RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17311
(310 letters)
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 240 bits (615), Expect = 2e-75
Identities = 114/260 (43%), Positives = 145/260 (55%), Gaps = 31/260 (11%)
Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG-PDENE--VTDVPS-LAAWLQLSKF 110
EYD+I+IG GSAG V+A+RLSE S+LLLEAG PD +P+ LA LQ ++
Sbjct: 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRY 63
Query: 111 DWQYKTEP----TGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL-G 165
+W Y+TEP R R PRGKVLGGSS +N M+Y+RGN DYD+W L G
Sbjct: 64 NWAYETEPEPHMNNR--------RMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPG 115
Query: 166 NPGWGYDDVLPYFKKSEDNR---NPY------LAKNRSLKLSNGLHD--VEAGQELGYE- 213
GW Y D LPYFKK+E + Y L+ R +N L VEAG + GY
Sbjct: 116 LEGWSYADCLPYFKKAETRDGGEDDYRGGDGPLSVTRGKPGTNPLFQAFVEAGVQAGYPR 175
Query: 214 NRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKK 273
D+NG +Q GF T+ G R S A+A+L P KR NL I A +IL K+
Sbjct: 176 TDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEG--KR 233
Query: 274 AYGVQFIRHGIKQTVLARRE 293
A GV++ R G ++T ARRE
Sbjct: 234 AVGVEYERGGGRETARARRE 253
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 188 bits (480), Expect = 8e-56
Identities = 101/258 (39%), Positives = 138/258 (53%), Gaps = 23/258 (8%)
Query: 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP-DENEVTDVPSLAAWLQLSKF-D 111
EYD++++G GSAG+V+A+RLS+ S+L+LEAG D + +P+ A+L D
Sbjct: 5 KMEYDYVIVGSGSAGSVLAARLSDAGL-SVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYD 63
Query: 112 WQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL-GNPGWG 170
W ++TEP L + WPRGKVLGGSS +N M+YVRG+ D+D W G PGW
Sbjct: 64 WGFRTEPEPH--LRGRELA--WPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWP 119
Query: 171 YDDVLPYFKKSEDNRNPYLAKNRSLKLSNG-LHD-------------VEAGQELGYE-NR 215
YDDVLPYFK++ED R+ G L +EAG++LG+
Sbjct: 120 YDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPIARAFIEAGEQLGFPTTP 179
Query: 216 DINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAY 275
D NG Q GF TI G R S A+A+L+P KR NL + A V +IL+
Sbjct: 180 DPNGADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGDRAVGV 239
Query: 276 GVQFIRHGIKQTVLARRE 293
V+ G +T +A RE
Sbjct: 240 EVEIGDGGTIETAVAARE 257
>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase. Choline dehydrogenase
catalyzes the conversion of exogenously supplied choline
into the intermediate glycine betaine aldehyde, as part
of a two-step oxidative reaction leading to the
formation of osmoprotectant betaine. This enzymatic
system can be found in both gram-positive and
gram-negative bacteria. As in Escherichia coli ,
Staphylococcus xylosus , and Sinorhizobium meliloti,
this enzyme is found associated in a transciptionally
co-induced gene cluster with betaine aldehyde
dehydrogenase, the second catalytic enzyme in this
reaction. Other gram-positive organisms have been shown
to employ a different enzymatic system, utlizing a
soluable choline oxidase or type III alcohol
dehydrogenase instead of choline dehydrogenase. This
enzyme is a member of the GMC oxidoreductase family
(pfam00732 and pfam05199), sharing a common
evoluntionary origin and enzymatic reaction with alcohol
dehydrogenase. Outgrouping from this model, Caulobacter
crescentus shares sequence homology with choline
dehydrogenase, yet other genes participating in this
enzymatic reaction have not currently been identified
[Cellular processes, Adaptations to atypical
conditions].
Length = 532
Score = 187 bits (476), Expect = 3e-55
Identities = 101/252 (40%), Positives = 137/252 (54%), Gaps = 22/252 (8%)
Query: 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG-PD--ENEVTDVPSLAAW-LQLSKFDWQ 113
D+I+IGGGSAG+V+A RLSE S+L+LEAG D + + +P+ A+ +++W
Sbjct: 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWI 60
Query: 114 YKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHW-ESLGNPGWGYD 172
Y+TEP N R RGKVLGGSS +N M+Y RGN DY+ W + G W Y
Sbjct: 61 YETEPEPH----MNNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYA 116
Query: 173 DVLPYFKKSEDN---RNPYLAKNRSLKLSNGLHD-------VEAGQELGYE-NRDINGEK 221
D LPY+K+ E PY + +K+ G D +EAG E GY D+NG +
Sbjct: 117 DCLPYYKRLETTFGGEKPYRGHDGPIKVRRGPADNPLFQAFIEAGVEAGYNKTPDVNGFR 176
Query: 222 QTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR 281
Q GF T+ G R S A+A+L P KR NL + RA VTKI +A GV+F +
Sbjct: 177 QEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFE--GNRATGVEFKK 234
Query: 282 HGIKQTVLARRE 293
G K+ A +E
Sbjct: 235 GGRKEHTEANKE 246
>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase. This family of
proteins bind FAD as a cofactor.
Length = 218
Score = 128 bits (325), Expect = 3e-36
Identities = 58/176 (32%), Positives = 79/176 (44%), Gaps = 16/176 (9%)
Query: 127 NQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL-GNPGWGYDDVLPYFKKSEDNR 185
N R P G +GG S +N+ +R D W S G GWGYDD LPY K E
Sbjct: 15 NGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGP- 73
Query: 186 NPYLAKNRSLKLSNGLHDV--EAGQELGYE----NRDINGEKQTGFMVAQGTIRRGSRCS 239
L + L+ +A +ELGY R+ NG GF G++ S
Sbjct: 74 ---LGVTTKGIEESPLNQALLKAAEELGYPVEAVPRNSNGCHYCGFCGLG--CPTGAKQS 128
Query: 240 TAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRH--GIKQTVLARRE 293
TA+ +LRP +R NL I A KI++ +A GV+ GIK+ + A +E
Sbjct: 129 TARTWLRPALER-NLRILTGAKAEKIIILGRGGRAVGVEARDGGGGIKRLITAAKE 183
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family. This model
describes a set of dehydrogenases belonging to the
glucose-methanol-choline oxidoreductase (GMC
oxidoreductase) family. Members of the present family
are restricted to Actinobacterial genome contexts
containing also members of families TIGR03962 and
TIGR03969 (the mycofactocin system), and are proposed to
be uniform in function.
Length = 487
Score = 125 bits (315), Expect = 1e-32
Identities = 82/257 (31%), Positives = 118/257 (45%), Gaps = 34/257 (13%)
Query: 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPS-LAAWLQL-----SKFD 111
D +V+GGGSAG VVA+RLSE ++ +LEAGP + + +P+ L L+L S
Sbjct: 2 DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAGPGYRDPSRLPAQLTDGLRLPIGPASPVV 61
Query: 112 WQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGY 171
W+Y E T + + RG+VLGGS +N + R D+D W PGW +
Sbjct: 62 WRYGVELTDGP-----RRASAIVRGRVLGGSGAVNGGYFCRALPADFDAW---PIPGWSW 113
Query: 172 DDVLPYFKKSEDNRN------------PYLAKNRSLKLSNGLHDVEAGQELGY-ENRDIN 218
DDVLP+F+ E + + P +S A G+ D+N
Sbjct: 114 DDVLPHFRAIETDLDFDGPLHGTAGPIPVRRTAELDGISAAFVA--AALGAGFGWIADLN 171
Query: 219 G---EKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAY 275
G + TG + G R STA A+L P KR NL + V +IL + A
Sbjct: 172 GSGPDAPTGVGAVPLNVDGGRRVSTAVAYLLPALKRPNLTVEADTRVVRILFSGTR--AV 229
Query: 276 GVQFIRHGIKQTVLARR 292
GV+ + G +T+ A R
Sbjct: 230 GVEVLGDGGPRTLRADR 246
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD.
Length = 587
Score = 48.6 bits (116), Expect = 2e-06
Identities = 71/261 (27%), Positives = 104/261 (39%), Gaps = 46/261 (17%)
Query: 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG--PDENEVTDVPSLAAWLQLSKFD 111
YD+IV+GGG+AG +A+ LS+ ++S+LLLE G P N S + D
Sbjct: 53 DSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANV---SFLENFHIGLAD 107
Query: 112 WQYKTEPTGRACLGYNQGRCSW-----PRGKVLGGSSVLNYMLYVRGN-RFDYDHWESLG 165
T PT + Q S R +VLGG + +N Y R + RF +
Sbjct: 108 ----TSPTSAS-----QAFISTDGVINARARVLGGGTCINAGFYSRASTRF-------IQ 151
Query: 166 NPGWGYDDVLPYFKKSEDN--RNPYLAKNRSLKLSNGLHDVEAGQELGYENRDINGEKQT 223
GW V + E P +A ++ L + L +V G+ + G K
Sbjct: 152 KAGWDAKLVNESYPWVERQIVHWPKVAPWQAA-LRDSLLEVGVSPFNGFTYDHVYGTK-- 208
Query: 224 GFMVAQGTI--RRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATK--KAYGVQF 279
GTI G R TA L L + + A V KI+ + + K +A GV F
Sbjct: 209 ----VGGTIFDEFGRR-HTAAELLAAGNPN-KLRVLLHATVQKIVFDTSGKRPRATGVIF 262
Query: 280 IRH--GIKQTVLARREELEVI 298
Q L+ + E+I
Sbjct: 263 KDENGNQHQAFLSNNKGSEII 283
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases, as
yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme activities
have been described, UbiB (which acts first at position
6, see TIGR01982), UbiH (which acts at position 4,) and
UbiF (which acts at position 5,). UbiH and UbiF are
similar to one another and form the basis of this
subfamily. Interestingly, E. coli contains another
hydroxylase gene, called visC, that is highly similar to
UbiF, adjacent to UbiH and, when mutated, results in a
phenotype similar to that of UbiH (which has also been
named visB). Several other species appear to have three
homologs in this family, although they assort themselves
differently on phylogenetic trees (e.g. Xylella and
Mesorhizobium) making it difficult to ascribe a specific
activity to each one. Eukaryotes appear to have only a
single homolog in this subfamily (COQ6,) which
complements UbiH, but also possess a non-orthologous
gene, COQ7 which complements UbiF [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 387
Score = 38.0 bits (89), Expect = 0.004
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPS 100
D +++GGG G +A L+ + L+EA P
Sbjct: 1 DIVIVGGGPVGLALALALARSGGLKVALIEATPLPAPADPGFD 43
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 37.8 bits (89), Expect = 0.006
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
+YD IVIG G AG V A R +++ + L+E GP
Sbjct: 2 EKYDVIVIGAGPAGYVAARRAAKLGK-KVALIEKGP 36
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 37.3 bits (87), Expect = 0.009
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 54 HREYDFIVIGGGSAGAVVASRLSEV-AHWSILLLE 87
+YD ++IGGG GA A LSE S+ LLE
Sbjct: 1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLE 35
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 37.2 bits (86), Expect = 0.009
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
+ D ++IGGG G A L+E + +LEAG
Sbjct: 4 KMDVVIIGGGIVGLSAAYYLAE-RGADVTVLEAGE 37
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 33.6 bits (78), Expect = 0.012
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 61 VIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91
++G G +G V A L++ +L+LE
Sbjct: 1 IVGAGLSGLVAAYLLAK-RGKDVLVLEKRDR 30
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 36.4 bits (85), Expect = 0.017
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
EYD +VIG G AG V A R ++ + L+E G
Sbjct: 4 EYDVVVIGAGPAGYVAAIRAAQ-LGLKVALVEKGE 37
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 35.9 bits (84), Expect = 0.020
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 52 QLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLE 87
+ YD IVIG G AG +A+R + + L+E
Sbjct: 1 TPAQRYDAIVIGAGQAGPPLAARAAG-LGMKVALIE 35
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family
includes various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 35.0 bits (81), Expect = 0.034
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
D +VIGGG G A L+ S+ LLE G
Sbjct: 1 DVVVIGGGIVGLSTAYELAR-RGLSVTLLERGD 32
>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 34.9 bits (81), Expect = 0.052
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
+D I+IGGG AG + A ++ +LL++ GP
Sbjct: 1 MERFDVIIIGGGPAGLMAAISAAKAGR-RVLLIDKGP 36
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 34.4 bits (79), Expect = 0.068
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
EYD +++G G AG+ A RL++ +L+LE G
Sbjct: 3 EYDVVIVGAGPAGSSAARRLAKAG-LDVLVLEKGS 36
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases
of animals, yeast, and a number of animal-resident
bacteria [Energy metabolism, Electron transport].
Length = 450
Score = 34.0 bits (78), Expect = 0.091
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 55 REYDFIVIGGGSAGAVVASRLSE 77
+ YD++VIGGGS G A R +E
Sbjct: 1 KHYDYLVIGGGSGGIASARRAAE 23
>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This
model represents the FAD-dependent monoxygenase
responsible for the second hydroxylation step in the
aerobic ubiquinone bioynthetic pathway. The scope of
this model is limited to the proteobacteria. This family
is closely related to the UbiF hydroxylase which
catalyzes the final hydroxylation step. The enzyme has
also been named VisB due to a mutant VISible light
sensitive phenotype [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 382
Score = 33.8 bits (78), Expect = 0.10
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN--EVTDVPSLA 102
D I++GGG G +A LS + I L+EA D SLA
Sbjct: 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLA 47
>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest
light for photosynthesis, and dissipate excess light
energy absorbed by the antenna pigments. The
cyclisation of lycopene (psi, psi-carotene) is a key
branch point in the pathway of carotenoid biosynthesis.
Two types of cyclic end groups are found in higher
plant carotenoids: the beta and epsilon rings.
Carotenoids with two beta rings are ubiquitous, and
those with one beta and one epsilon ring are common;
however, carotenoids with two epsilon rings are rare.
Length = 374
Score = 33.4 bits (77), Expect = 0.12
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 58 DFIVIGGGSAGAVVASRLSE-VAHWSILLLEAGPD 91
D +++G G AG ++A RL + +LL++AGP
Sbjct: 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPG 35
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene
cyclases. The plant lycopene epsilon cyclases also
transform neurosporene to alpha zeacarotene.
Length = 388
Score = 33.6 bits (77), Expect = 0.13
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91
D VIGGG AG +A L+ + L+E P
Sbjct: 1 DLAVIGGGPAGLAIALELAR-PGLRVQLIEPHPP 33
>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 33.4 bits (77), Expect = 0.13
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89
E+D IVIGGG GA +A + + L+E G
Sbjct: 10 MEEFDVIVIGGGITGAGIARDAA-GRGLKVALVEKG 44
>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
Length = 447
Score = 33.1 bits (76), Expect = 0.15
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 25 LVPVLIAGLSYYNYDMYDPENRPIDQQQLHREYDFIVIGGGSAGAVVASRLSE 77
LVP + +DP + D +V+GGG AG VA ++SE
Sbjct: 5 LVPETKKENLDFELPRFDPSKSRV--------VDLVVVGGGPAGLAVAQQVSE 49
>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
Length = 393
Score = 32.9 bits (76), Expect = 0.19
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 57 YDFIVIGGGSAGAVVASRLSEVA-HWSILLLE 87
YDF++IGGG G A +L E I +LE
Sbjct: 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLE 34
>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 415
Score = 33.1 bits (76), Expect = 0.19
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 52 QLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVT 96
YD ++GGG G +A+ L + + I L+EA P E
Sbjct: 14 TRSLTYDVAIVGGGIVGLTLAAALKD-SGLRIALIEAQPAEAAAA 57
>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 32.5 bits (74), Expect = 0.25
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLE 87
+YD I++GG AG V+A LS+ +L+LE
Sbjct: 33 DYDVIIVGGSIAGPVLAKALSK-QGRKVLMLE 63
>gnl|CDD|236214 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated.
Length = 466
Score = 32.5 bits (75), Expect = 0.25
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Query: 56 EYDFIVIGGGSAG--AVVASRLSEVAHWSILLLEAGPDE 92
D +VIGGG+A A +A+R + S+LLLEA P E
Sbjct: 4 MVDVLVIGGGNAALCAALAAREAGA---SVLLLEAAPRE 39
>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6. This
model represents the monooxygenase responsible for the
4-hydroxylateion of the phenol ring in the aerobic
biosynthesis of ubiquinone.
Length = 437
Score = 32.4 bits (74), Expect = 0.27
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 57 YDFIVIGGGSAGAVVASRLS---EVAHWSILLLEAGPDENEVTDVPSLAAWLQLSK 109
+D +++GGG G +A+ L +LLL+A D P L +
Sbjct: 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV-------DNPKLKSRNYEKP 49
>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 395
Score = 32.1 bits (74), Expect = 0.32
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 57 YDFIVIGGGSAGAVVASRLSEVAH--WSILLLEA 88
D I++GGG AGA +A LS ++H + L+EA
Sbjct: 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEA 37
>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase. Members
of this protein family are salicylate 1-monooxygenase,
also called salicylate hydroxylase. This enzyme
converts salicylate to catechol, which is a common
intermediate in the degradation of a number of aromatic
compounds (phenol, toluene, benzoate, etc.). The gene
for this protein may occur in catechol degradation
genes, such as those of the meta-cleavage pathway.
Length = 414
Score = 32.1 bits (73), Expect = 0.34
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 61 VIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEV 95
+IGGG AG +A L + +H ++ L EA P EV
Sbjct: 5 IIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEV 39
>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This
model represents a subfamily which includes
geranylgeranyl reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 295
Score = 31.9 bits (73), Expect = 0.35
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLE 87
YD +V+G G AGA A RL++ +LLLE
Sbjct: 1 YDVVVVGAGPAGASAAYRLADKGL-RVLLLE 30
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This
family appears to be a methyltransferase domain.
Length = 154
Score = 30.5 bits (69), Expect = 0.53
Identities = 15/64 (23%), Positives = 19/64 (29%), Gaps = 10/64 (15%)
Query: 8 FGTILKTGLTIV----GTGIWLVPVLIAGLSYYNYDMYDPENRP------IDQQQLHREY 57
LK G ++ GTGI L + G D D L +Y
Sbjct: 16 LLPRLKPGGRVLDIGCGTGILLRLLRERGFDVTGVDPSPAAVLIFSLFDAPDPAVLAGKY 75
Query: 58 DFIV 61
D I
Sbjct: 76 DLIT 79
>gnl|CDD|181564 PRK08849, PRK08849,
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 384
Score = 31.7 bits (72), Expect = 0.53
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89
+YD V+GGG GA A ++ S+ ++E G
Sbjct: 3 KYDIAVVGGGMVGAATALGFAKQGR-SVAVIEGG 35
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 31.7 bits (73), Expect = 0.57
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 55 REYDFIVIGGGSAGAVVASRLSE 77
EYD IVIG G G V A R ++
Sbjct: 3 FEYDVIVIGAGPGGYVAAIRAAQ 25
>gnl|CDD|235362 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated.
Length = 618
Score = 31.6 bits (73), Expect = 0.57
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Query: 54 HREYDFIVIGGGSAG---AVVASRL 75
EYD IV+GGG AG A+ A+R+
Sbjct: 2 PEEYDVIVVGGGHAGCEAALAAARM 26
>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 31.4 bits (72), Expect = 0.64
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEA 88
D +IGGG AGA +A L+ W + L EA
Sbjct: 262 DAAIIGGGIAGAALALALAR-RGWQVTLYEA 291
>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 31.3 bits (72), Expect = 0.67
Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 2/19 (10%)
Query: 55 REYDFIVIGGGSAGAVVAS 73
++YD IVIGGGS G +AS
Sbjct: 3 KDYDLIVIGGGSGG--IAS 19
>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This
family of proteins contains FAD dependent
oxidoreductases and related proteins.
Length = 415
Score = 31.0 bits (71), Expect = 0.74
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 7/36 (19%)
Query: 58 DFIVIGGGSAG---AVVASRLSEVAHWSILLLEAGP 90
D +V+GGG AG A+ A+RL +LL+E
Sbjct: 1 DVVVVGGGPAGVAAAIAAARL----GAKVLLVERRG 32
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 30.7 bits (69), Expect = 0.99
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 57 YDFIVIGGGSAGAVVASRLSE 77
YD IVIGGGS G A R +
Sbjct: 49 YDLIVIGGGSGGMAAARRAAR 69
>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 30.6 bits (70), Expect = 1.1
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
YD IVIGGG+AG + A ++ +LL++ G
Sbjct: 1 YDVIVIGGGAAGLMAAISAAKRGR-RVLLIDKGK 33
>gnl|CDD|130849 TIGR01789, lycopene_cycl, lycopene cyclase. This model
represents a family of bacterial lycopene cyclases
catalyzing the transformation of lycopene to carotene.
These enzymes are found in a limited spectrum of alpha
and gamma proteobacteria as well as Flavobacterium.
Length = 370
Score = 30.2 bits (68), Expect = 1.2
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 58 DFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGP 90
D I++GGG AG ++A RL + I ++EAG
Sbjct: 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34
>gnl|CDD|236374 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 30.3 bits (69), Expect = 1.4
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 50 QQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
+ D ++IG G+AG +A RL+E H + +L GP
Sbjct: 2 NTSPEHQCDVLIIGSGAAGLSLALRLAE--HRRVAVLSKGP 40
>gnl|CDD|215737 pfam00128, Alpha-amylase, Alpha amylase, catalytic domain. Alpha
amylase is classified as family 13 of the glycosyl
hydrolases. The structure is an 8 stranded alpha/beta
barrel containing the active site, interrupted by a ~70
a.a. calcium-binding domain protruding between beta
strand 3 and alpha helix 3, and a carboxyl-terminal
Greek key beta-barrel domain.
Length = 314
Score = 29.9 bits (68), Expect = 1.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 21 TGIWLVPVLIAGLSYYNYDMYD 42
T IWL P+ + SY+ YD+ D
Sbjct: 19 TAIWLSPIFDSPQSYHGYDITD 40
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 30.0 bits (68), Expect = 1.6
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
D ++IGGG AG A RL+ + L+E
Sbjct: 1 DVVIIGGGPAGLAAAIRLAR-LGLKVALIEREG 32
>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family
protein; Provisional.
Length = 388
Score = 29.9 bits (68), Expect = 1.6
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
H ++D +V+GGG GA +A L++ + LL
Sbjct: 3 HMKFDVVVVGGGLVGASLALALAQSGL-RVALLAPRA 38
>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope
biogenesis, outer membrane].
Length = 374
Score = 30.0 bits (68), Expect = 1.7
Identities = 9/32 (28%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEA 88
+D++++G G +GAV+A +++ +L++E
Sbjct: 2 FDYLIVGAGLSGAVIAEVAAQLGK-RVLIVEK 32
>gnl|CDD|233689 TIGR02023, BchP-ChlP, geranylgeranyl reductase. This model
represents a group of geranylgeranyl reductases
specific for the biosyntheses of bacteriochlorophyll
and chlorophyll. It is unclear whether the processes of
isoprenoid ligation to the chlorin ring and reduction
of the geranylgeranyl chain to a phytyl chain are
necessarily ordered the same way in all species (see
introduction to ) [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 388
Score = 29.8 bits (67), Expect = 1.8
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 57 YDFIVIGGGSAGAVVASRLSEVAHWSILL 85
YD VIGGG +GA A L+ +ILL
Sbjct: 1 YDVAVIGGGPSGATAAETLARAGIETILL 29
>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 29.8 bits (67), Expect = 1.9
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93
D IV+G G AG V A+ L++ A +L+L+ ++N
Sbjct: 5 TADVIVVGAGLAGLVAAAELAD-AGKRVLILDQEGEQN 41
>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 29.8 bits (68), Expect = 2.1
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 16/68 (23%)
Query: 55 REYDFIVIGGGSAGAVVASRLSE----VA---------HWS---ILLLEAGPDENEVTDV 98
++D +VIGGG AG A +E VA H+S I LL PD V+D
Sbjct: 1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQGALHFSSGSIDLLGYLPDGQPVSDP 60
Query: 99 PSLAAWLQ 106
A L
Sbjct: 61 FEALAALA 68
>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase. This model represents the
mercuric reductase found in the mer operon for the
detoxification of mercury compounds. MerA is a
FAD-containing flavoprotein which reduces Hg(II) to
Hg(0) utilizing NADPH [Cellular processes,
Detoxification].
Length = 463
Score = 29.3 bits (66), Expect = 2.5
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
YD ++IG G+A A + +E+ S+ ++E GP
Sbjct: 1 YDLVIIGSGAAAFAAAIKAAELGA-SVAMVERGP 33
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the
E3 component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to
have distinct functions (ferric leghemoglobin reductase
and NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 29.5 bits (67), Expect = 2.6
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 56 EYDFIVIGGGSAGAVVASRL 75
YD IVIGGG G V A R
Sbjct: 1 AYDVIVIGGGPGGYVAAIRA 20
>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis.
Length = 357
Score = 29.0 bits (65), Expect = 3.0
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWL 105
+ + D +++G GSAG A LS+ + + ++ E V+ P AWL
Sbjct: 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAII-----EQSVS--PGGGAWL 134
>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. This
enzyme is involved in the conversion of UDP-GALP into
UDP-GALF through a 2-keto intermediate. It contains FAD
as a cofactor. The gene is known as glf, ceoA, and
rfbD. It is known experimentally in E. coli,
Mycobacterium tuberculosis, and Klebsiella pneumoniae
[Cell envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 377
Score = 29.0 bits (65), Expect = 3.0
Identities = 10/31 (32%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLE 87
+D+I++G G +G V+A+ L+++ +L++E
Sbjct: 2 FDYIIVGAGLSGIVLANILAQLNK-RVLVVE 31
>gnl|CDD|219908 pfam08568, Kinetochor_Ybp2, Uncharacterized protein family,
YAP/Alf4/glomulin. This entry contains a number of
protein families with apparently unrelated functions.
These include the YAP binding proteins of yeasts. These
are stress response and redox homeostasis proteins,
induced by hydrogen peroxide or induced in response to
alkylating agent methyl methanesulphonate (MMS). The
family includes Aberrant root formation protein 4 (Alf4)
of Arabidopsis thaliana (Mouse-ear cress), which is
required for the initiation of lateral roots independent
from auxin signalling. It may also function in
maintaining the pericycle in the mitotically competent
state needed for lateral root formation. The family
includes glomulin (FAP68), which is essential for normal
development of the vasculature and may represent a
naturally occurring ligand of the immunophilins FKBP59
and FKBP12.
Length = 625
Score = 29.4 bits (66), Expect = 3.2
Identities = 12/38 (31%), Positives = 14/38 (36%)
Query: 177 YFKKSEDNRNPYLAKNRSLKLSNGLHDVEAGQELGYEN 214
+ KK D R P K L L+ EA E E
Sbjct: 573 FLKKKWDLRLPVFEKEYLEPLKTLLNSSEAELEAEKEP 610
>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase
(GATase1)-like domain. Type 1 glutamine
amidotransferase (GATase1)-like domain. This group
includes proteins similar to Class I glutamine
amidotransferases, the intracellular PH1704 from
Pyrococcus horikoshii, the C-terminal of the large
catalase: Escherichia coli HP-II, Sinorhizobium
meliloti Rm1021 ThuA. and, the A4 beta-galactosidase
middle domain. The majority of proteins in this group
have a reactive Cys found in the sharp turn between a
beta strand and an alpha helix termed the nucleophile
elbow. For Class I glutamine amidotransferases
proteins which transfer ammonia from the amide side
chain of glutamine to an acceptor substrate, this Cys
forms a Cys-His-Glu catalytic triad in the active site.
Glutamine amidotransferases activity can be found in a
range of biosynthetic enzymes included in this cd:
glutamine amidotransferase, formylglycinamide
ribonucleotide, GMP synthetase, anthranilate synthase
component II, glutamine-dependent carbamoyl phosphate
synthase, cytidine triphosphate synthetase,
gamma-glutamyl hydrolase, imidazole glycerol phosphate
synthase and, cobyric acid synthase. For Pyrococcus
horikoshii PH1704, the Cys of the nucleophile elbow
together with a different His and, a Glu from an
adjacent monomer form a catalytic triad different from
the typical GATase1 triad. The E. coli HP-II C-terminal
domain, S. meliloti Rm1021 ThuA and the A4
beta-galactosidase middle domain lack the catalytic
triad typical GATaseI domains. GATase1-like domains can
occur either as single polypeptides, as in Class I
glutamine amidotransferases, or as domains in a much
larger multifunctional synthase protein, such as
CPSase.
Length = 115
Score = 27.9 bits (62), Expect = 3.2
Identities = 10/54 (18%), Positives = 20/54 (37%)
Query: 36 YNYDMYDPENRPIDQQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89
D+ P+ P++ +YD +++ GG +R + AG
Sbjct: 26 AEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAG 79
>gnl|CDD|233850 TIGR02402, trehalose_TreZ, malto-oligosyltrehalose
trehalohydrolase. Members of this family are the
trehalose biosynthetic enzyme malto-oligosyltrehalose
trehalohydrolase, formally known as
4-alpha-D-{(1->4)-alpha-D-glucano}trehalose
trehalohydrolase (EC 3.2.1.141). It is the TreZ protein
of the TreYZ pathway for trehalose biosynthesis, and
alternative to the OtsAB system [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 544
Score = 29.2 bits (66), Expect = 3.3
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 165 GNPGWGYDDVLPY 177
G GWGYD VLPY
Sbjct: 138 GTRGWGYDGVLPY 150
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 28.9 bits (65), Expect = 3.4
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEA 88
YD +VIG G G A+ L+ A + +LE
Sbjct: 2 PMYDVVVIGAGLNGLAAAALLAR-AGLKVTVLEK 34
>gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase. The enzyme
modelled by This model is responsible for the conversion
of crotonyl-CoA reductase to butyryl-CoA. In serine
cycle methylotrophic bacteria this enzyme is involved in
the process of acetyl-CoA to glyoxylate. In other
bacteria the enzyme is used to produce butyrate for
incorporation into polyketides such as tylosin from
Streptomyces fradiae and coronatine from Pseudomonas
syringae.
Length = 398
Score = 29.0 bits (65), Expect = 3.4
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 19 VGTGIWLVPVLIAGLSYYNYDMYDPENRPID-----QQQLHREYDFIVIGGGSAGAVVAS 73
+G G LV V+ AG++Y N ++ P+ ++ + F +IG ++G V
Sbjct: 35 LGPGEVLVAVMAAGVNYNN--VWAALGEPVSTFAFLRKYGKLDLPFHIIGSDASGVVWRV 92
Query: 74 RLSEVAHWSI 83
V W +
Sbjct: 93 G-PGVTRWKV 101
>gnl|CDD|181594 PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 588
Score = 28.9 bits (65), Expect = 3.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 55 REYDFIVIGGGSAGAVVASRLSE 77
RE+D +VIG G AG A ++S+
Sbjct: 6 REFDAVVIGAGGAGMRAALQISQ 28
>gnl|CDD|223522 COG0445, GidA, Flavin-dependent tRNA uridine
5-carboxymethylaminomethyl modification enzyme GidA
[Cell cycle control, cell division, chromosome
partitioning].
Length = 621
Score = 29.1 bits (66), Expect = 3.6
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 3/23 (13%)
Query: 56 EYDFIVIGGGSAG---AVVASRL 75
EYD IVIGGG AG A+ A+R+
Sbjct: 4 EYDVIVIGGGHAGVEAALAAARM 26
>gnl|CDD|226444 COG3934, COG3934, Endo-beta-mannanase [Carbohydrate transport and
metabolism].
Length = 587
Score = 29.1 bits (65), Expect = 3.6
Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 12/69 (17%)
Query: 114 YKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRG-----NRFDYDHWESLGNPG 168
YK +PT N+ P SV N+ + D H S+G+P
Sbjct: 133 YKLDPTIAGWALRNEPLVEAP-------ISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPA 185
Query: 169 WGYDDVLPY 177
+ PY
Sbjct: 186 SPWPQYAPY 194
>gnl|CDD|147012 pfam04647, AgrB, Accessory gene regulator B. The arg locus
consists of two transcripts: RNAII and RNAIII. RNAII
encodes four genes (agrA, B, C, and D) whose gene
products assemble a quorum sensing system. AgrB and AgrD
are essential for the production of the autoinducing
peptide which functions as a signal for quorum sensing.
AgrB is a transmembrane protein.
Length = 185
Score = 28.3 bits (64), Expect = 3.7
Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 1 MIFALIAFGTILKTGLTIVGTGIWLVPVLIAGLSYYNYDMYDPENRPIDQQQL---HREY 57
+I ++ L L + I ++ +I+ + Y Y D +PI ++L +
Sbjct: 81 IISLILFVLIPLLIKLISLNNYIAIILFIISLIIIYKYAPADTPKKPITNEELRKKLKIK 140
Query: 58 DFIVIGGGSAGAVVASRLSEVAH---WSILL 85
IV+ +++ S + ILL
Sbjct: 141 SIIVLLILLVISLILSENYFILLLIVLGILL 171
>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F
subunit. This family of thioredoxin reductase homologs
is found adjacent to alkylhydroperoxide reductase C
subunit predominantly in cases where there is only one
C subunit in the genome and that genome is lacking the
F subunit partner (also a thioredcxin reductase
homolog) that is usually found (TIGR03140).
Length = 555
Score = 29.0 bits (65), Expect = 3.7
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 57 YDFIVIGGGSAG 68
YD I+IGGG AG
Sbjct: 5 YDLIIIGGGPAG 16
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 28.9 bits (65), Expect = 4.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 56 EYDFIVIGGGSAGAVVA 72
E D +VIGGG+AG + A
Sbjct: 9 ETDILVIGGGTAGPMAA 25
>gnl|CDD|216949 pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide
variety of proteins. These protein include potassium
channels, phosphoesterases, and various other
transporters. This domain binds to NAD.
Length = 116
Score = 27.5 bits (62), Expect = 4.2
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 59 FIVIGGGSAGAVVASRLSEVAHWSILLLE 87
I+IG G G +A L E +++++
Sbjct: 1 IIIIGYGRVGRSLAEELRE-GGPDVVVID 28
>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase [Energy
metabolism, Anaerobic].
Length = 419
Score = 28.8 bits (65), Expect = 4.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 57 YDFIVIGGGSAGAVVASRLSE 77
+D I+IGGG AG A RL+E
Sbjct: 1 FDVIIIGGGLAGLSCALRLAE 21
>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like
domain. Type 1 glutamine amidotransferase
(GATase1)-like domain. This group contains proteins
similar to Class I glutamine amidotransferases, the
intracellular PH1704 from Pyrococcus horikoshii, the
C-terminal of the large catalase: Escherichia coli
HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4
beta-galactosidase middle domain and peptidase E. The
majority of proteins in this group have a reactive Cys
found in the sharp turn between a beta strand and an
alpha helix termed the nucleophile elbow. For Class I
glutamine amidotransferases proteins which transfer
ammonia from the amide side chain of glutamine to an
acceptor substrate, this Cys forms a Cys-His-Glu
catalytic triad in the active site. Glutamine
amidotransferases activity can be found in a range of
biosynthetic enzymes included in this cd: glutamine
amidotransferase, formylglycinamide ribonucleotide, GMP
synthetase, anthranilate synthase component II,
glutamine-dependent carbamoyl phosphate synthase
(CPSase), cytidine triphosphate synthetase,
gamma-glutamyl hydrolase, imidazole glycerol phosphate
synthase and, cobyric acid synthase. For Pyrococcus
horikoshii PH1704, the Cys of the nucleophile elbow
together with a different His and, a Glu from an
adjacent monomer form a catalytic triad different from
the typical GATase1 triad. Peptidase E is believed to
be a serine peptidase having a Ser-His-Glu catalytic
triad which differs from the Cys-His-Glu catalytic
triad of typical GATase1 domains, by having a Ser in
place of the reactive Cys at the nucleophile elbow. The
E. coli HP-II C-terminal domain, S. meliloti Rm1021
ThuA and the A4 beta-galactosidase middle domain lack
the catalytic triad typical GATaseI domains.
GATase1-like domains can occur either as single
polypeptides, as in Class I glutamine
amidotransferases, or as domains in a much larger
multifunctional synthase protein, such as CPSase.
Peptidase E has a circular permutation in the common
core of a typical GTAse1 domain.
Length = 92
Score = 26.8 bits (59), Expect = 4.8
Identities = 9/54 (16%), Positives = 19/54 (35%)
Query: 36 YNYDMYDPENRPIDQQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89
D+ P+ P++ +YD +++ GG + + AG
Sbjct: 26 AEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAG 79
>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed.
Length = 451
Score = 28.4 bits (64), Expect = 5.7
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG 89
YD I+IG GS +++ R A I ++E G
Sbjct: 1 HYDLIIIGTGSGNSILDERF---ADKRIAIVEKG 31
>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some
sequence reports interpreted as a stop codon). In some
members of this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 28.3 bits (63), Expect = 5.9
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 56 EYDFIVIGGGSAGAVVASR 74
+YD IVIGGGS G A
Sbjct: 2 DYDLIVIGGGSGGLAAAKE 20
>gnl|CDD|233811 TIGR02289, M3_not_pepF, oligoendopeptidase, M3 family. This family
consists of probable oligoendopeptidases in the M3
family, related to lactococcal PepF and group B
streptococcal PepB (TIGR00181) but in a distinct clade
with considerable sequence differences. The likely
substrate is small peptides and not whole proteins, as
with PepF, but members are not characterized and the
activity profile may differ. Several bacteria have both
a member of this family and a member of the PepF family.
Length = 549
Score = 28.2 bits (63), Expect = 6.0
Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 29/160 (18%)
Query: 40 MYDPENRPIDQ--QQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTD 97
++ EN P+ Q +L +Y I+ + ++ L + +
Sbjct: 109 LFSEENIPLLQKENKLSTKYTEII---ANIKIDFEGEEKTLSQLIPFLQDPNRSTRK--- 162
Query: 98 VPSLAAWLQLSKFDWQYKTEPTGRACLGYNQ-GRCSWPRGKVLGGSSVLNYMLYVRGNRF 156
AW +F + + E Y++ + K LG S+ ++Y Y NR
Sbjct: 163 ----KAWEARYEFFAEVEEELD----RIYDELVKVRTKIAKNLGFSNYVDYG-YKLKNRT 213
Query: 157 DYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLK 196
DY+ +DV Y + P + R +
Sbjct: 214 DYNA-----------EDVYKYRESVLKYVVPLTTELRKRQ 242
>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed.
Length = 581
Score = 28.1 bits (63), Expect = 6.1
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 52 QLHREYDFIVIGGGSAG---AVVASRLS 76
E D +VIG G+AG AV A+
Sbjct: 8 PPDLECDVLVIGSGAAGLSAAVTAAWHG 35
>gnl|CDD|203096 pfam04820, Trp_halogenase, Tryptophan halogenase. Tryptophan
halogenase catalyzes the chlorination of tryptophan to
form 7-chlorotryptophan. This is the first step in the
biosynthesis of pyrrolnitrin, an antibiotic with
broad-spectrum anti-fungal activity. Tryptophan
halogenase is NADH-dependent.
Length = 457
Score = 28.1 bits (63), Expect = 6.2
Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 58 DFIVIGGGSAGAVVASRLSEVAH--WSILLLEA------GPDENEVTDVPSLAAWLQLSK 109
+++GGG+AG + A+ L+ + L+E+ G E + + + L + +
Sbjct: 1 KIVIVGGGTAGWMAAAALARALKGGLDVTLVESEEIGTVGVGEATIPSIRTFNRMLGIDE 60
Query: 110 FDWQYKTEPT 119
++ T+ T
Sbjct: 61 AEFMRATQAT 70
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 28.0 bits (62), Expect = 6.4
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 59 FIVIGGGSAGAVVASRL-SEVAHWSILLLEAGP 90
+++GGG+AG A+ L + I L+ P
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREP 33
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and
conversion].
Length = 562
Score = 28.1 bits (63), Expect = 6.6
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 54 HREYDFIVIGGGSAGAVVASRLSEVAHW--SILLLEAGP 90
E+D +VIGGG AG A E A + LL P
Sbjct: 4 IHEFDVVVIGGGGAGLRAA---IEAAEAGLKVALLSKAP 39
>gnl|CDD|129242 TIGR00136, gidA, glucose-inhibited division protein A. GidA, the
longer of two forms of GidA-related proteins, appears
to be present in all complete eubacterial genomes so
far, as well as Saccharomyces cerevisiae. A subset of
these organisms have a closely related protein. GidA is
absent in the Archaea. It appears to act with MnmE, in
an alpha2/beta2 heterotetramer, in the
5-carboxymethylaminomethyl modification of uridine 34
in certain tRNAs. The shorter, related protein,
previously called gid or gidA(S), is now called TrmFO
(see model TIGR00137) [Protein synthesis, tRNA and rRNA
base modification].
Length = 617
Score = 28.1 bits (63), Expect = 6.7
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 3/22 (13%)
Query: 57 YDFIVIGGGSAG---AVVASRL 75
+D IVIGGG AG A+ A+R+
Sbjct: 1 FDVIVIGGGHAGCEAALAAARM 22
>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant.
The tripeptide glutathione is an important reductant,
e.g., for maintaining the cellular thiol/disulfide
status and for protecting against reactive oxygen
species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases
of plants and some bacteria, including cyanobacteria
[Energy metabolism, Electron transport].
Length = 446
Score = 28.2 bits (63), Expect = 6.9
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 56 EYDFIVIGGGSAGAVVASRLS 76
+YD VIG GS G V A+RL+
Sbjct: 2 DYDLFVIGAGS-GGVRAARLA 21
>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 438
Score = 28.2 bits (63), Expect = 7.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 57 YDFIVIGGGSAGAVVASRLS 76
YD IVIG G AG +A++L+
Sbjct: 4 YDLIVIGFGKAGKTLAAKLA 23
>gnl|CDD|236101 PRK07803, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 626
Score = 28.1 bits (63), Expect = 7.1
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 55 REYDFIVIGGGSAG--AVVASR 74
YD +VIG G AG A + +R
Sbjct: 7 HSYDVVVIGAGGAGLRAAIEAR 28
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family
includes members that bind FAD. This family includes
the flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 28.0 bits (63), Expect = 7.5
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
D +VIG G AG A +E A + ++E G
Sbjct: 1 DVVVIGSGLAGLAAALEAAE-AGLKVAVVEKGQ 32
>gnl|CDD|179979 PRK05257, PRK05257, malate:quinone oxidoreductase; Validated.
Length = 494
Score = 27.8 bits (63), Expect = 7.7
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 54 HREYDFIVIGGGSAGAVVASRLSEVA-HWSILLLE 87
+ D ++IGGG A + + L E+ WSI + E
Sbjct: 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFE 37
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 27.9 bits (63), Expect = 7.7
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93
+ D IV+G G AG V A+ L++ A +LLL+ + N
Sbjct: 4 DADVIVVGAGLAGLVAAAELAD-AGKRVLLLDQENEAN 40
>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Reviewed.
Length = 391
Score = 27.6 bits (62), Expect = 7.9
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLE 87
D ++GGG GA +A L++ +S+ +LE
Sbjct: 6 TDIAIVGGGMVGAALALGLAQ-HGFSVAVLE 35
>gnl|CDD|236054 PRK07573, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 640
Score = 27.9 bits (63), Expect = 7.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 8/35 (22%)
Query: 43 PENRPIDQQQLHREYDFIVIGGGSAGAVVASRLSE 77
P N+ R++D IV+G G AGA A+ L E
Sbjct: 30 PANK--------RKFDVIVVGTGLAGASAAATLGE 56
>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model
when searched with a partial length search brings in
proteins with a dinucleotide-binding motif (Rossman
fold) over the initial 40 residues of the model,
including oxidoreductases and dehydrogenases. Partially
characterized members include an FAD-binding protein
from Bacillus cereus and flavoprotein HI0933 from
Haemophilus influenzae [Unknown function, Enzymes of
unknown specificity].
Length = 400
Score = 27.9 bits (63), Expect = 8.2
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
Query: 60 IVIGGGSAG---AVVASRLSEVAHWSILLLEAGP 90
I+IGGG+AG A+ A+R S+LLLE
Sbjct: 1 IIIGGGAAGLMAAITAAREGL----SVLLLEKNK 30
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and
related FAD-dependent oxidoreductases [Coenzyme
metabolism / Energy production and conversion].
Length = 387
Score = 27.7 bits (62), Expect = 8.3
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE 92
+ D ++G G AG +A L+ A + LLE P E
Sbjct: 1 KMLDVAIVGAGPAGLALALALAR-AGLDVTLLERAPRE 37
>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated.
Length = 472
Score = 27.6 bits (62), Expect = 8.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 55 REYDFIVIGGGSAGAVVASR 74
+EYD ++IGGG G V A R
Sbjct: 3 KEYDLVIIGGGPGGYVAAIR 22
>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin
reductase subunit; Provisional.
Length = 396
Score = 27.6 bits (61), Expect = 8.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 55 REYDFIVIGGGSAGAVVASRLSE 77
+E I++GGG A A+ A+ L +
Sbjct: 2 KEKTIIIVGGGQAAAMAAASLRQ 24
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 27.9 bits (62), Expect = 9.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 57 YDFIVIGGGSAGAVVA 72
YD +VIGGGS G A
Sbjct: 6 YDLVVIGGGSGGMAAA 21
>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F. This
enzyme is the partner of the peroxiredoxin (alkyl
hydroperoxide reductase) AhpC which contains the
peroxide-reactive cysteine. AhpF contains the reductant
(NAD(P)H) binding domain (pfam00070) and presumably acts
to resolve the disulfide which forms after oxidation of
the active site cysteine in AphC. This proteins contains
two paired conserved cysteine motifs, CxxCP and CxHCDGP
[Cellular processes, Detoxification, Cellular processes,
Adaptations to atypical conditions].
Length = 515
Score = 27.7 bits (62), Expect = 9.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 57 YDFIVIGGGSAGAVVA 72
YD +V+GGG AGA A
Sbjct: 213 YDVLVVGGGPAGAAAA 228
>gnl|CDD|236010 PRK07395, PRK07395, L-aspartate oxidase; Provisional.
Length = 553
Score = 27.7 bits (62), Expect = 9.3
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 49 DQQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLL 86
L ++D +V+G G+AG A L +H + L+
Sbjct: 2 SSTILPSQFDVLVVGSGAAGLYAA--LCLPSHLRVGLI 37
>gnl|CDD|218866 pfam06039, Mqo, Malate:quinone oxidoreductase (Mqo). This family
consists of several bacterial Malate:quinone
oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes
part in the citric acid cycle. It oxidises L-malate to
oxaloacetate and donates electrons to ubiquinone-1 and
other artificial acceptors or, via the electron
transfer chain, to oxygen. NAD is not an acceptor and
the natural direct acceptor for the enzyme is most
likely a quinone. The enzyme is therefore called
malate:quinone oxidoreductase, abbreviated to Mqo. Mqo
is a peripheral membrane protein and can be released
from the membrane by addition of chelators.
Length = 489
Score = 27.6 bits (62), Expect = 9.8
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 54 HREYDFIVIGGGSAGAVVASRLSEVA-HWSILLLE 87
H + D ++IG G A + L E+ +WSI + E
Sbjct: 2 HDKVDVVLIGAGIMSATLGVLLKELEPNWSIEVFE 36
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.423
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,391,106
Number of extensions: 1589295
Number of successful extensions: 1865
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1841
Number of HSP's successfully gapped: 116
Length of query: 310
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 213
Effective length of database: 6,635,264
Effective search space: 1413311232
Effective search space used: 1413311232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)