 PRK07846 mycothione reductase; 93.7 0.08 1.7E-06 50.3 4.4 36 57-93 167-202 (451)
354 TIGR02733 desat_CrtD C-3',4' d 93.7 0.15 3.3E-06 48.9 6.3 53 245-300 238-292 (492)
355 PRK06129 3-hydroxyacyl-CoA deh 93.7 0.073 1.6E-06 47.9 3.8 32 58-90 4-35 (308)
356 PRK01438 murD UDP-N-acetylmura 93.6 0.087 1.9E-06 50.4 4.4 32 58-90 18-49 (480)
357 PRK06249 2-dehydropantoate 2-r 93.6 0.089 1.9E-06 47.4 4.2 33 57-90 6-38 (313)
358 PF13738 Pyr_redox_3: Pyridine 93.6 0.099 2.1E-06 43.5 4.3 33 57-90 168-200 (203)
359 PF03721 UDPG_MGDP_dh_N: UDP-g 93.5 0.099 2.1E-06 43.3 4.0 31 59-90 3-33 (185)
360 COG1249 Lpd Pyruvate/2-oxoglut 93.2 0.13 2.9E-06 48.6 4.9 36 58-94 175-210 (454)
361 TIGR03385 CoA_CoA_reduc CoA-di 93.2 0.11 2.4E-06 48.9 4.3 34 58-92 139-172 (427)
362 PRK12921 2-dehydropantoate 2-r 93.2 0.1 2.3E-06 46.6 4.0 30 58-88 2-31 (305)
363 PRK06522 2-dehydropantoate 2-r 93.1 0.11 2.5E-06 46.2 4.2 30 59-89 3-32 (304)
364 PRK13512 coenzyme A disulfide 93.1 0.11 2.4E-06 49.1 4.2 34 58-92 150-183 (438)
365 PRK12775 putative trifunctiona 93.0 0.94 2E-05 47.5 11.1 50 250-301 620-685 (1006)
366 PRK14106 murD UDP-N-acetylmura 92.9 0.13 2.7E-06 48.8 4.4 33 57-90 6-38 (450)
367 KOG3923|consensus 92.9 0.13 2.9E-06 45.2 4.0 38 56-93 3-46 (342)
368 PF02254 TrkA_N: TrkA-N domain 92.9 0.17 3.6E-06 38.2 4.2 31 59-90 1-31 (116)
369 PRK05249 soluble pyridine nucl 92.8 0.13 2.9E-06 48.9 4.3 35 58-93 177-211 (461)
370 PRK08293 3-hydroxybutyryl-CoA 92.7 0.14 3E-06 45.6 4.0 32 58-90 5-36 (287)
371 TIGR02731 phytoene_desat phyto 92.7 0.28 6E-06 46.6 6.3 50 248-299 222-273 (453)
372 PRK06292 dihydrolipoamide dehy 92.7 0.14 3E-06 48.7 4.3 35 58-93 171-205 (460)
373 PRK09260 3-hydroxybutyryl-CoA 92.7 0.12 2.7E-06 45.9 3.7 32 58-90 3-34 (288)
374 TIGR03452 mycothione_red mycot 92.6 0.15 3.2E-06 48.6 4.3 35 57-92 170-204 (452)
375 PRK07066 3-hydroxybutyryl-CoA 92.5 0.15 3.3E-06 46.0 4.1 32 58-90 9-40 (321)
376 PF01488 Shikimate_DH: Shikima 92.4 0.19 4.2E-06 39.2 4.1 33 56-89 12-45 (135)
377 TIGR02734 crtI_fam phytoene de 92.4 0.23 5E-06 47.8 5.4 35 59-94 1-35 (502)
378 PRK07819 3-hydroxybutyryl-CoA 92.3 0.16 3.4E-06 45.2 3.8 33 58-91 7-39 (286)
379 TIGR01424 gluta_reduc_2 glutat 92.1 0.18 3.9E-06 47.8 4.2 34 58-92 168-201 (446)
380 PRK06718 precorrin-2 dehydroge 91.9 0.24 5.1E-06 41.7 4.2 32 57-89 11-42 (202)
381 PRK07845 flavoprotein disulfid 91.9 0.24 5.3E-06 47.2 4.8 36 58-94 179-214 (466)
382 COG1748 LYS9 Saccharopine dehy 91.9 0.21 4.5E-06 46.2 4.1 33 58-90 3-35 (389)
383 PLN02507 glutathione reductase 91.9 0.21 4.5E-06 48.2 4.4 34 58-92 205-238 (499)
384 TIGR02354 thiF_fam2 thiamine b 91.8 0.25 5.4E-06 41.5 4.3 35 56-91 21-56 (200)
385 COG1252 Ndh NADH dehydrogenase 91.8 0.14 3E-06 47.7 2.9 39 56-94 155-205 (405)
386 TIGR03143 AhpF_homolog putativ 91.8 0.2 4.3E-06 49.0 4.2 33 58-91 145-177 (555)
387 PRK04148 hypothetical protein; 91.8 0.18 3.8E-06 39.4 3.1 33 57-91 18-50 (134)
388 PTZ00153 lipoamide dehydrogena 91.8 0.21 4.5E-06 49.7 4.3 35 58-93 314-348 (659)
389 PRK08229 2-dehydropantoate 2-r 91.7 0.21 4.5E-06 45.5 4.0 32 58-90 4-35 (341)
390 PRK14620 NAD(P)H-dependent gly 91.6 0.22 4.8E-06 45.1 4.1 31 58-89 2-32 (326)
391 PRK06719 precorrin-2 dehydroge 91.6 0.28 6.1E-06 39.5 4.3 30 57-87 14-43 (157)
392 PRK07530 3-hydroxybutyryl-CoA 91.5 0.24 5.2E-06 44.1 4.2 32 58-90 6-37 (292)
393 PTZ00058 glutathione reductase 91.5 0.21 4.6E-06 48.8 4.0 35 58-93 239-273 (561)
394 TIGR02732 zeta_caro_desat caro 91.5 0.37 7.9E-06 46.2 5.6 61 247-308 227-291 (474)
395 PRK15317 alkyl hydroperoxide r 91.5 0.22 4.8E-06 48.2 4.1 33 58-91 353-385 (517)
396 PRK08010 pyridine nucleotide-d 91.3 0.3 6.6E-06 46.2 4.8 35 58-93 160-194 (441)
397 PF13241 NAD_binding_7: Putati 91.3 0.23 5E-06 36.8 3.2 33 56-89 7-39 (103)
398 PRK13748 putative mercuric red 91.2 0.25 5.5E-06 48.2 4.3 32 58-90 272-303 (561)
399 PRK07688 thiamine/molybdopteri 91.2 0.28 6.1E-06 44.8 4.3 35 56-91 24-59 (339)
400 PLN02546 glutathione reductase 91.1 0.26 5.6E-06 48.1 4.2 34 58-92 254-287 (558)
401 COG0492 TrxB Thioredoxin reduc 91.1 3 6.6E-05 37.4 10.7 51 251-306 191-243 (305)
402 TIGR01470 cysG_Nterm siroheme 90.9 0.34 7.4E-06 40.8 4.2 32 57-89 10-41 (205)
403 PLN02487 zeta-carotene desatur 90.8 0.4 8.7E-06 46.9 5.2 59 247-306 303-365 (569)
404 PRK15116 sulfur acceptor prote 90.8 0.31 6.8E-06 42.8 4.1 36 56-92 30-66 (268)
405 PRK06035 3-hydroxyacyl-CoA deh 90.8 0.31 6.8E-06 43.4 4.2 32 58-90 5-36 (291)
406 PRK12475 thiamine/molybdopteri 90.7 0.34 7.3E-06 44.2 4.3 36 56-92 24-60 (338)
407 cd01075 NAD_bind_Leu_Phe_Val_D 90.6 0.37 8E-06 40.4 4.2 31 58-89 30-60 (200)
408 PRK14727 putative mercuric red 90.6 0.31 6.8E-06 46.7 4.3 32 58-90 190-221 (479)
409 PRK14694 putative mercuric red 90.5 0.33 7.1E-06 46.4 4.3 32 58-90 180-211 (468)
410 cd05292 LDH_2 A subgroup of L- 90.4 0.38 8.1E-06 43.3 4.3 32 58-90 2-35 (308)
411 TIGR00518 alaDH alanine dehydr 90.3 0.35 7.6E-06 44.7 4.1 33 57-90 168-200 (370)
412 PRK05808 3-hydroxybutyryl-CoA 90.2 0.32 6.8E-06 43.1 3.7 32 58-90 5-36 (282)
413 PRK12770 putative glutamate sy 90.2 0.34 7.4E-06 44.3 4.0 32 58-90 174-206 (352)
414 PRK10669 putative cation:proto 90.1 1.7 3.6E-05 42.6 8.9 34 56-90 417-450 (558)
415 PRK14618 NAD(P)H-dependent gly 90.1 0.45 9.7E-06 43.2 4.6 32 58-90 6-37 (328)
416 PTZ00052 thioredoxin reductase 90.1 0.34 7.4E-06 46.7 4.0 31 58-89 184-214 (499)
417 TIGR01763 MalateDH_bact malate 90.1 0.39 8.5E-06 43.1 4.1 31 58-89 3-34 (305)
418 PRK00094 gpsA NAD(P)H-dependen 90.1 0.35 7.7E-06 43.5 3.9 32 58-90 3-34 (325)
419 cd01483 E1_enzyme_family Super 90.0 0.47 1E-05 37.3 4.1 32 59-91 2-34 (143)
420 PRK12548 shikimate 5-dehydroge 90.0 0.39 8.4E-06 42.8 4.0 32 58-90 128-160 (289)
421 PTZ00318 NADH dehydrogenase-li 90.0 0.41 8.9E-06 45.1 4.4 35 58-92 175-222 (424)
422 cd05311 NAD_bind_2_malic_enz N 89.9 0.38 8.2E-06 41.2 3.8 33 57-90 26-61 (226)
423 PRK12549 shikimate 5-dehydroge 89.8 0.44 9.5E-06 42.3 4.2 33 57-90 128-161 (284)
424 cd01487 E1_ThiF_like E1_ThiF_l 89.7 0.48 1E-05 38.8 4.1 32 59-91 2-34 (174)
425 COG1893 ApbA Ketopantoate redu 89.6 0.38 8.2E-06 43.3 3.7 31 59-90 3-33 (307)
426 PF01262 AlaDh_PNT_C: Alanine 89.6 0.53 1.1E-05 38.3 4.2 33 57-90 21-53 (168)
427 PRK02472 murD UDP-N-acetylmura 89.4 0.44 9.5E-06 45.1 4.2 32 58-90 7-38 (447)
428 cd01080 NAD_bind_m-THF_DH_Cycl 89.4 0.61 1.3E-05 38.0 4.4 33 56-89 44-77 (168)
429 cd05291 HicDH_like L-2-hydroxy 89.3 0.54 1.2E-05 42.3 4.4 33 58-91 2-36 (306)
430 cd00401 AdoHcyase S-adenosyl-L 89.2 0.51 1.1E-05 44.2 4.3 33 57-90 203-235 (413)
431 TIGR02356 adenyl_thiF thiazole 89.2 0.57 1.2E-05 39.4 4.2 36 55-91 20-56 (202)
432 PF00899 ThiF: ThiF family; I 89.0 0.69 1.5E-05 36.0 4.3 34 57-91 3-37 (135)
433 cd05191 NAD_bind_amino_acid_DH 89.0 0.8 1.7E-05 32.6 4.3 32 57-88 24-55 (86)
434 PRK06130 3-hydroxybutyryl-CoA 88.9 0.58 1.3E-05 42.0 4.4 32 58-90 6-37 (311)
435 PF13478 XdhC_C: XdhC Rossmann 88.9 0.52 1.1E-05 36.9 3.6 31 59-90 1-31 (136)
436 TIGR03026 NDP-sugDHase nucleot 88.7 0.49 1.1E-05 44.4 3.9 32 58-90 2-33 (411)
437 PLN02545 3-hydroxybutyryl-CoA 88.6 0.54 1.2E-05 41.9 3.9 32 58-90 6-37 (295)
438 COG1004 Ugd Predicted UDP-gluc 88.3 0.57 1.2E-05 43.1 3.8 32 58-90 2-33 (414)
439 TIGR02279 PaaC-3OHAcCoADH 3-hy 88.0 0.56 1.2E-05 45.2 3.9 32 58-90 7-38 (503)
440 PRK11064 wecC UDP-N-acetyl-D-m 88.0 0.59 1.3E-05 43.9 3.9 32 58-90 5-36 (415)
441 PRK07208 hypothetical protein; 88.0 1.5 3.2E-05 41.9 6.8 54 245-300 224-278 (479)
442 TIGR01915 npdG NADPH-dependent 87.9 0.73 1.6E-05 39.2 4.1 32 58-90 2-34 (219)
443 PRK14619 NAD(P)H-dependent gly 87.9 0.72 1.6E-05 41.4 4.3 33 58-91 6-38 (308)
444 PTZ00082 L-lactate dehydrogena 87.8 0.81 1.8E-05 41.4 4.5 34 57-91 7-41 (321)
445 PLN02520 bifunctional 3-dehydr 87.7 0.67 1.4E-05 45.0 4.2 31 58-89 381-411 (529)
446 cd01339 LDH-like_MDH L-lactate 87.7 0.67 1.4E-05 41.5 3.9 31 59-90 1-32 (300)
447 COG2072 TrkA Predicted flavopr 87.4 0.73 1.6E-05 43.7 4.2 33 58-91 177-209 (443)
448 PLN02612 phytoene desaturase 87.3 1.1 2.3E-05 44.1 5.3 46 249-299 318-363 (567)
449 COG0686 Ald Alanine dehydrogen 87.2 0.65 1.4E-05 41.3 3.4 34 56-90 168-201 (371)
450 PRK08644 thiamine biosynthesis 87.2 0.87 1.9E-05 38.6 4.1 35 56-91 28-63 (212)
451 PRK07531 bifunctional 3-hydrox 87.0 0.73 1.6E-05 44.4 4.0 32 58-90 6-37 (495)
452 PRK11730 fadB multifunctional 87.0 0.72 1.6E-05 46.5 4.1 32 58-90 315-346 (715)
453 TIGR02355 moeB molybdopterin s 86.7 1.1 2.4E-05 38.8 4.6 38 56-93 24-61 (240)
454 PRK08328 hypothetical protein; 86.6 0.98 2.1E-05 38.8 4.2 35 56-91 27-62 (231)
455 TIGR02853 spore_dpaA dipicolin 86.6 0.88 1.9E-05 40.5 4.0 33 57-90 152-184 (287)
456 PRK06223 malate dehydrogenase; 86.6 0.92 2E-05 40.7 4.2 32 58-90 4-36 (307)
457 PLN02172 flavin-containing mon 86.5 0.75 1.6E-05 43.9 3.7 33 58-91 206-238 (461)
458 PRK08268 3-hydroxy-acyl-CoA de 86.4 0.88 1.9E-05 44.0 4.2 33 58-91 9-41 (507)
459 PRK08017 oxidoreductase; Provi 86.4 0.99 2.1E-05 38.8 4.2 32 58-90 4-36 (256)
460 TIGR03736 PRTRC_ThiF PRTRC sys 86.3 1 2.3E-05 38.9 4.2 38 55-92 10-57 (244)
461 PRK14027 quinate/shikimate deh 86.3 1 2.3E-05 39.9 4.3 33 58-90 129-161 (283)
462 KOG2495|consensus 86.2 0.4 8.7E-06 44.4 1.7 36 57-92 219-267 (491)
463 TIGR00936 ahcY adenosylhomocys 86.2 1 2.2E-05 42.1 4.3 34 56-90 195-228 (406)
464 TIGR02437 FadB fatty oxidation 86.1 0.86 1.9E-05 46.0 4.1 32 58-90 315-346 (714)
465 COG0281 SfcA Malic enzyme [Ene 86.1 2.7 5.8E-05 39.1 6.8 37 55-92 198-237 (432)
466 TIGR00507 aroE shikimate 5-deh 86.1 1 2.2E-05 39.7 4.1 33 57-90 118-150 (270)
467 cd01078 NAD_bind_H4MPT_DH NADP 86.0 1.2 2.6E-05 37.0 4.3 32 57-89 29-61 (194)
468 COG3634 AhpF Alkyl hydroperoxi 85.9 0.66 1.4E-05 42.0 2.8 35 55-90 353-387 (520)
469 PRK04308 murD UDP-N-acetylmura 85.8 1.1 2.3E-05 42.5 4.4 33 58-91 7-39 (445)
470 PRK12550 shikimate 5-dehydroge 85.8 1.2 2.5E-05 39.4 4.3 32 58-90 124-156 (272)
471 PRK00258 aroE shikimate 5-dehy 85.6 1.1 2.4E-05 39.7 4.1 33 57-90 124-157 (278)
472 KOG2018|consensus 85.6 1 2.2E-05 40.1 3.7 32 58-89 76-107 (430)
473 PRK07417 arogenate dehydrogena 85.6 0.97 2.1E-05 40.0 3.8 32 58-90 2-33 (279)
474 PF00670 AdoHcyase_NAD: S-aden 85.4 1.1 2.3E-05 36.2 3.5 33 57-90 24-56 (162)
475 PRK09496 trkA potassium transp 85.4 0.92 2E-05 42.9 3.8 32 58-90 2-33 (453)
476 PRK05690 molybdopterin biosynt 85.3 1.4 3.1E-05 38.2 4.5 35 56-91 32-67 (245)
477 PRK00066 ldh L-lactate dehydro 85.2 1.4 2.9E-05 39.9 4.6 33 57-90 7-41 (315)
478 PRK06505 enoyl-(acyl carrier p 85.2 1.2 2.6E-05 39.0 4.2 31 58-89 9-42 (271)
479 PRK05476 S-adenosyl-L-homocyst 85.0 1.3 2.8E-05 41.7 4.4 33 57-90 213-245 (425)
480 TIGR01809 Shik-DH-AROM shikima 84.8 1.3 2.8E-05 39.3 4.2 32 57-89 126-158 (282)
481 PF03807 F420_oxidored: NADP o 84.7 1.4 3E-05 31.8 3.7 31 59-90 2-36 (96)
482 TIGR02441 fa_ox_alpha_mit fatt 84.7 1.1 2.3E-05 45.4 4.0 32 58-90 337-368 (737)
483 PLN02353 probable UDP-glucose 84.7 1.2 2.6E-05 42.6 4.1 33 58-90 3-36 (473)
484 TIGR03376 glycerol3P_DH glycer 84.5 1.3 2.8E-05 40.5 4.1 30 58-88 1-38 (342)
485 PRK08306 dipicolinate synthase 84.5 1.3 2.9E-05 39.5 4.2 33 57-90 153-185 (296)
486 PRK06153 hypothetical protein; 84.4 1.3 2.8E-05 40.9 4.0 38 56-93 176-213 (393)
487 cd00757 ThiF_MoeB_HesA_family 84.3 1.5 3.2E-05 37.6 4.2 35 56-91 21-56 (228)
488 PRK06057 short chain dehydroge 84.3 1.4 3E-05 38.1 4.1 32 58-90 9-41 (255)
489 PRK07326 short chain dehydroge 84.3 1.3 2.9E-05 37.5 4.0 32 58-90 8-40 (237)
490 PRK09424 pntA NAD(P) transhydr 84.3 1.2 2.5E-05 43.0 3.9 34 56-90 165-198 (509)
491 COG1250 FadB 3-hydroxyacyl-CoA 84.1 1.2 2.7E-05 39.8 3.7 32 58-90 5-36 (307)
492 PF03446 NAD_binding_2: NAD bi 84.0 1.6 3.5E-05 35.2 4.1 32 58-90 3-34 (163)
493 PLN02494 adenosylhomocysteinas 83.8 1.5 3.4E-05 41.5 4.4 35 56-91 254-288 (477)
494 PRK08177 short chain dehydroge 83.8 1.7 3.6E-05 36.7 4.4 32 59-91 4-36 (225)
495 PF00056 Ldh_1_N: lactate/mala 83.6 2 4.2E-05 33.8 4.3 32 58-90 2-36 (141)
496 TIGR01505 tartro_sem_red 2-hyd 83.5 1.2 2.7E-05 39.5 3.6 31 59-90 2-32 (291)
497 PRK06720 hypothetical protein; 83.5 1.8 3.9E-05 35.2 4.2 33 57-90 17-50 (169)
498 PRK07067 sorbitol dehydrogenas 83.3 1.7 3.6E-05 37.5 4.3 32 58-90 8-40 (257)
499 cd05290 LDH_3 A subgroup of L- 83.3 1.6 3.4E-05 39.3 4.1 31 59-90 2-34 (307)
500 PRK01710 murD UDP-N-acetylmura 83.3 1.5 3.4E-05 41.7 4.3 32 58-90 16-47 (458)
No 1
>KOG1238|consensus
Probab=100.00 E-value=7.8e-55 Score=405.83 Aligned_cols=266 Identities=53% Similarity=0.874 Sum_probs=245.3
Q ss_pred CCCCCCCCCCcc--cCCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCCcchhhhHHhhhcCCCCCccccc
Q psy17311 40 MYDPENRPIDQQ--QLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTE 117 (310)
Q Consensus 40 ~~~~~~~~~~~~--~~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~~~~p~~~~~~~~~~~~w~~~~~ 117 (310)
...+.+.+.+.. +...+||+||||||.|||++|.+|+|++.|+|||||+|+.++...++|.....++.+.++|.|.++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~ 118 (623)
T KOG1238|consen 39 LVDPESRPSDATGSELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTE 118 (623)
T ss_pred ccCcccccccccccccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCc
Confidence 344555554433 356789999999999999999999999999999999999998889999888899999999999999
Q ss_pred cCCcccCCCCCCccccCCcccccccccccCeeeecCCccchhhHHhcCCCCCCcCChHHHHHHhhhcCCCCCCCCCCCCC
Q psy17311 118 PTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKL 197 (310)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~g~~lGGss~~n~~~~~r~~~~d~~~w~~~g~~gw~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 197 (310)
|+..+|+.+.++.|.|||||+|||+|.+|+|+|.|++.+|||.|.+.|++||+|+++++||+|+|+...+.....+|| +
T Consensus 119 Ps~~ac~~m~~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~-~ 197 (623)
T KOG1238|consen 119 PSQHACLAMSEDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYH-G 197 (623)
T ss_pred cChhhhhhhcCCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCccc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999987777777788 7
Q ss_pred CCCh--------------hHHHHHHHcCCCCCCCCCCCCccceecccccCCCcccchhhhhhhcccC-CCCcEEecCcEE
Q psy17311 198 SNGL--------------HDVEAGQELGYENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRK-RKNLHIAMRAHV 262 (310)
Q Consensus 198 ~~g~--------------~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~-~~g~~v~~~~~V 262 (310)
..++ .+.++.+++|.+..|+||.++.|+...+.+.++|.|+++..+|+.++.. |+|+++..++.|
T Consensus 198 ~~g~~~ve~~~~~~~~~~~~~~ag~e~G~~~~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~v 277 (623)
T KOG1238|consen 198 AGGPLLVEAGVYPNNLFTAFHRAGTEIGGSIFDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAV 277 (623)
T ss_pred cCCcceeccccccCchhhHhHHhHHhcCCCccCCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceE
Confidence 7666 7778889999777999999999999999999999999999999999887 889999999999
Q ss_pred EEEEEcCCCCeEEEEEEEEC-CeEEEEEcCeEEEEecc-CCchhhh
Q psy17311 263 TKILVNPATKKAYGVQFIRH-GIKQTVLARREELEVIS-FRTTTLS 306 (310)
Q Consensus 263 ~~I~~~~~~~~v~GV~~~~~-g~~~~i~A~k~VIlaaG-~~s~~ll 306 (310)
++|++|+.+.++.||++.++ ++.++++|+|+|||||| ++||+||
T Consensus 278 trvl~D~~~~~a~gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLL 323 (623)
T KOG1238|consen 278 TRVLIDPAGKRAKGVEFVRDGGKEHTVKARKEVILSAGAINSPQLL 323 (623)
T ss_pred EEEEEcCCCceEEEEEEEecCceeeeecccceEEEeccccCCHHHH
Confidence 99999998899999999988 89999999999999999 9999996
No 2
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=1.7e-40 Score=320.93 Aligned_cols=244 Identities=44% Similarity=0.715 Sum_probs=198.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC---CCCcchhhhHHhh-hcCCCCCccccccCCcccCCCCCC
Q psy17311 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE---NEVTDVPSLAAWL-QLSKFDWQYKTEPTGRACLGYNQG 129 (310)
Q Consensus 54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~---~~~~~~p~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~ 129 (310)
..+|||||||||++|+++|.+|+|++|++|||||+|+.. ......|...... ..+.++|.|.+.|+. ...++
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~----~~~~~ 78 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEP----HMNNR 78 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCC----CCCCC
Confidence 357999999999999999999999559999999999753 2233455433322 345678999888876 45567
Q ss_pred ccccCCcccccccccccCeeeecCCccchhhHHhc-CCCCCCcCChHHHHHHhhhcCCCCCCCCCCCCCCCC--------
Q psy17311 130 RCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL-GNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNG-------- 200 (310)
Q Consensus 130 ~~~~~~g~~lGGss~~n~~~~~r~~~~d~~~w~~~-g~~gw~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~g-------- 200 (310)
.+.|++|+++||+|.+|+|.+.|+++.||+.|.+. |+++|+|++++|||+++|+..... ..+| +..+
T Consensus 79 ~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~---~~~~-g~~gp~~~~~~~ 154 (560)
T PRK02106 79 RMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGE---DDYR-GGDGPLSVTRGK 154 (560)
T ss_pred eeecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCC---cccc-CCCCCEEEeCCC
Confidence 88999999999999999999999999999999877 889999999999999999876321 1122 2111
Q ss_pred -------hhHHHHHHHcCCCC-CCCCCCCCccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCC
Q psy17311 201 -------LHDVEAGQELGYEN-RDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATK 272 (310)
Q Consensus 201 -------~~~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~ 272 (310)
..+.++++++|++. .+.++....|+..+..++.+|.|.++..+||.++.++.|++|++++.|++|+++ ++
T Consensus 155 ~~~~~~~~~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~--~~ 232 (560)
T PRK02106 155 PGTNPLFQAFVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFE--GK 232 (560)
T ss_pred CCCCHHHHHHHHHHHHcCCCcCCCCCCCCCceeEEEeeecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEe--CC
Confidence 25677888999987 567766677888777788899999999999988777899999999999999999 78
Q ss_pred eEEEEEEEECCeEEEEEcCeEEEEecc-CCchhhhh
Q psy17311 273 KAYGVQFIRHGIKQTVLARREELEVIS-FRTTTLSR 307 (310)
Q Consensus 273 ~v~GV~~~~~g~~~~i~A~k~VIlaaG-~~s~~ll~ 307 (310)
+++||++.+.+....+.+.|+|||||| ++||+||.
T Consensus 233 ~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl 268 (560)
T PRK02106 233 RAVGVEYERGGGRETARARREVILSAGAINSPQLLQ 268 (560)
T ss_pred eEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHh
Confidence 999999987655555556679999997 99999984
No 3
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=4.9e-40 Score=315.96 Aligned_cols=240 Identities=40% Similarity=0.667 Sum_probs=196.6
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC---CCcchhhhHHh-hhcCCCCCccccccCCcccCCCCCCcccc
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN---EVTDVPSLAAW-LQLSKFDWQYKTEPTGRACLGYNQGRCSW 133 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~---~~~~~p~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 133 (310)
||||||||.+|+++|.+|+|+++.+|||||+|+... .....|..... +..+.++|.|.+.|+. ...++.+.|
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~----~~~~~~~~~ 76 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEP----HMNNRRVGH 76 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCC----CCCCceEee
Confidence 899999999999999999998447999999997532 23344543332 2245678999888877 556778999
Q ss_pred CCcccccccccccCeeeecCCccchhhHHh-cCCCCCCcCChHHHHHHhhhcCCCCCCCCCCCCCCCCh-----------
Q psy17311 134 PRGKVLGGSSVLNYMLYVRGNRFDYDHWES-LGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGL----------- 201 (310)
Q Consensus 134 ~~g~~lGGss~~n~~~~~r~~~~d~~~w~~-~g~~gw~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~g~----------- 201 (310)
++|+++||+|.+|+|+|.|+++.||+.|.+ .|.++|+|++++|||++.|+..... .++| +..|+
T Consensus 77 ~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~---~~~~-g~~G~~~v~~~~~~~~ 152 (532)
T TIGR01810 77 ARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGE---KPYR-GHDGPIKVRRGPADNP 152 (532)
T ss_pred ecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCC---cccC-CCCCCEEEecCCCCCH
Confidence 999999999999999999999999999987 7889999999999999999876421 1233 33332
Q ss_pred ---hHHHHHHHcCCCC-CCCCCCCCccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEE
Q psy17311 202 ---HDVEAGQELGYEN-RDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGV 277 (310)
Q Consensus 202 ---~~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV 277 (310)
.+.++++++|++. .+.++....+++.+...+..|.|.++..+|+.++.++.|++|+++++|++|+++ +++++||
T Consensus 153 ~~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~--~~ra~GV 230 (532)
T TIGR01810 153 LFQAFIEAGVEAGYNKTPDVNGFRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFE--GNRATGV 230 (532)
T ss_pred HHHHHHHHHHHcCCCccCCCCCCCccceEEEEEEcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEec--CCeEEEE
Confidence 5677888999987 566666667888777778889999999999988777899999999999999998 8899999
Q ss_pred EEEECCeEEEEEcCeEEEEecc-CCchhhhh
Q psy17311 278 QFIRHGIKQTVLARREELEVIS-FRTTTLSR 307 (310)
Q Consensus 278 ~~~~~g~~~~i~A~k~VIlaaG-~~s~~ll~ 307 (310)
++.+++...++.+.|+||+||| ++||+||.
T Consensus 231 ~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl 261 (532)
T TIGR01810 231 EFKKGGRKEHTEANKEVILSAGAINSPQLLQ 261 (532)
T ss_pred EEEeCCcEEEEEEeeeEEEccCCCCCHHHHH
Confidence 9987655556666679999998 89999985
No 4
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=1.6e-40 Score=297.25 Aligned_cols=247 Identities=34% Similarity=0.558 Sum_probs=185.4
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCCcchhhh-HHhhhcCCCCCccccccCCcccCCCCCCccccCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSL-AAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWPR 135 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~~~~p~~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 135 (310)
|||||||||.+|+++|.+|+++++++|||||+|+........+.. ........++|.+.+.++. ...++.+.|++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 76 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQP----FLNGRTINWPR 76 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEE----CTTTTSEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCccccccccccccc----ccccceeeeec
Confidence 899999999999999999999855899999999876654422211 2223345678888777766 67788889999
Q ss_pred cccccccccccCeeeecCCccchhhHHhc-CCCCCCcCChHHHHHHhhhcCCCCCCC----C--------CCCCCCCChh
Q psy17311 136 GKVLGGSSVLNYMLYVRGNRFDYDHWESL-GNPGWGYDDVLPYFKKSEDNRNPYLAK----N--------RSLKLSNGLH 202 (310)
Q Consensus 136 g~~lGGss~~n~~~~~r~~~~d~~~w~~~-g~~gw~~~~~~~~~~~~e~~~~~~~~~----~--------~~~~~~~g~~ 202 (310)
|+++||+|.+|+|++.|+++.||+.|... |.++|+|+++.+||+++|....+.... . .+. ......
T Consensus 77 G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~g~~~~~~v~~~~~~~-~~~~~~ 155 (296)
T PF00732_consen 77 GKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPSSDLHGVDGPLPVSSSPPYP-SPMNQA 155 (296)
T ss_dssp B-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTBGGGSCBSSSEEEHHHCSCH-CTHHHH
T ss_pred ceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhccccccccccccccccccccCCC-CHHHHH
Confidence 99999999999999999999999999875 788899999999999999665432100 0 000 111126
Q ss_pred HHHHHHHcCCCC-CCCCCCCCccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE
Q psy17311 203 DVEAGQELGYEN-RDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR 281 (310)
Q Consensus 203 ~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~ 281 (310)
+.++++++|++. .+.+.....|++.....++.|.|.++..+||.++.++.|++|+++++|++|+++.++++++||++.+
T Consensus 156 ~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~ 235 (296)
T PF00732_consen 156 LMDAAEELGIPVPQDFNGCDPCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVD 235 (296)
T ss_dssp HHHHHHHTTHHBCSCTTSSTCSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEE
T ss_pred HHHHHHHcCCccccccccccccccccccccccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeee
Confidence 777888999984 5666666666666555689999999999999888888899999999999999875589999999997
Q ss_pred C-Ce-EEEEEcCeEEEEecc-CCchhhhhh
Q psy17311 282 H-GI-KQTVLARREELEVIS-FRTTTLSRD 308 (310)
Q Consensus 282 ~-g~-~~~i~A~k~VIlaaG-~~s~~ll~~ 308 (310)
. +. ...+.+.|+|||||| ++||+||..
T Consensus 236 ~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~ 265 (296)
T PF00732_consen 236 NDGGVQRRIVAAKEVILAAGAIGTPRLLLR 265 (296)
T ss_dssp TTTSEEEEEEEEEEEEE-SHHHHHHHHHHH
T ss_pred cCCcceeeeccceeEEeccCCCCChhhhcc
Confidence 4 33 344555579999998 999999853
No 5
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-39 Score=309.10 Aligned_cols=248 Identities=40% Similarity=0.662 Sum_probs=207.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC-CcchhhhHHhhhcC-CCCCccccccCCcccCCCCCCc
Q psy17311 53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE-VTDVPSLAAWLQLS-KFDWQYKTEPTGRACLGYNQGR 130 (310)
Q Consensus 53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~-~~~~p~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~ 130 (310)
+..+||+||||+|++|+++|.+|++ +|.+|+|||+|+.... ...+|.....+... ..+|.|.++++. .+.++.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~-~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~----~~~~r~ 78 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSD-AGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEP----HLRGRE 78 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcC-CCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCccc----CCCCcc
Confidence 3468999999999999999999995 6999999999976443 45667666666655 889999999988 788899
Q ss_pred cccCCcccccccccccCeeeecCCccchhhHHhc-CCCCCCcCChHHHHHHhhhcCCCCCCC-CCCCCCCCCh-------
Q psy17311 131 CSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL-GNPGWGYDDVLPYFKKSEDNRNPYLAK-NRSLKLSNGL------- 201 (310)
Q Consensus 131 ~~~~~g~~lGGss~~n~~~~~r~~~~d~~~w~~~-g~~gw~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~g~------- 201 (310)
+.|++|+++||+|.+|+|+|.|+.+.||+.|... |.++|.|++++|||+++|+........ ..+| +..+|
T Consensus 79 ~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~-g~~gp~~~~~~~ 157 (542)
T COG2303 79 LAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWH-GGGGPLPVSPPR 157 (542)
T ss_pred ccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCc-CCCCCccccCCC
Confidence 9999999999999999999999999999999664 779999999999999999866542221 2234 33333
Q ss_pred -------hHHHHHHHcCCCC-CCCCCCCCccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCe
Q psy17311 202 -------HDVEAGQELGYEN-RDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKK 273 (310)
Q Consensus 202 -------~~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~ 273 (310)
.+.++.+++|++. .++++..+.|++.++.++.+|.|+++..+||.++.+++|++|++++.|++|+++ ++|
T Consensus 158 ~~~~~~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~--~~r 235 (542)
T COG2303 158 SPNPIARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLE--GDR 235 (542)
T ss_pred CchHHHHHHHHHHHHcCCCcCcccccCCCCCcccceeeccCCeEeechhhcchhHhcCCceEEecCCEEEEEEEE--CCe
Confidence 5666778899987 678888888999888887899999999999999899999999999999999999 999
Q ss_pred EEEEEEEECCe--EEEEEcCeEEEEecc-CCchhhhhh
Q psy17311 274 AYGVQFIRHGI--KQTVLARREELEVIS-FRTTTLSRD 308 (310)
Q Consensus 274 v~GV~~~~~g~--~~~i~A~k~VIlaaG-~~s~~ll~~ 308 (310)
++||++..++. .....+.++|||||| ++||+||..
T Consensus 236 ~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~ 273 (542)
T COG2303 236 AVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLL 273 (542)
T ss_pred eEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHh
Confidence 99999986432 344455569999997 999999753
No 6
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=2.7e-32 Score=262.73 Aligned_cols=233 Identities=24% Similarity=0.306 Sum_probs=168.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCCcchhhhHHhhhcCCCCCccccccCCcccCCCCCCcccc
Q psy17311 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSW 133 (310)
Q Consensus 54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 133 (310)
+.+|||||||+|.+||++|.+|++ +.+|||||+|+.+.....++.. ..+....++|.|.+.++. ...++.+.|
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~~-~~~~~~~~d~~~~~~~q~----~~~~~~~~~ 125 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSFL-ENFHIGLADTSPTSASQA----FISTDGVIN 125 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhhH-HhhCCcccccCCcccccc----ccCCCceec
Confidence 457999999999999999999999 4899999999854322222221 122345578999888876 455778999
Q ss_pred CCcccccccccccCeeeecCCccchhhHHhcCCCCCCcCChHHHHHHhhhcCCCCCCCCCCCCCCCChhHHHHHHHcCCC
Q psy17311 134 PRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHDVEAGQELGYE 213 (310)
Q Consensus 134 ~~g~~lGGss~~n~~~~~r~~~~d~~~w~~~g~~gw~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~G~~ 213 (310)
+|||+|||+|.+|+|.|.|+++.||+. .||+|+++.+||++.|+.........++ ...+++++++.|++
T Consensus 126 ~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~~~~~~~~~-----~~~~~~a~~e~G~~ 194 (587)
T PLN02785 126 ARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIVHWPKVAPW-----QAALRDSLLEVGVS 194 (587)
T ss_pred cccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhcccccCCCcChH-----HHHHHHHHHHcCCC
Confidence 999999999999999999999999963 6899999999999998753211001111 12788889999997
Q ss_pred C-CCCCCCCCccceeccccc--CCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCC--CeEEEEEEEE-CCeEEE
Q psy17311 214 N-RDINGEKQTGFMVAQGTI--RRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPAT--KKAYGVQFIR-HGIKQT 287 (310)
Q Consensus 214 ~-~~~~~~~~~g~~~~~~~~--~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~--~~v~GV~~~~-~g~~~~ 287 (310)
. .........|... ..+. ..|.|.++.. ++ +.+++.|++|++++.|++|++++.+ ++++||++.+ +|+.++
T Consensus 195 ~~n~~~~d~~~G~~~-g~~i~~~~g~R~saa~-l~-~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~ 271 (587)
T PLN02785 195 PFNGFTYDHVYGTKV-GGTIFDEFGRRHTAAE-LL-AAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQ 271 (587)
T ss_pred ccCCCCCCCccceee-eEEEeCCCCEEcCHHH-HH-hhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEE
Confidence 4 2111111111111 1122 4577877665 44 5677899999999999999998421 4899999986 565444
Q ss_pred E----EcCeEEEEecc-CCchhhhh
Q psy17311 288 V----LARREELEVIS-FRTTTLSR 307 (310)
Q Consensus 288 i----~A~k~VIlaaG-~~s~~ll~ 307 (310)
+ +++|+||+||| ++||+||.
T Consensus 272 ~~~~~~~~~eVILsAGai~sP~lL~ 296 (587)
T PLN02785 272 AFLSNNKGSEIILSAGAIGSPQMLL 296 (587)
T ss_pred EEeecccCceEEecccccCCHHHHH
Confidence 3 26689999997 99999974
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=99.88 E-value=3e-21 Score=183.25 Aligned_cols=236 Identities=13% Similarity=0.059 Sum_probs=142.1
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCCc-------------chhhhH----HhhhcC-----------
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVT-------------DVPSLA----AWLQLS----------- 108 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~~-------------~~p~~~----~~~~~~----------- 108 (310)
|||||||+|++|+++|+.|+++ |.+|+|||++....... +...+. ..++..
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~-g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA-GLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPT 79 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC-CCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCC
Confidence 7999999999999999999998 99999999987654210 001110 001110
Q ss_pred --CCCCccccccCCcccCCC-----CCCcc-ccCCcccccccccccCeeeecCCccchhhHHhcCCCCC--CcCChHHHH
Q psy17311 109 --KFDWQYKTEPTGRACLGY-----NQGRC-SWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGW--GYDDVLPYF 178 (310)
Q Consensus 109 --~~~w~~~~~~~~~~~~~~-----~~~~~-~~~~g~~lGGss~~n~~~~~r~~~~d~~~w~~~g~~gw--~~~~~~~~~ 178 (310)
.-.|+..... .....+. ....+ .-.+-+.+||+|.+|++.+.|+++.+. .| .+ .+| +|+++.|||
T Consensus 80 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g--~~-~dWPI~y~eL~PyY 154 (544)
T TIGR02462 80 LDPTAWSASIES-FFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PK--LS-DDAAEDDAEWDRLY 154 (544)
T ss_pred CCccccccCCCc-ceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc-cC--CC-CCCCCCHHHHHHHH
Confidence 1112211000 0000000 00111 133567999999999999999999642 12 22 589 899999999
Q ss_pred HHhhhcCCCCCCCCCCCCCCCChhHHH-HHHHc-CC-CCCCCCCCCCccceecccccCCCcccchhhhhhhccc----CC
Q psy17311 179 KKSEDNRNPYLAKNRSLKLSNGLHDVE-AGQEL-GY-ENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVR----KR 251 (310)
Q Consensus 179 ~~~e~~~~~~~~~~~~~~~~~g~~~~~-~~~~~-G~-~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~----~~ 251 (310)
.++|++...... .|.+........+ ..+++ |. .+. . ....+... .|..+.+++...+.+..+. ++
T Consensus 155 ~~Ae~~~gv~g~--~~~~~~~~~~~~~~~~~~~~g~~~~~--~--~PlA~~~~--~c~~~ak~s~~~t~~~~~~~~~~~~ 226 (544)
T TIGR02462 155 TKAESLIGTSTD--QFDESIRHNLVLRKLQDEYKGQRDFQ--P--LPLACHRR--TDPTYVEWHSADTVFDLQPNDDAPS 226 (544)
T ss_pred HHHHHHhCCCCC--cCCCcccchhHHHHHHHHhccccccc--c--Cchhhhcc--CCCccceecCCccchhhhhhhhccC
Confidence 999998775432 1220100012222 22333 22 110 0 01111110 2334455554333343322 47
Q ss_pred CCcEEecCcEEEEEEEcCCC-CeEEEEEEEE--CCeEEEEEcCeEEEEecc-CCchhhhh
Q psy17311 252 KNLHIAMRAHVTKILVNPAT-KKAYGVQFIR--HGIKQTVLARREELEVIS-FRTTTLSR 307 (310)
Q Consensus 252 ~g~~v~~~~~V~~I~~~~~~-~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~s~~ll~ 307 (310)
.|++|++++.|++|+.++++ ++|+||++.+ +++.++++|+ .||||+| ++|||||-
T Consensus 227 ~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~-~vVLAagaIetpRLLL 285 (544)
T TIGR02462 227 ERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKAD-VYVLACGAVHNPQILV 285 (544)
T ss_pred CCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECC-EEEEccCchhhHHHHH
Confidence 78999999999999998533 6899999986 6888899998 6777775 99999984
No 8
>PRK07121 hypothetical protein; Validated
Probab=99.73 E-value=1.3e-16 Score=152.53 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=49.3
Q ss_pred hhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc-C-Cchhhhhh
Q psy17311 244 FLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS-F-RTTTLSRD 308 (310)
Q Consensus 244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG-~-~s~~ll~~ 308 (310)
.|...+++.|++|+++++|++|+.++ +++|+||++.++++.+.++|++.||+|+| + +++.++++
T Consensus 182 ~L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~~~ 247 (492)
T PRK07121 182 PLAKRAAALGVQIRYDTRATRLIVDD-DGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMVAR 247 (492)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEECC-CCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHHHH
Confidence 34455677899999999999999874 57999999987777778999557888886 4 45665544
No 9
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.72 E-value=7.1e-17 Score=155.75 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=47.3
Q ss_pred cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc-CC-chhhhh
Q psy17311 247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS-FR-TTTLSR 307 (310)
Q Consensus 247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG-~~-s~~ll~ 307 (310)
..+++.|++|+++++|++|+.+ +++|+||.+..+++.+.|+|+|.||||+| |. ++++++
T Consensus 225 ~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~~ 285 (564)
T PRK12845 225 AGVLRAGIPIWTETSLVRLTDD--GGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMRW 285 (564)
T ss_pred HHHHHCCCEEEecCEeeEEEec--CCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHHH
Confidence 4456689999999999999987 78999998887777788999878888885 64 455544
No 10
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.71 E-value=7.2e-17 Score=154.68 Aligned_cols=64 Identities=20% Similarity=0.347 Sum_probs=49.8
Q ss_pred hhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc-C-Cchhhhhh
Q psy17311 243 AFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS-F-RTTTLSRD 308 (310)
Q Consensus 243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG-~-~s~~ll~~ 308 (310)
.++.++.++.|++|+++++|++|+.+ +++|+||++..+++.++|+|+|.||+|+| + +++.++++
T Consensus 178 ~l~~~~~~~~gv~i~~~t~~~~Li~~--~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~~m~~~ 243 (513)
T PRK12837 178 RFLAALARFPNARLRLNTPLVELVVE--DGRVVGAVVERGGERRRVRARRGVLLAAGGFEQNDDMRAR 243 (513)
T ss_pred HHHHHHHhCCCCEEEeCCEEEEEEec--CCEEEEEEEEECCcEEEEEeCceEEEeCCCccCCHHHHHH
Confidence 34444445579999999999999998 88999999887787889999877888885 6 45555543
No 11
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.71 E-value=1.1e-16 Score=155.25 Aligned_cols=63 Identities=19% Similarity=0.304 Sum_probs=51.0
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc-C-Cchhhhhh
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS-F-RTTTLSRD 308 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG-~-~s~~ll~~ 308 (310)
|.+.+++.|++|+++++|++|+.|+ +++|+||.+.++++.++|+|++.||||+| | ++++++++
T Consensus 219 l~~~~~~~gv~i~~~~~~~~Li~d~-~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~~ 283 (584)
T PRK12835 219 LRLALKDAGVPLWLDSPMTELITDP-DGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRKE 283 (584)
T ss_pred HHHHHHhCCceEEeCCEEEEEEECC-CCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence 4455677899999999999999975 68999999987888888999877888875 5 55766654
No 12
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.70 E-value=1.6e-15 Score=145.28 Aligned_cols=59 Identities=19% Similarity=0.208 Sum_probs=43.5
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEecc-CC-chhhh
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVIS-FR-TTTLS 306 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaaG-~~-s~~ll 306 (310)
|...+++.|++++++++|++|+.+ +++|+||.+.. +++...++|+ .||+|+| +. ++.++
T Consensus 196 L~~~~~~~gv~i~~~t~v~~l~~~--~g~V~Gv~~~~~~g~~~~i~a~-~VVlAtGG~~~n~~m~ 257 (506)
T PRK06481 196 LLKNVQERKIPLFVNADVTKITEK--DGKVTGVKVKINGKETKTISSK-AVVVTTGGFGANKDMI 257 (506)
T ss_pred HHHHHHHcCCeEEeCCeeEEEEec--CCEEEEEEEEeCCCeEEEEecC-eEEEeCCCcccCHHHH
Confidence 334456689999999999999877 78999998875 4456678996 6666664 54 34443
No 13
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.69 E-value=3e-16 Score=151.60 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=49.4
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc-C-Cchhhhhh
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS-F-RTTTLSRD 308 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG-~-~s~~ll~~ 308 (310)
|.+.+++.|++|+++++|++|+.+ +++|+||++..+++.+.|+|++.||||+| + ++++++++
T Consensus 214 l~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~em~~~ 277 (557)
T PRK12844 214 MLEAALAAGVPLWTNTPLTELIVE--DGRVVGVVVVRDGREVLIRARRGVLLASGGFGHNAEMRKR 277 (557)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEEEECCeEEEEEecceEEEecCCccCCHHHHHH
Confidence 434567789999999999999998 78999999987787888999777788774 5 44555543
No 14
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.67 E-value=7.2e-16 Score=144.40 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=44.6
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEE--ECCeEEEEEcCeEEEEecc-CCc
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFI--RHGIKQTVLARREELEVIS-FRT 302 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~--~~g~~~~i~A~k~VIlaaG-~~s 302 (310)
|.+.+++.|++|+++++|++|+.+ +++|+||++. .+++.++|+|+ .||+|+| +..
T Consensus 147 l~~~~~~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~ 204 (417)
T PF00890_consen 147 LAKAAEEAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKAK-AVILATGGFGG 204 (417)
T ss_dssp HHHHHHHTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEES-EEEE----BGG
T ss_pred HHHHHhhcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEeee-EEEeccCcccc
Confidence 444556778999999999999999 8899999999 57888999998 7777775 766
No 15
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.64 E-value=4.2e-15 Score=139.56 Aligned_cols=56 Identities=18% Similarity=0.331 Sum_probs=42.4
Q ss_pred hhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc-CC
Q psy17311 243 AFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS-FR 301 (310)
Q Consensus 243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG-~~ 301 (310)
.++..+.++.|++|+++++|++|+.+ ++++.||.+.+++..+.++|+ .||+|+| +.
T Consensus 133 ~L~~~~~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~~~g~~~~i~Ak-~VILAtGG~~ 189 (433)
T PRK06175 133 ILLKKVKKRKNITIIENCYLVDIIEN--DNTCIGAICLKDNKQINIYSK-VTILATGGIG 189 (433)
T ss_pred HHHHHHHhcCCCEEEECcEeeeeEec--CCEEEEEEEEECCcEEEEEcC-eEEEccCccc
Confidence 33433445679999999999999987 789999987766666688996 6677764 54
No 16
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.64 E-value=2.1e-15 Score=143.31 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=43.2
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEE-ECCeEEEEEcCeEEEEecc-CCc
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFI-RHGIKQTVLARREELEVIS-FRT 302 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~-~~g~~~~i~A~k~VIlaaG-~~s 302 (310)
|...+++.|++++++++|++|+.+ +++++||.+. .+++...++|+ .||+|+| +.+
T Consensus 137 l~~~~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a~-~VIlAtGg~~~ 193 (466)
T PRK08274 137 LYRSAERLGVEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRAK-AVVLAAGGFES 193 (466)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEECC-EEEECCCCCCC
Confidence 434556789999999999999987 7899999885 45656678886 6777775 544
No 17
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.62 E-value=7.3e-15 Score=142.28 Aligned_cols=52 Identities=8% Similarity=0.019 Sum_probs=41.8
Q ss_pred cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CC
Q psy17311 247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS-FR 301 (310)
Q Consensus 247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~ 301 (310)
..+.+.|+++++++.+++|+.+ +|+|+||.+.+ +++.+.++|+ .||+|+| +.
T Consensus 144 ~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~ 198 (566)
T PRK06452 144 ERTSGLNVDFYNEWFSLDLVTD--NKKVVGIVAMQMKTLTPFFFKTK-AVVLATGGMG 198 (566)
T ss_pred HHHHhCCCEEEeCcEEEEEEEE--CCEEEEEEEEECCCCeEEEEEeC-eEEECCCccc
Confidence 4345579999999999999998 89999998875 5666788996 7777774 65
No 18
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.62 E-value=7.9e-15 Score=141.42 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=41.0
Q ss_pred cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEec-cCC
Q psy17311 249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVI-SFR 301 (310)
Q Consensus 249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaa-G~~ 301 (310)
.++.|++|++++.|++|+.++++++|+||.+.+++..+.++|+ .||+|+ |+.
T Consensus 145 ~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~Ak-aVILATGG~~ 197 (553)
T PRK07395 145 LQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAG-AVILATGGGG 197 (553)
T ss_pred hhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcC-EEEEcCCCCc
Confidence 3456999999999999998732489999988877877778886 666666 553
No 19
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.61 E-value=1.4e-14 Score=139.64 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=35.4
Q ss_pred cCCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 52 QLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 52 ~~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
..+.++||||||+|+||++||+++++. |.+|+||||+..
T Consensus 12 ~~~~~~DVlVIG~G~AGl~AAi~aae~-G~~VilleK~~~ 50 (541)
T PRK07804 12 GWRDAADVVVVGSGVAGLTAALAARRA-GRRVLVVTKAAL 50 (541)
T ss_pred ccccccCEEEECccHHHHHHHHHHHHc-CCeEEEEEccCC
Confidence 345689999999999999999999997 999999999974
No 20
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.61 E-value=1.1e-14 Score=141.51 Aligned_cols=55 Identities=15% Similarity=0.034 Sum_probs=42.8
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CC
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS-FR 301 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~ 301 (310)
|...+.+.|+++++++.|++|+.++ +++|+||.+.+ +++.+.|+|+ .||+|+| +.
T Consensus 149 L~~~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~ 206 (588)
T PRK08958 149 LYQQNLKNHTTIFSEWYALDLVKNQ-DGAVVGCTAICIETGEVVYFKAR-ATVLATGGAG 206 (588)
T ss_pred HHHHhhhcCCEEEeCcEEEEEEECC-CCEEEEEEEEEcCCCcEEEEEcC-eEEECCCCcc
Confidence 3344556899999999999999853 68999998853 6777789996 6777774 64
No 21
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.61 E-value=1.6e-14 Score=141.10 Aligned_cols=55 Identities=9% Similarity=0.117 Sum_probs=42.6
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEec-cCC
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVI-SFR 301 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaa-G~~ 301 (310)
|...+++.|++|++++.|++|+.++ +++|.||.+.+ +|+.+.++|+ .||+|+ |+.
T Consensus 172 L~~~a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~ 229 (617)
T PTZ00139 172 LYGQSLKYDCNFFIEYFALDLIMDE-DGECRGVIAMSMEDGSIHRFRAH-YTVIATGGYG 229 (617)
T ss_pred HHHHHHhCCCEEEeceEEEEEEECC-CCEEEEEEEEECCCCeEEEEECC-cEEEeCCCCc
Confidence 4344566899999999999999832 78999998754 6777889997 566666 564
No 22
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.60 E-value=1.8e-14 Score=135.88 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=44.9
Q ss_pred hhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEecc-C-Cchhhhh
Q psy17311 243 AFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVIS-F-RTTTLSR 307 (310)
Q Consensus 243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaaG-~-~s~~ll~ 307 (310)
..|.+.+++.|++|+++++|++|+.++ +++++||++.+ +++...+.++ .||+|+| + .++.+++
T Consensus 134 ~~l~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~~~a~-~VVlAtGg~~~n~~m~~ 199 (439)
T TIGR01813 134 QKLYKKAKKEGIDTRLNSKVEDLIQDD-QGTVVGVVVKGKGKGIYIKAAK-AVVLATGGFGSNKEMIA 199 (439)
T ss_pred HHHHHHHHHcCCEEEeCCEeeEeEECC-CCcEEEEEEEeCCCeEEEEecc-eEEEecCCCCCCHHHHH
Confidence 344455677899999999999999864 57899999875 4444556775 7777776 3 3344443
No 23
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.60 E-value=1.3e-14 Score=140.33 Aligned_cols=36 Identities=36% Similarity=0.545 Sum_probs=33.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
..++||||||+|.+|+++|++++++ |.+|+||||++
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~-G~~VivlEK~~ 37 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADA-GKRVLLLDQEN 37 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 3579999999999999999999998 99999999987
No 24
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.60 E-value=2e-14 Score=139.64 Aligned_cols=62 Identities=18% Similarity=0.344 Sum_probs=49.1
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc-C-Cchhhhhh
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS-F-RTTTLSRD 308 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG-~-~s~~ll~~ 308 (310)
|...+++.|++++++++|++|+.+ +++|+||.+.++++.+.+.|++.||+|+| + .+++++++
T Consensus 227 L~~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~~ 290 (578)
T PRK12843 227 LLYSLRARGVRILTQTDVESLETD--HGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRRE 290 (578)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHHH
Confidence 334556789999999999999987 78999999887777778998667888885 4 44566554
No 25
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.59 E-value=2.7e-14 Score=139.55 Aligned_cols=53 Identities=9% Similarity=0.165 Sum_probs=41.8
Q ss_pred cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEec-cCC
Q psy17311 247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVI-SFR 301 (310)
Q Consensus 247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaa-G~~ 301 (310)
..+.+.|++|++++.+++|+.++ +++|.||.+.+ +|+.+.|.|+ .||+|+ |+.
T Consensus 195 ~~a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g 250 (635)
T PLN00128 195 GQAMKHNTQFFVEYFALDLIMDS-DGACQGVIALNMEDGTLHRFRAH-STILATGGYG 250 (635)
T ss_pred HHHHhCCCEEEEeeEEEEEEEcC-CCEEEEEEEEEcCCCeEEEEEcC-eEEECCCCCc
Confidence 33456799999999999999863 57999998864 6777889997 677777 565
No 26
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.58 E-value=3.5e-14 Score=138.38 Aligned_cols=56 Identities=11% Similarity=0.100 Sum_probs=43.1
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CCc
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS-FRT 302 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~s 302 (310)
|...+++.|+++++++.|++|+.++ +++|+||.+.+ +|+.+.|.|+ .||+|+| +..
T Consensus 155 L~~~~~~~gi~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 213 (598)
T PRK09078 155 LYQQSLKHNAEFFIEYFALDLIMDD-GGVCRGVVAWNLDDGTLHRFRAH-MVVLATGGYGR 213 (598)
T ss_pred HHHHHhhcCCEEEEeEEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcc
Confidence 3344556899999999999999873 48999998853 6777889996 6777774 653
No 27
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.58 E-value=4.5e-14 Score=138.32 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=41.9
Q ss_pred ccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEec-cCCc
Q psy17311 248 VRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVI-SFRT 302 (310)
Q Consensus 248 ~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaa-G~~s 302 (310)
.+++.|++|++++.|++|+.+ +++|+||.+.+ ++..+.+.|+ .||+|+ |+..
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~d--~g~V~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~ 233 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVVV--DGRARGIVARNLVTGEIERHTAD-AVVLATGGYGN 233 (640)
T ss_pred HHHhcCCEEEeceEEEEEEEe--CCEEEEEEEEECCCCcEEEEECC-EEEECCCCccc
Confidence 456689999999999999998 78999999875 5666788997 666666 5653
No 28
>PLN02815 L-aspartate oxidase
Probab=99.58 E-value=4.3e-14 Score=137.06 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=41.1
Q ss_pred hhhcccCCCCcEEecCcEEEEEEEcCCCC--eEEEEEEEE--CCeEEEEEcCeEEEEec-cCC
Q psy17311 244 FLRPVRKRKNLHIAMRAHVTKILVNPATK--KAYGVQFIR--HGIKQTVLARREELEVI-SFR 301 (310)
Q Consensus 244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~--~v~GV~~~~--~g~~~~i~A~k~VIlaa-G~~ 301 (310)
+...+.++.|++|++++.+++|+.+++++ +|+||.+.+ ++..+.+.|+ .||||+ |+.
T Consensus 161 L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g 222 (594)
T PLN02815 161 LLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISK-VTLLASGGAG 222 (594)
T ss_pred HHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEec-eEEEcCCcce
Confidence 33333345699999999999999863233 499998863 6777788986 677777 464
No 29
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.57 E-value=5.4e-14 Score=136.08 Aligned_cols=60 Identities=22% Similarity=0.307 Sum_probs=47.5
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEec-cCCc-hhhh
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVI-SFRT-TTLS 306 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaa-G~~s-~~ll 306 (310)
|.+.+++.|++|+++++|++|+.+ +++|+||.+..+++.+.|+|++.||+|+ |+.+ +.++
T Consensus 214 L~~~~~~~gv~v~~~t~v~~l~~~--~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~ 275 (557)
T PRK07843 214 LRIGLQRAGVPVLLNTPLTDLYVE--DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMR 275 (557)
T ss_pred HHHHHHcCCCEEEeCCEEEEEEEe--CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHH
Confidence 334456789999999999999988 7899999987777788899987777766 5654 4443
No 30
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.57 E-value=4.4e-14 Score=137.25 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=41.0
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS 299 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG 299 (310)
|.+.+++.|+++++++.|++|+.+ +++|.||...+ +++...++|+ .||+|+|
T Consensus 141 L~~~~~~~gi~i~~~t~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak-aVVlATG 194 (575)
T PRK05945 141 LVNNLRRYGVTIYDEWYVMRLILE--DNQAKGVVMYHIADGRLEVVRAK-AVMFATG 194 (575)
T ss_pred HHHHHhhCCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCeEEEEECC-EEEECCC
Confidence 334456679999999999999988 78999998643 6666678996 6777775
No 31
>PRK12839 hypothetical protein; Provisional
Probab=99.57 E-value=4.5e-14 Score=136.75 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=44.5
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc-CCc-hhhhh
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS-FRT-TTLSR 307 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG-~~s-~~ll~ 307 (310)
|.+.+++.|++|+.++.|++|+.++ +++|+||.+.+.+...++.+.|.||+|+| +.. +.+++
T Consensus 220 L~~~a~~~Gv~i~~~t~v~~Li~~~-~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~~~ 283 (572)
T PRK12839 220 LLRSADDLGVDLRVSTSATSLTTDK-NGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDRRK 283 (572)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEECC-CCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHHHH
Confidence 3344567899999999999999864 68999999876444456666567888885 543 44433
No 32
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.56 E-value=4e-14 Score=137.63 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=42.9
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS 299 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG 299 (310)
|...+++.|++|+++++|++|+.+ +++|+||.+.+.+....+++++.||+|+|
T Consensus 220 L~~~~~~~Gv~i~~~~~v~~l~~~--~g~V~GV~~~~~~~~~~i~a~k~VVlAtG 272 (574)
T PRK12842 220 LAKSALDLGIPILTGTPARELLTE--GGRVVGARVIDAGGERRITARRGVVLACG 272 (574)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEEcCCceEEEEeCCEEEEcCC
Confidence 334456789999999999999998 88999999886554567888777888886
No 33
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.56 E-value=8.5e-14 Score=134.50 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=41.8
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CC
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS-FR 301 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~ 301 (310)
|...+++.|++|++++.|++|+.++ +++|+||.+.+ ++..+.|+|+ .||+|+| +.
T Consensus 140 L~~~~~~~gv~i~~~t~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~ 197 (543)
T PRK06263 140 LMEYLIKERIKILEEVMAIKLIVDE-NREVIGAIFLDLRNGEIFPIYAK-ATILATGGAG 197 (543)
T ss_pred HHHHHhcCCCEEEeCeEeeeeEEeC-CcEEEEEEEEECCCCcEEEEEcC-cEEECCCCCC
Confidence 3344556899999999999999873 44699998764 6767789996 6777775 64
No 34
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.55 E-value=4.4e-14 Score=136.39 Aligned_cols=57 Identities=16% Similarity=0.168 Sum_probs=48.7
Q ss_pred ccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCCchhhhh
Q psy17311 248 VRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFRTTTLSR 307 (310)
Q Consensus 248 ~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s~~ll~ 307 (310)
.+++.|++++++++|++|..+ +++++||++.+ +++...|+|+ .||+|+|.|+.+|++
T Consensus 158 ~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A~-~VVnAaG~wa~~l~~ 216 (546)
T PRK11101 158 DAKEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHAP-VVVNAAGIWGQHIAE 216 (546)
T ss_pred HHHhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEECC-EEEECCChhHHHHHH
Confidence 456789999999999999988 78999999865 4555689996 899999999999875
No 35
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.55 E-value=1.3e-13 Score=131.69 Aligned_cols=98 Identities=13% Similarity=0.034 Sum_probs=58.1
Q ss_pred hHHHHHHHcCCCCC-CCCCCCC---ccceecccccCCCc-ccchhhhhhhcccCC-CCcEEecCcEEEEEEEcCCCCeEE
Q psy17311 202 HDVEAGQELGYENR-DINGEKQ---TGFMVAQGTIRRGS-RCSTAKAFLRPVRKR-KNLHIAMRAHVTKILVNPATKKAY 275 (310)
Q Consensus 202 ~~~~~~~~~G~~~~-~~~~~~~---~g~~~~~~~~~~g~-r~s~~~~~l~~~~~~-~g~~v~~~~~V~~I~~~~~~~~v~ 275 (310)
..+++++++|+++. +.++... .+....+.....+. ........|.+.+++ .|++|++++.|++|+.+ +++++
T Consensus 86 ~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~--~g~v~ 163 (488)
T TIGR00551 86 SAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIE--TGRVV 163 (488)
T ss_pred HHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeecc--CCEEE
Confidence 67788889999883 2222111 11111111111111 111122233343444 79999999999999987 78999
Q ss_pred EEEEEECCeEEEEEcCeEEEEeccCCc
Q psy17311 276 GVQFIRHGIKQTVLARREELEVISFRT 302 (310)
Q Consensus 276 GV~~~~~g~~~~i~A~k~VIlaaG~~s 302 (310)
||.+.+.+....++|+ .||+|+|-++
T Consensus 164 Gv~~~~~~~~~~i~A~-~VVlAtGG~~ 189 (488)
T TIGR00551 164 GVWVWNRETVETCHAD-AVVLATGGAG 189 (488)
T ss_pred EEEEEECCcEEEEEcC-EEEECCCccc
Confidence 9988765555678886 7777776333
No 36
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.55 E-value=8.2e-14 Score=135.49 Aligned_cols=56 Identities=16% Similarity=0.058 Sum_probs=45.3
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCc
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRT 302 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s 302 (310)
|.+.+++.|++|+++++|++|+.+ +++|+||.+.+++..+.++|++.||+|+|-++
T Consensus 223 L~~~a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 223 LLKSAEDLGVRIWESAPARELLRE--DGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 345567789999999999999988 78999999887666678899568888887433
No 37
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.54 E-value=1.5e-13 Score=133.64 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=32.7
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
.+||||||+|+||++||+++++. |.+|+||||++.
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~-G~~V~lieK~~~ 37 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEA-GVHVDLFSLVPV 37 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHc-CCcEEEEEccCC
Confidence 46999999999999999999997 999999999874
No 38
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.54 E-value=2.1e-13 Score=141.66 Aligned_cols=36 Identities=31% Similarity=0.419 Sum_probs=33.6
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
.++||||||+|.||++||+++++. |.+|+||||++.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~-Ga~VivlEK~~~ 443 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASC-GAQVILLEKEAK 443 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEEccCC
Confidence 469999999999999999999997 999999999864
No 39
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.54 E-value=1.7e-13 Score=132.85 Aligned_cols=98 Identities=16% Similarity=0.121 Sum_probs=58.8
Q ss_pred hhHHHHHHHcCCCC-CCCCCCC---CccceecccccC--CCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeE
Q psy17311 201 LHDVEAGQELGYEN-RDINGEK---QTGFMVAQGTIR--RGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKA 274 (310)
Q Consensus 201 ~~~~~~~~~~G~~~-~~~~~~~---~~g~~~~~~~~~--~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v 274 (310)
+..+++++++|+++ .+.++.. ..|......... +........++...+.+..|++++.++.|++|+.+ +++|
T Consensus 89 ~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~--~g~v 166 (580)
T TIGR01176 89 PKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD--DGRV 166 (580)
T ss_pred HHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEee--CCEE
Confidence 36778889999998 3333321 111111111111 11111112223322334469999999999999998 7899
Q ss_pred EEEEEEE--CCeEEEEEcCeEEEEecc-CC
Q psy17311 275 YGVQFIR--HGIKQTVLARREELEVIS-FR 301 (310)
Q Consensus 275 ~GV~~~~--~g~~~~i~A~k~VIlaaG-~~ 301 (310)
.||...+ +|+.+.++|+ .||+|+| +.
T Consensus 167 ~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~ 195 (580)
T TIGR01176 167 CGLVAIEMAEGRLVTILAD-AVVLATGGAG 195 (580)
T ss_pred EEEEEEEcCCCcEEEEecC-EEEEcCCCCc
Confidence 9998754 6777789996 7777775 53
No 40
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.53 E-value=2.5e-13 Score=132.27 Aligned_cols=53 Identities=9% Similarity=0.048 Sum_probs=41.0
Q ss_pred cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CC
Q psy17311 247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS-FR 301 (310)
Q Consensus 247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~ 301 (310)
..+.+.|++++.++.|++|+.++ +++|.||.+.+ +++...++|+ .||+|+| +.
T Consensus 156 ~~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~ 211 (591)
T PRK07057 156 QQNVAAKTQFFVEWMALDLIRDA-DGDVLGVTALEMETGDVYILEAK-TTLFATGGAG 211 (591)
T ss_pred HHHHhcCCEEEeCcEEEEEEEcC-CCeEEEEEEEEcCCCeEEEEECC-eEEECCCCcc
Confidence 44456899999999999999863 58999998853 5666788886 6777774 54
No 41
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.53 E-value=1.9e-13 Score=132.84 Aligned_cols=94 Identities=13% Similarity=0.153 Sum_probs=57.0
Q ss_pred hHHHHHHHcCCCCC-CCCCCC---C-ccceecccccCCCcc--cchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeE
Q psy17311 202 HDVEAGQELGYENR-DINGEK---Q-TGFMVAQGTIRRGSR--CSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKA 274 (310)
Q Consensus 202 ~~~~~~~~~G~~~~-~~~~~~---~-~g~~~~~~~~~~g~r--~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v 274 (310)
..+++++++|+++. +.++.. . .|.... ........ .....+++..+.+..|+++++++.|++|+.+ +++|
T Consensus 91 ~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~-r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~--~g~v 167 (582)
T PRK09231 91 TEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIE-RTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVD--DGHV 167 (582)
T ss_pred HHHHHHHHcCCCcccCCCCceeeeccccccCC-eeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEEEe--CCEE
Confidence 67788899999983 223211 1 111111 11111111 1112223323334468999999999999998 7899
Q ss_pred EEEEEEE--CCeEEEEEcCeEEEEecc
Q psy17311 275 YGVQFIR--HGIKQTVLARREELEVIS 299 (310)
Q Consensus 275 ~GV~~~~--~g~~~~i~A~k~VIlaaG 299 (310)
.||.+.+ ++....++|+ .||+|+|
T Consensus 168 ~Gv~~~~~~~g~~~~i~Ak-aVIlATG 193 (582)
T PRK09231 168 RGLVAMNMMEGTLVQIRAN-AVVMATG 193 (582)
T ss_pred EEEEEEEcCCCcEEEEECC-EEEECCC
Confidence 9998753 6767788996 7777775
No 42
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.53 E-value=1.2e-14 Score=132.47 Aligned_cols=59 Identities=20% Similarity=0.180 Sum_probs=45.1
Q ss_pred hhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhhhc
Q psy17311 244 FLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRDV 309 (310)
Q Consensus 244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~~~ 309 (310)
.|...+++.|++|+++++|++|..+ ++++.||++. +| +++|+ .||+|+|.|+++|++.+
T Consensus 152 ~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~~-~g---~i~ad-~vV~a~G~~s~~l~~~~ 210 (358)
T PF01266_consen 152 ALAAEAQRAGVEIRTGTEVTSIDVD--GGRVTGVRTS-DG---EIRAD-RVVLAAGAWSPQLLPLL 210 (358)
T ss_dssp HHHHHHHHTT-EEEESEEEEEEEEE--TTEEEEEEET-TE---EEEEC-EEEE--GGGHHHHHHTT
T ss_pred hhHHHHHHhhhhccccccccchhhc--cccccccccc-cc---ccccc-eeEecccccceeeeecc
Confidence 3444556679999999999999999 8999999874 33 48886 89999999999987654
No 43
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.53 E-value=1.9e-13 Score=133.00 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=39.0
Q ss_pred cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc-C
Q psy17311 249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS-F 300 (310)
Q Consensus 249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~ 300 (310)
.+..|++++.++.|++|+.+ +++++||.+.+ +++...++|+ .||+|+| +
T Consensus 148 ~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~ 199 (577)
T PRK06069 148 LRFDNIHFYDEHFVTSLIVE--NGVFKGVTAIDLKRGEFKVFQAK-AGIIATGGA 199 (577)
T ss_pred HhcCCCEEEECCEEEEEEEE--CCEEEEEEEEEcCCCeEEEEECC-cEEEcCchh
Confidence 34479999999999999988 78999998754 5666688996 6666664 5
No 44
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.52 E-value=2.1e-13 Score=132.59 Aligned_cols=52 Identities=10% Similarity=0.010 Sum_probs=41.5
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS 299 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG 299 (310)
|.+.+++.|+++++++.|++|+.+ +++|+||.+.+ +++...++|+ .||+|+|
T Consensus 135 L~~~~~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlAtG 188 (566)
T TIGR01812 135 LYEQCLKLGVSFFNEYFALDLIHD--DGRVRGVVAYDLKTGEIVFFRAK-AVVLATG 188 (566)
T ss_pred HHHHHHHcCCEEEeccEEEEEEEe--CCEEEEEEEEECCCCcEEEEECC-eEEECCC
Confidence 334455569999999999999998 79999998864 5666788996 7777776
No 45
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.52 E-value=1.7e-13 Score=131.44 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=38.9
Q ss_pred CCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEec-cCC
Q psy17311 250 KRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVI-SFR 301 (310)
Q Consensus 250 ~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaa-G~~ 301 (310)
++.|++++.++.|++|+.+ +++|+||.+.+++..+.++|+ .||+|+ |+.
T Consensus 148 ~~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~~~~i~Ak-~VVLATGG~~ 197 (513)
T PRK07512 148 ATPSITVLEGAEARRLLVD--DGAVAGVLAATAGGPVVLPAR-AVVLATGGIG 197 (513)
T ss_pred hCCCCEEEECcChhheeec--CCEEEEEEEEeCCeEEEEECC-EEEEcCCCCc
Confidence 3469999999999999887 789999998766655678997 566666 564
No 46
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.52 E-value=2.2e-13 Score=133.36 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=33.4
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
.++||||||+|+||++||++|++. |.+|+||||++.
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~-G~~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARER-GLRVAVVCKSLF 42 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHC-CCCEEEEeccCC
Confidence 369999999999999999999997 999999999864
No 47
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.51 E-value=2.4e-13 Score=133.56 Aligned_cols=54 Identities=13% Similarity=0.218 Sum_probs=43.1
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CC
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS-FR 301 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~ 301 (310)
|...+.+.|++|+.++.|++|+.+ +++|.||.+.+ +|+.+.+.|+ .||+|+| +.
T Consensus 164 L~~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~G~~~~i~Ak-aVVLATGG~g 220 (657)
T PRK08626 164 VDNEAIKLGVPVHDRKEAIALIHD--GKRCYGAVVRCLITGELRAYVAK-ATLIATGGYG 220 (657)
T ss_pred HHHHHHhCCCEEEeeEEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcC-eEEECCCccc
Confidence 334456789999999999999998 89999999875 6777788996 6666664 54
No 48
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.51 E-value=3.5e-13 Score=129.16 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=38.3
Q ss_pred CCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEec-cCC
Q psy17311 252 KNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVI-SFR 301 (310)
Q Consensus 252 ~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaa-G~~ 301 (310)
.|+++++++.|++|+.+ ++++.||.+.+ +++.+.++|+ .||+|+ |+.
T Consensus 142 ~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~g~~~~i~Ak-~VVlATGG~~ 190 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIE--NGRCIGVLTKDSEGKLKRYYAD-YVVLASGGCG 190 (510)
T ss_pred cCCEEEECeEhhheeec--CCEEEEEEEEECCCcEEEEEcC-eEEEecCCCc
Confidence 69999999999999988 78999998876 5666688896 666666 454
No 49
>PRK08275 putative oxidoreductase; Provisional
Probab=99.51 E-value=2.6e-13 Score=131.35 Aligned_cols=56 Identities=18% Similarity=0.144 Sum_probs=42.5
Q ss_pred hhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CC
Q psy17311 244 FLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS-FR 301 (310)
Q Consensus 244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~ 301 (310)
.|.+.+++.|++|++++.|++|+.++ ++++.||.+.+ ++....++|+ .||+|+| +.
T Consensus 142 ~L~~~~~~~gv~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~ 200 (554)
T PRK08275 142 VLYRQLKRARVLITNRIMATRLLTDA-DGRVAGALGFDCRTGEFLVIRAK-AVILCCGAAG 200 (554)
T ss_pred HHHHHHHHCCCEEEcceEEEEEEEcC-CCeEEEEEEEecCCCcEEEEECC-EEEECCCCcc
Confidence 44454566899999999999999864 57899998754 5666778886 6777775 53
No 50
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.51 E-value=4.4e-13 Score=130.46 Aligned_cols=57 Identities=14% Similarity=0.029 Sum_probs=42.3
Q ss_pred hhhcccCCCCcEEecCcEEEEEEEcCC--CCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CC
Q psy17311 244 FLRPVRKRKNLHIAMRAHVTKILVNPA--TKKAYGVQFIR--HGIKQTVLARREELEVIS-FR 301 (310)
Q Consensus 244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~--~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~ 301 (310)
.|...+++.|+++++++.|++|+.+++ +++|+||.+.+ +++.+.++|+ .||+|+| +.
T Consensus 145 ~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~ 206 (583)
T PRK08205 145 TLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAK-AVVFATGGSG 206 (583)
T ss_pred HHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeC-eEEECCCCCc
Confidence 344555678999999999999998721 18999998753 5666788996 6666664 54
No 51
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.50 E-value=4.9e-13 Score=130.51 Aligned_cols=175 Identities=19% Similarity=0.183 Sum_probs=95.7
Q ss_pred CcccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCCCCCCcchhhhHHhhhcCCCCCccccccCCcccCCCCCCcccc
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSW 133 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 133 (310)
.++||||||+|+||++||++++++ +|.+|+||||++......
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~------------------------------------- 52 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGA------------------------------------- 52 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcc-------------------------------------
Confidence 368999999999999999999995 389999999986421100
Q ss_pred CCcccccccccccCeeeecCCccchhhHHh---cCCCCCCcCChHHHHHHhhhcCCCCCCCCCCCCCCCChhHHHHHHHc
Q psy17311 134 PRGKVLGGSSVLNYMLYVRGNRFDYDHWES---LGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHDVEAGQEL 210 (310)
Q Consensus 134 ~~g~~lGGss~~n~~~~~r~~~~d~~~w~~---~g~~gw~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 210 (310)
..+|.+.++... ....+.+.|.+ ....++..+++...|- ...+..+++++++
T Consensus 53 ----~a~G~~~~~~~~---~~~ds~e~~~~d~~~~~~~~~d~~lv~~~~------------------~~s~~~i~~L~~~ 107 (608)
T PRK06854 53 ----VAQGLSAINAYI---GEGETPEDYVRYVRKDLMGIVREDLVYDIA------------------RHVDSVVHLFEEW 107 (608)
T ss_pred ----cccCcccccccc---ccCCCHHHHHHHHHHhccCCCCHHHHHHHH------------------HhHHHHHHHHHHc
Confidence 001111111111 11112222211 0111111122221111 1123677888899
Q ss_pred CCCCC-CCCCCCCccceecccccCCCcccchhhhhhhcccCC-CCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEE
Q psy17311 211 GYENR-DINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKR-KNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQ 286 (310)
Q Consensus 211 G~~~~-~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~-~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~ 286 (310)
|+++. +.++..... .... ....|. .....|...+++ .|++++.+++|++|+.+ +++|+||.+.+ +++.+
T Consensus 108 Gv~f~~~~~G~~~~~-g~~~-~~~~G~---~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~ 180 (608)
T PRK06854 108 GLPIWKDENGKYVRR-GRWQ-IMINGE---SYKPIVAEAAKKALGDNVLNRVFITDLLVD--DNRIAGAVGFSVRENKFY 180 (608)
T ss_pred CCeeeecCCCCcccc-CCcc-CCCChH---HHHHHHHHHHHhcCCCEEEeCCEEEEEEEe--CCEEEEEEEEEccCCcEE
Confidence 99873 222211100 0000 001111 122223333444 45999999999999988 78999997643 56666
Q ss_pred EEEcCeEEEEecc
Q psy17311 287 TVLARREELEVIS 299 (310)
Q Consensus 287 ~i~A~k~VIlaaG 299 (310)
.+.|+ .||+|+|
T Consensus 181 ~i~Ak-aVILATG 192 (608)
T PRK06854 181 VFKAK-AVIVATG 192 (608)
T ss_pred EEECC-EEEECCC
Confidence 88886 6777775
No 52
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.48 E-value=5.7e-13 Score=128.48 Aligned_cols=53 Identities=11% Similarity=0.197 Sum_probs=40.8
Q ss_pred ccCCCCcEEecCcEEEEEEEcC----CCCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CC
Q psy17311 248 VRKRKNLHIAMRAHVTKILVNP----ATKKAYGVQFIR--HGIKQTVLARREELEVIS-FR 301 (310)
Q Consensus 248 ~~~~~g~~v~~~~~V~~I~~~~----~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~ 301 (310)
+.+++|++|+++++|++|+.++ ++++|+||.+.+ +++...|+|+ .||+|+| +.
T Consensus 148 ~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~ 207 (536)
T PRK09077 148 ARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAK-FVVLATGGAS 207 (536)
T ss_pred HHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecC-eEEECCCCCC
Confidence 3455799999999999999862 138999999864 5767788986 7777775 54
No 53
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.48 E-value=6e-13 Score=129.67 Aligned_cols=49 Identities=14% Similarity=0.052 Sum_probs=39.1
Q ss_pred CCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEec-cCC
Q psy17311 251 RKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVI-SFR 301 (310)
Q Consensus 251 ~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaa-G~~ 301 (310)
+.|++|+++++|++|+.++ +++|+||.+.+ +++.+.+.|+ .||+|+ |+.
T Consensus 145 ~~gV~i~~~t~v~~Li~dd-~grV~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g 196 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVD-GNRARGIIARNLVTGEIETHSAD-AVILATGGYG 196 (603)
T ss_pred cCCcEEEeCcEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEcC-EEEECCCCCc
Confidence 4589999999999999863 57999999875 5666788997 666666 564
No 54
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.45 E-value=1.9e-12 Score=131.66 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=38.5
Q ss_pred CCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEec-cCC
Q psy17311 252 KNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVI-SFR 301 (310)
Q Consensus 252 ~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaa-G~~ 301 (310)
.++.+.+++.+++|+.+ +|+|+||.+.+ +|+.+.|+|+ .||+|+ |+.
T Consensus 156 ~~i~~~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g 205 (897)
T PRK13800 156 ERIRIENRLMPVRVLTE--GGRAVGAAALNTRTGEFVTVGAK-AVILATGPCG 205 (897)
T ss_pred CCcEEEeceeeEEEEee--CCEEEEEEEEecCCCcEEEEECC-EEEECCCccc
Confidence 48999999999999988 88999998754 6777889996 677777 564
No 55
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.44 E-value=1.1e-12 Score=114.69 Aligned_cols=57 Identities=14% Similarity=0.150 Sum_probs=42.2
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-----CC---eEEEEEcCeEEEEeccCCch
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-----HG---IKQTVLARREELEVISFRTT 303 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-----~g---~~~~i~A~k~VIlaaG~~s~ 303 (310)
|...+.+.|++++.+++|++|..++ ++++.||.+.. .+ +...++|+ .||.|+|.++.
T Consensus 110 L~~~A~~~Gv~I~~~t~V~dl~~~~-~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak-~VI~ATG~~a~ 174 (257)
T PRK04176 110 LAAAAIDAGAKIFNGVSVEDVILRE-DPRVAGVVINWTPVEMAGLHVDPLTIEAK-AVVDATGHDAE 174 (257)
T ss_pred HHHHHHHcCCEEEcCceeceeeEeC-CCcEEEEEEccccccccCCCCCcEEEEcC-EEEEEeCCCcH
Confidence 4344566899999999999999863 44899998752 11 34578996 88888886653
No 56
>PLN02661 Putative thiazole synthesis
Probab=99.43 E-value=1.6e-12 Score=116.81 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=33.0
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.++||+|||+|++|+++|++|++++|.+|+||||+.
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 368999999999999999999986689999999975
No 57
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.42 E-value=1.2e-12 Score=122.34 Aligned_cols=60 Identities=12% Similarity=0.052 Sum_probs=43.1
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCe--EEEEEcCeEEEEeccCCchhhhhh
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGI--KQTVLARREELEVISFRTTTLSRD 308 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~--~~~i~A~k~VIlaaG~~s~~ll~~ 308 (310)
|...+++.|++++++++|++|..+ ++.++ |.+.+++. ..+++|+ .||+|+|.|+.+|++.
T Consensus 203 l~~~a~~~G~~i~~~~~V~~i~~~--~~~~~-v~~~~~~~~~~~~i~a~-~vV~a~G~~s~~l~~~ 264 (410)
T PRK12409 203 LAAACARLGVQFRYGQEVTSIKTD--GGGVV-LTVQPSAEHPSRTLEFD-GVVVCAGVGSRALAAM 264 (410)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEEe--CCEEE-EEEEcCCCCccceEecC-EEEECCCcChHHHHHH
Confidence 335567789999999999999876 55543 44433321 2357886 8999999999888753
No 58
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.42 E-value=2e-12 Score=112.73 Aligned_cols=36 Identities=28% Similarity=0.425 Sum_probs=33.4
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
.+|||+|||+|++|+++|++|++. |.+|+||||...
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~-G~~V~vlEk~~~ 55 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSLA 55 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 369999999999999999999998 999999999863
No 59
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.42 E-value=1.8e-12 Score=121.84 Aligned_cols=58 Identities=12% Similarity=0.089 Sum_probs=51.2
Q ss_pred ccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCCchhhhhhc
Q psy17311 248 VRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFRTTTLSRDV 309 (310)
Q Consensus 248 ~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s~~ll~~~ 309 (310)
-+...|.++++.++|++++.+ ++ +.||++++ +|+.+.|+|+ .||.|+|.|+.+|++..
T Consensus 173 ~A~~~Ga~il~~~~v~~~~re--~~-v~gV~~~D~~tg~~~~ira~-~VVNAaGpW~d~i~~~~ 232 (532)
T COG0578 173 DAAEHGAEILTYTRVESLRRE--GG-VWGVEVEDRETGETYEIRAR-AVVNAAGPWVDEILEMA 232 (532)
T ss_pred HHHhcccchhhcceeeeeeec--CC-EEEEEEEecCCCcEEEEEcC-EEEECCCccHHHHHHhh
Confidence 356789999999999999999 67 99999986 6889999996 99999999999987653
No 60
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.42 E-value=4.7e-12 Score=123.06 Aligned_cols=92 Identities=15% Similarity=0.072 Sum_probs=55.8
Q ss_pred hhHHHHHHHcCCCCCCC--CCCCC-ccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCC-CCeEEE
Q psy17311 201 LHDVEAGQELGYENRDI--NGEKQ-TGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPA-TKKAYG 276 (310)
Q Consensus 201 ~~~~~~~~~~G~~~~~~--~~~~~-~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~-~~~v~G 276 (310)
+..++++.++|+++... ++... .|. .....+. ......+....++.+++++.+++|++|+.+++ +|+|+|
T Consensus 91 ~~~i~~L~~~Gv~F~~~~~~G~~~~~g~----~~~~~gG--~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~G 164 (614)
T TIGR02061 91 DDSVHLFEEWGLPLWIKPEDGKYVREGR----WQIMIHG--ESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAG 164 (614)
T ss_pred HHHHHHHHHcCCCceecCCCCccccCCC----cccCcCc--hhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEE
Confidence 37778888999998321 22111 110 0001111 11222233334445689999999999999731 179999
Q ss_pred EEEEE--CCeEEEEEcCeEEEEecc
Q psy17311 277 VQFIR--HGIKQTVLARREELEVIS 299 (310)
Q Consensus 277 V~~~~--~g~~~~i~A~k~VIlaaG 299 (310)
|.+.+ +++.+.|.|+ .||+|+|
T Consensus 165 v~~~~~~~g~~~~i~Ak-aVVLATG 188 (614)
T TIGR02061 165 AVGFNVRANEVHVFKAK-TVIVAAG 188 (614)
T ss_pred EEEEEeCCCcEEEEECC-EEEECCC
Confidence 98754 6777789996 7777775
No 61
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.42 E-value=5.5e-13 Score=119.53 Aligned_cols=169 Identities=21% Similarity=0.215 Sum_probs=97.0
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCCcchhhhHHhhhcCCCCCccccccCCcccCCCCCCccccC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWP 134 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 134 (310)
+.+||||||+|+||+.||..+++. |.+|+|||+++....- +.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~-G~~V~lid~~~k~GrK-----------------------------------il-- 43 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKA-GRRVLLIDKGPKLGRK-----------------------------------IL-- 43 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhc-CCEEEEEecCccccce-----------------------------------eE--
Confidence 468999999999999999999997 9999999999854420 00
Q ss_pred CcccccccccccCeeeecCCccchhhHH-hcCCCCCCcCChHHHHHHhhhcCCCCCCCCCCCCCCCChhHHHHHHHcCCC
Q psy17311 135 RGKVLGGSSVLNYMLYVRGNRFDYDHWE-SLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHDVEAGQELGYE 213 (310)
Q Consensus 135 ~g~~lGGss~~n~~~~~r~~~~d~~~w~-~~g~~gw~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~G~~ 213 (310)
+-||+ ..| -.+...++++. ..+.. . .|-++. +. .+...+++++++.+|++
T Consensus 44 ---~sGgG-rCN-----~Tn~~~~~~~ls~~p~~-------~-~fl~sa-----------l~-~ft~~d~i~~~e~~Gi~ 94 (408)
T COG2081 44 ---MSGGG-RCN-----FTNSEAPDEFLSRNPGN-------G-HFLKSA-----------LA-RFTPEDFIDWVEGLGIA 94 (408)
T ss_pred ---ecCCC-Ccc-----ccccccHHHHHHhCCCc-------c-hHHHHH-----------HH-hCCHHHHHHHHHhcCCe
Confidence 11111 111 11222233331 11100 0 011110 00 11222888999999998
Q ss_pred CCCCCCCCCccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCe
Q psy17311 214 NRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARR 292 (310)
Q Consensus 214 ~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k 292 (310)
+..-. .|..++ ......+...+++ ..+++.|++|+++++|.+|..+ + .+..+.. +|. +|++++
T Consensus 95 ~~e~~----~Gr~Fp----~sdkA~~Iv~~ll-~~~~~~gV~i~~~~~v~~v~~~--~---~~f~l~t~~g~--~i~~d~ 158 (408)
T COG2081 95 LKEED----LGRMFP----DSDKASPIVDALL-KELEALGVTIRTRSRVSSVEKD--D---SGFRLDTSSGE--TVKCDS 158 (408)
T ss_pred eEEcc----CceecC----CccchHHHHHHHH-HHHHHcCcEEEecceEEeEEec--C---ceEEEEcCCCC--EEEccE
Confidence 72211 122221 1111122344444 4567899999999999999987 4 2333332 453 789986
Q ss_pred EEEEeccCCchhhh
Q psy17311 293 EELEVISFRTTTLS 306 (310)
Q Consensus 293 ~VIlaaG~~s~~ll 306 (310)
.||+++|.--|++-
T Consensus 159 lilAtGG~S~P~lG 172 (408)
T COG2081 159 LILATGGKSWPKLG 172 (408)
T ss_pred EEEecCCcCCCCCC
Confidence 66666676667553
No 62
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.42 E-value=3e-12 Score=122.73 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=45.8
Q ss_pred ccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311 248 VRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFRTTTLSRD 308 (310)
Q Consensus 248 ~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s~~ll~~ 308 (310)
.+++.|++++.+++|++|..+ ++. .+|.+.+ +|+..+|+|+ .||+|+|.|+.+|+++
T Consensus 164 ~A~~~Ga~i~~~~~V~~i~~~--~~~-~~v~~~~~~~g~~~~i~a~-~VVnAaG~wa~~l~~~ 222 (508)
T PRK12266 164 DAAERGAEILTRTRVVSARRE--NGL-WHVTLEDTATGKRYTVRAR-ALVNAAGPWVKQFLDD 222 (508)
T ss_pred HHHHcCCEEEcCcEEEEEEEe--CCE-EEEEEEEcCCCCEEEEEcC-EEEECCCccHHHHHhh
Confidence 356789999999999999876 554 4677664 4656789996 9999999999998764
No 63
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.41 E-value=2.2e-12 Score=123.74 Aligned_cols=184 Identities=21% Similarity=0.230 Sum_probs=106.7
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCCcchhhhHHhhhcCCCCCccccccCCcccCCCCCCccccC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWP 134 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 134 (310)
.+|||||||+|.|||.||.++++. |.+|+||||.....+.+..
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~-g~~V~l~~K~~~~rg~t~~------------------------------------ 47 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEA-GLKVALLSKAPPKRGHTVA------------------------------------ 47 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhc-CCcEEEEEccccCCCchhh------------------------------------
Confidence 579999999999999999999998 8999999998754421110
Q ss_pred CcccccccccccCeeeecCC-ccc-hh-hHHh-cCCCCC-CcCChHHHHHHhhhcCCCCCCCCCCCCCCCChhHHHHHHH
Q psy17311 135 RGKVLGGSSVLNYMLYVRGN-RFD-YD-HWES-LGNPGW-GYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHDVEAGQE 209 (310)
Q Consensus 135 ~g~~lGGss~~n~~~~~r~~-~~d-~~-~w~~-~g~~gw-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~ 209 (310)
..|| +|........ +.| .+ .|.+ ....+| ..++...+|.+. .|..+.++++
T Consensus 48 ---a~gG---~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~dqd~i~~~~~~------------------ap~~v~~Le~ 103 (562)
T COG1053 48 ---AQGG---INAALGNTVDVEGDSPELHFYDTVKGGDGLGDQDAVEAFADE------------------APEAVDELEK 103 (562)
T ss_pred ---hccc---ccccccCcccccCCCHHHHHHHHHhccCCcCCHHHHHHHHHh------------------hHHHHHHHHH
Confidence 1122 1222110110 101 11 1111 122334 334444444322 3367788899
Q ss_pred cCCCC-CCCCCC---CCccceecccccCCCcccc--hhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--
Q psy17311 210 LGYEN-RDINGE---KQTGFMVAQGTIRRGSRCS--TAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-- 281 (310)
Q Consensus 210 ~G~~~-~~~~~~---~~~g~~~~~~~~~~g~r~s--~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-- 281 (310)
.|+++ +..++. +..|......++..+.+.. ....+.....+..+++++.+..|++|+.++ ++++.||...+
T Consensus 104 ~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~-~~~v~Gvv~~~~~ 182 (562)
T COG1053 104 WGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDD-GGGVAGVVARDLR 182 (562)
T ss_pred hCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhhhheecC-CCcEEEEEEEEec
Confidence 99998 344431 1122222122333333322 223333333344778999999999999884 44499998764
Q ss_pred CCeEEEEEcCeEEEEec-cCC
Q psy17311 282 HGIKQTVLARREELEVI-SFR 301 (310)
Q Consensus 282 ~g~~~~i~A~k~VIlaa-G~~ 301 (310)
+++.+.++++ .||+|+ |+.
T Consensus 183 ~g~~~~~~ak-avilaTGG~g 202 (562)
T COG1053 183 TGELYVFRAK-AVILATGGAG 202 (562)
T ss_pred CCcEEEEecC-cEEEccCCce
Confidence 7888888885 666666 565
No 64
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.41 E-value=2.3e-12 Score=123.48 Aligned_cols=58 Identities=16% Similarity=0.073 Sum_probs=46.1
Q ss_pred cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEEC-CeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311 247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRH-GIKQTVLARREELEVISFRTTTLSRD 308 (310)
Q Consensus 247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~-g~~~~i~A~k~VIlaaG~~s~~ll~~ 308 (310)
..+++.|++++.+++|++|..+ ++ ..+|.+.++ |++.+++|+ .||.|+|.|+.+|++.
T Consensus 163 ~~a~~~Ga~i~~~~~V~~i~~~--~~-~~~v~~~~~~g~~~~i~a~-~VVnAaG~wa~~l~~~ 221 (502)
T PRK13369 163 LDAAERGATILTRTRCVSARRE--GG-LWRVETRDADGETRTVRAR-ALVNAAGPWVTDVIHR 221 (502)
T ss_pred HHHHHCCCEEecCcEEEEEEEc--CC-EEEEEEEeCCCCEEEEEec-EEEECCCccHHHHHhh
Confidence 3456789999999999999887 44 356776653 566789996 9999999999998763
No 65
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.40 E-value=2.8e-12 Score=125.51 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=49.3
Q ss_pred cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311 247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFRTTTLSRD 308 (310)
Q Consensus 247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s~~ll~~ 308 (310)
..+++.|++++.+++|++|..++.++++.||++.+ +++.+.|+++ .||+|+|.|+.+|++.
T Consensus 240 ~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~-~VVnAaGaws~~l~~~ 302 (627)
T PLN02464 240 CTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAK-VVVNAAGPFCDEVRKM 302 (627)
T ss_pred HHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeC-EEEECCCHhHHHHHHh
Confidence 44677899999999999998862136899998865 4556678986 8999999999998874
No 66
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.40 E-value=8.5e-13 Score=123.59 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=44.5
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRD 308 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~~ 308 (310)
|...+++.|++|+++++|++|..+ ++++.+|+.. ++ +++++ .||+|+|.|+..|++.
T Consensus 207 l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~v~t~-~~---~~~a~-~VV~a~G~~~~~l~~~ 263 (416)
T PRK00711 207 LAAMAEQLGVKFRFNTPVDGLLVE--GGRITGVQTG-GG---VITAD-AYVVALGSYSTALLKP 263 (416)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEec--CCEEEEEEeC-Cc---EEeCC-EEEECCCcchHHHHHH
Confidence 334556789999999999999887 6777777643 33 57886 8999999999888754
No 67
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.40 E-value=1.4e-12 Score=120.80 Aligned_cols=89 Identities=19% Similarity=0.156 Sum_probs=47.7
Q ss_pred hHHHHHHHcCCCCC-CCCCCCCccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEE
Q psy17311 202 HDVEAGQELGYENR-DINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFI 280 (310)
Q Consensus 202 ~~~~~~~~~G~~~~-~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~ 280 (310)
++++.++++|++.. ..+ |..++.. ....+.... |...+++.|++|+++++|++|..+ ++.+..|++.
T Consensus 81 d~~~ff~~~Gv~~~~~~~-----gr~fP~s----~~a~~Vv~~-L~~~l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~~ 148 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEED-----GRVFPKS----DKASSVVDA-LLEELKRLGVEIHFNTRVKSIEKK--EDGVFGVKTK 148 (409)
T ss_dssp HHHHHHHHTT--EEE-ST-----TEEEETT------HHHHHHH-HHHHHHHHT-EEE-S--EEEEEEE--TTEEEEEEET
T ss_pred HHHHHHHhcCCeEEEcCC-----CEECCCC----CcHHHHHHH-HHHHHHHcCCEEEeCCEeeeeeec--CCceeEeecc
Confidence 77788889998762 212 1122111 011122333 334567789999999999999998 7888888872
Q ss_pred ECCeEEEEEcCeEEEEeccCCchhh
Q psy17311 281 RHGIKQTVLARREELEVISFRTTTL 305 (310)
Q Consensus 281 ~~g~~~~i~A~k~VIlaaG~~s~~l 305 (310)
+++ .+.+++.||+++|.-.|++
T Consensus 149 -~~~--~~~a~~vILAtGG~S~p~~ 170 (409)
T PF03486_consen 149 -NGG--EYEADAVILATGGKSYPKT 170 (409)
T ss_dssp -TTE--EEEESEEEE----SSSGGG
T ss_pred -Ccc--cccCCEEEEecCCCCcccc
Confidence 333 6888855555556555554
No 68
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.39 E-value=5.6e-13 Score=123.25 Aligned_cols=34 Identities=35% Similarity=0.436 Sum_probs=32.0
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
|||||||||++|+++|++|++. |++|+|||++..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~-g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKH-GKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence 7999999999999999999998 999999999764
No 69
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.38 E-value=7.7e-12 Score=118.77 Aligned_cols=33 Identities=24% Similarity=0.469 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
+||||||+|+||+++|++|++. |.+|+||||++
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~-G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKK-GFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 6999999999999999999997 99999999985
No 70
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.37 E-value=3e-12 Score=106.15 Aligned_cols=35 Identities=29% Similarity=0.483 Sum_probs=30.2
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.+|||+|||+|++|+++|++|+++ |.||+++|+..
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~-g~kV~v~E~~~ 50 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA-GLKVAVIERKL 50 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH-TS-EEEEESSS
T ss_pred ccCCEEEECCChhHHHHHHHHHHC-CCeEEEEecCC
Confidence 479999999999999999999998 99999999975
No 71
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.37 E-value=3.6e-12 Score=120.89 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=33.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCC
Q psy17311 54 HREYDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPD 91 (310)
Q Consensus 54 ~~~~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~ 91 (310)
+.++||+|||+|++|+++|++|++. +|.+|+|||++..
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 3469999999999999999999995 5899999999853
No 72
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.34 E-value=4.1e-12 Score=118.16 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=41.4
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRD 308 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~~ 308 (310)
|...+++.|++++++++|+++..+ ++++ .|+.. ++ ++.++ .||+|+|.|++.+++.
T Consensus 155 L~~~~~~~Gv~i~~~~~V~~i~~~--~~~~-~V~~~-~g---~i~ad-~vV~A~G~~s~~l~~~ 210 (393)
T PRK11728 155 MAELIQARGGEIRLGAEVTALDEH--ANGV-VVRTT-QG---EYEAR-TLINCAGLMSDRLAKM 210 (393)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEec--CCeE-EEEEC-CC---EEEeC-EEEECCCcchHHHHHH
Confidence 334456789999999999999876 5543 44432 33 57886 8999999999888753
No 73
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.33 E-value=5.6e-12 Score=116.42 Aligned_cols=35 Identities=34% Similarity=0.393 Sum_probs=33.0
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
+|||||||+|++|+++|++|++. |++|+||||+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-CCeEEEEecccC
Confidence 69999999999999999999998 999999999864
No 74
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.33 E-value=6.5e-12 Score=117.36 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=40.5
Q ss_pred cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhh
Q psy17311 247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSR 307 (310)
Q Consensus 247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~ 307 (310)
..+++.|++++.+++|++|..++ ++++.+|++. +| .+.++ .||+|+|.|++.+++
T Consensus 191 ~~a~~~Gv~~~~~~~V~~i~~~~-~~~~~~v~t~-~g---~i~a~-~vVvaagg~~~~l~~ 245 (407)
T TIGR01373 191 RGADRRGVDIIQNCEVTGFIRRD-GGRVIGVETT-RG---FIGAK-KVGVAVAGHSSVVAA 245 (407)
T ss_pred HHHHHCCCEEEeCCEEEEEEEcC-CCcEEEEEeC-Cc---eEECC-EEEECCChhhHHHHH
Confidence 45677899999999999997642 5677777654 34 57886 677777767776654
No 75
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.33 E-value=1.2e-11 Score=114.00 Aligned_cols=58 Identities=10% Similarity=0.154 Sum_probs=42.8
Q ss_pred cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhhhc
Q psy17311 247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRDV 309 (310)
Q Consensus 247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~~~ 309 (310)
..++..|+++.+|++|++|..++ +| +.-+.+ .+|++. ++|+ .||.|||..+.+|++..
T Consensus 161 e~a~~~g~~i~ln~eV~~i~~~~-dg-~~~~~~-~~g~~~-~~ak-~Vin~AGl~Ad~la~~~ 218 (429)
T COG0579 161 EEAQANGVELRLNTEVTGIEKQS-DG-VFVLNT-SNGEET-LEAK-FVINAAGLYADPLAQMA 218 (429)
T ss_pred HHHHHcCCEEEecCeeeEEEEeC-Cc-eEEEEe-cCCcEE-EEee-EEEECCchhHHHHHHHh
Confidence 44556699999999999999984 33 333333 355444 8885 99999999999998753
No 76
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.31 E-value=3.1e-11 Score=110.82 Aligned_cols=99 Identities=17% Similarity=0.191 Sum_probs=61.4
Q ss_pred ChhHHHHHHHcCCCC-CCCCCCCCccceecccc---cC-CCcc-cchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCC-
Q psy17311 200 GLHDVEAGQELGYEN-RDINGEKQTGFMVAQGT---IR-RGSR-CSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATK- 272 (310)
Q Consensus 200 g~~~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~---~~-~g~r-~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~- 272 (310)
++..++++.+.|++| .+..+....+....+.. .. .+.. .....+++..+.+++|++|+.++.+.+|+.+ ++
T Consensus 89 ~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~--~~~ 166 (518)
T COG0029 89 APEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIE--DGI 166 (518)
T ss_pred HHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhc--CCc
Confidence 447778899999999 44433221111111111 11 1211 1223344544556799999999999999999 66
Q ss_pred eEEEEEEEECC-eEEEEEcCeEEEEec-cCC
Q psy17311 273 KAYGVQFIRHG-IKQTVLARREELEVI-SFR 301 (310)
Q Consensus 273 ~v~GV~~~~~g-~~~~i~A~k~VIlaa-G~~ 301 (310)
.+.||.+.+.+ ....++|+ .||||+ |++
T Consensus 167 ~~~Gv~~~~~~~~~~~~~a~-~vVLATGG~g 196 (518)
T COG0029 167 GVAGVLVLNRNGELGTFRAK-AVVLATGGLG 196 (518)
T ss_pred eEeEEEEecCCCeEEEEecC-eEEEecCCCc
Confidence 56699998653 57789997 566666 553
No 77
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.31 E-value=2.2e-11 Score=114.70 Aligned_cols=99 Identities=12% Similarity=0.049 Sum_probs=57.1
Q ss_pred hHHHHHHHcCCCCCCC-CCCCCccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEE
Q psy17311 202 HDVEAGQELGYENRDI-NGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFI 280 (310)
Q Consensus 202 ~~~~~~~~~G~~~~~~-~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~ 280 (310)
..+++++++|+++... .+.... ..... ...+. .......|...+++.|++|+++++|++|+.++++++++||...
T Consensus 89 ~~i~wl~~~Gv~f~~~~~g~~~~--~~~~~-~~~~~-g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~ 164 (432)
T TIGR02485 89 RDLRWAFAHGVHLQPPAAGNLPY--SRRTA-FLRGG-GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTT 164 (432)
T ss_pred hHHHHHHhCCceeeecCCCCccc--cCcee-eecCC-HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEc
Confidence 6778888999887321 111000 00000 00111 1122233445567789999999999999986324789999875
Q ss_pred ECCeEEEEEcCeEEEEecc-CC-chhhhh
Q psy17311 281 RHGIKQTVLARREELEVIS-FR-TTTLSR 307 (310)
Q Consensus 281 ~~g~~~~i~A~k~VIlaaG-~~-s~~ll~ 307 (310)
.++ ..++|+ .||+|+| +. ++.+++
T Consensus 165 ~~~--~~i~ak-~VIlAtGG~~~n~~~~~ 190 (432)
T TIGR02485 165 VGT--HRITTQ-ALVLAAGGLGANRDWLR 190 (432)
T ss_pred CCc--EEEEcC-EEEEcCCCcccCHHHHH
Confidence 333 467886 6666664 54 444444
No 78
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.30 E-value=3.2e-11 Score=114.67 Aligned_cols=59 Identities=15% Similarity=0.020 Sum_probs=42.6
Q ss_pred cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEE--ECCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311 247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFI--RHGIKQTVLARREELEVISFRTTTLSRD 308 (310)
Q Consensus 247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~--~~g~~~~i~A~k~VIlaaG~~s~~ll~~ 308 (310)
..+++.|++|+++++|++|..++ ++.+ .|.+. +++...+++|+ .||+|||.|+.+|++.
T Consensus 186 ~~a~~~Gv~i~~~t~V~~i~~~~-~~~v-~v~~~~~~~g~~~~i~A~-~VV~AAG~~s~~La~~ 246 (483)
T TIGR01320 186 GYLVQNGTTIRFGHEVRNLKRQS-DGSW-TVTVKNTRTGGKRTLNTR-FVFVGAGGGALPLLQK 246 (483)
T ss_pred HHHHhCCCEEEeCCEEEEEEEcC-CCeE-EEEEeeccCCceEEEECC-EEEECCCcchHHHHHH
Confidence 44566799999999999998762 3333 23332 23444568886 8999999999998765
No 79
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.30 E-value=2.2e-11 Score=100.59 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=32.1
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
+-||||||+|++|++||++||++ |.||+++||.-
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~-g~kV~i~E~~l 63 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFERKL 63 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhC-CceEEEEEeec
Confidence 57999999999999999999998 99999999874
No 80
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.30 E-value=2.1e-12 Score=121.35 Aligned_cols=54 Identities=11% Similarity=0.196 Sum_probs=0.0
Q ss_pred hhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc
Q psy17311 243 AFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS 299 (310)
Q Consensus 243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG 299 (310)
..+...+++.|++|++++.|++++.+ ++++.||.+.+.+...+|+|+ .||-|+|
T Consensus 94 ~~l~~~l~e~gv~v~~~t~v~~v~~~--~~~i~~V~~~~~~g~~~i~A~-~~IDaTG 147 (428)
T PF12831_consen 94 AVLDEMLAEAGVEVLLGTRVVDVIRD--GGRITGVIVETKSGRKEIRAK-VFIDATG 147 (428)
T ss_dssp ---------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc--ccccccccccccccccccccc-ccccccc
Confidence 34555567789999999999999999 899999999863347789996 8888888
No 81
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.26 E-value=2.1e-11 Score=114.56 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=41.7
Q ss_pred hhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCc
Q psy17311 241 AKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRT 302 (310)
Q Consensus 241 ~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s 302 (310)
...+|.+.+++.|++++++++|++|+.+ ++++.+|.. ++. +++|+ .||.|.|.++
T Consensus 110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~--~g~v~~v~~--~g~--~i~A~-~VI~A~G~~s 164 (428)
T PRK10157 110 FDAWLMEQAEEAGAQLITGIRVDNLVQR--DGKVVGVEA--DGD--VIEAK-TVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEe--CCEEEEEEc--CCc--EEECC-EEEEEeCCCH
Confidence 3455666667789999999999999887 677777642 343 57886 8888889865
No 82
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.26 E-value=6.8e-11 Score=112.60 Aligned_cols=37 Identities=32% Similarity=0.601 Sum_probs=33.4
Q ss_pred CcccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPD 91 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~ 91 (310)
..|||||||||+.|+++|++|++. +|++|+||||...
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~ 41 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG 41 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 468999999999999999999984 5899999999864
No 83
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.25 E-value=6.3e-11 Score=112.57 Aligned_cols=55 Identities=15% Similarity=0.170 Sum_probs=42.4
Q ss_pred cccCC----CC--cEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311 247 PVRKR----KN--LHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRD 308 (310)
Q Consensus 247 ~~~~~----~g--~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~~ 308 (310)
..+++ .| ++|+++++|++|..+ ++....|.+. +| .++|+ .||+|||.||.+|++.
T Consensus 219 ~~a~~~~~~~G~~v~i~~~t~V~~I~~~--~~~~~~V~T~-~G---~i~A~-~VVvaAG~~S~~La~~ 279 (497)
T PTZ00383 219 KHARRDALVPGKKISINLNTEVLNIERS--NDSLYKIHTN-RG---EIRAR-FVVVSACGYSLLFAQK 279 (497)
T ss_pred HHHHhhhhhcCCCEEEEeCCEEEEEEec--CCCeEEEEEC-CC---EEEeC-EEEECcChhHHHHHHH
Confidence 44555 56 889999999999887 5656666543 34 58887 8999999999998875
No 84
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.24 E-value=6e-11 Score=109.21 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=32.1
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
|||||||+|++|+++|++|++. |++|+|||++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR-GLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 6999999999999999999998 999999999864
No 85
>PRK10015 oxidoreductase; Provisional
Probab=99.22 E-value=3.5e-11 Score=113.06 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=41.7
Q ss_pred hhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCc
Q psy17311 241 AKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRT 302 (310)
Q Consensus 241 ~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s 302 (310)
...+|...+++.|++++.+++|++|..+ ++++.+|.. ++ ..++|+ .||+|.|.++
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~--~~~v~~v~~--~~--~~i~A~-~VI~AdG~~s 164 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVRE--GNKVTGVQA--GD--DILEAN-VVILADGVNS 164 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEe--CCEEEEEEe--CC--eEEECC-EEEEccCcch
Confidence 3445656667789999999999999887 678877753 33 368886 8999989765
No 86
>KOG2820|consensus
Probab=99.22 E-value=6.9e-11 Score=103.38 Aligned_cols=61 Identities=13% Similarity=0.018 Sum_probs=46.9
Q ss_pred hhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311 244 FLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRD 308 (310)
Q Consensus 244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~~ 308 (310)
.+...++..|+.++.+.+|+.+.+.+..+...+|.+++ |. .+.|+ .+|+++|.|+.++|+.
T Consensus 158 ~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~-gs--~Y~ak-kiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 158 ALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD-GS--IYHAK-KIIFTVGAWINKLLPT 218 (399)
T ss_pred HHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEecc-CC--eeecc-eEEEEecHHHHhhcCc
Confidence 34456778999999999999998764456666776663 32 35664 8999999999999985
No 87
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.22 E-value=6.9e-11 Score=110.05 Aligned_cols=38 Identities=37% Similarity=0.741 Sum_probs=34.9
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
.+|||||||+|+||++||++|+++ |.+|+||||+..+.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~-G~~VlvlEk~~~~G 39 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSEPG 39 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHc-CCeEEEEecCCCCC
Confidence 479999999999999999999998 89999999997544
No 88
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.20 E-value=4.7e-10 Score=106.40 Aligned_cols=65 Identities=11% Similarity=0.022 Sum_probs=43.5
Q ss_pred hhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEE--EECCeEEEEEcCeEEEEeccCCchhhhhhc
Q psy17311 242 KAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQF--IRHGIKQTVLARREELEVISFRTTTLSRDV 309 (310)
Q Consensus 242 ~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~--~~~g~~~~i~A~k~VIlaaG~~s~~ll~~~ 309 (310)
.++...+.++.|++++++++|++|..++ ++... |.+ ..+++...++|+ .||+|||.|+.+|++.+
T Consensus 188 ~aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~w~-v~v~~t~~g~~~~i~Ad-~VV~AAGawS~~La~~~ 254 (497)
T PRK13339 188 RKLAKHLESHPNAQVKYNHEVVDLERLS-DGGWE-VTVKDRNTGEKREQVAD-YVFIGAGGGAIPLLQKS 254 (497)
T ss_pred HHHHHHHHhCCCcEEEeCCEEEEEEECC-CCCEE-EEEEecCCCceEEEEcC-EEEECCCcchHHHHHHc
Confidence 3444333345699999999999998763 23332 333 223433357886 99999999999988653
No 89
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.18 E-value=5e-10 Score=105.02 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=38.2
Q ss_pred CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCC
Q psy17311 53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEV 95 (310)
Q Consensus 53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~ 95 (310)
|+++|||||||+|.+||++|..|+++ |+|||+||+.+..++.
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~-GkkVLhlD~n~~yGG~ 42 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVN-GKKVLHMDRNPYYGGE 42 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhC-CCEEEEecCCCCcCcc
Confidence 46789999999999999999999998 9999999999877653
No 90
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.18 E-value=1.8e-10 Score=110.53 Aligned_cols=35 Identities=40% Similarity=0.569 Sum_probs=32.7
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.+|||||||||+||+.||+.||+. |.+|+|||+..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~-G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARM-GAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHc-CCcEEEEeccc
Confidence 469999999999999999999998 99999999864
No 91
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.18 E-value=6.7e-10 Score=104.00 Aligned_cols=39 Identities=33% Similarity=0.572 Sum_probs=35.2
Q ss_pred cCCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 52 QLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 52 ~~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
.++.+|||+|||||++|+++|..|++. |++|+|+||.+.
T Consensus 14 ~~~~~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~ 52 (415)
T PRK07364 14 TRSLTYDVAIVGGGIVGLTLAAALKDS-GLRIALIEAQPA 52 (415)
T ss_pred CCccccCEEEECcCHHHHHHHHHHhcC-CCEEEEEecCCc
Confidence 344579999999999999999999998 999999999874
No 92
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.15 E-value=1.3e-09 Score=103.81 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=43.4
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCC--CeEEEEEEEEC--CeEEEEEcCeEEEEecc
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPAT--KKAYGVQFIRH--GIKQTVLARREELEVIS 299 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~--~~v~GV~~~~~--g~~~~i~A~k~VIlaaG 299 (310)
|...+++.|++|+++++|++|+.+.++ ++|+||++.++ ++...+.+++.||++.|
T Consensus 232 L~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnG 290 (576)
T PRK13977 232 LIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNG 290 (576)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCC
Confidence 434567889999999999999996323 78999999863 34456777789999997
No 93
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.14 E-value=1.7e-10 Score=106.91 Aligned_cols=39 Identities=33% Similarity=0.485 Sum_probs=35.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
+.++||||||+|++|+++|++|++. |.+|+|+|+.....
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~-G~~V~vie~~~~~~ 40 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEAGG 40 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHc-CCEEEEEecCccCC
Confidence 3578999999999999999999998 89999999987543
No 94
>PLN02985 squalene monooxygenase
Probab=99.14 E-value=1.8e-09 Score=103.61 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=33.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
+..|||||||+|++|+++|+.|++. |++|+||||..
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~-G~~V~vlEr~~ 76 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKD-GRRVHVIERDL 76 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHc-CCeEEEEECcC
Confidence 3579999999999999999999998 99999999974
No 95
>PRK06185 hypothetical protein; Provisional
Probab=99.14 E-value=7e-10 Score=103.63 Aligned_cols=51 Identities=16% Similarity=0.089 Sum_probs=41.3
Q ss_pred CCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCch
Q psy17311 250 KRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTT 303 (310)
Q Consensus 250 ~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~ 303 (310)
+.+|++++.+++|+++..+ ++++.||.+..++...+++|+ .||.|.|.+|.
T Consensus 120 ~~~~v~i~~~~~v~~~~~~--~~~v~~v~~~~~~g~~~i~a~-~vI~AdG~~S~ 170 (407)
T PRK06185 120 AYPNFTLRMGAEVTGLIEE--GGRVTGVRARTPDGPGEIRAD-LVVGADGRHSR 170 (407)
T ss_pred hCCCcEEEeCCEEEEEEEe--CCEEEEEEEEcCCCcEEEEeC-EEEECCCCchH
Confidence 4469999999999999988 788888887753333578886 89999998884
No 96
>KOG0042|consensus
Probab=99.14 E-value=2.8e-11 Score=111.60 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=59.6
Q ss_pred CCccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEec
Q psy17311 221 KQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVI 298 (310)
Q Consensus 221 ~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaa 298 (310)
+..|.....-+..+..|.....++- +.+.|..+.-..+|.+|+.++ ++++.|+++++ .|+++.|+| |.||.|+
T Consensus 209 ~L~Ga~VYyDGQ~nDaRmnl~vAlT---A~r~GA~v~Nh~ev~~Llkd~-~~kv~Ga~~rD~iTG~e~~I~A-k~VVNAT 283 (680)
T KOG0042|consen 209 NLKGAMVYYDGQHNDARMNLAVALT---AARNGATVLNHVEVVSLLKDK-DGKVIGARARDHITGKEYEIRA-KVVVNAT 283 (680)
T ss_pred CceeEEEEecCCCchHHHHHHHHHH---HHhcchhhhhHHHHHHHhhCC-CCceeeeEEEEeecCcEEEEEE-EEEEeCC
Confidence 3334333333333445554444332 456899999999999999987 67999999987 799999999 4999999
Q ss_pred cCCchhhhh
Q psy17311 299 SFRTTTLSR 307 (310)
Q Consensus 299 G~~s~~ll~ 307 (310)
|..+-.|.+
T Consensus 284 GpfsDsIr~ 292 (680)
T KOG0042|consen 284 GPFSDSIRK 292 (680)
T ss_pred CCccHHHHh
Confidence 987877654
No 97
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=99.13 E-value=5.8e-10 Score=97.62 Aligned_cols=36 Identities=33% Similarity=0.530 Sum_probs=33.2
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
.++||||||+|.+|+++|.+||++ |++|++||+-+.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~a-G~~V~ildQEge 39 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADA-GKRVLILDQEGE 39 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhc-CceEEEEccccc
Confidence 479999999999999999999998 999999998653
No 98
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.12 E-value=3.9e-10 Score=111.68 Aligned_cols=34 Identities=41% Similarity=0.645 Sum_probs=32.3
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.+||||||||++|+++|++|++. |++|+|||++.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~-G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARR-GWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 58999999999999999999998 99999999985
No 99
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.08 E-value=1e-10 Score=106.71 Aligned_cols=48 Identities=25% Similarity=0.297 Sum_probs=36.2
Q ss_pred cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc-CCch
Q psy17311 249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS-FRTT 303 (310)
Q Consensus 249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG-~~s~ 303 (310)
.+.+|++|+ +.+|++|..+ +++|.||.+. +|. .++++ .||+|+| |...
T Consensus 106 ~~~~nl~i~-~~~V~~l~~e--~~~v~GV~~~-~g~--~~~a~-~vVlaTGtfl~G 154 (392)
T PF01134_consen 106 ESHPNLTII-QGEVTDLIVE--NGKVKGVVTK-DGE--EIEAD-AVVLATGTFLNG 154 (392)
T ss_dssp HTSTTEEEE-ES-EEEEEEC--TTEEEEEEET-TSE--EEEEC-EEEE-TTTGBTS
T ss_pred hcCCCeEEE-EcccceEEec--CCeEEEEEeC-CCC--EEecC-EEEEecccccCc
Confidence 355899997 5799999999 8999999875 554 67886 8999998 4443
No 100
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.04 E-value=2.5e-09 Score=99.47 Aligned_cols=36 Identities=31% Similarity=0.514 Sum_probs=33.6
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
..+||+|||||++|+++|+.|++. |.+|+|||+.+.
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE~~~~ 40 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADA-GLSVALVEGREP 40 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC-CCEEEEEeCCCC
Confidence 569999999999999999999998 999999999863
No 101
>KOG1298|consensus
Probab=99.04 E-value=4.1e-10 Score=100.13 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=40.9
Q ss_pred ccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEeccCCc
Q psy17311 248 VRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVISFRT 302 (310)
Q Consensus 248 ~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaaG~~s 302 (310)
++..+|+++..+ .|++|+.| ++.|.||++.+ .|++.+..|. --|+|-|..|
T Consensus 157 a~slpNV~~eeG-tV~sLlee--~gvvkGV~yk~k~gee~~~~Ap-LTvVCDGcfS 208 (509)
T KOG1298|consen 157 AASLPNVRLEEG-TVKSLLEE--EGVVKGVTYKNKEGEEVEAFAP-LTVVCDGCFS 208 (509)
T ss_pred HhcCCCeEEeee-eHHHHHhc--cCeEEeEEEecCCCceEEEecc-eEEEecchhH
Confidence 456789999776 58999988 88999999985 5667788886 7788888554
No 102
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.02 E-value=2.3e-09 Score=99.61 Aligned_cols=32 Identities=44% Similarity=0.712 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
|||||||||++|+++|+.|++. |.+|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~-G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA-GIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECC
Confidence 7999999999999999999997 9999999997
No 103
>PRK08244 hypothetical protein; Provisional
Probab=99.02 E-value=2.7e-09 Score=102.27 Aligned_cols=35 Identities=31% Similarity=0.560 Sum_probs=32.9
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
+|||+|||+|++|+++|+.|++. |.+|+||||.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALA-GVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 48999999999999999999997 999999999864
No 104
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.01 E-value=1.4e-09 Score=103.90 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=35.8
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
..|||||||||.+|+++|.+||++ |++|+||||....++
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~-G~~V~VlE~~~~~GG 40 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARA-GLKVTVLEKNDRVGG 40 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhC-CCEEEEEEecCCCCc
Confidence 368999999999999999999998 999999999877665
No 105
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.01 E-value=2.9e-10 Score=103.54 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=43.1
Q ss_pred hhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEeccCCch
Q psy17311 241 AKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVISFRTT 303 (310)
Q Consensus 241 ~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaaG~~s~ 303 (310)
....|...+++.+++++.+++|+.+..+ .+.+..+.... +|+..+++|+ .||.|-|.+|.
T Consensus 113 l~~~L~~~~~~~gv~i~~~~~v~~~~~d--~~~~~~~~~~~~~g~~~~i~ad-lvVgADG~~S~ 173 (356)
T PF01494_consen 113 LDRALREEAEERGVDIRFGTRVVSIEQD--DDGVTVVVRDGEDGEEETIEAD-LVVGADGAHSK 173 (356)
T ss_dssp HHHHHHHHHHHHTEEEEESEEEEEEEEE--TTEEEEEEEETCTCEEEEEEES-EEEE-SGTT-H
T ss_pred HHHhhhhhhhhhhhhheeeeeccccccc--ccccccccccccCCceeEEEEe-eeecccCcccc
Confidence 4445555566678999999999999988 56665544443 5777789997 78888898883
No 106
>PRK06126 hypothetical protein; Provisional
Probab=98.99 E-value=5.1e-09 Score=101.59 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=32.9
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.++||+|||||++|+++|+.|++. |.+|+|+||.+
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~-G~~v~viEr~~ 40 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRR-GVDSILVERKD 40 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence 468999999999999999999998 99999999875
No 107
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.97 E-value=4.9e-09 Score=93.13 Aligned_cols=34 Identities=44% Similarity=0.676 Sum_probs=32.3
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
|||+|||||++|+++|++|++. |.+|+||||...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~-g~~v~vie~~~~ 34 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLEKKSF 34 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence 7999999999999999999997 999999999864
No 108
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.97 E-value=5.1e-09 Score=98.86 Aligned_cols=35 Identities=37% Similarity=0.517 Sum_probs=32.9
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
..|||||||+|++|+++|+.|++. |++|+||||..
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~-G~~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKG-GIETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 579999999999999999999998 99999999974
No 109
>KOG2415|consensus
Probab=98.95 E-value=1.7e-09 Score=97.24 Aligned_cols=68 Identities=9% Similarity=0.056 Sum_probs=49.8
Q ss_pred cchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-----CC-------eEEEEEcCeEEEEeccC---Cc
Q psy17311 238 CSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-----HG-------IKQTVLARREELEVISF---RT 302 (310)
Q Consensus 238 ~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-----~g-------~~~~i~A~k~VIlaaG~---~s 302 (310)
......+|...+++.|++|+.+.-+.+++.+. ++.|.||.+.+ +| +-..+.|+ .-|.|-|. -|
T Consensus 182 L~~~v~wLg~kAEe~GvEiyPg~aaSevly~e-dgsVkGiaT~D~GI~k~G~pKd~FerGme~hak-~TifAEGc~G~Ls 259 (621)
T KOG2415|consen 182 LGQLVRWLGEKAEELGVEIYPGFAASEVLYDE-DGSVKGIATNDVGISKDGAPKDTFERGMEFHAK-VTIFAEGCHGSLS 259 (621)
T ss_pred HHHHHHHHHHHHHhhCceeccccchhheeEcC-CCcEeeEeeccccccCCCCccccccccceecce-eEEEeccccchhH
Confidence 34566788888899999999999999999987 89999998864 22 12367785 66666663 34
Q ss_pred hhhhh
Q psy17311 303 TTLSR 307 (310)
Q Consensus 303 ~~ll~ 307 (310)
.+|+.
T Consensus 260 kqi~k 264 (621)
T KOG2415|consen 260 KQIIK 264 (621)
T ss_pred HHHHH
Confidence 45543
No 110
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.95 E-value=6.5e-09 Score=96.72 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=32.7
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
.+||+|||+|++|+++|+.|++. |.+|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-CCCEEEEEcCCc
Confidence 48999999999999999999997 999999999863
No 111
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.95 E-value=1.5e-09 Score=101.10 Aligned_cols=31 Identities=42% Similarity=0.635 Sum_probs=29.1
Q ss_pred EEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 60 IVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 60 IVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
||||+|++|+++|++|++. |.+|+||||++.
T Consensus 1 vIIGgG~aGl~aAi~aa~~-G~~V~llEk~~~ 31 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE-GLSVLLLEKNKK 31 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc-CCcEEEEecCcc
Confidence 6999999999999999997 999999999874
No 112
>PRK07045 putative monooxygenase; Reviewed
Probab=98.95 E-value=1.1e-08 Score=95.11 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=33.7
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
.++||+|||||++|+++|+.|++. |++|+|+||.+.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E~~~~ 39 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGAR-GHSVTVVERAAR 39 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhc-CCcEEEEeCCCc
Confidence 468999999999999999999998 999999999874
No 113
>PRK06184 hypothetical protein; Provisional
Probab=98.94 E-value=7.3e-09 Score=99.49 Aligned_cols=35 Identities=29% Similarity=0.534 Sum_probs=33.0
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
++||+|||+|++|+++|+.|++. |.+|+||||.+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE~~~~ 37 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARR-GVSFRLIEKAPE 37 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCC
Confidence 68999999999999999999998 999999999864
No 114
>KOG2404|consensus
Probab=98.93 E-value=4e-09 Score=91.92 Aligned_cols=48 Identities=25% Similarity=0.372 Sum_probs=37.3
Q ss_pred CcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEeccCCc
Q psy17311 253 NLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVISFRT 302 (310)
Q Consensus 253 g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaaG~~s 302 (310)
-++|.++++|++|+.+ +++|.||++.+ +|+...+.++.+|++++||.-
T Consensus 159 ~~ki~~nskvv~il~n--~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRN--NGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred HHhhhhcceeeeeecC--CCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 4899999999999977 89999999987 566667777744444446654
No 115
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.93 E-value=8.4e-09 Score=96.14 Aligned_cols=33 Identities=39% Similarity=0.606 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
+||||||+|++|+++|+.|++. |.+|+||||..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~-G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA-GIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 6999999999999999999998 99999999864
No 116
>KOG2844|consensus
Probab=98.93 E-value=4.7e-09 Score=99.28 Aligned_cols=56 Identities=16% Similarity=0.116 Sum_probs=45.1
Q ss_pred hhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhh
Q psy17311 243 AFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTL 305 (310)
Q Consensus 243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~l 305 (310)
..|...+++.|+.|+.++.|++|..+ .++..||++.. | .|++. .||.|||+|+..+
T Consensus 191 ~ala~~A~~~GA~viE~cpV~~i~~~--~~~~~gVeT~~-G---~iet~-~~VNaaGvWAr~V 246 (856)
T KOG2844|consen 191 QALARAASALGALVIENCPVTGLHVE--TDKFGGVETPH-G---SIETE-CVVNAAGVWAREV 246 (856)
T ss_pred HHHHHHHHhcCcEEEecCCcceEEee--cCCccceeccC-c---ceecc-eEEechhHHHHHh
Confidence 34556778899999999999999998 55566998763 3 57886 8999999999554
No 117
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.91 E-value=1.5e-08 Score=94.51 Aligned_cols=36 Identities=31% Similarity=0.647 Sum_probs=32.3
Q ss_pred cccEEEECCChhHHHHHHHHhccC-CCeEEEEcCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVA-HWSILLLEAGPD 91 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~-g~~VlllE~g~~ 91 (310)
.|||+|||||++|+++|+.|++.+ |++|+||||.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 389999999999999999999972 499999999863
No 118
>PRK06847 hypothetical protein; Provisional
Probab=98.91 E-value=1.2e-08 Score=94.15 Aligned_cols=36 Identities=25% Similarity=0.448 Sum_probs=33.0
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
+..||+|||+|++|+++|+.|++. |.+|+|+|+.+.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCC
Confidence 457999999999999999999997 999999999753
No 119
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.90 E-value=2e-08 Score=97.23 Aligned_cols=36 Identities=28% Similarity=0.541 Sum_probs=33.6
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
.++||+|||+|++|+++|+.|++. |.+|+||||.+.
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~-G~~v~v~Er~~~ 44 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQY-GVRVLVLERWPT 44 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 569999999999999999999998 999999999864
No 120
>KOG2852|consensus
Probab=98.90 E-value=1e-09 Score=94.13 Aligned_cols=61 Identities=11% Similarity=0.048 Sum_probs=44.2
Q ss_pred hhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311 244 FLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVISFRTTTLSRD 308 (310)
Q Consensus 244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaaG~~s~~ll~~ 308 (310)
.+..+.++.||+++.+ +|.++..+ .+|+.+|-... .+..+...+. .||+|+|.||++|+..
T Consensus 153 i~sea~k~~~V~lv~G-kv~ev~dE--k~r~n~v~~ae~~~ti~~~d~~-~ivvsaGPWTskllp~ 214 (380)
T KOG2852|consen 153 ILSEAEKRGGVKLVFG-KVKEVSDE--KHRINSVPKAEAEDTIIKADVH-KIVVSAGPWTSKLLPF 214 (380)
T ss_pred HHHHHHhhcCeEEEEe-eeEEeecc--cccccccchhhhcCceEEeeee-EEEEecCCCchhhccc
Confidence 3444556778999998 58888755 78888886552 2334455665 8999999999999764
No 121
>PLN02697 lycopene epsilon cyclase
Probab=98.89 E-value=1.8e-08 Score=96.42 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=31.9
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
..|||||||+|++|+++|.+|++. |++|+|||+.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~-Gl~V~LIe~~ 140 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKL-GLNVGLIGPD 140 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC-CCcEEEecCc
Confidence 469999999999999999999997 9999999975
No 122
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.88 E-value=2.5e-08 Score=93.18 Aligned_cols=34 Identities=32% Similarity=0.673 Sum_probs=32.3
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
+|||+|||+|++|+++|+.|++. |.+|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGS-GLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence 58999999999999999999997 99999999986
No 123
>PRK11445 putative oxidoreductase; Provisional
Probab=98.88 E-value=4.7e-08 Score=89.61 Aligned_cols=33 Identities=27% Similarity=0.509 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
|||+|||+|++|+++|..|++. .+|+|||+.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~--~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK--MKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc--CCEEEEECCCc
Confidence 8999999999999999999995 89999999863
No 124
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.88 E-value=3.3e-08 Score=92.19 Aligned_cols=58 Identities=19% Similarity=0.058 Sum_probs=43.6
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc-CCchhhh
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS-FRTTTLS 306 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG-~~s~~ll 306 (310)
|.+..++.|++++++++|+++..+ ++++.+|. .++++...+.|+ .||+|+| +.+..|.
T Consensus 265 L~~~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~-~~~g~~~~i~AD-~VVLAtGrf~s~GL~ 323 (422)
T PRK05329 265 LRRAFERLGGRIMPGDEVLGAEFE--GGRVTAVW-TRNHGDIPLRAR-HFVLATGSFFSGGLV 323 (422)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEE-eeCCceEEEECC-EEEEeCCCcccCcee
Confidence 445556789999999999999988 67777776 445666688997 6777776 7776653
No 125
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.88 E-value=1.4e-08 Score=94.42 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=32.7
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
.+||+|||||++|+++|+.|++. |++|+|+||.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHC-CCCEEEEECCCC
Confidence 47999999999999999999997 999999999863
No 126
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.86 E-value=2.7e-08 Score=92.46 Aligned_cols=50 Identities=16% Similarity=0.084 Sum_probs=38.7
Q ss_pred ccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCch
Q psy17311 248 VRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTT 303 (310)
Q Consensus 248 ~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~ 303 (310)
+.+..+++++++++|+.+..+ ++.+. |.+..+|+ +++|+ -||.|-|.+|.
T Consensus 114 ~~~~~~v~~~~~~~v~~~~~~--~~~v~-v~l~~dG~--~~~a~-llVgADG~~S~ 163 (387)
T COG0654 114 ARALPNVTLRFGAEVEAVEQD--GDGVT-VTLSFDGE--TLDAD-LLVGADGANSA 163 (387)
T ss_pred HhhCCCcEEEcCceEEEEEEc--CCceE-EEEcCCCc--EEecC-EEEECCCCchH
Confidence 335577999999999999998 67777 66654565 78886 77777798874
No 127
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.86 E-value=2.7e-08 Score=96.73 Aligned_cols=55 Identities=11% Similarity=0.028 Sum_probs=43.3
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEec-cCC
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVI-SFR 301 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaa-G~~ 301 (310)
|.+.+.+.|++|+.++.+++|+.++ +|+|+||.+.+ +|+.+.|+|+ .||||+ |+.
T Consensus 132 L~~~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~ 189 (570)
T PRK05675 132 LYQGNLKNGTTFLNEWYAVDLVKNQ-DGAVVGVIAICIETGETVYIKSK-ATVLATGGAG 189 (570)
T ss_pred HHHHHhccCCEEEECcEEEEEEEcC-CCeEEEEEEEEcCCCcEEEEecC-eEEECCCCcc
Confidence 3344567899999999999999863 68999998854 6777889997 677776 465
No 128
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.86 E-value=6.4e-08 Score=89.48 Aligned_cols=61 Identities=7% Similarity=-0.074 Sum_probs=47.8
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCC-chhhhhhc
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFR-TTTLSRDV 309 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~-s~~ll~~~ 309 (310)
|...+++.|++++.+++|+++..+ ++++++|.+.+ ++...+.|+ .||+|+|.| |..|++++
T Consensus 269 L~~~~~~~Gg~il~g~~V~~i~~~--~~~v~~V~t~~-g~~~~l~AD-~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 269 LKHRFEQLGGVMLPGDRVLRAEFE--GNRVTRIHTRN-HRDIPLRAD-HFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHHHCCCEEEECcEEEEEEee--CCeEEEEEecC-CccceEECC-EEEEccCCCcCHHHHhhc
Confidence 334556789999999999999998 88899987643 324478898 688889988 99887653
No 129
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.85 E-value=2.2e-08 Score=93.01 Aligned_cols=35 Identities=31% Similarity=0.566 Sum_probs=32.9
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
++|||||||+|++|+++|..|++. |++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence 469999999999999999999997 99999999975
No 130
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.85 E-value=2.3e-08 Score=92.80 Aligned_cols=36 Identities=31% Similarity=0.543 Sum_probs=33.5
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
..+||||||||++|+++|+.|++. |++|+|+|+.+.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~ 39 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQS-GLRVALLAPRAP 39 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence 468999999999999999999997 999999999864
No 131
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.85 E-value=1.2e-08 Score=94.29 Aligned_cols=34 Identities=38% Similarity=0.671 Sum_probs=31.9
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE 92 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~ 92 (310)
||+|||||++|+++|+.|++. |.+|+|+||.+.+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~-G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS-GLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC-CCEEEEEeCCCcc
Confidence 899999999999999999998 9999999999753
No 132
>PRK09126 hypothetical protein; Provisional
Probab=98.84 E-value=7.1e-08 Score=89.64 Aligned_cols=35 Identities=31% Similarity=0.499 Sum_probs=33.2
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
+|||||||+|++|+++|+.|+++ |++|+|+||.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCc
Confidence 59999999999999999999998 999999999875
No 133
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.84 E-value=4.3e-08 Score=90.76 Aligned_cols=33 Identities=39% Similarity=0.604 Sum_probs=31.4
Q ss_pred cEEEECCChhHHHHHHHHhccCC-CeEEEEcCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAH-WSILLLEAGPD 91 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g-~~VlllE~g~~ 91 (310)
||+|||||++|+++|+.|++. | ++|+|+||.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL-GKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC-CCceEEEEeCCCc
Confidence 899999999999999999998 9 99999999864
No 134
>PRK07588 hypothetical protein; Provisional
Probab=98.84 E-value=5.1e-08 Score=90.66 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
||+|||||++|+++|+.|++. |.+|+|+||.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~-G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRY-GHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHC-CCceEEEeCCC
Confidence 899999999999999999998 99999999985
No 135
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.84 E-value=4.3e-08 Score=90.64 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
+||+|||||++|+++|+.|++. |++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK-GIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC-CCeEEEecCCC
Confidence 7999999999999999999997 99999999975
No 136
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.82 E-value=5.3e-08 Score=94.52 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=33.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
+.++||+|||+|++|+++|+.|++. |.+|+||||.+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viE~~~ 56 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQ-GVPVVLLDDDD 56 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence 3578999999999999999999997 99999999986
No 137
>PRK08013 oxidoreductase; Provisional
Probab=98.81 E-value=3.6e-08 Score=91.98 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=33.0
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
+|||+|||+|++|+++|+.|++. |++|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGS-GLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhC-CCEEEEEeCCCC
Confidence 58999999999999999999997 999999999874
No 138
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.81 E-value=4.7e-08 Score=94.00 Aligned_cols=33 Identities=39% Similarity=0.541 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
|||||||+|.+|+.+|..+++. |.+|+|||+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~-G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM-GAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCCEEEEeccc
Confidence 7999999999999999999997 99999999874
No 139
>PRK06834 hypothetical protein; Provisional
Probab=98.81 E-value=5.1e-08 Score=93.19 Aligned_cols=35 Identities=26% Similarity=0.540 Sum_probs=32.9
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
++||||||+|++|+++|+.|++. |.+|+||||.+.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~-G~~v~vlEr~~~ 37 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALA-GVDVAIVERRPN 37 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 58999999999999999999998 999999999863
No 140
>KOG4254|consensus
Probab=98.80 E-value=2e-08 Score=91.22 Aligned_cols=55 Identities=25% Similarity=0.266 Sum_probs=43.6
Q ss_pred hhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCch
Q psy17311 243 AFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTT 303 (310)
Q Consensus 243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~ 303 (310)
..+.+.+++.|.+|.+++.|.+|+.| +|++.||.+. +|+ ++++ |.||--|+.|.+
T Consensus 268 ~aia~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~-dG~--ev~s-k~VvSNAt~~~T 322 (561)
T KOG4254|consen 268 FAIAEGAKRAGAEIFTKATVQSILLD--SGKAVGVRLA-DGT--EVRS-KIVVSNATPWDT 322 (561)
T ss_pred HHHHHHHHhccceeeehhhhhheecc--CCeEEEEEec-CCc--EEEe-eeeecCCchHHH
Confidence 34557789999999999999999999 8999999997 454 4666 577766676543
No 141
>PRK07190 hypothetical protein; Provisional
Probab=98.79 E-value=2.9e-08 Score=94.82 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=33.3
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
..+||||||||++|+++|+.|++. |.+|+||||.+.
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~-Gi~V~llEr~~~ 39 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLC-GLNTVIVDKSDG 39 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHc-CCCEEEEeCCCc
Confidence 358999999999999999999997 999999999864
No 142
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.78 E-value=8.3e-08 Score=89.70 Aligned_cols=34 Identities=32% Similarity=0.561 Sum_probs=32.0
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
..|||+|||+|++|+++|+.|++. |++|+|||+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE~~ 36 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKES-DLRIAVIEGQ 36 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhC-CCEEEEEcCC
Confidence 368999999999999999999997 9999999996
No 143
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.77 E-value=1.1e-08 Score=86.04 Aligned_cols=58 Identities=16% Similarity=0.252 Sum_probs=35.3
Q ss_pred hhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc-CCchhhh
Q psy17311 242 KAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS-FRTTTLS 306 (310)
Q Consensus 242 ~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG-~~s~~ll 306 (310)
..|+...+++.+++++++++|+++..+ +++ --|++. ++ .+++|+ .||+|+| +..|++.
T Consensus 85 ~~yl~~~~~~~~l~i~~~~~V~~v~~~--~~~-w~v~~~-~~--~~~~a~-~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 85 LDYLQEYAERFGLEIRFNTRVESVRRD--GDG-WTVTTR-DG--RTIRAD-RVVLATGHYSHPRIP 143 (203)
T ss_dssp HHHHHHHHHHTTGGEETS--EEEEEEE--TTT-EEEEET-TS---EEEEE-EEEE---SSCSB---
T ss_pred HHHHHHHHhhcCcccccCCEEEEEEEe--ccE-EEEEEE-ec--ceeeee-eEEEeeeccCCCCcc
Confidence 357777778889999999999999998 544 334443 44 467786 8888888 4566653
No 144
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.77 E-value=8.8e-08 Score=90.71 Aligned_cols=38 Identities=26% Similarity=0.404 Sum_probs=34.4
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
...+|+|||||++|+++|.+|.+. |.+|+|+|+++..+
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~-G~~v~vfE~~~~vG 46 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRRE-GHTVVVFEREKQVG 46 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhc-CCeEEEEecCCCCc
Confidence 468999999999999999999998 99999999987544
No 145
>PLN02463 lycopene beta cyclase
Probab=98.77 E-value=6.8e-08 Score=91.01 Aligned_cols=35 Identities=40% Similarity=0.717 Sum_probs=32.7
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
..|||||||+|++|+++|..|++. |.+|+|||+.+
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~-Gl~V~liE~~~ 61 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEA-GLSVCCIDPSP 61 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHC-CCeEEEeccCc
Confidence 469999999999999999999997 99999999864
No 146
>PRK07538 hypothetical protein; Provisional
Probab=98.76 E-value=5.6e-08 Score=91.10 Aligned_cols=33 Identities=27% Similarity=0.581 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
||+|||||++|+++|+.|++. |.+|+|+|+.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQR-GIEVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCCc
Confidence 899999999999999999998 999999999763
No 147
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.75 E-value=8.2e-08 Score=89.14 Aligned_cols=36 Identities=36% Similarity=0.522 Sum_probs=33.2
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
..|||||||+|++|+++|+.|++. |.+|+|||+.+.
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE~~~~ 41 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARA-GASVALVAPEPP 41 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC-CCeEEEEeCCCC
Confidence 468999999999999999999997 999999999753
No 148
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.74 E-value=5.7e-08 Score=89.37 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=46.0
Q ss_pred hhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEE--ECCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311 242 KAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFI--RHGIKQTVLARREELEVISFRTTTLSRD 308 (310)
Q Consensus 242 ~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~--~~g~~~~i~A~k~VIlaaG~~s~~ll~~ 308 (310)
+.++....++.|+++.++++|++|...+ ++ ---|.+. .++....++|+ .|++.||-++=.||.+
T Consensus 185 r~l~~~l~~~~~~~~~~~~eV~~i~r~~-dg-~W~v~~~~~~~~~~~~v~a~-FVfvGAGG~aL~LLqk 250 (488)
T PF06039_consen 185 RQLVEYLQKQKGFELHLNHEVTDIKRNG-DG-RWEVKVKDLKTGEKREVRAK-FVFVGAGGGALPLLQK 250 (488)
T ss_pred HHHHHHHHhCCCcEEEecCEeCeeEECC-CC-CEEEEEEecCCCCeEEEECC-EEEECCchHhHHHHHH
Confidence 3344444456799999999999999984 33 2334443 35677899996 9999998778777654
No 149
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.74 E-value=6.1e-08 Score=90.21 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=33.0
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
...||+|||||++|+++|..|++. |.+|+|+||.+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC-CCcEEEEeeCcc
Confidence 357999999999999999999997 999999999863
No 150
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.73 E-value=1.1e-07 Score=88.33 Aligned_cols=34 Identities=35% Similarity=0.648 Sum_probs=32.1
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
+|||+|||||++|+++|+.|++. |++|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQ-GRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEcCCC
Confidence 58999999999999999999997 99999999875
No 151
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.72 E-value=1.1e-07 Score=89.16 Aligned_cols=35 Identities=43% Similarity=0.738 Sum_probs=33.1
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.+||+||||+|++|.++|.+|++. |.||+|+|+.+
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~~ 37 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGE 37 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCCEEEEeecC
Confidence 579999999999999999999998 88899999985
No 152
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.72 E-value=7.1e-08 Score=82.45 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=31.3
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
+++|||+|++|+++|+.|++. |.+|+|+|||.-
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-G~~vtV~eKg~G 35 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-GREVTVFEKGRG 35 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-CcEEEEEEcCCC
Confidence 799999999999999999998 999999999963
No 153
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.71 E-value=7.9e-08 Score=89.35 Aligned_cols=35 Identities=40% Similarity=0.601 Sum_probs=31.6
Q ss_pred CcccEEEECCChhHHHHHHHHhcc--CCCeEEEEcCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEV--AHWSILLLEAG 89 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~--~g~~VlllE~g 89 (310)
..+||+|||+|++|+++|+.|++. .|++|+|+||.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 368999999999999999999884 28999999995
No 154
>PRK06753 hypothetical protein; Provisional
Probab=98.70 E-value=1.6e-07 Score=86.73 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=31.4
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
||+|||||++|+++|+.|++. |++|+|+||.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ-GHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCc
Confidence 799999999999999999998 999999999874
No 155
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.69 E-value=9e-08 Score=91.26 Aligned_cols=35 Identities=40% Similarity=0.749 Sum_probs=32.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
..+||+||||||++|+.+|.+|++. |++|+|+|++
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~ 36 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQL-GLKTALVEKG 36 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCeEEEEEcc
Confidence 3579999999999999999999998 9999999986
No 156
>PRK07236 hypothetical protein; Provisional
Probab=98.68 E-value=6.5e-07 Score=83.13 Aligned_cols=34 Identities=29% Similarity=0.503 Sum_probs=32.3
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
..||||||||++|+++|+.|++. |.+|+|+||.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence 58999999999999999999998 99999999975
No 157
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=4.6e-08 Score=91.16 Aligned_cols=35 Identities=43% Similarity=0.592 Sum_probs=31.5
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.+|||||||+|.||+-||..+|+. |.+++||--..
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARm-G~ktlLlT~~~ 37 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARM-GAKTLLLTLNL 37 (621)
T ss_pred CCCceEEECCCccchHHHHhhhcc-CCeEEEEEcCC
Confidence 469999999999999999999998 99999987543
No 158
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.64 E-value=1.1e-07 Score=90.57 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=33.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
+.+||+||||+|++|+.+|.+|++. |++|+|+|+.+
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~~ 37 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADL-GLETVCVERYS 37 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 3469999999999999999999998 99999999864
No 159
>PTZ00367 squalene epoxidase; Provisional
Probab=98.64 E-value=2.3e-07 Score=89.80 Aligned_cols=35 Identities=40% Similarity=0.663 Sum_probs=32.8
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.+|||||||||++|+++|+.|++. |++|+|+||.+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~-G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhc-CCEEEEEcccc
Confidence 469999999999999999999997 99999999975
No 160
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=4e-07 Score=81.38 Aligned_cols=35 Identities=40% Similarity=0.696 Sum_probs=30.8
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCe-EEEEcCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWS-ILLLEAGP 90 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~-VlllE~g~ 90 (310)
..|||||||||+||++||.++++. +.+ ++++|++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~-~l~~~li~~~~~ 37 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARA-GLKVVLILEGGE 37 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHc-CCCcEEEEecCC
Confidence 469999999999999999999998 888 77777653
No 161
>PRK06996 hypothetical protein; Provisional
Probab=98.60 E-value=3.8e-07 Score=85.08 Aligned_cols=37 Identities=27% Similarity=0.527 Sum_probs=32.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhccC---CCeEEEEcCCC
Q psy17311 54 HREYDFIVIGGGSAGAVVASRLSEVA---HWSILLLEAGP 90 (310)
Q Consensus 54 ~~~~DvIVVGaG~aG~~aA~~Lae~~---g~~VlllE~g~ 90 (310)
+++|||+|||+|++|+++|+.|++.+ |++|+|+|+.+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 35799999999999999999999972 35799999975
No 162
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.60 E-value=5.9e-07 Score=87.44 Aligned_cols=55 Identities=11% Similarity=0.069 Sum_probs=43.9
Q ss_pred hhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEec-cCC
Q psy17311 244 FLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVI-SFR 301 (310)
Q Consensus 244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaa-G~~ 301 (310)
.|.+.+++.|++|++++.|++|+.+ +|+|+||...+ +|+...|+|+ .||||+ |+.
T Consensus 124 ~L~~~~~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~Ak-aVILATGG~~ 181 (565)
T TIGR01816 124 TLYQQNLKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRAK-AVVLATGGYG 181 (565)
T ss_pred HHHHHHHhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEeC-eEEECCCCcc
Confidence 3445456789999999999999997 89999998854 6777889996 677777 464
No 163
>PRK05868 hypothetical protein; Validated
Probab=98.60 E-value=6.6e-07 Score=82.71 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=31.2
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
||+|||+|++|+++|+.|++. |++|+|+|+.+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~-G~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRH-GYSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCC
Confidence 899999999999999999997 999999999864
No 164
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.60 E-value=3.2e-07 Score=85.17 Aligned_cols=32 Identities=41% Similarity=0.677 Sum_probs=30.6
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
||||||||++|+++|++|++. |.+|+|||+.+
T Consensus 1 DviIiGaG~AGl~~A~~la~~-g~~v~liE~~~ 32 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP-GLRVQLIEPHP 32 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEccCC
Confidence 899999999999999999997 99999999975
No 165
>KOG2665|consensus
Probab=98.60 E-value=9.4e-08 Score=83.30 Aligned_cols=38 Identities=32% Similarity=0.541 Sum_probs=33.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhc-cCCCeEEEEcCCCC
Q psy17311 54 HREYDFIVIGGGSAGAVVASRLSE-VAHWSILLLEAGPD 91 (310)
Q Consensus 54 ~~~~DvIVVGaG~aG~~aA~~Lae-~~g~~VlllE~g~~ 91 (310)
.+.||.||||+|+.|++.|.+|.- +|+.+|+||||...
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~ 84 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKS 84 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhh
Confidence 357999999999999999999975 58999999999753
No 166
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.60 E-value=1.3e-07 Score=89.39 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=41.3
Q ss_pred hhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCch
Q psy17311 240 TAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTT 303 (310)
Q Consensus 240 ~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~ 303 (310)
....+|.+.+.+.|++++.++ |+++..++ ++.+.+|++. +|+ +++|+ -||=|+|+.+.
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~-~g~i~~v~~~-~g~--~i~ad-~~IDASG~~s~ 212 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDE-DGRITAVRLD-DGR--TIEAD-FFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEET-TSE--EEEES-EEEE-SGGG-C
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcC-CCCEEEEEEC-CCC--EEEEe-EEEECCCccch
Confidence 345667777777899999884 88888876 8889998876 343 68897 89999998664
No 167
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.58 E-value=6.1e-07 Score=84.74 Aligned_cols=33 Identities=33% Similarity=0.700 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHhc----cCCCeEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSE----VAHWSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae----~~g~~VlllE~g~ 90 (310)
|||||||+|++|+++|+.|++ . |.+|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~-G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTK-DLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccC-CCeEEEEeCCC
Confidence 799999999999999999998 6 99999999964
No 168
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.57 E-value=2.6e-07 Score=88.83 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
.|+|||||++|+++|..|.|. |.+|+++||.+..++
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~-g~~~~~fE~~~~iGG 38 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEE-GLEVTCFEKSDDIGG 38 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-T-EEEEEESSSSSSG
T ss_pred EEEEECccHHHHHHHHHHHHC-CCCCeEEecCCCCCc
Confidence 489999999999999999997 999999999986554
No 169
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.54 E-value=9.8e-08 Score=65.68 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=29.4
Q ss_pred EECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 61 VIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 61 VVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
|||+|++|+++|++|+++ |++|+|+|+.+...+
T Consensus 1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-TSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHC-CCcEEEEecCcccCc
Confidence 899999999999999998 999999999986553
No 170
>KOG2853|consensus
Probab=98.53 E-value=2.1e-06 Score=75.81 Aligned_cols=41 Identities=24% Similarity=0.410 Sum_probs=34.6
Q ss_pred cCCCcccEEEECCChhHHHHHHHHhc---cCCCeEEEEcCCCCC
Q psy17311 52 QLHREYDFIVIGGGSAGAVVASRLSE---VAHWSILLLEAGPDE 92 (310)
Q Consensus 52 ~~~~~~DvIVVGaG~aG~~aA~~Lae---~~g~~VlllE~g~~~ 92 (310)
..+..+||+|||+|..|+++|+-|-| ..|.+|+|+|+....
T Consensus 82 ~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 82 VFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred ccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 34568999999999999999998866 347999999998743
No 171
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.52 E-value=7.5e-07 Score=81.53 Aligned_cols=51 Identities=12% Similarity=0.082 Sum_probs=40.1
Q ss_pred cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCch
Q psy17311 247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTT 303 (310)
Q Consensus 247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~ 303 (310)
+..+..|++++++++|++|+++ ++.+.+|...++. .+.++ .||+|-|-.+.
T Consensus 181 ~~l~~~G~ei~f~t~VeDi~~~--~~~~~~v~~~~g~---~i~~~-~vvlA~Grsg~ 231 (486)
T COG2509 181 EYLESLGGEIRFNTEVEDIEIE--DNEVLGVKLTKGE---EIEAD-YVVLAPGRSGR 231 (486)
T ss_pred HHHHhcCcEEEeeeEEEEEEec--CCceEEEEccCCc---EEecC-EEEEccCcchH
Confidence 4457789999999999999999 6778888876443 67887 88888884443
No 172
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.49 E-value=1.2e-06 Score=86.22 Aligned_cols=39 Identities=31% Similarity=0.541 Sum_probs=34.6
Q ss_pred CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
|++++||+|||||++|+++|+.|++..|.+|+|||+.+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 566899999999999999999999922999999999764
No 173
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.49 E-value=9.4e-07 Score=82.48 Aligned_cols=33 Identities=24% Similarity=0.533 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
+|+|||||++|+++|+.|++. |++|+|+||.+.
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~-G~~V~i~E~~~~ 36 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAAR-GWAVTIIEKAQE 36 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCc
Confidence 799999999999999999997 999999999753
No 174
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.49 E-value=7.4e-07 Score=85.97 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=50.1
Q ss_pred cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311 247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFRTTTLSRD 308 (310)
Q Consensus 247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s~~ll~~ 308 (310)
..+.+.|++|+++++|++|..+ ++++.||++.+ +|+...|+|+ .||+|+|.|+.+|++.
T Consensus 136 ~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a~-~VVnAaG~wa~~l~~~ 196 (516)
T TIGR03377 136 LDAQEHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEAQ-VVINAAGIWAGRIAEY 196 (516)
T ss_pred HHHHHcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcC-EEEECCCcchHHHHHh
Confidence 4456789999999999999988 88999999864 4656789996 8999999999998763
No 175
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.48 E-value=1.4e-06 Score=84.07 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=42.6
Q ss_pred CCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccC-Cchhhhh
Q psy17311 250 KRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISF-RTTTLSR 307 (310)
Q Consensus 250 ~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~-~s~~ll~ 307 (310)
+..|+++++++.|+++..+ ++++.+|++.+ +++..++.++ .|+++.|+ -.+.+++
T Consensus 398 ~~~gI~i~~~~~v~~i~~~--~g~v~~v~~~~~~~g~~~~i~~D-~v~~~~G~~p~~~~l~ 455 (517)
T PRK15317 398 SLPNVTIITNAQTTEVTGD--GDKVTGLTYKDRTTGEEHHLELE-GVFVQIGLVPNTEWLK 455 (517)
T ss_pred cCCCcEEEECcEEEEEEcC--CCcEEEEEEEECCCCcEEEEEcC-EEEEeECCccCchHHh
Confidence 3479999999999999866 68899998874 4666689998 88999994 3344544
No 176
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.47 E-value=1.6e-06 Score=81.77 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=34.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhccCCCe-EEEEcCCCCCC
Q psy17311 54 HREYDFIVIGGGSAGAVVASRLSEVAHWS-ILLLEAGPDEN 93 (310)
Q Consensus 54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~-VlllE~g~~~~ 93 (310)
.+.+||+|||||.+|+++|++|.+. |.. ++++||.+...
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~-g~~~~~i~Ek~~~~G 45 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQA-GVPDFVIFEKRDDVG 45 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHc-CCCcEEEEEccCCcC
Confidence 3579999999999999999999998 887 99999997433
No 177
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.44 E-value=1.3e-06 Score=80.79 Aligned_cols=33 Identities=39% Similarity=0.730 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHH--hccCCCeEEEEcCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRL--SEVAHWSILLLEAGPD 91 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~L--ae~~g~~VlllE~g~~ 91 (310)
||||||+|+||+++|++| ++. |.+|+|||+.+.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~ 35 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPK 35 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCcc
Confidence 899999999999999999 775 999999998764
No 178
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.39 E-value=2.6e-06 Score=74.96 Aligned_cols=58 Identities=12% Similarity=-0.098 Sum_probs=44.6
Q ss_pred cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhh
Q psy17311 247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSR 307 (310)
Q Consensus 247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~ 307 (310)
...++.|+-++.+-+|.+..+. +++|+.|.++ +.....++|+..|+++++|.|.-|..
T Consensus 266 ~~f~~~Gg~~m~Gd~V~~a~~~--~~~v~~i~tr-n~~diP~~a~~~VLAsGsffskGLva 323 (421)
T COG3075 266 RQFEQLGGLWMPGDEVKKATCK--GGRVTEIYTR-NHADIPLRADFYVLASGSFFSKGLVA 323 (421)
T ss_pred HHHHHcCceEecCCceeeeeee--CCeEEEEEec-ccccCCCChhHeeeeccccccccchh
Confidence 3456789999999999999999 8999999877 55567899984444444587866643
No 179
>PRK06116 glutathione reductase; Validated
Probab=98.36 E-value=3.7e-07 Score=86.50 Aligned_cols=35 Identities=43% Similarity=0.685 Sum_probs=32.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
+.+||+||||+|++|+.+|.+|++. |++|+|+|++
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~-G~~V~liE~~ 36 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMY-GAKVALIEAK 36 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence 3579999999999999999999998 9999999996
No 180
>PTZ00058 glutathione reductase; Provisional
Probab=98.35 E-value=1e-06 Score=85.36 Aligned_cols=35 Identities=40% Similarity=0.581 Sum_probs=32.8
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.+||+||||+|++|..+|.+|++. |++|+|||++.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~-G~~ValIEk~~ 81 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARN-KAKVALVEKDY 81 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHc-CCeEEEEeccc
Confidence 579999999999999999999998 99999999863
No 181
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.34 E-value=4.6e-07 Score=86.91 Aligned_cols=53 Identities=28% Similarity=0.330 Sum_probs=42.3
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCch
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTT 303 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~ 303 (310)
|.+.+++.|++|+++++|++|..+ ++++.||++. +|+ ++.|+ .||+++|.+..
T Consensus 235 L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~-~g~--~~~ad-~vV~a~~~~~~ 287 (493)
T TIGR02730 235 LVKGLEKHGGQIRYRARVTKIILE--NGKAVGVKLA-DGE--KIYAK-RIVSNATRWDT 287 (493)
T ss_pred HHHHHHHCCCEEEeCCeeeEEEec--CCcEEEEEeC-CCC--EEEcC-EEEECCChHHH
Confidence 445667889999999999999998 7899999876 343 46786 78998887643
No 182
>PRK06370 mercuric reductase; Validated
Probab=98.32 E-value=6.2e-07 Score=85.34 Aligned_cols=37 Identities=38% Similarity=0.599 Sum_probs=33.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
|..+||+||||+|++|+++|.+|++. |++|+|+|++.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~ 38 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGL-GMKVALIERGL 38 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence 34579999999999999999999998 99999999964
No 183
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.31 E-value=5.9e-07 Score=85.08 Aligned_cols=33 Identities=30% Similarity=0.468 Sum_probs=31.7
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
+||+||||+|++|+++|.+|++. |++|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH-GAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCcEEEEecC
Confidence 59999999999999999999998 9999999985
No 184
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.28 E-value=7.2e-07 Score=84.36 Aligned_cols=36 Identities=31% Similarity=0.631 Sum_probs=33.2
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
++|||||||||++|+.+|.+|++. |++|+|+|+++.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~-g~~V~lie~~~~ 37 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKA-GWRVALIEQSNA 37 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHC-CCeEEEEcCCCC
Confidence 369999999999999999999998 999999999753
No 185
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.28 E-value=7.3e-07 Score=84.51 Aligned_cols=34 Identities=47% Similarity=0.710 Sum_probs=32.2
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
+||+||||+|++|+.+|.+|++. |.+|+|+|++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~~ 35 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEH-GAKALLVEAKK 35 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-CCcEEEecccc
Confidence 69999999999999999999998 99999999964
No 186
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.25 E-value=1e-06 Score=83.84 Aligned_cols=33 Identities=30% Similarity=0.579 Sum_probs=31.4
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
+||+||||+|++|+++|.+|++. |++|+|+|+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~-G~~V~liE~~ 35 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQL-GLKVACVEGR 35 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence 59999999999999999999998 9999999974
No 187
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.22 E-value=1.2e-06 Score=82.82 Aligned_cols=34 Identities=38% Similarity=0.610 Sum_probs=32.5
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
+||+||||||+||+++|.+|++. |.+|+|+||++
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~-g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASA-GKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecCC
Confidence 69999999999999999999997 99999999975
No 188
>KOG2960|consensus
Probab=98.22 E-value=5e-07 Score=74.62 Aligned_cols=35 Identities=26% Similarity=0.485 Sum_probs=31.7
Q ss_pred cccEEEECCChhHHHHHHHHh-ccCCCeEEEEcCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLS-EVAHWSILLLEAGP 90 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~La-e~~g~~VlllE~g~ 90 (310)
+.||||||+|.+|+++||..+ ++|..+|.+||..-
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SV 111 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSV 111 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeee
Confidence 579999999999999999999 56889999999763
No 189
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.22 E-value=1.2e-06 Score=83.34 Aligned_cols=35 Identities=29% Similarity=0.497 Sum_probs=32.6
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.+||+||||+|++|+++|.+|++. |++|+|+|++.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~-G~~V~lie~~~ 37 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQL-GLKTAVVEKKY 37 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecCC
Confidence 369999999999999999999998 99999999863
No 190
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.22 E-value=1.3e-06 Score=82.98 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=33.6
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE 92 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~ 92 (310)
.+||+||||+|++|+.+|.+|++. |++|+|+|+++..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~-G~~v~liE~~~~~ 40 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKL-GKRVAVIERYRNV 40 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCEEEEEeccccc
Confidence 469999999999999999999998 9999999997543
No 191
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.20 E-value=1.4e-06 Score=84.78 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=33.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
...|||||||||+||+++|.+|++. |++|+|+|++..
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~-g~~V~liE~~~~ 38 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRA-KLDTLIIEKDDF 38 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCC
Confidence 3469999999999999999999997 999999999753
No 192
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.20 E-value=3e-05 Score=72.71 Aligned_cols=33 Identities=36% Similarity=0.610 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHhccCC-CeEEEEcCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAH-WSILLLEAGPD 91 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g-~~VlllE~g~~ 91 (310)
.|+|||+|++|+++|+.|+++ | .+|+|+||.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~-g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH-SHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCCCEEEEecCCc
Confidence 589999999999999999998 6 69999999753
No 193
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.20 E-value=1.4e-06 Score=82.95 Aligned_cols=35 Identities=37% Similarity=0.590 Sum_probs=33.0
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.+||+||||+|++|+.+|.+|++. |++|+|+|++.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~-G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHC-CCcEEEEeccc
Confidence 469999999999999999999998 99999999975
No 194
>PRK07208 hypothetical protein; Provisional
Probab=98.20 E-value=1.7e-06 Score=82.68 Aligned_cols=40 Identities=28% Similarity=0.444 Sum_probs=35.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
.+..||||||||++|+++|++|+++ |.+|+|+|+.+..++
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~-g~~v~v~E~~~~~GG 41 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKR-GYPVTVLEADPVVGG 41 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCc
Confidence 4568999999999999999999998 999999999876554
No 195
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.19 E-value=1.8e-06 Score=79.35 Aligned_cols=37 Identities=27% Similarity=0.587 Sum_probs=33.4
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
+|++|||||.+|+++|.+|++. |.+|+|||+.+..++
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~-G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL-NKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCCCC
Confidence 7999999999999999999997 999999999765443
No 196
>KOG1335|consensus
Probab=98.19 E-value=2e-05 Score=70.81 Aligned_cols=36 Identities=31% Similarity=0.542 Sum_probs=33.2
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
.+||++|||+|++|-++|+++++. |.+...+|+...
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQl-GlkTacvEkr~~ 73 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQL-GLKTACVEKRGT 73 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHh-cceeEEEeccCc
Confidence 479999999999999999999998 999999999554
No 197
>KOG1399|consensus
Probab=98.18 E-value=1e-05 Score=75.92 Aligned_cols=38 Identities=29% Similarity=0.388 Sum_probs=34.3
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
.-+++|||||++||++|..|.+. |.+|+++||.+..++
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~-g~~v~vfEr~~~iGG 43 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE-GHEVVVFERTDDIGG 43 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC-CCCceEEEecCCccc
Confidence 45999999999999999999997 999999999986543
No 198
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.18 E-value=1.8e-06 Score=82.88 Aligned_cols=37 Identities=30% Similarity=0.444 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
-||||||||++|+++|..|+++ |++|+|+||.+.+++
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~-G~~v~vlE~~~~~GG 38 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR-GYRVTLLEQHAQPGG 38 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCC
Confidence 5999999999999999999998 999999999877654
No 199
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.18 E-value=2.3e-05 Score=71.43 Aligned_cols=35 Identities=37% Similarity=0.466 Sum_probs=27.0
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.||+|+||.|++++++|..|.+.+..+++.||+.+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~ 36 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRP 36 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-S
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCC
Confidence 58999999999999999999998569999999875
No 200
>KOG2311|consensus
Probab=98.18 E-value=5.9e-06 Score=75.97 Aligned_cols=35 Identities=37% Similarity=0.577 Sum_probs=31.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
...|||||||+|.|||-+|..+|+- |.+.+||-..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~-Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARL-GARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhc-CCceEEeecc
Confidence 4679999999999999999999997 9999988754
No 201
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.17 E-value=8.9e-06 Score=73.74 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=44.9
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhh
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSR 307 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~ 307 (310)
+...+++.|++++.+++|++|..+ ++++.+|... +| .++|+ .||+|+|.|+++|..
T Consensus 143 l~~~~~~~g~~~~~~~~v~~i~~~--~~~~~~v~~~-~g---~~~a~-~vV~a~G~~~~~l~~ 198 (337)
T TIGR02352 143 LEKALEKLGVEIIEHTEVQHIEIR--GEKVTAIVTP-SG---DVQAD-QVVLAAGAWAGELLP 198 (337)
T ss_pred HHHHHHHcCCEEEccceEEEEEee--CCEEEEEEcC-CC---EEECC-EEEEcCChhhhhccc
Confidence 435567789999999999999987 7888888653 33 57886 899999999988753
No 202
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.16 E-value=2e-06 Score=81.77 Aligned_cols=33 Identities=39% Similarity=0.692 Sum_probs=31.2
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
+|||||||||++|+.+|.+|++. |++|+|||+.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~-G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQL-GLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence 49999999999999999999997 9999999993
No 203
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.16 E-value=1.8e-06 Score=82.45 Aligned_cols=33 Identities=33% Similarity=0.639 Sum_probs=31.7
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEA 88 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~ 88 (310)
.+||+||||+|++|+++|.+|++. |++|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~-g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQL-GLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhC-CCeEEEEec
Confidence 479999999999999999999997 999999998
No 204
>KOG0029|consensus
Probab=98.15 E-value=2.2e-06 Score=81.69 Aligned_cols=39 Identities=33% Similarity=0.516 Sum_probs=35.6
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
...+|||||||++|++||..|.+. |.+|+|||+-+..++
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEARDRVGG 52 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHc-CCceEEEeccCCcCc
Confidence 468999999999999999999998 999999999877654
No 205
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.13 E-value=3e-06 Score=74.34 Aligned_cols=37 Identities=24% Similarity=0.553 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
||++|||||.+|+++|..|++. |++||+|||-+..++
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~-gk~VLIvekR~HIGG 38 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNHIGG 38 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHc-CCEEEEEeccccCCC
Confidence 8999999999999999999998 999999999876554
No 206
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.12 E-value=2.3e-06 Score=81.39 Aligned_cols=33 Identities=36% Similarity=0.704 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
||+||||||++|+++|.+|++. |++|+|+|+++
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~-g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL-GASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence 7999999999999999999998 99999999965
No 207
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.11 E-value=2.6e-06 Score=75.89 Aligned_cols=33 Identities=33% Similarity=0.552 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
|||||||||++|+++|..|++. |.+|+|+|+++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARA-NLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCCEEEEeccC
Confidence 7999999999999999999997 99999999876
No 208
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.11 E-value=2.7e-06 Score=81.69 Aligned_cols=34 Identities=32% Similarity=0.486 Sum_probs=31.7
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
..||+||||+|++|+.+|.+|++. |++|+|||++
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~-G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAH-GKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhC-CCeEEEEecc
Confidence 369999999999999999999998 9999999973
No 209
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.11 E-value=2.4e-06 Score=82.09 Aligned_cols=50 Identities=14% Similarity=0.166 Sum_probs=39.0
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccC
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISF 300 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~ 300 (310)
|.+.+++.|++|++++.|++|..+ +++++||++. +|+ .+.|+ .||+|+++
T Consensus 225 l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~-~g~--~~~ad-~VI~a~~~ 274 (502)
T TIGR02734 225 MAKLAEDLGGELRLNAEVIRIETE--GGRATAVHLA-DGE--RLDAD-AVVSNADL 274 (502)
T ss_pred HHHHHHHCCCEEEECCeEEEEEee--CCEEEEEEEC-CCC--EEECC-EEEECCcH
Confidence 434556789999999999999988 7888899775 343 46787 68888874
No 210
>PLN02546 glutathione reductase
Probab=98.10 E-value=2.8e-06 Score=82.33 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=31.3
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEA 88 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~ 88 (310)
.+||+||||+|++|..+|.+|++. |++|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNF-GASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence 369999999999999999999998 999999996
No 211
>PRK14694 putative mercuric reductase; Provisional
Probab=98.09 E-value=3e-06 Score=80.72 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=33.0
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
..||+||||+|++|+++|.+|++. |++|+|+|++.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-g~~v~lie~~~ 39 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-GARVTLIERGT 39 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEEccc
Confidence 479999999999999999999998 99999999974
No 212
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.09 E-value=3.1e-06 Score=80.45 Aligned_cols=34 Identities=44% Similarity=0.721 Sum_probs=31.9
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
.+||+||||||++|+++|.+|++. |++|+|||++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKL-GKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 369999999999999999999997 9999999994
No 213
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.08 E-value=5.6e-05 Score=69.76 Aligned_cols=58 Identities=14% Similarity=0.224 Sum_probs=45.1
Q ss_pred hhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhhhc
Q psy17311 242 KAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRDV 309 (310)
Q Consensus 242 ~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~~~ 309 (310)
..+..+..++.|++|++++.|+++..+ +|.+.++++ +|.++ .||=|||...+.+++++
T Consensus 212 ~~~a~~~L~~~GV~v~l~~~Vt~v~~~-------~v~~~~g~~--~I~~~-tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 212 SKYAERALEKLGVEVLLGTPVTEVTPD-------GVTLKDGEE--EIPAD-TVVWAAGVRASPLLKDL 269 (405)
T ss_pred HHHHHHHHHHCCCEEEcCCceEEECCC-------cEEEccCCe--eEecC-EEEEcCCCcCChhhhhc
Confidence 345555678899999999999999655 566654443 68886 89999999888888763
No 214
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.08 E-value=3.7e-06 Score=82.75 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=31.6
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
+||+||||+|++|..+|.++++. |+||+|+|++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~-G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMER-GLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCC
Confidence 79999999999999999999998 9999999975
No 215
>PRK09897 hypothetical protein; Provisional
Probab=98.07 E-value=5.2e-05 Score=72.98 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPDE 92 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~~ 92 (310)
.+|+|||+|++|+++|.+|.+. ...+|+|+|+....
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~ 38 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA 38 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence 4799999999999999999875 13589999997643
No 216
>PRK07233 hypothetical protein; Provisional
Probab=98.07 E-value=3.8e-06 Score=78.94 Aligned_cols=36 Identities=28% Similarity=0.456 Sum_probs=33.3
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
+|||||||++|+++|+.|++. |++|+|||+.+..++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-G~~v~vlE~~~~~GG 36 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQLGG 36 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCCC
Confidence 589999999999999999998 999999999987665
No 217
>PLN02268 probable polyamine oxidase
Probab=98.07 E-value=4.1e-06 Score=79.03 Aligned_cols=36 Identities=36% Similarity=0.552 Sum_probs=33.4
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
+|||||||++|+++|++|.++ |.+|+|||+.+..++
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~-g~~v~vlEa~~r~GG 37 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA-SFKVTLLESRDRIGG 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCc
Confidence 799999999999999999997 999999999887665
No 218
>PRK13748 putative mercuric reductase; Provisional
Probab=98.06 E-value=3.9e-06 Score=81.85 Aligned_cols=35 Identities=31% Similarity=0.417 Sum_probs=32.7
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.+||+||||+|++|+++|.+|++. |.+|+|||++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~-G~~v~lie~~~ 131 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ-GARVTLIERGT 131 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence 469999999999999999999998 99999999973
No 219
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.06 E-value=2e-05 Score=73.08 Aligned_cols=55 Identities=11% Similarity=0.094 Sum_probs=40.6
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhh
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSR 307 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~ 307 (310)
|...+++ |++++++++|++|..+ +++ .+|++. +|. .+.|+ .||+|+|.|++.|+.
T Consensus 141 l~~~~~~-G~~i~~~~~V~~i~~~--~~~-~~v~t~-~g~--~~~a~-~vV~a~G~~~~~l~~ 195 (381)
T TIGR03197 141 LLAHAGI-RLTLHFNTEITSLERD--GEG-WQLLDA-NGE--VIAAS-VVVLANGAQAGQLAQ 195 (381)
T ss_pred HHhccCC-CcEEEeCCEEEEEEEc--CCe-EEEEeC-CCC--EEEcC-EEEEcCCcccccccc
Confidence 3355667 9999999999999876 554 344433 442 36786 899999999988865
No 220
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.06 E-value=3.9e-06 Score=79.37 Aligned_cols=36 Identities=36% Similarity=0.435 Sum_probs=32.5
Q ss_pred cEEEECCChhHHHHHHHHhccCC--CeEEEEcCCCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAH--WSILLLEAGPDENE 94 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g--~~VlllE~g~~~~~ 94 (310)
+|||||||++|++||++|+++ | ++|+|+|+.+..++
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~-G~~~~V~vlEa~~~~GG 39 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK-GPDADITLLEASDRLGG 39 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh-CCCCCEEEEEcCCCCcc
Confidence 699999999999999999997 6 89999999876554
No 221
>PLN02576 protoporphyrinogen oxidase
Probab=98.05 E-value=5e-06 Score=79.78 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=35.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
...+||||||||++|+++|++|+++.|.+|+|+|+.+..++
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 34689999999999999999999842799999999876654
No 222
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.05 E-value=0.00037 Score=65.27 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=39.8
Q ss_pred ccCCCCcEEecCcEEEEEEEcCC--CCeEEEEEEEECCeEE--EEEcCeEEEEecc
Q psy17311 248 VRKRKNLHIAMRAHVTKILVNPA--TKKAYGVQFIRHGIKQ--TVLARREELEVIS 299 (310)
Q Consensus 248 ~~~~~g~~v~~~~~V~~I~~~~~--~~~v~GV~~~~~g~~~--~i~A~k~VIlaaG 299 (310)
.++..||++..+++|+.|.++.. ...|+++.+.++|+.. .+..+..|+++.|
T Consensus 216 ~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~G 271 (500)
T PF06100_consen 216 YLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNG 271 (500)
T ss_pred HHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECC
Confidence 35778999999999999999753 3467788887766544 4556778888878
No 223
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.05 E-value=5.2e-06 Score=79.33 Aligned_cols=35 Identities=20% Similarity=0.450 Sum_probs=31.8
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
.+||+||||+|++|..+|.++++..|.+|+|+|++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 46999999999999999999999438999999984
No 224
>PLN02507 glutathione reductase
Probab=98.03 E-value=4.5e-06 Score=80.13 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=31.5
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEA 88 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~ 88 (310)
.+||+||||+|++|..+|.+|++. |.+|+|+|+
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~-G~~V~liE~ 56 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANF-GAKVGICEL 56 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence 479999999999999999999998 999999996
No 225
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.97 E-value=7.2e-06 Score=75.69 Aligned_cols=34 Identities=41% Similarity=0.766 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPD 91 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~ 91 (310)
||||||||+||+++|++|++. +|.+|+|||+++.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~ 35 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT 35 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 899999999999999999983 5899999999864
No 226
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.94 E-value=9.3e-06 Score=77.16 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=33.6
Q ss_pred ccEEEECCChhHHHHHHHHhccC---CCeEEEEcCCCCCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVA---HWSILLLEAGPDENE 94 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~---g~~VlllE~g~~~~~ 94 (310)
.||+|||||++|+++|++|+++. |.+|+|+|+.+..++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG 43 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG 43 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcc
Confidence 59999999999999999999952 799999999876553
No 227
>PRK14727 putative mercuric reductase; Provisional
Probab=97.92 E-value=1.1e-05 Score=77.16 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=33.1
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
..||+||||+|++|..+|.+|++. |.+|+|+|+++.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~-g~~v~~ie~~~~ 50 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEH-GARVTIIEGADV 50 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCc
Confidence 469999999999999999999998 999999999743
No 228
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.89 E-value=1.4e-05 Score=66.93 Aligned_cols=32 Identities=38% Similarity=0.683 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
||||||||+||+.+|.+|++. +.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-GAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-TSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcC-CCeEEEEeccc
Confidence 799999999999999999986 99999998765
No 229
>PLN02568 polyamine oxidase
Probab=97.89 E-value=1.5e-05 Score=76.98 Aligned_cols=39 Identities=23% Similarity=0.464 Sum_probs=34.5
Q ss_pred CcccEEEECCChhHHHHHHHHhccCC-----CeEEEEcCCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAH-----WSILLLEAGPDENE 94 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g-----~~VlllE~g~~~~~ 94 (310)
..+||||||+|++|+++|.+|++. | .+|+|+|+....++
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~-g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTS-SAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc-ccccCCceEEEEeCCCCcCC
Confidence 357999999999999999999986 5 89999999887654
No 230
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.88 E-value=1.8e-05 Score=81.94 Aligned_cols=39 Identities=23% Similarity=0.477 Sum_probs=34.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
...+||+|||||+||+++|.+|++. |.+|+|+|+++...
T Consensus 161 ~~~~dVvIIGaGPAGLaAA~~aar~-G~~V~liD~~~~~G 199 (985)
T TIGR01372 161 NAHCDVLVVGAGPAGLAAALAAARA-GARVILVDEQPEAG 199 (985)
T ss_pred cccCCEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCCC
Confidence 3468999999999999999999997 99999999986544
No 231
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.88 E-value=1.2e-05 Score=76.94 Aligned_cols=33 Identities=39% Similarity=0.679 Sum_probs=31.3
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
+||+||||+|++|..+|.+|++. |++|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~-G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY-GAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence 59999999999999999999998 9999999974
No 232
>PRK10262 thioredoxin reductase; Provisional
Probab=97.88 E-value=1.2e-05 Score=72.68 Aligned_cols=53 Identities=9% Similarity=0.065 Sum_probs=40.3
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEEC---CeEEEEEcCeEEEEeccC
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRH---GIKQTVLARREELEVISF 300 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~---g~~~~i~A~k~VIlaaG~ 300 (310)
+.+..++.|+++++++.++++.-+ ++++.+|++.+. +...++.++ .||++.|.
T Consensus 191 ~~~~l~~~gV~i~~~~~v~~v~~~--~~~~~~v~~~~~~~~~~~~~i~~D-~vv~a~G~ 246 (321)
T PRK10262 191 LMDKVENGNIILHTNRTLEEVTGD--QMGVTGVRLRDTQNSDNIESLDVA-GLFVAIGH 246 (321)
T ss_pred HHhhccCCCeEEEeCCEEEEEEcC--CccEEEEEEEEcCCCCeEEEEECC-EEEEEeCC
Confidence 334556789999999999999765 556888888642 345578887 88888884
No 233
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.88 E-value=9e-05 Score=65.92 Aligned_cols=37 Identities=30% Similarity=0.315 Sum_probs=33.1
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
.-++.|||+|++|+++|+.|++. .+|+|+|++...++
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r--hdVTLfEA~~rlGG 44 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR--HDVTLFEADRRLGG 44 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc--cceEEEeccccccC
Confidence 46899999999999999999996 79999999987654
No 234
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=1.3e-05 Score=74.87 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=33.3
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
-|+|+|+|.||+++|++|+++ |++|+|+|+++..++
T Consensus 2 rVai~GaG~AgL~~a~~La~~-g~~vt~~ea~~~~GG 37 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADA-GYDVTLYEARDRLGG 37 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhC-CCceEEEeccCccCc
Confidence 489999999999999999998 999999999987664
No 235
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.84 E-value=2.1e-05 Score=72.45 Aligned_cols=39 Identities=28% Similarity=0.455 Sum_probs=35.4
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
...||||||+|.+||++|++|.++ |++|++||+.+...+
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~ka-G~~v~ilEar~r~GG 44 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDRVGG 44 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhc-CcEEEEEeccCCcCc
Confidence 468999999999999999999998 999999999876553
No 236
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.84 E-value=1.6e-05 Score=73.66 Aligned_cols=35 Identities=31% Similarity=0.337 Sum_probs=32.1
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE 92 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~ 92 (310)
-||+|||||.+|+.+|+.|++. |.+|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~-Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR-GVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCcc
Confidence 4999999999999999999997 9999999987654
No 237
>KOG0405|consensus
Probab=97.83 E-value=0.00017 Score=64.20 Aligned_cols=35 Identities=34% Similarity=0.592 Sum_probs=32.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
..+||+.|||+|.+|..+|.++++. |.+|.|+|..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~-GAkv~l~E~~ 52 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASH-GAKVALCELP 52 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhc-CceEEEEecC
Confidence 3589999999999999999999998 9999999976
No 238
>PLN02676 polyamine oxidase
Probab=97.82 E-value=2.2e-05 Score=75.17 Aligned_cols=38 Identities=34% Similarity=0.451 Sum_probs=34.2
Q ss_pred cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPDENE 94 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~~~~ 94 (310)
.+||||||+|++|+++|++|+++ |. +|+|||+.+..++
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRIGG 64 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCCCC
Confidence 58999999999999999999998 87 6999999876554
No 239
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00034 Score=62.34 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=40.3
Q ss_pred cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CCchhhh
Q psy17311 249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS-FRTTTLS 306 (310)
Q Consensus 249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~s~~ll 306 (310)
+.-+|++|++|+.-++|.=| +.+|+|..+++ +|..+.+.=. .|.+--| .-++..|
T Consensus 400 ~sl~Nv~ii~na~Ttei~Gd--g~kV~Gl~Y~dr~sge~~~l~Le-GvFVqIGL~PNT~WL 457 (520)
T COG3634 400 RSLPNVTIITNAQTTEVKGD--GDKVTGLEYRDRVSGEEHHLELE-GVFVQIGLLPNTEWL 457 (520)
T ss_pred hcCCCcEEEecceeeEEecC--CceecceEEEeccCCceeEEEee-eeEEEEecccChhHh
Confidence 44589999999999999888 88999999985 5666666654 5666556 3333333
No 240
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.82 E-value=1.8e-05 Score=75.33 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=32.2
Q ss_pred cEEEECCChhHHHHHHHHhccC-----CCeEEEEcCCCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVA-----HWSILLLEAGPDENE 94 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~-----g~~VlllE~g~~~~~ 94 (310)
+|||||||++|+++|++|++++ |.+|+|||+.+..++
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG 44 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence 6999999999999999999852 479999999877654
No 241
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.80 E-value=2.2e-05 Score=74.49 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=32.6
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
+|+|||+|++|+++|++|+++ |++|+|+|+.+..++
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~-G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADA-GHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCC
Confidence 589999999999999999998 999999999876554
No 242
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.77 E-value=3.3e-05 Score=75.89 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=33.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.+..+|+|||||++|+++|+.|++. |.+|+|+||.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEeccc
Confidence 4568999999999999999999998 99999999975
No 243
>KOG2614|consensus
Probab=97.77 E-value=3e-05 Score=70.46 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=33.0
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
+-+|||||||++|+++|..|++. |++|+|+|+...+.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~-G~~v~VlE~~e~~R 38 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRK-GIDVVVLESREDPR 38 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHc-CCeEEEEeeccccc
Confidence 35899999999999999999998 99999999965544
No 244
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.76 E-value=2.5e-05 Score=75.40 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=40.6
Q ss_pred CCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccC-Cchhhhh
Q psy17311 251 RKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISF-RTTTLSR 307 (310)
Q Consensus 251 ~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~-~s~~ll~ 307 (310)
+.|+++++++.|+++.-+ ++++.+|.+.+ +++...+.++ .||++.|. -++.+++
T Consensus 400 ~~gV~i~~~~~v~~i~~~--~~~v~~v~~~~~~~~~~~~i~~D-~vi~a~G~~Pn~~~l~ 456 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGD--GDKVTGIRYQDRNSGEEKQLDLD-GVFVQIGLVPNTEWLK 456 (515)
T ss_pred CCCCEEEECCeeEEEEcC--CCEEEEEEEEECCCCcEEEEEcC-EEEEEeCCcCCchHHh
Confidence 469999999999999766 67888998875 3555678887 78888884 3334443
No 245
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.75 E-value=3.1e-05 Score=79.16 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=34.7
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
..+||+|||||+||+++|++|++. |++|+|+|+.+...+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~-G~~VTV~Ek~~~lGG 574 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA-GHPVTVFEKKEKPGG 574 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEecccccCc
Confidence 358999999999999999999998 999999999865443
No 246
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.74 E-value=0.0013 Score=52.98 Aligned_cols=32 Identities=34% Similarity=0.571 Sum_probs=27.7
Q ss_pred EEECCChhHHHHHHHHhccC----CCeEEEEcCCCC
Q psy17311 60 IVIGGGSAGAVVASRLSEVA----HWSILLLEAGPD 91 (310)
Q Consensus 60 IVVGaG~aG~~aA~~Lae~~----g~~VlllE~g~~ 91 (310)
.|||+|++|++++.+|.+.. ..+|.|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 49999999999999999873 568999999654
No 247
>PRK12831 putative oxidoreductase; Provisional
Probab=97.73 E-value=5.2e-05 Score=72.17 Aligned_cols=38 Identities=26% Similarity=0.458 Sum_probs=34.1
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
...||+|||+|++|+++|++|++. |++|+|+|+.+...
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-G~~V~v~e~~~~~G 176 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-GYDVTIFEALHEPG 176 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCCC
Confidence 468999999999999999999998 99999999876543
No 248
>KOG2403|consensus
Probab=97.69 E-value=7.9e-05 Score=69.83 Aligned_cols=38 Identities=29% Similarity=0.400 Sum_probs=33.3
Q ss_pred cCCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 52 QLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 52 ~~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
..+..||.+|||+|.||+-+|..|+|. |.+|.++-+-.
T Consensus 51 ~~~~~~da~vvgaggAGlr~~~~lae~-g~~~a~itkl~ 88 (642)
T KOG2403|consen 51 QVDHTYDAVVVGAGGAGLRAARGLAEL-GEKTAVITKLF 88 (642)
T ss_pred eeeeeceeEEEeccchhhhhhhhhhhc-CceEEEEeccc
Confidence 345569999999999999999999998 99999988754
No 249
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.66 E-value=4.7e-05 Score=71.24 Aligned_cols=36 Identities=33% Similarity=0.466 Sum_probs=32.4
Q ss_pred cEEEECCChhHHHHHHHHhccCC--CeEEEEcCCCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAH--WSILLLEAGPDENE 94 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g--~~VlllE~g~~~~~ 94 (310)
-++|||||++|+++|++|.+. + ..|.|+|+++..++
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~-~p~~~i~lfE~~~r~GG 39 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKA-GPDVEVTLFEADDRVGG 39 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHh-CCCCcEEEEecCCCCCc
Confidence 379999999999999999997 7 89999999977654
No 250
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.65 E-value=4.6e-05 Score=71.07 Aligned_cols=34 Identities=35% Similarity=0.537 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
.||+|||||.+|+.+|..|++. |.+|+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~-G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQA-GVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhC-CCcEEEEecccc
Confidence 3899999999999999999998 999999998654
No 251
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.60 E-value=7.6e-05 Score=70.87 Aligned_cols=32 Identities=34% Similarity=0.672 Sum_probs=27.6
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
+||+||||+|++|..+|.++ . |.||+|+|++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~-g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--A-DKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--C-CCeEEEEeCCC
Confidence 59999999999999887554 4 99999999864
No 252
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.59 E-value=6.7e-05 Score=69.40 Aligned_cols=39 Identities=31% Similarity=0.537 Sum_probs=35.1
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
..-+++|||+|++|++||..||+. |.+|.|+||.+..++
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~-G~~v~LVEKepsiGG 161 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADM-GFKVYLVEKEPSIGG 161 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHc-CCeEEEEecCCcccc
Confidence 345899999999999999999998 999999999887654
No 253
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.58 E-value=7.1e-05 Score=71.45 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=32.5
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
+++|||+|++|+++|++|++. |++|+|+|+.+..++
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~-G~~v~v~E~~~~~GG 36 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDA-GHEVDIYESRSFIGG 36 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCCCc
Confidence 589999999999999999997 999999999876553
No 254
>PRK07846 mycothione reductase; Reviewed
Probab=97.58 E-value=8.2e-05 Score=70.59 Aligned_cols=32 Identities=34% Similarity=0.707 Sum_probs=28.1
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
+||+||||+|++|..+|.++ . |+||+|+|++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~-G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--A-DKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--C-CCeEEEEeCCC
Confidence 48999999999999998774 4 99999999864
No 255
>PLN02529 lysine-specific histone demethylase 1
Probab=97.58 E-value=0.0002 Score=71.27 Aligned_cols=39 Identities=26% Similarity=0.426 Sum_probs=34.9
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
.+.||+|||+|++|+++|..|++. |.+|+|+|+.+..++
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~GG 197 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSF-GFKVVVLEGRNRPGG 197 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHc-CCcEEEEecCccCcC
Confidence 468999999999999999999998 999999999765543
No 256
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.57 E-value=0.00011 Score=69.73 Aligned_cols=37 Identities=32% Similarity=0.405 Sum_probs=33.8
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE 92 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~ 92 (310)
..+||+|||+|++|+++|..|++. |++|+|+|+.+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~-G~~V~vie~~~~~ 168 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKA-GHSVTVFEALHKP 168 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence 468999999999999999999997 9999999997654
No 257
>KOG4716|consensus
Probab=97.56 E-value=7.1e-05 Score=66.29 Aligned_cols=35 Identities=34% Similarity=0.554 Sum_probs=32.4
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
..||.||||+|++|+++|-+++.. |.||.+||--.
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~-G~kV~~lDfV~ 52 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADL-GAKVACLDFVK 52 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhc-CCcEEEEeecc
Confidence 579999999999999999999998 99999999753
No 258
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.55 E-value=0.00011 Score=70.25 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=34.3
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
..+||+|||+|++|+++|..|++. |++|+|+|+.+...
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~-G~~V~vie~~~~~G 179 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA-GHKVTVFERADRIG 179 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCCCC
Confidence 457999999999999999999997 99999999987554
No 259
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.55 E-value=7.6e-05 Score=70.96 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
++||||+|++|+++|.+|++. |.+|+|+|++..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-GKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCcc
Confidence 799999999999999999997 999999999754
No 260
>PLN02612 phytoene desaturase
Probab=97.54 E-value=9.9e-05 Score=72.00 Aligned_cols=38 Identities=26% Similarity=0.324 Sum_probs=33.9
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
..||+|||+|.+|+++|++|++. |++|+|+|+.+..++
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~-g~~~~~~e~~~~~gG 130 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADA-GHKPILLEARDVLGG 130 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCCCCC
Confidence 47999999999999999999998 999999999765443
No 261
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.50 E-value=0.00013 Score=73.18 Aligned_cols=39 Identities=26% Similarity=0.472 Sum_probs=34.9
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
...||||||||++|+++|++|++. |.+|+|+|+....++
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~-g~~v~v~E~~~r~GG 275 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSM-GFKVVVLEGRARPGG 275 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeccccCCC
Confidence 468999999999999999999997 999999999876543
No 262
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.49 E-value=0.00011 Score=75.53 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=34.6
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
..+|+|||||+||+++|+.|++. |++|+|+|+.+...+
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~-G~~VtVfE~~~~~GG 343 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVE-GFPVTVFEAFHDLGG 343 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCCCCc
Confidence 57999999999999999999998 999999999876554
No 263
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.47 E-value=0.00013 Score=68.28 Aligned_cols=41 Identities=24% Similarity=0.433 Sum_probs=32.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
|+++|||||+|.|..-+.+|..|++. |+|||.||+++..++
T Consensus 1 m~~~yDviI~GTGl~esila~als~~-GkkVLhiD~n~yYGg 41 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRS-GKKVLHIDRNDYYGG 41 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSSCG
T ss_pred CCccceEEEECCCcHHHHHHHHHHhc-CCEEEecCCCCCcCC
Confidence 56899999999999999999999998 999999999988775
No 264
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.44 E-value=0.00016 Score=73.00 Aligned_cols=38 Identities=26% Similarity=0.370 Sum_probs=33.8
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
...||+|||||+||+++|..|++. |++|+|+|+.+...
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~-G~~V~v~e~~~~~G 467 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKR-GYDVTVFEALHEIG 467 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence 457999999999999999999998 99999999965443
No 265
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.44 E-value=0.00014 Score=74.22 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=34.5
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
..-+|+|||||+||+++|+.|++. |++|+|+|+.+...+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~-G~~VtV~Ek~~~~GG 576 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARA-GHPVTVFEREENAGG 576 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCeEEEEecccccCc
Confidence 356999999999999999999998 999999999865543
No 266
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.44 E-value=0.00014 Score=75.23 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=34.3
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
...+|+|||||+||+++|..|++. |++|+|+|+.+...
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~-G~~VtV~E~~~~~G 466 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY-GVDVTVYEALHVVG 466 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCc
Confidence 357999999999999999999998 99999999987554
No 267
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.43 E-value=0.00026 Score=50.16 Aligned_cols=34 Identities=32% Similarity=0.447 Sum_probs=31.2
Q ss_pred EEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
++|||+|..|+-+|..|++. |.+|.|||+.+...
T Consensus 2 vvViGgG~ig~E~A~~l~~~-g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAEL-GKEVTLIERSDRLL 35 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHT-TSEEEEEESSSSSS
T ss_pred EEEECcCHHHHHHHHHHHHh-CcEEEEEeccchhh
Confidence 79999999999999999997 99999999997533
No 268
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.43 E-value=0.00017 Score=71.68 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=34.1
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
...+|+|||+|++|+++|..|++. |++|+|+|+.+..+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~-G~~V~V~E~~~~~G 363 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN-GVAVTVYDRHPEIG 363 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence 357999999999999999999998 99999999986544
No 269
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.43 E-value=0.00016 Score=68.87 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
|+||||+|++|+.+|.+|++. |.+|+|+|++.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~-g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQL-GADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence 899999999999999999998 99999999875
No 270
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.42 E-value=0.00021 Score=68.08 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=34.3
Q ss_pred CcccEEEECCChhHHHHHHHHhc-cCCCeEEEEcCCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSE-VAHWSILLLEAGPDENE 94 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae-~~g~~VlllE~g~~~~~ 94 (310)
...+|+|||||+||+.+|..|++ ..|++|+|+|+.+.+.+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG 65 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG 65 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc
Confidence 35689999999999999999986 23899999999987654
No 271
>KOG0685|consensus
Probab=97.42 E-value=0.00017 Score=66.71 Aligned_cols=40 Identities=33% Similarity=0.472 Sum_probs=35.1
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
...-|||||||+||++||.+|-++...+|+|+|+.+..++
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 4568999999999999999999886778999999887664
No 272
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.41 E-value=0.0002 Score=68.11 Aligned_cols=38 Identities=29% Similarity=0.455 Sum_probs=34.0
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
...+|+|||+|++|+++|..|++. |++|+|+|+.+...
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~-g~~V~lie~~~~~g 176 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARK-GYDVTIFEARDKAG 176 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCCC
Confidence 357999999999999999999998 99999999987543
No 273
>PLN02487 zeta-carotene desaturase
Probab=97.37 E-value=0.00027 Score=68.64 Aligned_cols=38 Identities=24% Similarity=0.313 Sum_probs=34.2
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
..+|+|||+|++|+++|++|++. |++|+|+|+.+..++
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~-g~~v~i~E~~~~~gG 112 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRPFIGG 112 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CCeeEEEecCCCCCC
Confidence 36999999999999999999998 999999999876553
No 274
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.33 E-value=0.0002 Score=72.40 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=31.0
Q ss_pred cEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPD 91 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~ 91 (310)
+|+|||||++|+++|+.|++. +|++|+|+||.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 699999999999999999995 3899999999874
No 275
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.27 E-value=0.00033 Score=69.52 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=34.0
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
...+|+|||+|++|+++|..|++. |++|+|+|+.+...
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~-G~~Vtv~e~~~~~G 229 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK-GHDVTIFDANEQAG 229 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence 357999999999999999999998 99999999986543
No 276
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.19 E-value=0.00049 Score=65.60 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=34.0
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
...+|+|||+|++|+++|..|++. |.+|+++|+.+...
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~-G~~V~i~e~~~~~g 177 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA-GVQVVVFDRHPEIG 177 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCC
Confidence 457999999999999999999997 99999999987543
No 277
>PLN03000 amine oxidase
Probab=97.19 E-value=0.00045 Score=69.49 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=35.2
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
...||+|||+|++|+.+|.+|++. |++|+|+|+.+..++
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~-G~~V~VlE~~~riGG 221 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRF-GFKVTVLEGRKRPGG 221 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC-CCcEEEEEccCcCCC
Confidence 358999999999999999999997 999999999876654
No 278
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.18 E-value=0.0041 Score=59.23 Aligned_cols=32 Identities=34% Similarity=0.552 Sum_probs=28.2
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~ 205 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASL-GAEVTIVEALP 205 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence 589999999999999999887 88999999875
No 279
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.18 E-value=0.0056 Score=59.19 Aligned_cols=32 Identities=34% Similarity=0.520 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.++|||+|..|+-+|..|++. +.+|.|+|+++
T Consensus 354 ~VvViGgG~~g~E~A~~L~~~-g~~Vtli~~~~ 385 (515)
T TIGR03140 354 DVAVIGGGNSGIEAAIDLAGI-VRHVTVLEFAD 385 (515)
T ss_pred EEEEECCcHHHHHHHHHHHhc-CcEEEEEEeCC
Confidence 799999999999999999997 89999999764
No 280
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.18 E-value=0.00053 Score=69.59 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=32.2
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
....|+|||+|+||+++|++|++. |++|+|+|+.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~-Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS-GHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-CCeEEEEcccc
Confidence 457999999999999999999997 99999999864
No 281
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.17 E-value=0.00059 Score=62.59 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=33.6
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
..+|+|||+|.+|+.+|.+|++. |++|+|+|+.+...
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~g 54 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACL-GYEVHVYDKLPEPG 54 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCC
Confidence 35999999999999999999997 99999999987654
No 282
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.16 E-value=0.0039 Score=59.28 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-+++|||+|.+|+-+|..|++. |.+|.|+|+++
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~ 203 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASL-GSKVTVIEMLD 203 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCC
Confidence 4799999999999999999998 99999999875
No 283
>KOG3855|consensus
Probab=97.10 E-value=0.00052 Score=62.48 Aligned_cols=37 Identities=35% Similarity=0.715 Sum_probs=32.5
Q ss_pred CcccEEEECCChhHHHHHHHHhccC---CCeEEEEcCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVA---HWSILLLEAGPD 91 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~---g~~VlllE~g~~ 91 (310)
..|||||||||++|.+.|..|..++ .+||+|+|.+..
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 4799999999999999999998754 579999999954
No 284
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.09 E-value=0.0052 Score=58.69 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.++|||+|.+|+-+|..|++. |.+|.|+|+++
T Consensus 182 ~vvIIGgG~~G~E~A~~l~~~-g~~Vtli~~~~ 213 (472)
T PRK05976 182 SLVIVGGGVIGLEWASMLADF-GVEVTVVEAAD 213 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCeEEEEEecC
Confidence 699999999999999999997 99999999875
No 285
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.09 E-value=0.0048 Score=58.79 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~-g~~Vtli~~~~ 199 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARL-GSEVTILQRSD 199 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCC
Confidence 3799999999999999999997 99999999875
No 286
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.09 E-value=0.00063 Score=64.36 Aligned_cols=39 Identities=15% Similarity=0.270 Sum_probs=33.5
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
..-|.|||||+||+.+|.+|+...|.+|.|+|+.+.+.+
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgG 77 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG 77 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence 357999999999999999876434999999999988765
No 287
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.08 E-value=0.0051 Score=58.54 Aligned_cols=32 Identities=28% Similarity=0.563 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
+++|||+|.+|+-+|..|++. |.+|.|+|+++
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~ 203 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRL-GTKVTIVEMAP 203 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 699999999999999999997 89999999875
No 288
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.07 E-value=0.00086 Score=66.46 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=34.4
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
...+|+|||+|++|+++|..|++. |++|+++|+.+...
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~-G~~Vtv~e~~~~~G 346 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA-GVQVDVFDRHPEIG 346 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc-CCcEEEEeCCCCCC
Confidence 357999999999999999999997 99999999987654
No 289
>PLN02976 amine oxidase
Probab=97.06 E-value=0.00069 Score=70.99 Aligned_cols=39 Identities=31% Similarity=0.445 Sum_probs=34.6
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
..+||+|||+|++|+++|++|++. |++|+|||+.+..++
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~-G~~V~VlEa~~~vGG 730 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQ-GFSVTVLEARSRIGG 730 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHC-CCcEEEEeeccCCCC
Confidence 358999999999999999999997 999999999765543
No 290
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.04 E-value=0.00081 Score=64.43 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=33.1
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE 92 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~ 92 (310)
..+|+|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~-g~~V~v~e~~~~~ 178 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRA-GHTVTVFEREDRC 178 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence 47999999999999999999997 9999999998754
No 291
>PRK06370 mercuric reductase; Validated
Probab=97.01 E-value=0.0062 Score=58.04 Aligned_cols=32 Identities=28% Similarity=0.580 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 173 ~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~ 204 (463)
T PRK06370 173 HLVIIGGGYIGLEFAQMFRRF-GSEVTVIERGP 204 (463)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence 689999999999999999997 99999999875
No 292
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.01 E-value=0.0074 Score=57.56 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=28.1
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtlv~~~~ 205 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNY-GVDVTIVEFLD 205 (466)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 689999999999999999987 88999998764
No 293
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.01 E-value=0.0012 Score=64.55 Aligned_cols=38 Identities=34% Similarity=0.537 Sum_probs=33.7
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
..-+|+|||+|++|+++|..|++. |.+|+|+|+.+...
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~-G~~V~v~e~~~~~G 173 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRM-GHAVTIFEAGPKLG 173 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence 346899999999999999999998 99999999976544
No 294
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.95 E-value=0.0065 Score=56.25 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~-g~~Vtlv~~~~ 174 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRA-GKAVTLVDNAA 174 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhc-CCeEEEEecCC
Confidence 3699999999999999999997 99999999875
No 295
>PRK10262 thioredoxin reductase; Provisional
Probab=96.93 E-value=0.019 Score=51.81 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.++|||+|..|+-+|..|++. +.+|.++++.+
T Consensus 148 ~vvVvGgG~~g~e~A~~l~~~-~~~Vtlv~~~~ 179 (321)
T PRK10262 148 KVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRD 179 (321)
T ss_pred EEEEECCCHHHHHHHHHHHhh-CCEEEEEEECC
Confidence 799999999999999999997 89999999864
No 296
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.88 E-value=0.011 Score=56.62 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=28.6
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~ 216 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRRL-GAEVTILEALP 216 (475)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCC
Confidence 789999999999999999987 89999999875
No 297
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.87 E-value=0.0095 Score=55.71 Aligned_cols=35 Identities=29% Similarity=0.534 Sum_probs=29.2
Q ss_pred ccEEEECCChhHHHHHHHHhccC--CCeEEEEcCCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVA--HWSILLLEAGPD 91 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~--g~~VlllE~g~~ 91 (310)
++|.|||+|..|..+|.+|.+.+ ..+|.|+|+-+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 69999999999999999998842 223999998764
No 298
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.86 E-value=0.011 Score=56.43 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=28.5
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 176 ~vvIIGgG~ig~E~A~~l~~~-G~~Vtlie~~~ 207 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRRL-GAQVTVVEYLD 207 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCC
Confidence 689999999999999999987 89999999865
No 299
>PRK13984 putative oxidoreductase; Provisional
Probab=96.83 E-value=0.0017 Score=64.04 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=34.2
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
...+|+|||+|++|+++|..|++. |++|+|+|+.+...
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~-G~~v~vie~~~~~g 319 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATM-GYEVTVYESLSKPG 319 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence 457999999999999999999998 99999999987543
No 300
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.79 E-value=0.0018 Score=59.66 Aligned_cols=87 Identities=11% Similarity=-0.014 Sum_probs=51.2
Q ss_pred hHHHHHHHcCCCCC-CCCCCCCccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEE
Q psy17311 202 HDVEAGQELGYENR-DINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFI 280 (310)
Q Consensus 202 ~~~~~~~~~G~~~~-~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~ 280 (310)
++++.++++|++.. +-++ ..++.. ....+...+ |...+++.|++|+++++|++| + +++ .+|.+.
T Consensus 58 d~~~fF~~~Gi~~~~e~~g-----rvfP~S----~~A~sVv~~-L~~~l~~~gV~i~~~~~V~~i--~--~~~-~~v~~~ 122 (376)
T TIGR03862 58 ALQDWARGLGIETFVGSSG-----RVFPVE----MKAAPLLRA-WLKRLAEQGVQFHTRHRWIGW--Q--GGT-LRFETP 122 (376)
T ss_pred HHHHHHHHCCCceEECCCC-----EECCCC----CCHHHHHHH-HHHHHHHCCCEEEeCCEEEEE--e--CCc-EEEEEC
Confidence 78888999999763 2222 222111 111223333 445677899999999999999 4 332 455543
Q ss_pred ECCeEEEEEcCeEEEEeccCCchhh
Q psy17311 281 RHGIKQTVLARREELEVISFRTTTL 305 (310)
Q Consensus 281 ~~g~~~~i~A~k~VIlaaG~~s~~l 305 (310)
.++ ..++|++.||+++|.-.|.+
T Consensus 123 ~~~--~~~~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 123 DGQ--STIEADAVVLALGGASWSQL 145 (376)
T ss_pred CCc--eEEecCEEEEcCCCcccccc
Confidence 222 25789865555556655543
No 301
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.75 E-value=0.017 Score=54.84 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.|||||+|..|+-+|..|++. |.+|.|+++.+
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~-G~~Vtlv~~~~ 305 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRL-GAEVHCLYRRT 305 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEeecC
Confidence 699999999999999999998 99999998763
No 302
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.73 E-value=0.0092 Score=60.93 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~-G~~VtvVe~~~ 178 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNL-GVETHVIEFAP 178 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEeccc
Confidence 589999999999999999998 99999999865
No 303
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.73 E-value=0.024 Score=50.26 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=37.9
Q ss_pred CCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCCc-hhhhh
Q psy17311 252 KNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFRT-TTLSR 307 (310)
Q Consensus 252 ~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s-~~ll~ 307 (310)
.|++++++++++++..+ +++.+|++.+ +++..++.++ .||+|+|+.. ..+++
T Consensus 190 ~gv~~~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~~~~~~l~ 244 (300)
T TIGR01292 190 PNIEFLWNSTVKEIVGD---NKVEGVKIKNTVTGEEEELKVD-GVFIAIGHEPNTELLK 244 (300)
T ss_pred CCeEEEeccEEEEEEcc---CcEEEEEEEecCCCceEEEEcc-EEEEeeCCCCChHHHH
Confidence 48999999999999754 3677887754 4556788887 8999999543 33444
No 304
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.67 E-value=0.0021 Score=59.95 Aligned_cols=34 Identities=26% Similarity=0.504 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHhccCCC--eEEEEcCCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHW--SILLLEAGPD 91 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~~ 91 (310)
.+|||||+|+||+.+|..|.+. +. +|+|+++.+.
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~-~~~~~I~li~~e~~ 39 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQ-GFTGELHLFSDERH 39 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhh-CCCCCEEEeCCCCC
Confidence 5899999999999999999996 65 7999998754
No 305
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=96.64 E-value=0.015 Score=55.30 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~ 199 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGL-GSETHLVIRHE 199 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCC
Confidence 699999999999999999997 99999999875
No 306
>KOG1276|consensus
Probab=96.63 E-value=0.0021 Score=58.91 Aligned_cols=40 Identities=30% Similarity=0.458 Sum_probs=32.4
Q ss_pred CcccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPDENE 94 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~~~~ 94 (310)
..-+|+|||+|++|+++|++|++. +...|+|.|+++..++
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG 50 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG 50 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence 356999999999999999999996 2234677999887554
No 307
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.61 E-value=0.002 Score=60.91 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPD 91 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~ 91 (310)
.|||||+|.+|+++|..|++. ++.+|+|+|+.+.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~ 36 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI 36 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence 599999999999999999985 2358999999875
No 308
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.61 E-value=0.01 Score=60.26 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~-G~~Vtvv~~~~ 173 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNL-GMDVSVIHHAP 173 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCeEEEEccCC
Confidence 689999999999999999998 99999999764
No 309
>PRK12831 putative oxidoreductase; Provisional
Probab=96.50 E-value=0.026 Score=53.79 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.|+|||+|..|+-+|..|.+. |.+|.|+++.+
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~-Ga~Vtlv~r~~ 314 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRL-GAEVHIVYRRS 314 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCEEEEEeecC
Confidence 799999999999999999998 88999998653
No 310
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.49 E-value=0.018 Score=54.42 Aligned_cols=33 Identities=12% Similarity=0.277 Sum_probs=29.8
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-.++|||+|..|+-+|..|.+. |.+|.++++++
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtli~~~~ 182 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHL-GKNVRIIQLED 182 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCcEEEEeCCc
Confidence 3699999999999999999997 99999998764
No 311
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.43 E-value=0.0037 Score=59.14 Aligned_cols=34 Identities=29% Similarity=0.522 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPD 91 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~ 91 (310)
.|||||+|.+|+.+|.+|.+. ++.+|+|+|+.+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 699999999999999999874 3678999999864
No 312
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.39 E-value=0.05 Score=49.93 Aligned_cols=38 Identities=34% Similarity=0.392 Sum_probs=34.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
...+|+|.||-|++-++.|.-|.+..+.+++.|||-+.
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~ 40 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD 40 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCC
Confidence 35699999999999999999999986789999999864
No 313
>PRK06116 glutathione reductase; Validated
Probab=96.37 E-value=0.046 Score=51.89 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=29.0
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-.++|||+|..|+-+|..|++. |.+|.++++++
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~ 200 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGL-GSETHLFVRGD 200 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 3689999999999999999987 89999999775
No 314
>KOG1439|consensus
Probab=96.34 E-value=0.0025 Score=57.95 Aligned_cols=41 Identities=24% Similarity=0.380 Sum_probs=37.3
Q ss_pred CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
|+++|||||+|.|.-=|..+..|+.+ |.+||.+||.+..++
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~-gkkVLhiDrN~yYG~ 41 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSVD-GKKVLHIDRNDYYGG 41 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeeec-CcEEEEEeCCCCCCc
Confidence 45679999999999999999999998 999999999987664
No 315
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.32 E-value=0.0057 Score=57.59 Aligned_cols=36 Identities=22% Similarity=0.427 Sum_probs=31.7
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
...+|||||+|.+|+.+|.+|... +.+|+|||+.+.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~-~~~ItlI~~~~~ 44 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPK-KYNITVISPRNH 44 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcC-CCeEEEEcCCCC
Confidence 357999999999999999999775 789999998764
No 316
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.28 E-value=0.033 Score=53.40 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=25.7
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEA 88 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~ 88 (310)
.++|||+|..|+-+|..|++. |.+|.|+++
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~ 211 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGI-GLDVTVMVR 211 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHh-CCcEEEEEe
Confidence 588899999999888888887 888888875
No 317
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.15 E-value=0.046 Score=52.00 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=28.5
Q ss_pred ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAG 89 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g 89 (310)
-.|+|||+|..|+-+|..|++. |. +|.++++.
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~-G~~~Vtlv~~~ 306 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRL-GAESVTIVYRR 306 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCCeEEEeeec
Confidence 3799999999999999999997 76 89999865
No 318
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.15 E-value=0.0059 Score=57.78 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=34.6
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
.-.|-|||||++|+.+|..|+++ |++|++.|+-+...+
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~-G~~Vtv~e~~~~~GG 160 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRA-GHDVTVFERVALDGG 160 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhC-CCeEEEeCCcCCCce
Confidence 36999999999999999999998 999999999877664
No 319
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.14 E-value=0.0087 Score=55.01 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhcc--CCCeEEEEcCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEV--AHWSILLLEAGPDE 92 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~--~g~~VlllE~g~~~ 92 (310)
.|||||+|.+|+.+|.+|.++ ++.+|+|+|+.+..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 489999999999999999642 46899999988653
No 320
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.10 E-value=0.044 Score=52.60 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=32.2
Q ss_pred cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccC
Q psy17311 249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISF 300 (310)
Q Consensus 249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~ 300 (310)
.++.|+++++++.|++|..+ ++....|.+. +++ ++.++ .||+|.|.
T Consensus 241 L~~~GI~i~~~~~v~~i~~~--~~~~~~v~~~-~g~--~i~~D-~vl~a~G~ 286 (486)
T TIGR01423 241 LRANGINIMTNENPAKVTLN--ADGSKHVTFE-SGK--TLDVD-VVMMAIGR 286 (486)
T ss_pred HHHcCCEEEcCCEEEEEEEc--CCceEEEEEc-CCC--EEEcC-EEEEeeCC
Confidence 35679999999999999865 3333445543 343 57887 78888884
No 321
>KOG1800|consensus
Probab=96.08 E-value=0.0083 Score=54.33 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=34.1
Q ss_pred ccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCCCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPDENE 94 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~~~~ 94 (310)
.-|.|||||+||..+|.+|-++ ++.+|.++|+-+.+.+
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG 59 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG 59 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence 4899999999999999999984 6899999999988765
No 322
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.011 Score=53.38 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=35.2
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
.|||||+|.|..=|+.+..|+.+ |.+||.||+.+..+.
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~-~k~VlhiD~Nd~YG~ 43 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWD-GKNVLHIDKNDYYGS 43 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhc-CceEEEEeCCCccCc
Confidence 69999999999999999999998 999999999987653
No 323
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.98 E-value=0.065 Score=51.23 Aligned_cols=50 Identities=16% Similarity=0.225 Sum_probs=38.4
Q ss_pred CCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-----------CCeEEEEEcCeEEEEeccCCc
Q psy17311 250 KRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-----------HGIKQTVLARREELEVISFRT 302 (310)
Q Consensus 250 ~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-----------~g~~~~i~A~k~VIlaaG~~s 302 (310)
++.|+++++++.+++|.-+ ++++++|++.+ .+....+.++ .||+|.|...
T Consensus 340 ~~~GV~i~~~~~~~~i~~~--~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D-~VI~A~G~~p 400 (471)
T PRK12810 340 HEEGVEREFNVQTKEFEGE--NGKVTGVKVVRTELGEGDFEPVEGSEFVLPAD-LVLLAMGFTG 400 (471)
T ss_pred HHcCCeEEeccCceEEEcc--CCEEEEEEEEEEEecCCCccccCCceEEEECC-EEEECcCcCC
Confidence 4568999999999999765 78899988652 2445688997 8899999543
No 324
>KOG4405|consensus
Probab=95.95 E-value=0.0089 Score=54.55 Aligned_cols=41 Identities=29% Similarity=0.410 Sum_probs=37.2
Q ss_pred CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
++++||+||||.|.-=++.|...++. |.+||=||..+..++
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrs-G~sVLHlDsn~yYGg 45 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRS-GSSVLHLDSNEYYGG 45 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhc-CCceEeccCccccCC
Confidence 45789999999999999999999997 999999999887664
No 325
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.78 E-value=0.0079 Score=53.49 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
--|.|||+|.||+-+|+++|+. |.+|.|.|--+.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~-Gv~V~L~EMRp~ 37 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKR-GVPVILYEMRPV 37 (439)
T ss_pred CceEEEcccccccHHHHHHHHc-CCcEEEEEcccc
Confidence 4689999999999999999998 999999996554
No 326
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.69 E-value=0.013 Score=54.16 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPD 91 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~ 91 (310)
.|+||||+|+||+.+|.+|.+. +..+|+||++.+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 4899999999999999999873 3568999988664
No 327
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.62 E-value=0.017 Score=45.93 Aligned_cols=31 Identities=29% Similarity=0.666 Sum_probs=28.8
Q ss_pred EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
+.|||+|..|+..|.+|++. |.+|.++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-GHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-CCceEEEEccc
Confidence 68999999999999999996 99999999875
No 328
>KOG2755|consensus
Probab=95.55 E-value=0.01 Score=51.17 Aligned_cols=35 Identities=40% Similarity=0.584 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhc-cCCCeEEEEcCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSE-VAHWSILLLEAGPDE 92 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae-~~g~~VlllE~g~~~ 92 (310)
.+||||+|+||.++|-.|+. .|..+||||-+.+..
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 37999999999999999998 357799999887653
No 329
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=95.52 E-value=0.12 Score=52.49 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=28.5
Q ss_pred cEEEECCChhHHHHHHHHhccCCCe-EEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWS-ILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~-VlllE~g~ 90 (310)
.|||||+|..|+-+|..|.+. |.+ |.|+++.+
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtlv~r~~ 604 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRL-GAERVTIVYRRS 604 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHc-CCCeEEEeeecC
Confidence 699999999999999999997 776 99998653
No 330
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.40 E-value=0.28 Score=44.83 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=29.8
Q ss_pred CCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccC
Q psy17311 250 KRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISF 300 (310)
Q Consensus 250 ~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~ 300 (310)
.+..++++.+++|+.+..++ ++++ -+.+.+ .+....+.++ .||+|+|+
T Consensus 290 g~~~~~l~~~~~v~~~~~~~-~~~~-~l~~~~~~~~~~~~~~~D-~VilATGy 339 (341)
T PF13434_consen 290 GRGRLRLLPNTEVTSAEQDG-DGGV-RLTLRHRQTGEEETLEVD-AVILATGY 339 (341)
T ss_dssp T---SEEETTEEEEEEEEES--SSE-EEEEEETTT--EEEEEES-EEEE---E
T ss_pred CCCCeEEeCCCEEEEEEECC-CCEE-EEEEEECCCCCeEEEecC-EEEEcCCc
Confidence 34569999999999999983 2433 344554 5667788998 89999997
No 331
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=95.35 E-value=0.24 Score=51.44 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=28.4
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
.|||||+|..|+=+|..+.+. |.+|.++.+.
T Consensus 449 ~VvVIGGG~tA~D~A~ta~R~-Ga~Vtlv~rr 479 (944)
T PRK12779 449 EVFVIGGGNTAMDAARTAKRL-GGNVTIVYRR 479 (944)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCEEEEEEec
Confidence 699999999999999999997 8899998765
No 332
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=95.22 E-value=0.027 Score=54.14 Aligned_cols=37 Identities=38% Similarity=0.448 Sum_probs=34.6
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
|||||||||++|+++|..|+++ |++|+||||...+++
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~-G~~V~vlE~~~~~GG 37 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVK-GAKVLVLERYLIPGG 37 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHC-CCcEEEEECCCCCCC
Confidence 7999999999999999999998 999999999987664
No 333
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=95.22 E-value=0.022 Score=52.77 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
-+++|||+|.+|+-+|..|++. |.+|+|+|+.+...+
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~-G~~v~l~e~~~~~~~ 173 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKR-GKKVTLIEAADRLGG 173 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEcccccch
Confidence 5999999999999999999998 999999999987654
No 334
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.21 E-value=0.18 Score=50.39 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=27.3
Q ss_pred cEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~ 90 (310)
.|||||+|..|+-+|..+.+. |. +|.++++.+
T Consensus 470 ~VvVIGgG~~a~d~A~~a~r~-ga~~Vt~i~~~~ 502 (654)
T PRK12769 470 NVVVLGGGDTAMDCVRTALRH-GASNVTCAYRRD 502 (654)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCCeEEEeEecC
Confidence 699999999999999988887 65 699887653
No 335
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.21 E-value=0.025 Score=45.58 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=28.8
Q ss_pred EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
|.|||+|..|.++|..|+++ |.+|.|..+.+
T Consensus 2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHC-TEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHc-CCEEEEEeccH
Confidence 78999999999999999998 99999998764
No 336
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.16 E-value=0.022 Score=48.76 Aligned_cols=32 Identities=34% Similarity=0.596 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.++|||+|-.|..+|..|++. |.+|+++|+.+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCH
Confidence 589999999999999999998 99999999875
No 337
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.03 E-value=0.23 Score=47.39 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=28.6
Q ss_pred ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~ 90 (310)
-.++|||+|..|+-+|..+.+. |. +|.|+++.+
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~-Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRL-GAASVTCAYRRD 316 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCeEEEEEecC
Confidence 3799999999999999999887 74 799998764
No 338
>KOG0404|consensus
Probab=94.71 E-value=0.03 Score=47.26 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=38.2
Q ss_pred hhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc
Q psy17311 244 FLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS 299 (310)
Q Consensus 244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG 299 (310)
+..++.+.+|+++++|+.+.+..-+ ++...|+.+++ .|....+..+ .+.-+-|
T Consensus 198 Mq~ra~~npnI~v~~nt~~~ea~gd--~~~l~~l~ikn~~tge~~dl~v~-GlFf~IG 252 (322)
T KOG0404|consen 198 MQQRAEKNPNIEVLYNTVAVEALGD--GKLLNGLRIKNVKTGEETDLPVS-GLFFAIG 252 (322)
T ss_pred HHHHHhcCCCeEEEechhhhhhccC--cccccceEEEecccCcccccccc-eeEEEec
Confidence 3445667789999999998888766 67777777764 5666667765 6666666
No 339
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.63 E-value=0.33 Score=50.77 Aligned_cols=54 Identities=17% Similarity=0.095 Sum_probs=38.9
Q ss_pred CCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEeccC-Cchhhhh
Q psy17311 250 KRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVISF-RTTTLSR 307 (310)
Q Consensus 250 ~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaaG~-~s~~ll~ 307 (310)
++.|+++++++.|+++.- ++++.+|++.. ++...++.++ .|+++.|+ -+..|++
T Consensus 362 ~~~GV~i~~~~~v~~i~g---~~~v~~V~l~~~~g~~~~i~~D-~V~va~G~~Pnt~L~~ 417 (985)
T TIGR01372 362 RELGIEVLTGHVVAATEG---GKRVSGVAVARNGGAGQRLEAD-ALAVSGGWTPVVHLFS 417 (985)
T ss_pred HHcCCEEEcCCeEEEEec---CCcEEEEEEEecCCceEEEECC-EEEEcCCcCchhHHHH
Confidence 456899999999999853 45688888874 4445678897 88888884 3444543
No 340
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.56 E-value=0.053 Score=44.75 Aligned_cols=31 Identities=26% Similarity=0.546 Sum_probs=27.1
Q ss_pred EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
|.|||+|..|...|..++.. |.+|.|+|..+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhC-CCcEEEEECCh
Confidence 68999999999999999998 99999999864
No 341
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=94.53 E-value=0.045 Score=51.02 Aligned_cols=34 Identities=15% Similarity=0.396 Sum_probs=31.4
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE 92 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~ 92 (310)
.++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~ 179 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQR-RCKVTVIELAATV 179 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCcc
Confidence 699999999999999999997 9999999998754
No 342
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=94.32 E-value=0.093 Score=47.73 Aligned_cols=52 Identities=10% Similarity=0.059 Sum_probs=37.8
Q ss_pred cCCCCcEEecCcEEEEEEEcCCCCeEE--EEEEEECCeEEEEEcCeEEEEeccC
Q psy17311 249 RKRKNLHIAMRAHVTKILVNPATKKAY--GVQFIRHGIKQTVLARREELEVISF 300 (310)
Q Consensus 249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~--GV~~~~~g~~~~i~A~k~VIlaaG~ 300 (310)
++..+|++..+++|+.|.++...|+.+ .+.+..+++...+..+.-|+++.|.
T Consensus 237 L~~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih~~~d~~~ieLt~dDlVfvTNgs 290 (587)
T COG4716 237 LKSHGVDFTYDQKVEDIDVDDTPGKKVAKAIHVLGDAETIELTPDDLVFVTNGS 290 (587)
T ss_pred HHHcCCceEeccEEeeeeeccCcchhHHHHHHHhcCcceeecCCCceEEEecce
Confidence 477899999999999999986555322 2222335666777888888888873
No 343
>KOG1336|consensus
Probab=94.18 E-value=0.39 Score=45.06 Aligned_cols=46 Identities=15% Similarity=0.076 Sum_probs=37.0
Q ss_pred cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc
Q psy17311 249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS 299 (310)
Q Consensus 249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG 299 (310)
.++.|++++.++.+.++..++ +|+++-|.+.++. ++.|+ .||+..|
T Consensus 265 ~e~kgVk~~~~t~~s~l~~~~-~Gev~~V~l~dg~---~l~ad-lvv~GiG 310 (478)
T KOG1336|consen 265 YENKGVKFYLGTVVSSLEGNS-DGEVSEVKLKDGK---TLEAD-LVVVGIG 310 (478)
T ss_pred HHhcCeEEEEecceeecccCC-CCcEEEEEeccCC---EeccC-eEEEeec
Confidence 467899999999999999886 6889888877443 67887 7777777
No 344
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.17 E-value=0.056 Score=48.58 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.|.|||+|..|+..|.+|++. |.+|.++.|+.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARA-GLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCCeEEEEech
Confidence 699999999999999999997 99999999974
No 345
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=94.13 E-value=0.056 Score=55.04 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=37.6
Q ss_pred hhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCC
Q psy17311 244 FLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFR 301 (310)
Q Consensus 244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~ 301 (310)
.+.+..++.|+++++++.|++|.-+ +++.+|.+. +|+ .+.++ .||+++|+.
T Consensus 187 ~l~~~l~~~GV~v~~~~~v~~i~~~---~~~~~v~~~-dG~--~i~~D-~Vi~a~G~~ 237 (785)
T TIGR02374 187 LLQRELEQKGLTFLLEKDTVEIVGA---TKADRIRFK-DGS--SLEAD-LIVMAAGIR 237 (785)
T ss_pred HHHHHHHHcCCEEEeCCceEEEEcC---CceEEEEEC-CCC--EEEcC-EEEECCCCC
Confidence 3444556789999999999998643 457777765 443 57887 889999953
No 346
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.12 E-value=0.06 Score=50.91 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=31.8
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
.++|||+|.+|+-+|..|++. |.+|.|+|+++...
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~l 193 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKL-GSKVTVLDAASTIL 193 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCccC
Confidence 699999999999999999997 99999999987543
No 347
>KOG0399|consensus
Probab=94.12 E-value=0.068 Score=54.87 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=36.1
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEV 95 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~ 95 (310)
.-.-|-|||+|++|+.+|-.|-+. |+.|+|.||.+..++.
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~-gh~v~vyer~dr~ggl 1823 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKA-GHTVTVYERSDRVGGL 1823 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhc-CcEEEEEEecCCcCce
Confidence 457899999999999999999998 9999999999877653
No 348
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=94.04 E-value=0.07 Score=54.66 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=40.3
Q ss_pred hhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCc-hhhhh
Q psy17311 244 FLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRT-TTLSR 307 (310)
Q Consensus 244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s-~~ll~ 307 (310)
.+....++.|+++++++.|++|..+. .+....|.+. +|+ .+.++ .||+|+|+.. ..|++
T Consensus 192 ~l~~~L~~~GV~v~~~~~v~~I~~~~-~~~~~~v~~~-dG~--~i~~D-~Vv~A~G~rPn~~L~~ 251 (847)
T PRK14989 192 QLRRKIESMGVRVHTSKNTLEIVQEG-VEARKTMRFA-DGS--ELEVD-FIVFSTGIRPQDKLAT 251 (847)
T ss_pred HHHHHHHHCCCEEEcCCeEEEEEecC-CCceEEEEEC-CCC--EEEcC-EEEECCCcccCchHHh
Confidence 44455677899999999999997642 2445566654 443 57887 8899999432 33543
No 349
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=93.95 E-value=0.051 Score=50.32 Aligned_cols=44 Identities=18% Similarity=0.142 Sum_probs=30.9
Q ss_pred cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc
Q psy17311 249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS 299 (310)
Q Consensus 249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG 299 (310)
++..+.+|+++++|++|..+ ++++. |.+. +|+ ++.|+ .||+|..
T Consensus 219 ~~~~g~~i~l~~~V~~I~~~--~~~v~-v~~~-~g~--~~~ad-~VI~a~p 262 (450)
T PF01593_consen 219 AEELGGEIRLNTPVTRIERE--DGGVT-VTTE-DGE--TIEAD-AVISAVP 262 (450)
T ss_dssp HHHHGGGEESSEEEEEEEEE--SSEEE-EEET-TSS--EEEES-EEEE-S-
T ss_pred HhhcCceeecCCcceecccc--ccccc-cccc-cce--EEecc-eeeecCc
Confidence 44457799999999999999 66654 3333 443 67887 6888875
No 350
>KOG3851|consensus
Probab=93.89 E-value=0.06 Score=47.89 Aligned_cols=37 Identities=24% Similarity=0.479 Sum_probs=31.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhccCC-CeEEEEcCCC
Q psy17311 54 HREYDFIVIGGGSAGAVVASRLSEVAH-WSILLLEAGP 90 (310)
Q Consensus 54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g-~~VlllE~g~ 90 (310)
..+|.|+|||+|.+|+.+|.++.+.-+ -+|.+||-.+
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 468999999999999999999988423 3799999654
No 351
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.80 E-value=0.076 Score=50.52 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=29.6
Q ss_pred EEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
|.|||.|.+|+++|..|.+. |++|.+.|+...
T Consensus 3 v~viG~G~sG~s~a~~l~~~-G~~V~~~D~~~~ 34 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQ-GWEVVVSDRNDS 34 (459)
T ss_pred EEEEccCHHHHHHHHHHHHC-CCEEEEECCCCc
Confidence 79999999999999999998 999999998754
No 352
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.76 E-value=0.085 Score=50.42 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=32.0
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
.++|||+|..|+-+|..|++. |.+|.|||+++...
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~il 210 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRL-GSEVDVVEMFDQVI 210 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCCEEEEecCCCCC
Confidence 699999999999999999997 99999999987544
No 353
>PRK07846 mycothione reductase; Reviewed
Probab=93.73 E-value=0.08 Score=50.33 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=32.3
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
-.++|||+|..|+-+|..|++. |.+|.|+|+++...
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~ll 202 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSAL-GVRVTVVNRSGRLL 202 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCccc
Confidence 3799999999999999999997 99999999987543
No 354
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=93.68 E-value=0.15 Score=48.88 Aligned_cols=53 Identities=19% Similarity=0.079 Sum_probs=39.9
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEEC--CeEEEEEcCeEEEEeccC
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRH--GIKQTVLARREELEVISF 300 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~--g~~~~i~A~k~VIlaaG~ 300 (310)
|.+.+++.|++|+++++|++|+.+ ++++.||.+.++ +....+.|+ .||+++..
T Consensus 238 L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~~~~~~~~~~~~ad-~VI~~~~~ 292 (492)
T TIGR02733 238 LVEALKRDGGNLLTGQRVTAIHTK--GGRAGWVVVVDSRKQEDLNVKAD-DVVANLPP 292 (492)
T ss_pred HHHHHHhcCCEEeCCceEEEEEEe--CCeEEEEEEecCCCCceEEEECC-EEEECCCH
Confidence 444556689999999999999998 788899987643 222467887 68887753
No 355
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.67 E-value=0.073 Score=47.87 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.|.|||+|..|...|..|+++ |++|.++|+.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~-G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARA-GHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC-CCeeEEEeCCH
Confidence 589999999999999999998 99999999874
No 356
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.60 E-value=0.087 Score=50.44 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.++|||+|.+|+.+|..|++. |.+|.++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~-G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLEL-GARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 699999999999999999997 99999999764
No 357
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.60 E-value=0.089 Score=47.41 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-.+.|||+|..|+..|.+|+++ |.+|.++.++.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence 3699999999999999999997 99999999875
No 358
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=93.59 E-value=0.099 Score=43.49 Aligned_cols=33 Identities=27% Similarity=0.490 Sum_probs=28.0
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-.|+|||+|..+.-+|..|++. |.+|.++=|.+
T Consensus 168 k~V~VVG~G~SA~d~a~~l~~~-g~~V~~~~R~~ 200 (203)
T PF13738_consen 168 KRVVVVGGGNSAVDIAYALAKA-GKSVTLVTRSP 200 (203)
T ss_dssp SEEEEE--SHHHHHHHHHHTTT-CSEEEEEESS-
T ss_pred CcEEEEcChHHHHHHHHHHHhh-CCEEEEEecCC
Confidence 4799999999999999999998 89999998875
No 359
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.47 E-value=0.099 Score=43.33 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=25.4
Q ss_pred EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
|.|||.|-.|+++|..||+. |++|+-+|..+
T Consensus 3 I~ViGlGyvGl~~A~~lA~~-G~~V~g~D~~~ 33 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEK-GHQVIGVDIDE 33 (185)
T ss_dssp EEEE--STTHHHHHHHHHHT-TSEEEEE-S-H
T ss_pred EEEECCCcchHHHHHHHHhC-CCEEEEEeCCh
Confidence 78999999999999999998 99999999864
No 360
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=93.24 E-value=0.13 Score=48.65 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=33.2
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
.++|||+|..|+-.|.-+++. |.+|+|||+++..-+
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~L-G~~VTiie~~~~iLp 210 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAAL-GSKVTVVERGDRILP 210 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCCC
Confidence 499999999999999999998 999999999987655
No 361
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=93.17 E-value=0.11 Score=48.94 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=31.2
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE 92 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~ 92 (310)
.++|||+|.+|+-+|..|++. |.+|.++++++..
T Consensus 139 ~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~ 172 (427)
T TIGR03385 139 NVVIIGGGYIGIEMAEALRER-GKNVTLIHRSERI 172 (427)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCccc
Confidence 799999999999999999997 9999999998754
No 362
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.16 E-value=0.1 Score=46.57 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=28.1
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEA 88 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~ 88 (310)
.+.|||+|..|+..|..|+++ |.+|.++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-GRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-CCceEEEec
Confidence 378999999999999999997 999999988
No 363
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.12 E-value=0.11 Score=46.24 Aligned_cols=30 Identities=17% Similarity=0.460 Sum_probs=28.2
Q ss_pred EEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
+.|||+|..|...|..|++. |.+|.++++.
T Consensus 3 I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r~ 32 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQA-GHDVTLVARR 32 (304)
T ss_pred EEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence 78999999999999999997 9999999983
No 364
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=93.09 E-value=0.11 Score=49.14 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=31.2
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE 92 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~ 92 (310)
.++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~~l 183 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYER-GLHPTLIHRSDKI 183 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEeccccc
Confidence 699999999999999999997 9999999998753
No 365
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=93.00 E-value=0.94 Score=47.53 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=34.8
Q ss_pred CCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE----------------CCeEEEEEcCeEEEEeccCC
Q psy17311 250 KRKNLHIAMRAHVTKILVNPATKKAYGVQFIR----------------HGIKQTVLARREELEVISFR 301 (310)
Q Consensus 250 ~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~----------------~g~~~~i~A~k~VIlaaG~~ 301 (310)
++.|+++++++.+++|..++ +|+++||++.+ ++....+.++ .||+|.|+.
T Consensus 620 ~eeGI~~~~~~~p~~i~~~~-~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D-~Vi~AiG~~ 685 (1006)
T PRK12775 620 KEEGIDFFFLHSPVEIYVDA-EGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECD-TVIYALGTK 685 (1006)
T ss_pred HhCCCEEEecCCcEEEEeCC-CCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcC-EEEECCCcC
Confidence 34578888888888886543 67788887642 2334578997 889999953
No 366
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.95 E-value=0.13 Score=48.84 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-.++|||+|.+|+.+|..|++. |++|.++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~-G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKL-GAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 4689999999999999999998 99999999864
No 367
>KOG3923|consensus
Probab=92.94 E-value=0.13 Score=45.24 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=29.2
Q ss_pred cccEEEECCChhHHHHHHHHhcc------CCCeEEEEcCCCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEV------AHWSILLLEAGPDEN 93 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~------~g~~VlllE~g~~~~ 93 (310)
..+++|||+|..||++|..+.+. |..+|.+++--..+.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~ 46 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTED 46 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccc
Confidence 35899999999999999777662 346888887555444
No 368
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.93 E-value=0.17 Score=38.16 Aligned_cols=31 Identities=26% Similarity=0.547 Sum_probs=27.8
Q ss_pred EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
|||||.|..|..+|..|.+. +.+|+++|+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhC-CCEEEEEECCc
Confidence 79999999999999999995 88999999875
No 369
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=92.81 E-value=0.13 Score=48.88 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=31.9
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
.++|||+|..|+-+|..|++. |.+|.|+|+++...
T Consensus 177 ~v~IiGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l 211 (461)
T PRK05249 177 SLIIYGAGVIGCEYASIFAAL-GVKVTLINTRDRLL 211 (461)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCcC
Confidence 699999999999999999997 99999999987543
No 370
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.73 E-value=0.14 Score=45.58 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-|.|||+|..|...|..|+++ |.+|.++|+.+
T Consensus 5 kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 589999999999999999997 99999999764
No 371
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=92.72 E-value=0.28 Score=46.57 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=37.1
Q ss_pred ccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEEC-C-eEEEEEcCeEEEEecc
Q psy17311 248 VRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRH-G-IKQTVLARREELEVIS 299 (310)
Q Consensus 248 ~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~-g-~~~~i~A~k~VIlaaG 299 (310)
.+++.|++|++++.|++|..++ +++++||++.++ + +.+++.++ .||+|..
T Consensus 222 ~l~~~g~~i~l~~~V~~I~~~~-~~~v~~v~~~~~~~~~~~~~~a~-~VI~a~p 273 (453)
T TIGR02731 222 YITSRGGEVRLNSRLKEIVLNE-DGSVKHFVLADGEGQRRFEVTAD-AYVSAMP 273 (453)
T ss_pred HHHhcCCEEeCCCeeEEEEECC-CCCEEEEEEecCCCCceeEEECC-EEEEcCC
Confidence 3455799999999999998753 677999998643 2 22357886 6888775
No 372
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=92.70 E-value=0.14 Score=48.71 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=31.8
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
.++|||+|..|+-+|..|++. |.+|.|+|+++...
T Consensus 171 ~v~VIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l 205 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSRL-GVKVTVFERGDRIL 205 (460)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCcC
Confidence 699999999999999999997 99999999987543
No 373
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.70 E-value=0.12 Score=45.89 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.|.|||+|..|...|..|+++ |++|+++|+.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC-CCcEEEEeCCH
Confidence 489999999999999999998 99999999864
No 374
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=92.62 E-value=0.15 Score=48.56 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=31.8
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE 92 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~ 92 (310)
-.++|||+|..|+-.|..|++. |.+|.|+|+++..
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~l 204 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSAL-GTRVTIVNRSTKL 204 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCcc
Confidence 3799999999999999999997 9999999998754
No 375
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.49 E-value=0.15 Score=46.01 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-|.|||+|..|...|..++.. |++|++.|..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAH-GLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 488999999999999999997 99999999764
No 376
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.43 E-value=0.19 Score=39.24 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=29.5
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCe-EEEEcCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWS-ILLLEAG 89 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~-VlllE~g 89 (310)
.--++|||+|.+|-.++..|++. |.+ |.|+-|.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence 45899999999999999999998 765 9999875
No 377
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=92.39 E-value=0.23 Score=47.76 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=32.6
Q ss_pred EEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
|||||||++|+++|.+|+++ |++|+||||.+..++
T Consensus 1 vvVIGaG~~GL~aA~~La~~-G~~V~VlE~~~~~GG 35 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAA-GIPVTVVEQRDKPGG 35 (502)
T ss_pred CEEECcCHHHHHHHHHHHhC-CCcEEEEECCCCCcC
Confidence 69999999999999999998 999999999987665
No 378
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.30 E-value=0.16 Score=45.25 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
-|-|||+|..|...|..++.+ |++|+++|+.+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHH
Confidence 588999999999999999998 999999998754
No 379
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=92.12 E-value=0.18 Score=47.85 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=31.2
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE 92 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~ 92 (310)
.++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~ 201 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGL-GVQVTLIYRGELI 201 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEEeCCCC
Confidence 599999999999999999997 9999999998754
No 380
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.87 E-value=0.24 Score=41.70 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=29.0
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
--++|||+|-.|...|..|.+. |.+|+|+++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~-ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKY-GAHIVVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEcCC
Confidence 4899999999999999999997 8999999753
No 381
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=91.86 E-value=0.24 Score=47.24 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=32.0
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE 94 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~ 94 (310)
.++|||+|..|+-+|..|++. |.+|.++|+++...+
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~-g~~Vtli~~~~~~l~ 214 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTEL-GVKVTLVSSRDRVLP 214 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcCCC
Confidence 689999999999999999997 999999999875443
No 382
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.85 E-value=0.21 Score=46.17 Aligned_cols=33 Identities=27% Similarity=0.529 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
+++|||+|..|.++|..|+++...+|++.+|..
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 699999999999999999998338999999973
No 383
>PLN02507 glutathione reductase
Probab=91.85 E-value=0.21 Score=48.15 Aligned_cols=34 Identities=21% Similarity=0.156 Sum_probs=31.3
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE 92 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~ 92 (310)
.++|||+|..|+-.|..|++. |.+|.|+|+++..
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~~ 238 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGM-GATVDLFFRKELP 238 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEEecCCc
Confidence 699999999999999999997 9999999998754
No 384
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=91.82 E-value=0.25 Score=41.51 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=31.0
Q ss_pred cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD 91 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~ 91 (310)
...|.|||+|..|+.+|..|++. |. ++.|+|....
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D~v 56 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARA-GIGKLILVDFDVV 56 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCCEE
Confidence 46899999999999999999997 87 6999998743
No 385
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=91.81 E-value=0.14 Score=47.67 Aligned_cols=39 Identities=31% Similarity=0.586 Sum_probs=31.9
Q ss_pred cccEEEECCChhHHHHHHHHhccC------------CCeEEEEcCCCCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVA------------HWSILLLEAGPDENE 94 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~------------g~~VlllE~g~~~~~ 94 (310)
.-+|+|||||..|.-.|.+|++.- ..+|.|+|+++..-+
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp 205 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP 205 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc
Confidence 358999999999999999998721 139999999986543
No 386
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=91.78 E-value=0.2 Score=49.00 Aligned_cols=33 Identities=36% Similarity=0.467 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
.++|||+|..|+-+|..|++. |.+|.|+++++.
T Consensus 145 ~VvVIGgG~~g~E~A~~L~~~-g~~Vtli~~~~~ 177 (555)
T TIGR03143 145 DVFVIGGGFAAAEEAVFLTRY-ASKVTVIVREPD 177 (555)
T ss_pred EEEEECCCHHHHHHHHHHHcc-CCEEEEEEeCCc
Confidence 699999999999999999997 999999999864
No 387
>PRK04148 hypothetical protein; Provisional
Probab=91.77 E-value=0.18 Score=39.35 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=29.1
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
-.+++||.| .|..+|..|++. |.+|+.+|..+.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~-G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES-GFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC-CCEEEEEECCHH
Confidence 359999999 888889999997 999999998763
No 388
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=91.76 E-value=0.21 Score=49.71 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=31.9
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
.++|||+|..|+-.|..|++. |.+|.|+|+++...
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~-G~eVTLIe~~~~ll 348 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTAL-GSEVVSFEYSPQLL 348 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhC-CCeEEEEeccCccc
Confidence 699999999999999999997 99999999987544
No 389
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.69 E-value=0.21 Score=45.48 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.+.|||+|..|...|.+|+++ |++|.++++..
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~-G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAA-GADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCcEEEEecHH
Confidence 489999999999999999998 99999999853
No 390
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.64 E-value=0.22 Score=45.09 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=28.8
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
.+.|||+|..|...|..|+++ |++|.++.+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-KISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-CCeEEEEecC
Confidence 378999999999999999998 9999999984
No 391
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=91.63 E-value=0.28 Score=39.46 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=27.7
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEc
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLE 87 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE 87 (310)
-.++|||+|-.|.--|..|.+. |.+|+|+.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~-ga~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDT-GAFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEc
Confidence 4799999999999999999997 99999994
No 392
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.55 E-value=0.24 Score=44.13 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.|.|||+|..|...|..|+++ |.+|.+.|+.+
T Consensus 6 kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 589999999999999999998 99999999764
No 393
>PTZ00058 glutathione reductase; Provisional
Probab=91.52 E-value=0.21 Score=48.78 Aligned_cols=35 Identities=9% Similarity=0.098 Sum_probs=31.7
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
.++|||+|..|+-.|..|++. |.+|.|+|+++...
T Consensus 239 ~VvIIGgG~iGlE~A~~l~~~-G~~Vtli~~~~~il 273 (561)
T PTZ00058 239 RIGIAGSGYIAVELINVVNRL-GAESYIFARGNRLL 273 (561)
T ss_pred EEEEECCcHHHHHHHHHHHHc-CCcEEEEEeccccc
Confidence 699999999999999999997 99999999987543
No 394
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=91.51 E-value=0.37 Score=46.17 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=40.9
Q ss_pred cccCCCCcEEecCcEEEEEEEcCC--CC-eEEEEEEEECCeEEEEEcCeEEEEecc-CCchhhhhh
Q psy17311 247 PVRKRKNLHIAMRAHVTKILVNPA--TK-KAYGVQFIRHGIKQTVLARREELEVIS-FRTTTLSRD 308 (310)
Q Consensus 247 ~~~~~~g~~v~~~~~V~~I~~~~~--~~-~v~GV~~~~~g~~~~i~A~k~VIlaaG-~~s~~ll~~ 308 (310)
+..++.|++|+++++|++|..+.. +. +++||++.+++....+.++ .||+|.. ..+.+|+.+
T Consensus 227 ~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD-~VVlA~p~~~~~~Ll~~ 291 (474)
T TIGR02732 227 EYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKAD-AYVAACDVPGIKRLLPQ 291 (474)
T ss_pred HHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECC-EEEECCChHHHHhhCCh
Confidence 334568999999999999998631 12 4888888533211347787 6888876 455555543
No 395
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=91.47 E-value=0.22 Score=48.22 Aligned_cols=33 Identities=33% Similarity=0.554 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
+|+|||+|..|+-+|..|+.. +.+|.|+++++.
T Consensus 353 ~VvVVGgG~~g~e~A~~L~~~-~~~Vtlv~~~~~ 385 (517)
T PRK15317 353 RVAVIGGGNSGVEAAIDLAGI-VKHVTVLEFAPE 385 (517)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCEEEEEEECcc
Confidence 799999999999999999997 899999998864
No 396
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=91.30 E-value=0.3 Score=46.16 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=31.7
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
.++|||+|..|+-.|..|++. |.+|.|+|+++...
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l 194 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANF-GSKVTILEAASLFL 194 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence 699999999999999999997 99999999986543
No 397
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=91.29 E-value=0.23 Score=36.80 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=29.3
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
.-.++|||+|..|..-+..|.+. |.+|+|+...
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~-gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEA-GAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCC-TBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCc
Confidence 35799999999999999999997 9999999865
No 398
>PRK13748 putative mercuric reductase; Provisional
Probab=91.24 E-value=0.25 Score=48.25 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.++|||+|..|+-+|..|++. |.+|.|+++..
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~ 303 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARL-GSKVTILARST 303 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEecCc
Confidence 699999999999999999997 99999999864
No 399
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.22 E-value=0.28 Score=44.76 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=31.5
Q ss_pred cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD 91 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~ 91 (310)
...|+|||+|..|+.+|..|++. |. ++.++|....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~V 59 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDYV 59 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCcc
Confidence 56899999999999999999998 77 8999998753
No 400
>PLN02546 glutathione reductase
Probab=91.12 E-value=0.26 Score=48.14 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=31.2
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE 92 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~ 92 (310)
+++|||+|..|+-.|..|++. |.+|.|+|+++..
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~-g~~Vtlv~~~~~i 287 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGL-KSDVHVFIRQKKV 287 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCeEEEEEecccc
Confidence 799999999999999999997 9999999998753
No 401
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=91.07 E-value=3 Score=37.44 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=36.9
Q ss_pred CCCcEEecCcEEEEEEEcCCCCeEEEEEEEEC-CeEEEEEcCeEEEEeccC-Cchhhh
Q psy17311 251 RKNLHIAMRAHVTKILVNPATKKAYGVQFIRH-GIKQTVLARREELEVISF-RTTTLS 306 (310)
Q Consensus 251 ~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~-g~~~~i~A~k~VIlaaG~-~s~~ll 306 (310)
+.++.+++++.+++|.-+ + +.+|.+.+. +....+..+ .|.++-|. ....++
T Consensus 191 ~~~i~~~~~~~i~ei~G~--~--v~~v~l~~~~~~~~~~~~~-gvf~~iG~~p~~~~~ 243 (305)
T COG0492 191 NVKIEVLTNTVVKEILGD--D--VEGVVLKNVKGEEKELPVD-GVFIAIGHLPNTELL 243 (305)
T ss_pred cCCeEEEeCCceeEEecC--c--cceEEEEecCCceEEEEec-eEEEecCCCCchHHH
Confidence 348999999999999766 4 888988864 666677776 77777773 333444
No 402
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=90.88 E-value=0.34 Score=40.84 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=29.1
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
--++|||+|..|..-|..|.+. |.+|+|+...
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~-ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA-GAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 3799999999999999999997 9999999754
No 403
>PLN02487 zeta-carotene desaturase
Probab=90.85 E-value=0.4 Score=46.90 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=41.3
Q ss_pred cccCCCCcEEecCcEEEEEEEcCC-CC--eEEEEEEEECCeEEEEEcCeEEEEeccCC-chhhh
Q psy17311 247 PVRKRKNLHIAMRAHVTKILVNPA-TK--KAYGVQFIRHGIKQTVLARREELEVISFR-TTTLS 306 (310)
Q Consensus 247 ~~~~~~g~~v~~~~~V~~I~~~~~-~~--~v~GV~~~~~g~~~~i~A~k~VIlaaG~~-s~~ll 306 (310)
+..++.|++|++++.|++|+.+.+ ++ +++||++.+++....+.++ .||++.+.+ ..+|+
T Consensus 303 ~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD-~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 303 KYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKAD-AYVAACDVPGIKRLL 365 (569)
T ss_pred HHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECC-EEEECCCHHHHHHhC
Confidence 345778999999999999999732 22 5899988533333357786 788888844 34443
No 404
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.82 E-value=0.31 Score=42.80 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=31.6
Q ss_pred cccEEEECCChhHHHHHHHHhccCC-CeEEEEcCCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAH-WSILLLEAGPDE 92 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g-~~VlllE~g~~~ 92 (310)
..-|+|||.|..|+.+|..|++. | .++.|+|.....
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D~V~ 66 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALART-GIGAITLIDMDDVC 66 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCEec
Confidence 46899999999999999999997 7 689999976543
No 405
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.81 E-value=0.31 Score=43.38 Aligned_cols=32 Identities=16% Similarity=0.362 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.|.|||+|..|...|..|+.+ |.+|.++|+.+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFART-GYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 488999999999999999997 99999999864
No 406
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.69 E-value=0.34 Score=44.20 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=31.6
Q ss_pred cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPDE 92 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~~ 92 (310)
+.-|+|||+|..|+.+|..|++. |. ++.|+|....+
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ve 60 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDYVE 60 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCccc
Confidence 46799999999999999999998 76 89999987643
No 407
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=90.64 E-value=0.37 Score=40.44 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=28.9
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
-++|+|.|..|..+|.+|.+. |.+|++.|+.
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~-G~~Vvv~D~~ 60 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEE-GAKLIVADIN 60 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 599999999999999999998 9999999865
No 408
>PRK14727 putative mercuric reductase; Provisional
Probab=90.63 E-value=0.31 Score=46.67 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.++|||+|..|+-.|..|++. |.+|.|+++..
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~-G~~Vtlv~~~~ 221 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARL-GSRVTILARST 221 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEEcCC
Confidence 699999999999999999997 99999999853
No 409
>PRK14694 putative mercuric reductase; Provisional
Probab=90.51 E-value=0.33 Score=46.36 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.++|||+|..|+-+|..|++. |.+|.|++++.
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~-g~~Vtlv~~~~ 211 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARL-GSRVTVLARSR 211 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEECCC
Confidence 699999999999999999997 99999999753
No 410
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.41 E-value=0.38 Score=43.31 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=28.7
Q ss_pred cEEEECCChhHHHHHHHHhccCC--CeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAH--WSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g--~~VlllE~g~ 90 (310)
.+.|||+|..|+++|+.|++. | ..|.|+|+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~-g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR-GLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCCEEEEEECCc
Confidence 489999999999999999997 7 5799999864
No 411
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.32 E-value=0.35 Score=44.69 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.+++|||+|.+|..+|..|... |.+|.++++..
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~ 200 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGL-GATVTILDINI 200 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence 5699999999999999999997 88999999753
No 412
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.23 E-value=0.32 Score=43.11 Aligned_cols=32 Identities=19% Similarity=0.394 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.|.|||+|..|...|..|++. |.+|+++|..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-CCceEEEeCCH
Confidence 589999999999999999998 99999998654
No 413
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=90.21 E-value=0.34 Score=44.34 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=28.8
Q ss_pred cEEEECCChhHHHHHHHHhccCCCe-EEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWS-ILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~-VlllE~g~ 90 (310)
.++|||+|..|+-+|..|++. |.+ |.|+++.+
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~-g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLL-GAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCeEEEEeecc
Confidence 599999999999999999887 876 99999865
No 414
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=90.12 E-value=1.7 Score=42.57 Aligned_cols=34 Identities=15% Similarity=0.367 Sum_probs=31.3
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
+-.+||+|.|..|-.+|.+|.++ |.+|+++|+.+
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~-g~~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAA-GIPLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHC-CCCEEEEECCH
Confidence 46899999999999999999997 99999999875
No 415
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.11 E-value=0.45 Score=43.16 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.+.|||+|..|...|.+|+++ |++|.++++.+
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~-G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASK-GVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 589999999999999999998 99999999853
No 416
>PTZ00052 thioredoxin reductase; Provisional
Probab=90.08 E-value=0.34 Score=46.69 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
.++|||+|..|+-+|..|++. |.+|.|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNEL-GFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEEcC
Confidence 799999999999999999998 9999999974
No 417
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=90.07 E-value=0.39 Score=43.12 Aligned_cols=31 Identities=39% Similarity=0.546 Sum_probs=27.8
Q ss_pred cEEEECCChhHHHHHHHHhccCCC-eEEEEcCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHW-SILLLEAG 89 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g 89 (310)
-+.|||+|..|+.+|+-|+.. |. +|+|+|.-
T Consensus 3 KV~VIGaG~vG~~iA~~la~~-g~~~VvlvDi~ 34 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEK-ELADLVLLDVV 34 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 488999999999999999997 65 89999984
No 418
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=90.07 E-value=0.35 Score=43.55 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.|.|||+|..|...|..|+++ |++|.++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-GHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence 589999999999999999997 99999999863
No 419
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=90.01 E-value=0.47 Score=37.32 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=28.7
Q ss_pred EEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311 59 FIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD 91 (310)
Q Consensus 59 vIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~ 91 (310)
|+|||.|..|+.+|..|++. |. ++.++|....
T Consensus 2 VliiG~GglGs~ia~~L~~~-Gv~~i~ivD~d~v 34 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARS-GVGKITLIDFDTV 34 (143)
T ss_pred EEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCCc
Confidence 78999999999999999997 76 7999997754
No 420
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=89.96 E-value=0.39 Score=42.81 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=28.5
Q ss_pred cEEEECCChhHHHHHHHHhccCCCe-EEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWS-ILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~-VlllE~g~ 90 (310)
-++|+|+|.+|.++|..|++. |.+ |.++.|..
T Consensus 128 ~vlI~GAGGagrAia~~La~~-G~~~V~I~~R~~ 160 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALD-GAKEITIFNIKD 160 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCc
Confidence 589999999999999999998 875 99998864
No 421
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=89.96 E-value=0.41 Score=45.09 Aligned_cols=35 Identities=34% Similarity=0.718 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhcc-------------CCCeEEEEcCCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEV-------------AHWSILLLEAGPDE 92 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~-------------~g~~VlllE~g~~~ 92 (310)
.++|||+|..|+-.|..|++. ++.+|.|+|+++..
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 799999999999999999861 37899999998654
No 422
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=89.94 E-value=0.38 Score=41.22 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=29.5
Q ss_pred ccEEEECCChhHHHHHHHHhccCCC---eEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHW---SILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~---~VlllE~g~ 90 (310)
-.++|+|+|.+|..+|..|.+. |. +|.++++.+
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAA-GAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHc-CcCcceEEEEeCCC
Confidence 3699999999999999999997 76 599999975
No 423
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=89.79 E-value=0.44 Score=42.34 Aligned_cols=33 Identities=27% Similarity=0.489 Sum_probs=29.2
Q ss_pred ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~ 90 (310)
-.++|||+|.+|.++|+.|++. |. +|.|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~-G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL-GVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCEEEEECCCH
Confidence 4699999999999999999997 75 799999864
No 424
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.74 E-value=0.48 Score=38.80 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=28.6
Q ss_pred EEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311 59 FIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD 91 (310)
Q Consensus 59 vIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~ 91 (310)
|+|||+|..|+.+|..|++. |. ++.|+|....
T Consensus 2 VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~v 34 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDVV 34 (174)
T ss_pred EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCEE
Confidence 78999999999999999997 77 5999998753
No 425
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=89.62 E-value=0.38 Score=43.28 Aligned_cols=31 Identities=23% Similarity=0.568 Sum_probs=28.3
Q ss_pred EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
+.|+|+|..|+..|++|++. |..|+++=|.+
T Consensus 3 I~IlGaGAvG~l~g~~L~~~-g~~V~~~~R~~ 33 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKA-GHDVTLLVRSR 33 (307)
T ss_pred EEEECCcHHHHHHHHHHHhC-CCeEEEEecHH
Confidence 78999999999999999998 78899888776
No 426
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=89.59 E-value=0.53 Score=38.26 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=28.4
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.-|+|+|+|.+|..||.-|... |.+|.++|...
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCH
Confidence 6899999999999999999998 99999999753
No 427
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.43 E-value=0.44 Score=45.14 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-++|+|+|..|+++|..|++. |.+|++.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~-G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKL-GANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 489999999999999999997 99999999764
No 428
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=89.39 E-value=0.61 Score=37.99 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=29.5
Q ss_pred cccEEEECCCh-hHHHHHHHHhccCCCeEEEEcCC
Q psy17311 56 EYDFIVIGGGS-AGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 56 ~~DvIVVGaG~-aG~~aA~~Lae~~g~~VlllE~g 89 (310)
...++|||+|- +|..+|..|.+. |.+|.++.+.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhC-CCEEEEEECC
Confidence 57999999996 699999999997 8899999986
No 429
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=89.27 E-value=0.54 Score=42.25 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=28.8
Q ss_pred cEEEECCChhHHHHHHHHhccCC--CeEEEEcCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAH--WSILLLEAGPD 91 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g--~~VlllE~g~~ 91 (310)
-|.|||+|.+|.++|+.|++. | ..|.|+|+...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~-g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQ-GIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCcc
Confidence 379999999999999999997 7 47999998653
No 430
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.21 E-value=0.51 Score=44.18 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-.|+|+|.|..|+.+|..|... |.+|+++|..+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCh
Confidence 4799999999999999999887 89999999765
No 431
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=89.18 E-value=0.57 Score=39.37 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=31.6
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD 91 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~ 91 (310)
.+.-|+|||.|..|+.+|..|++. |. ++.|+|....
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d~v 56 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDDHV 56 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCEE
Confidence 357899999999999999999998 75 8999998754
No 432
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.00 E-value=0.69 Score=35.99 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=29.5
Q ss_pred ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD 91 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~ 91 (310)
.-|+|||+|..|+.+|..|++. |. ++.|+|....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~-Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS-GVGKITLVDDDIV 37 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH-TTSEEEEEESSBB
T ss_pred CEEEEECcCHHHHHHHHHHHHh-CCCceeecCCcce
Confidence 4689999999999999999998 76 7999998754
No 433
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=88.99 E-value=0.8 Score=32.60 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=28.6
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEA 88 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~ 88 (310)
-.++|+|+|..|..+|..|.+..+.+|.+.++
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 46999999999999999999974678999988
No 434
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.94 E-value=0.58 Score=42.03 Aligned_cols=32 Identities=19% Similarity=0.461 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.|.|||+|..|...|..|++. |++|.++|+..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARK-GLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence 589999999999999999997 99999999753
No 435
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=88.93 E-value=0.52 Score=36.95 Aligned_cols=31 Identities=13% Similarity=0.437 Sum_probs=26.5
Q ss_pred EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
++|+|+|..+..+|.-+... |++|+|+|-.+
T Consensus 1 L~I~GaG~va~al~~la~~l-g~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL-GFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC-TEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhC-CCEEEEEcCCc
Confidence 58999999999999999887 99999999764
No 436
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=88.72 E-value=0.49 Score=44.39 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.|-|||.|..|+..|..|++. |++|+++++.+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-GHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-CCeEEEEECCH
Confidence 378999999999999999997 99999999864
No 437
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=88.60 E-value=0.54 Score=41.93 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-|.|||+|..|...|..|+.. |.+|.+.|+.+
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~-G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAA-GMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 488999999999999999997 99999999764
No 438
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=88.33 E-value=0.57 Score=43.09 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.+-|||+|-.|++.|.-||+. |++|+.+|..+
T Consensus 2 kI~viGtGYVGLv~g~~lA~~-GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAEL-GHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHc-CCeEEEEeCCH
Confidence 478999999999999999998 99999999864
No 439
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=88.03 E-value=0.56 Score=45.21 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-|-|||+|..|...|..|+++ |++|.|.|+.+
T Consensus 7 kV~VIGaG~MG~gIA~~la~a-G~~V~l~d~~~ 38 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASA-GHQVLLYDIRA 38 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 489999999999999999998 99999999864
No 440
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=88.02 E-value=0.59 Score=43.94 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-|.|||.|..|++.|..|++. |++|.++|+.+
T Consensus 5 kI~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~ 36 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASR-QKQVIGVDINQ 36 (415)
T ss_pred EEEEECcchhhHHHHHHHHhC-CCEEEEEeCCH
Confidence 489999999999999999998 99999999754
No 441
>PRK07208 hypothetical protein; Provisional
Probab=88.01 E-value=1.5 Score=41.87 Aligned_cols=54 Identities=13% Similarity=0.107 Sum_probs=37.1
Q ss_pred hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEeccC
Q psy17311 245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVISF 300 (310)
Q Consensus 245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaaG~ 300 (310)
|...+++.|++|+++++|++|..++ ++.+.++.... +|....+.|+ .||+|...
T Consensus 224 L~~~l~~~g~~i~~~~~V~~I~~~~-~~~v~~~~~~~~~g~~~~~~ad-~VI~a~p~ 278 (479)
T PRK07208 224 AAEKLEALGGKVVLNAKVVGLHHDG-DGRIAVVVVNDTDGTEETVTAD-QVISSMPL 278 (479)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEEcC-CcEEEEEEEEcCCCCEEEEEcC-EEEECCCH
Confidence 3344556789999999999999983 34455555543 4554568886 67877653
No 442
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=87.88 E-value=0.73 Score=39.16 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=28.2
Q ss_pred cEEEEC-CChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIG-GGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVG-aG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.+.||| +|..|.+.|..|++. |++|.+..+.+
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-GNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-CCEEEEEEcCH
Confidence 378997 799999999999997 89999998764
No 443
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.87 E-value=0.72 Score=41.44 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
.|.|||+|..|...|.+|+++ |++|.+.++...
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~-G~~V~~~~r~~~ 38 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASAN-GHRVRVWSRRSG 38 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence 589999999999999999998 999999998653
No 444
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=87.79 E-value=0.81 Score=41.43 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD 91 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~ 91 (310)
.-+.|||+|..|..+|+.++.. |. +|.|+|..+.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~-gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK-NLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCCc
Confidence 4799999999999999999986 75 8999998654
No 445
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=87.71 E-value=0.67 Score=45.01 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=28.5
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
-++|+|+|.+|.++|+.|++. |.+|.++.|.
T Consensus 381 ~vlIlGaGGagrAia~~L~~~-G~~V~i~nR~ 411 (529)
T PLN02520 381 LFVVIGAGGAGKALAYGAKEK-GARVVIANRT 411 (529)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 589999999999999999998 8899999874
No 446
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=87.67 E-value=0.67 Score=41.49 Aligned_cols=31 Identities=29% Similarity=0.474 Sum_probs=27.6
Q ss_pred EEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311 59 FIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP 90 (310)
Q Consensus 59 vIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~ 90 (310)
|.|||+|..|..+|..|+.. +. +|.|+|..+
T Consensus 1 I~IIGaG~vG~~ia~~la~~-~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK-ELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC-CCcEEEEEeCCC
Confidence 57999999999999999986 66 999999874
No 447
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=87.41 E-value=0.73 Score=43.70 Aligned_cols=33 Identities=33% Similarity=0.519 Sum_probs=31.0
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
+|+|||+|..|.-.|.+|++. |.+|.|+=|.+.
T Consensus 177 rV~VIG~GaSA~di~~~l~~~-ga~vt~~qRs~~ 209 (443)
T COG2072 177 RVLVIGAGASAVDIAPELAEV-GASVTLSQRSPP 209 (443)
T ss_pred eEEEECCCccHHHHHHHHHhc-CCeeEEEecCCC
Confidence 899999999999999999998 899999998864
No 448
>PLN02612 phytoene desaturase
Probab=87.26 E-value=1.1 Score=44.06 Aligned_cols=46 Identities=11% Similarity=0.088 Sum_probs=35.2
Q ss_pred cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc
Q psy17311 249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS 299 (310)
Q Consensus 249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG 299 (310)
.++.|++|+++++|++|..++ ++++.+|++. +|+ .+.++ .||+|..
T Consensus 318 l~~~G~~I~l~~~V~~I~~~~-~g~v~~v~~~-~G~--~~~ad-~VI~a~p 363 (567)
T PLN02612 318 FQSLGGEVRLNSRIKKIELND-DGTVKHFLLT-NGS--VVEGD-VYVSATP 363 (567)
T ss_pred HHhcCCEEEeCCeeeEEEECC-CCcEEEEEEC-CCc--EEECC-EEEECCC
Confidence 345799999999999999864 5677888775 453 47787 6777765
No 449
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=87.19 E-value=0.65 Score=41.33 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=30.9
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.-+|+|||+|.+|.-+|.-+.-. |.+|.+||...
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~ 201 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNI 201 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCH
Confidence 46999999999999999999887 99999999874
No 450
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=87.16 E-value=0.87 Score=38.59 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=30.8
Q ss_pred cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD 91 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~ 91 (310)
..-|+|||+|..|+.+|..|++. |. ++.|+|....
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D~v 63 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFDVV 63 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCEe
Confidence 56899999999999999999997 76 5999998753
No 451
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=87.03 E-value=0.73 Score=44.39 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.|-|||+|..|...|..|+.+ |++|+|.|+.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~-G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLA-GIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 488999999999999999998 99999998753
No 452
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=86.99 E-value=0.72 Score=46.52 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-|.|||+|..|...|..++.+ |++|.|+|..+
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~ 346 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASK-GVPVIMKDINQ 346 (715)
T ss_pred eEEEECCchhHHHHHHHHHhC-CCeEEEEeCCH
Confidence 589999999999999999998 99999999875
No 453
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=86.72 E-value=1.1 Score=38.77 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=31.7
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
...|+|||+|..|+.+|..|+..+-.++.++|......
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~ 61 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSL 61 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccc
Confidence 47899999999999999999998334799999876443
No 454
>PRK08328 hypothetical protein; Provisional
Probab=86.65 E-value=0.98 Score=38.81 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=30.2
Q ss_pred cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD 91 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~ 91 (310)
..-|+|||+|..|+.+|..|+.. |. ++.++|....
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~-Gvg~i~lvD~D~v 62 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAA-GVGRILLIDEQTP 62 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCcc
Confidence 46899999999999999999998 64 6899987654
No 455
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=86.63 E-value=0.88 Score=40.49 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-.++|||.|.+|..+|..|... |.+|.+.++..
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~-G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSAL-GARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 4799999999999999999997 89999999864
No 456
>PRK06223 malate dehydrogenase; Reviewed
Probab=86.60 E-value=0.92 Score=40.67 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=28.3
Q ss_pred cEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~ 90 (310)
.|.|||+|..|..+|..++.. |. .|.|+|...
T Consensus 4 KI~VIGaG~vG~~ia~~la~~-~~~ev~L~D~~~ 36 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALK-ELGDVVLFDIVE 36 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEEECCC
Confidence 689999999999999999986 54 899999843
No 457
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=86.50 E-value=0.75 Score=43.88 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
.|+|||+|..|+=+|..|++. +.+|.++.+++.
T Consensus 206 ~VvVVG~G~Sg~diA~~L~~~-a~~V~l~~r~~~ 238 (461)
T PLN02172 206 VVVVIGNFASGADISRDIAKV-AKEVHIASRASE 238 (461)
T ss_pred EEEEECCCcCHHHHHHHHHHh-CCeEEEEEeecc
Confidence 699999999999999999997 889999998753
No 458
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=86.42 E-value=0.88 Score=43.95 Aligned_cols=33 Identities=30% Similarity=0.474 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
-|-|||+|..|...|..|+.+ |+.|.|.|+.+.
T Consensus 9 ~V~VIGaG~MG~gIA~~la~a-G~~V~l~D~~~e 41 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQA-GHTVLLYDARAG 41 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 488999999999999999998 999999997653
No 459
>PRK08017 oxidoreductase; Provisional
Probab=86.38 E-value=0.99 Score=38.82 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=28.6
Q ss_pred cEEEECC-ChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGG-GSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-++|+|+ |..|..+|.+|++. |++|+++.+..
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~-g~~v~~~~r~~ 36 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRR-GYRVLAACRKP 36 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 3899998 99999999999997 99999998754
No 460
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=86.33 E-value=1 Score=38.94 Aligned_cols=38 Identities=16% Similarity=0.390 Sum_probs=31.4
Q ss_pred CcccEEEECCChhHHHHHHHHhccC----------CCeEEEEcCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVA----------HWSILLLEAGPDE 92 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~----------g~~VlllE~g~~~ 92 (310)
....|+|||+|..|+.++-.|++.+ |.++.|+|.....
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve 57 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVS 57 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEc
Confidence 4679999999999999999999851 3389999976543
No 461
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=86.27 E-value=1 Score=39.92 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=28.1
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-++|+|+|.++-++|+.|++.+-.+|.|+.|..
T Consensus 129 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 161 (283)
T PRK14027 129 SVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 589999999999999999997334799998753
No 462
>KOG2495|consensus
Probab=86.25 E-value=0.4 Score=44.45 Aligned_cols=36 Identities=31% Similarity=0.585 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHhc-------------cCCCeEEEEcCCCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSE-------------VAHWSILLLEAGPDE 92 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae-------------~~g~~VlllE~g~~~ 92 (310)
--+||||||+.|.-.|.+|+. ..-.+|+|+|+.+..
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i 267 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI 267 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH
Confidence 589999999999999999986 114589999999843
No 463
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=86.19 E-value=1 Score=42.09 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=30.5
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.-.|+|||.|..|..+|..|... |.+|+++|..+
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCCh
Confidence 34799999999999999999987 99999999765
No 464
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=86.12 E-value=0.86 Score=45.96 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-|.|||+|..|...|..++.+ |.+|.|+|..+
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~ 346 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASK-GTPIVMKDINQ 346 (714)
T ss_pred eEEEECCchHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 599999999999999999998 99999999764
No 465
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=86.11 E-value=2.7 Score=39.07 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=31.7
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCC---eEEEEcCCCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHW---SILLLEAGPDE 92 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~---~VlllE~g~~~ 92 (310)
.+..+|+.|+|.||+.+|..|... |. +|.++|+-+..
T Consensus 198 ~d~kiv~~GAGAAgiaia~~l~~~-g~~~~~i~~~D~~G~l 237 (432)
T COG0281 198 KDQKIVINGAGAAGIAIADLLVAA-GVKEENIFVVDRKGLL 237 (432)
T ss_pred cceEEEEeCCcHHHHHHHHHHHHh-CCCcccEEEEecCCcc
Confidence 367899999999999999999986 65 69999987643
No 466
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=86.09 E-value=1 Score=39.66 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=29.4
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-.++|+|+|.+|..+|..|++. |.+|.++.|..
T Consensus 118 k~vliiGaGg~g~aia~~L~~~-g~~v~v~~R~~ 150 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKA-DCNVIIANRTV 150 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 3689999999999999999997 88999998753
No 467
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=85.97 E-value=1.2 Score=36.96 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=28.5
Q ss_pred ccEEEECC-ChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 57 YDFIVIGG-GSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 57 ~DvIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
-.++|+|+ |..|..+|..|++. |.+|.++.|.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~-g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 47999996 99999999999997 8999999775
No 468
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.88 E-value=0.66 Score=41.98 Aligned_cols=35 Identities=34% Similarity=0.509 Sum_probs=30.0
Q ss_pred CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
+--||.|||+|..|.-+|+-||-. -..|+|||=.+
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGi-v~hVtllEF~~ 387 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAP 387 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhh-hheeeeeecch
Confidence 345999999999999999999986 56799999654
No 469
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.79 E-value=1.1 Score=42.52 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
-++|+|.|..|+++|..|++. |.+|.+.|..+.
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~-g~~v~~~d~~~~ 39 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKN-GAEVAAYDAELK 39 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence 589999999999999999998 999999997654
No 470
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=85.77 E-value=1.2 Score=39.40 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=28.6
Q ss_pred cEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~ 90 (310)
.++|+|+|.++.++++.|++. |. +|.|+.|..
T Consensus 124 ~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~~ 156 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDA-GFTDGTIVARNE 156 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCH
Confidence 699999999999999999997 64 699998864
No 471
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=85.58 E-value=1.1 Score=39.66 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=29.5
Q ss_pred ccEEEECCChhHHHHHHHHhccCC-CeEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAH-WSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g-~~VlllE~g~ 90 (310)
-.++|+|+|.+|..+|..|++. | .+|.|+.|..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~-g~~~V~v~~R~~ 157 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDL-GVAEITIVNRTV 157 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHc-CCCEEEEEeCCH
Confidence 4689999999999999999997 7 7899998864
No 472
>KOG2018|consensus
Probab=85.58 E-value=1 Score=40.07 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=27.0
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
=|||||+|..|+-++..|.+.+-.|+.++|=.
T Consensus 76 yVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfd 107 (430)
T KOG2018|consen 76 YVVVVGAGGVGSWVANMLLRSGVQKIRIVDFD 107 (430)
T ss_pred EEEEEecCchhHHHHHHHHHhcCceEEEechh
Confidence 38999999999999999999733578888754
No 473
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=85.55 E-value=0.97 Score=39.96 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=28.8
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.|.|||.|..|.+.|..|.++ |.+|.++++.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-CCEEEEEECCH
Confidence 378999999999999999997 89999999753
No 474
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=85.40 E-value=1.1 Score=36.20 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=26.6
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
--++|+|-|-.|..+|.+|... |.+|.|.|..|
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~-Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGL-GARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHT-T-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhC-CCEEEEEECCh
Confidence 3699999999999999999997 99999999875
No 475
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.35 E-value=0.92 Score=42.95 Aligned_cols=32 Identities=22% Similarity=0.477 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.++|||+|..|..+|..|.+. |.+|.++|+.+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~-g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGE-NNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEECCH
Confidence 489999999999999999997 99999999854
No 476
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=85.25 E-value=1.4 Score=38.21 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=30.9
Q ss_pred cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD 91 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~ 91 (310)
...|+|||.|..|+.+|..|+.. |. ++.|+|....
T Consensus 32 ~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D~v 67 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAA-GVGTLTLVDFDTV 67 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCEE
Confidence 57999999999999999999997 64 7999997754
No 477
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=85.18 E-value=1.4 Score=39.86 Aligned_cols=33 Identities=15% Similarity=0.390 Sum_probs=29.2
Q ss_pred ccEEEECCChhHHHHHHHHhccCCC--eEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHW--SILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~ 90 (310)
..+.|||+|..|.++|+.|+.. +. .++|+|...
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~-~~~~el~L~D~~~ 41 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQ-GIADELVIIDINK 41 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCC
Confidence 5899999999999999999987 66 799999854
No 478
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.15 E-value=1.2 Score=39.03 Aligned_cols=31 Identities=16% Similarity=0.148 Sum_probs=27.3
Q ss_pred cEEEECCC---hhHHHHHHHHhccCCCeEEEEcCC
Q psy17311 58 DFIVIGGG---SAGAVVASRLSEVAHWSILLLEAG 89 (310)
Q Consensus 58 DvIVVGaG---~aG~~aA~~Lae~~g~~VlllE~g 89 (310)
=++|.|++ ..|..+|.+|++. |++|++..+.
T Consensus 9 ~~lVTGas~~~GIG~aiA~~la~~-Ga~V~~~~r~ 42 (271)
T PRK06505 9 RGLIMGVANDHSIAWGIAKQLAAQ-GAELAFTYQG 42 (271)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHhC-CCEEEEecCc
Confidence 48899987 6999999999998 9999998764
No 479
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=84.96 E-value=1.3 Score=41.70 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=30.0
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
--++|||.|..|..+|..|... |.+|++.|..+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp 245 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDP 245 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCc
Confidence 3699999999999999999997 89999999765
No 480
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=84.83 E-value=1.3 Score=39.32 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=28.4
Q ss_pred ccEEEECCChhHHHHHHHHhccCC-CeEEEEcCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAH-WSILLLEAG 89 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g-~~VlllE~g 89 (310)
-.++|||+|.++-++|+.|++. | .+|.|+.|.
T Consensus 126 k~vlvlGaGGaarai~~aL~~~-G~~~i~I~nRt 158 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASL-GVTDITVINRN 158 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 4699999999999999999998 6 479999875
No 481
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=84.74 E-value=1.4 Score=31.77 Aligned_cols=31 Identities=23% Similarity=0.488 Sum_probs=27.3
Q ss_pred EEEECCChhHHHHHHHHhccCC---CeEEEE-cCCC
Q psy17311 59 FIVIGGGSAGAVVASRLSEVAH---WSILLL-EAGP 90 (310)
Q Consensus 59 vIVVGaG~aG~~aA~~Lae~~g---~~Vlll-E~g~ 90 (310)
+.|||+|..|...+..|.+. | .+|+++ ++.+
T Consensus 2 I~iIG~G~mg~al~~~l~~~-g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLAS-GIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TS-GGEEEEEEESSH
T ss_pred EEEECCCHHHHHHHHHHHHC-CCCceeEEeeccCcH
Confidence 57899999999999999997 8 899976 7764
No 482
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=84.67 E-value=1.1 Score=45.40 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-|-|||+|..|.-.|..++.. |++|.|+|..+
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~-G~~V~l~d~~~ 368 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDK-GLKTVLKDATP 368 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhC-CCcEEEecCCH
Confidence 599999999999999999998 99999999765
No 483
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=84.65 E-value=1.2 Score=42.63 Aligned_cols=33 Identities=12% Similarity=0.281 Sum_probs=28.4
Q ss_pred cEEEECCChhHHHHHHHHhccC-CCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVA-HWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~-g~~VlllE~g~ 90 (310)
.+.|||.|..|+++|..||+.+ |.+|+.+|..+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 4899999999999999999862 57899999754
No 484
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=84.49 E-value=1.3 Score=40.53 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=27.6
Q ss_pred cEEEECCChhHHHHHHHHhccCC--------CeEEEEcC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAH--------WSILLLEA 88 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g--------~~VlllE~ 88 (310)
.+.|||+|.-|.+.|..|+++ | .+|.|-.+
T Consensus 1 kI~VIGaG~wGtALA~~la~n-g~~~~~~~~~~V~lw~~ 38 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN-ARALPELFEESVRMWVF 38 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCcccccCCceEEEEEe
Confidence 378999999999999999998 8 89999977
No 485
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=84.48 E-value=1.3 Score=39.50 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-.++|||.|.+|..+|..|... |.+|.++++.+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~ 185 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKAL-GANVTVGARKS 185 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence 5799999999999999999997 89999998874
No 486
>PRK06153 hypothetical protein; Provisional
Probab=84.42 E-value=1.3 Score=40.90 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=32.2
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~ 93 (310)
.--|.|||.|..|+.+|..|++.+-.++.|+|......
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~ 213 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQ 213 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecc
Confidence 46899999999999999999998445899999875433
No 487
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=84.34 E-value=1.5 Score=37.58 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=30.6
Q ss_pred cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD 91 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~ 91 (310)
..-|+|||.|..|+.+|..|+.. |. ++.|+|....
T Consensus 21 ~~~VlivG~GglGs~va~~La~~-Gvg~i~lvD~D~v 56 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAA-GVGKLGLVDDDVV 56 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCEE
Confidence 56899999999999999999998 65 7999987653
No 488
>PRK06057 short chain dehydrogenase; Provisional
Probab=84.34 E-value=1.4 Score=38.06 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=28.7
Q ss_pred cEEEECC-ChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGG-GSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-++|+|+ |..|..+|.+|+++ |++|+++.+..
T Consensus 9 ~vlItGasggIG~~~a~~l~~~-G~~v~~~~r~~ 41 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAAE-GATVVVGDIDP 41 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCH
Confidence 5899999 89999999999998 99999998754
No 489
>PRK07326 short chain dehydrogenase; Provisional
Probab=84.32 E-value=1.3 Score=37.51 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=27.8
Q ss_pred cEEEECC-ChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGG-GSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
=++|+|+ |..|..+|.+|++. |.+|+++.+.+
T Consensus 8 ~ilItGatg~iG~~la~~l~~~-g~~V~~~~r~~ 40 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAE-GYKVAITARDQ 40 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHC-CCEEEEeeCCH
Confidence 4788885 89999999999997 99999998753
No 490
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=84.31 E-value=1.2 Score=42.98 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=29.0
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.-.|+|+|+|.+|+.++.-+... |.+|.++|..+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 45899999999999988777776 88999998764
No 491
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=84.12 E-value=1.2 Score=39.84 Aligned_cols=32 Identities=28% Similarity=0.520 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-|-|||+|..|.-.|..+|.. |++|++.|...
T Consensus 5 kv~ViGaG~MG~gIA~~~A~~-G~~V~l~D~~~ 36 (307)
T COG1250 5 KVAVIGAGVMGAGIAAVFALA-GYDVVLKDISP 36 (307)
T ss_pred EEEEEcccchhHHHHHHHhhc-CCceEEEeCCH
Confidence 478999999999999999994 99999999873
No 492
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=84.03 E-value=1.6 Score=35.18 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=27.2
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.|-|||-|..|...|.+|.++ |++|.+.++.+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~-g~~v~~~d~~~ 34 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKA-GYEVTVYDRSP 34 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-TTEEEEEESSH
T ss_pred EEEEEchHHHHHHHHHHHHhc-CCeEEeeccch
Confidence 477999999999999999997 99999999764
No 493
>PLN02494 adenosylhomocysteinase
Probab=83.80 E-value=1.5 Score=41.53 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=31.0
Q ss_pred cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
.-.++|||.|..|..+|.+|... |.+|+++|..+.
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~ 288 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPI 288 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCch
Confidence 34799999999999999999887 899999998753
No 494
>PRK08177 short chain dehydrogenase; Provisional
Probab=83.78 E-value=1.7 Score=36.74 Aligned_cols=32 Identities=28% Similarity=0.526 Sum_probs=28.0
Q ss_pred EEEEC-CChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311 59 FIVIG-GGSAGAVVASRLSEVAHWSILLLEAGPD 91 (310)
Q Consensus 59 vIVVG-aG~aG~~aA~~Lae~~g~~VlllE~g~~ 91 (310)
++|.| +|..|..+|.+|++. |++|+++.+.+.
T Consensus 4 vlItG~sg~iG~~la~~l~~~-G~~V~~~~r~~~ 36 (225)
T PRK08177 4 ALIIGASRGLGLGLVDRLLER-GWQVTATVRGPQ 36 (225)
T ss_pred EEEeCCCchHHHHHHHHHHhC-CCEEEEEeCCCc
Confidence 67888 688899999999998 999999998753
No 495
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=83.58 E-value=2 Score=33.85 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=27.7
Q ss_pred cEEEECC-ChhHHHHHHHHhccCC--CeEEEEcCCC
Q psy17311 58 DFIVIGG-GSAGAVVASRLSEVAH--WSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGa-G~aG~~aA~~Lae~~g--~~VlllE~g~ 90 (310)
.|.|||+ |..|.++|+.|... + .++.|+|...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~-~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQ-GLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-TTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhC-CCCCceEEeccCc
Confidence 4789999 99999999999996 4 3699999874
No 496
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=83.54 E-value=1.2 Score=39.46 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=28.6
Q ss_pred EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
|-|||.|..|...|.+|++. |.+|.+.++.+
T Consensus 2 IgvIG~G~mG~~iA~~l~~~-G~~V~~~dr~~ 32 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKA-GYQLHVTTIGP 32 (291)
T ss_pred EEEEEecHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence 67999999999999999997 99999999874
No 497
>PRK06720 hypothetical protein; Provisional
Probab=83.50 E-value=1.8 Score=35.20 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=28.2
Q ss_pred ccEEEECCC-hhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 57 YDFIVIGGG-SAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 57 ~DvIVVGaG-~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
--++|.|++ ..|..+|..|++. |.+|.++++..
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~-G~~V~l~~r~~ 50 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQ-GAKVIVTDIDQ 50 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHC-CCEEEEEECCH
Confidence 468899976 5999999999997 99999998763
No 498
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=83.34 E-value=1.7 Score=37.51 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=27.9
Q ss_pred cEEEECC-ChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGG-GSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
-++|.|+ |..|..+|.+|+++ |++|+++.+..
T Consensus 8 ~vlItGas~~iG~~ia~~l~~~-G~~v~~~~r~~ 40 (257)
T PRK07067 8 VALLTGAASGIGEAVAERYLAE-GARVVIADIKP 40 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHc-CCEEEEEcCCH
Confidence 4788885 88899999999998 99999998754
No 499
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.32 E-value=1.6 Score=39.31 Aligned_cols=31 Identities=26% Similarity=0.507 Sum_probs=26.9
Q ss_pred EEEECCChhHHHHHHHHhccCCC--eEEEEcCCC
Q psy17311 59 FIVIGGGSAGAVVASRLSEVAHW--SILLLEAGP 90 (310)
Q Consensus 59 vIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~ 90 (310)
|.|||+|..|.++|+.|+.. +. .+.|+|...
T Consensus 2 i~IIGaG~VG~~~a~~l~~~-~~~~elvL~Di~~ 34 (307)
T cd05290 2 LVVIGAGHVGSAVLNYALAL-GLFSEIVLIDVNE 34 (307)
T ss_pred EEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCc
Confidence 78999999999999999986 54 699999754
No 500
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.31 E-value=1.5 Score=41.67 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90 (310)
Q Consensus 58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~ 90 (310)
.+.|+|.|..|.++|..|.+. |.+|.+.|+.+
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~-G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKL-GAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHC-CCEEEEECCCC
Confidence 599999999999999999997 99999999865
Done!